ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags39o06 |
|---|---|
| Clone Library Name | barley_pub |
>RL27_ARATH (P51419) 60S ribosomal protein L27| Length = 135 Score = 194 bits (492), Expect = 3e-49 Identities = 99/137 (72%), Positives = 106/137 (77%) Frame = +3 Query: 69 MVKFLKPGKAVILLQGRYAGKKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAK 248 MVKFLK KAVILLQGRYAGKKAVI++ F++G RDRPYGHCLVAGL KYP KVIRKDSAK Sbjct: 1 MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGNRDRPYGHCLVAGLKKYPSKVIRKDSAK 60 Query: 249 KTAKKSRVKVFLKLVNFTHLMPTRYTLDVDLKEVASGAPXXXXXXXXXXXXXXXXXXXXE 428 KTAKKSRVK F+KLVN+ HLMPTRYTLDVDLKEVA+ E Sbjct: 61 KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVAT--LDALQSKDKKVAALKEAKAKLE 118 Query: 429 ERFKTGKNRWFFTKLRF 479 ERFKTGKNRWFFTKLRF Sbjct: 119 ERFKTGKNRWFFTKLRF 135
>RL27_PEA (Q05462) 60S ribosomal protein L27| Length = 135 Score = 192 bits (489), Expect = 6e-49 Identities = 95/137 (69%), Positives = 106/137 (77%) Frame = +3 Query: 69 MVKFLKPGKAVILLQGRYAGKKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAK 248 MVKFLKP KAVILLQGRYAGKKAVIV+ F++GTR++PYGHCLVAG+ K+P KVI+KDSAK Sbjct: 1 MVKFLKPNKAVILLQGRYAGKKAVIVKTFDDGTREKPYGHCLVAGIKKFPSKVIKKDSAK 60 Query: 249 KTAKKSRVKVFLKLVNFTHLMPTRYTLDVDLKEVASGAPXXXXXXXXXXXXXXXXXXXXE 428 KTAKKSRVK F+KLVN+ HLMPTRYTLDVDLK+ P E Sbjct: 61 KTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKDAV--VPDVLQSKDKKVTALKETKKSLE 118 Query: 429 ERFKTGKNRWFFTKLRF 479 ERFKTGKNRWFFTKLRF Sbjct: 119 ERFKTGKNRWFFTKLRF 135
>RL27_SOLTU (P41101) 60S ribosomal protein L27| Length = 138 Score = 187 bits (476), Expect = 2e-47 Identities = 93/138 (67%), Positives = 103/138 (74%), Gaps = 1/138 (0%) Frame = +3 Query: 69 MVKFLKPGKAVILLQGRYAGKKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAK 248 M KFLKP KAVILLQG+YAG+KAVIVR F+EGTRDRPYGHCLVAG+++YPKKVIRKDSAK Sbjct: 1 MEKFLKPNKAVILLQGKYAGRKAVIVRAFDEGTRDRPYGHCLVAGISRYPKKVIRKDSAK 60 Query: 249 KTAKKSRVKVFLKLVNFTHLMPTRYTLDVDLKEVASG-APXXXXXXXXXXXXXXXXXXXX 425 K KKSRVK F+KLVN+ H+MPTRYTLD DLK+V Sbjct: 61 KAGKKSRVKAFIKLVNYNHIMPTRYTLDEDLKDVVKDVVNADVLQARDKKVTARRTKARL 120 Query: 426 EERFKTGKNRWFFTKLRF 479 ERFKTGKNRWFFTKLRF Sbjct: 121 AERFKTGKNRWFFTKLRF 138
>RL27_PYRST (Q02984) 60S ribosomal protein L27| Length = 134 Score = 159 bits (403), Expect = 5e-39 Identities = 82/137 (59%), Positives = 95/137 (69%) Frame = +3 Query: 69 MVKFLKPGKAVILLQGRYAGKKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAK 248 MVKFLK GK V++L GR+AGKKAVIVR F++GT RPYGH LV GL K P+KV ++ S K Sbjct: 1 MVKFLKSGKVVVVLSGRFAGKKAVIVRNFDDGTSSRPYGHALVVGLQKEPRKVTKRQSQK 60 Query: 249 KTAKKSRVKVFLKLVNFTHLMPTRYTLDVDLKEVASGAPXXXXXXXXXXXXXXXXXXXXE 428 K AKKS +K F+K VN+ HLMPTRYTLDVD K VA+ A E Sbjct: 61 KQAKKSTLKTFIKTVNYNHLMPTRYTLDVDFKGVAAEA---QENPTKKVEARKECKKLLE 117 Query: 429 ERFKTGKNRWFFTKLRF 479 E+FKTGKNRWFFTKLRF Sbjct: 118 EKFKTGKNRWFFTKLRF 134
>RL27_HIPCM (P61359) 60S ribosomal protein L27| Length = 135 Score = 138 bits (347), Expect = 2e-32 Identities = 66/135 (48%), Positives = 88/135 (65%) Frame = +3 Query: 75 KFLKPGKAVILLQGRYAGKKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKT 254 KF+KPGK V++L GRYAG+KAVIV+ ++GT DRPY H LVAG+ +YP+KV KK Sbjct: 2 KFMKPGKVVMVLAGRYAGRKAVIVKNIDDGTADRPYSHALVAGIDRYPRKVTAPMGKKKI 61 Query: 255 AKKSRVKVFLKLVNFTHLMPTRYTLDVDLKEVASGAPXXXXXXXXXXXXXXXXXXXXEER 434 AK+S++K F+K+ N+ HLMPTRY++D+ L + EER Sbjct: 62 AKRSKIKAFVKVYNYNHLMPTRYSVDIPLDKTVVN-KDVFRDPALKSKARREAKVKFEER 120 Query: 435 FKTGKNRWFFTKLRF 479 +KTGKN+WFF KLRF Sbjct: 121 YKTGKNKWFFQKLRF 135
>RL27_BRARE (Q7ZV82) 60S ribosomal protein L27| Length = 135 Score = 137 bits (346), Expect = 2e-32 Identities = 66/135 (48%), Positives = 88/135 (65%) Frame = +3 Query: 75 KFLKPGKAVILLQGRYAGKKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKT 254 KF+KPGK V++L GRYAG+KAVIV+ ++GT DRPY H LVAG+ +YP+KV KK Sbjct: 2 KFMKPGKVVMVLAGRYAGRKAVIVKNIDDGTADRPYSHALVAGIDRYPRKVTATMGKKKI 61 Query: 255 AKKSRVKVFLKLVNFTHLMPTRYTLDVDLKEVASGAPXXXXXXXXXXXXXXXXXXXXEER 434 AK+S++K F+K+ N+ HLMPTRY++D+ L + EER Sbjct: 62 AKRSKIKAFVKVFNYNHLMPTRYSVDIPLDKTVVN-KDVFRDPALKRKARREAKVKFEER 120 Query: 435 FKTGKNRWFFTKLRF 479 +KTGKN+WFF KLRF Sbjct: 121 YKTGKNKWFFQKLRF 135
>RL27_YEAST (P38706) 60S ribosomal protein L27| Length = 136 Score = 137 bits (344), Expect = 4e-32 Identities = 67/138 (48%), Positives = 91/138 (65%), Gaps = 1/138 (0%) Frame = +3 Query: 69 MVKFLKPGKAVILLQGRYAGKKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAK 248 M KFLK GK ++++GRYAGKK VIV+ +EG++ P+GH LVAG+ +YP KV +K AK Sbjct: 1 MAKFLKAGKVAVVVRGRYAGKKVVIVKPHDEGSKSHPFGHALVAGIERYPLKVTKKHGAK 60 Query: 249 KTAKKSRVKVFLKLVNFTHLMPTRYTLDVD-LKEVASGAPXXXXXXXXXXXXXXXXXXXX 425 K AK++++K F+K+VN+ HL+PTRYTLDV+ K V S Sbjct: 61 KVAKRTKIKPFIKVVNYNHLLPTRYTLDVEAFKSVVS--TETFEQPSQREEAKKVVKKAF 118 Query: 426 EERFKTGKNRWFFTKLRF 479 EER + GKN+WFF+KLRF Sbjct: 119 EERHQAGKNQWFFSKLRF 136
>RL17_ICTPU (Q90YU1) 60S ribosomal protein L27| Length = 135 Score = 136 bits (343), Expect = 5e-32 Identities = 65/135 (48%), Positives = 88/135 (65%) Frame = +3 Query: 75 KFLKPGKAVILLQGRYAGKKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKT 254 KF+KPGK V++L GRYAG+KAVIV+ ++GT DRPY H LV+G+ +YP+KV KK Sbjct: 2 KFMKPGKVVMVLAGRYAGRKAVIVKNIDDGTADRPYSHALVSGIDRYPRKVTATMGKKKV 61 Query: 255 AKKSRVKVFLKLVNFTHLMPTRYTLDVDLKEVASGAPXXXXXXXXXXXXXXXXXXXXEER 434 AK+S++K F+K+ N+ HLMPTRY++D+ L + EER Sbjct: 62 AKRSKIKAFVKVFNYNHLMPTRYSVDIPLDKTIVN-KDVFRDPALKRKARREAKVKFEER 120 Query: 435 FKTGKNRWFFTKLRF 479 +KTGKN+WFF KLRF Sbjct: 121 YKTGKNKWFFQKLRF 135
>RL27_RAT (P61354) 60S ribosomal protein L27| Length = 135 Score = 136 bits (342), Expect = 6e-32 Identities = 65/135 (48%), Positives = 88/135 (65%) Frame = +3 Query: 75 KFLKPGKAVILLQGRYAGKKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKT 254 KF+KPGK V++L GRY+G+KAVIV+ ++GT DRPY H LVAG+ +YP+KV KK Sbjct: 2 KFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKI 61 Query: 255 AKKSRVKVFLKLVNFTHLMPTRYTLDVDLKEVASGAPXXXXXXXXXXXXXXXXXXXXEER 434 AK+S++K F+K+ N+ HLMPTRY++D+ L + EER Sbjct: 62 AKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVN-KDVFRDPALKRKARREAKVKFEER 120 Query: 435 FKTGKNRWFFTKLRF 479 +KTGKN+WFF KLRF Sbjct: 121 YKTGKNKWFFQKLRF 135
>RL27_MOUSE (P61358) 60S ribosomal protein L27| Length = 135 Score = 136 bits (342), Expect = 6e-32 Identities = 65/135 (48%), Positives = 88/135 (65%) Frame = +3 Query: 75 KFLKPGKAVILLQGRYAGKKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKT 254 KF+KPGK V++L GRY+G+KAVIV+ ++GT DRPY H LVAG+ +YP+KV KK Sbjct: 2 KFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKI 61 Query: 255 AKKSRVKVFLKLVNFTHLMPTRYTLDVDLKEVASGAPXXXXXXXXXXXXXXXXXXXXEER 434 AK+S++K F+K+ N+ HLMPTRY++D+ L + EER Sbjct: 62 AKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVN-KDVFRDPALKRKARREAKVKFEER 120 Query: 435 FKTGKNRWFFTKLRF 479 +KTGKN+WFF KLRF Sbjct: 121 YKTGKNKWFFQKLRF 135
>RL27_HUMAN (P61353) 60S ribosomal protein L27| Length = 135 Score = 136 bits (342), Expect = 6e-32 Identities = 65/135 (48%), Positives = 88/135 (65%) Frame = +3 Query: 75 KFLKPGKAVILLQGRYAGKKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKT 254 KF+KPGK V++L GRY+G+KAVIV+ ++GT DRPY H LVAG+ +YP+KV KK Sbjct: 2 KFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKI 61 Query: 255 AKKSRVKVFLKLVNFTHLMPTRYTLDVDLKEVASGAPXXXXXXXXXXXXXXXXXXXXEER 434 AK+S++K F+K+ N+ HLMPTRY++D+ L + EER Sbjct: 62 AKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVN-KDVFRDPALKRKARREAKVKFEER 120 Query: 435 FKTGKNRWFFTKLRF 479 +KTGKN+WFF KLRF Sbjct: 121 YKTGKNKWFFQKLRF 135
>RL27_CHICK (P61355) 60S ribosomal protein L27| Length = 135 Score = 136 bits (342), Expect = 6e-32 Identities = 65/135 (48%), Positives = 88/135 (65%) Frame = +3 Query: 75 KFLKPGKAVILLQGRYAGKKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKT 254 KF+KPGK V++L GRY+G+KAVIV+ ++GT DRPY H LVAG+ +YP+KV KK Sbjct: 2 KFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKI 61 Query: 255 AKKSRVKVFLKLVNFTHLMPTRYTLDVDLKEVASGAPXXXXXXXXXXXXXXXXXXXXEER 434 AK+S++K F+K+ N+ HLMPTRY++D+ L + EER Sbjct: 62 AKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVN-KDVFRDPALKRKARREAKVKFEER 120 Query: 435 FKTGKNRWFFTKLRF 479 +KTGKN+WFF KLRF Sbjct: 121 YKTGKNKWFFQKLRF 135
>RL27_CERNI (P61357) 60S ribosomal protein L27| Length = 135 Score = 136 bits (342), Expect = 6e-32 Identities = 65/135 (48%), Positives = 88/135 (65%) Frame = +3 Query: 75 KFLKPGKAVILLQGRYAGKKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKT 254 KF+KPGK V++L GRY+G+KAVIV+ ++GT DRPY H LVAG+ +YP+KV KK Sbjct: 2 KFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKI 61 Query: 255 AKKSRVKVFLKLVNFTHLMPTRYTLDVDLKEVASGAPXXXXXXXXXXXXXXXXXXXXEER 434 AK+S++K F+K+ N+ HLMPTRY++D+ L + EER Sbjct: 62 AKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVN-KDVFRDPALKRKARREAKVKFEER 120 Query: 435 FKTGKNRWFFTKLRF 479 +KTGKN+WFF KLRF Sbjct: 121 YKTGKNKWFFQKLRF 135
>RL27_BOVIN (P61356) 60S ribosomal protein L27| Length = 135 Score = 136 bits (342), Expect = 6e-32 Identities = 65/135 (48%), Positives = 88/135 (65%) Frame = +3 Query: 75 KFLKPGKAVILLQGRYAGKKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKT 254 KF+KPGK V++L GRY+G+KAVIV+ ++GT DRPY H LVAG+ +YP+KV KK Sbjct: 2 KFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKI 61 Query: 255 AKKSRVKVFLKLVNFTHLMPTRYTLDVDLKEVASGAPXXXXXXXXXXXXXXXXXXXXEER 434 AK+S++K F+K+ N+ HLMPTRY++D+ L + EER Sbjct: 62 AKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVN-KDVFRDPALKRKARREAKVKFEER 120 Query: 435 FKTGKNRWFFTKLRF 479 +KTGKN+WFF KLRF Sbjct: 121 YKTGKNKWFFQKLRF 135
>RL27_CANFA (Q9XSU7) 60S ribosomal protein L27| Length = 135 Score = 135 bits (339), Expect = 1e-31 Identities = 64/135 (47%), Positives = 88/135 (65%) Frame = +3 Query: 75 KFLKPGKAVILLQGRYAGKKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKT 254 KF+KPGK V++L GRY+G+KAVIV+ ++GT DRPY H LVAG+ +YP+KV KK Sbjct: 2 KFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKI 61 Query: 255 AKKSRVKVFLKLVNFTHLMPTRYTLDVDLKEVASGAPXXXXXXXXXXXXXXXXXXXXEER 434 AK+S++K F+K+ N+ HLMPTRY++D+ L + EE+ Sbjct: 62 AKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVN-KDVFRDPALKRKARREAKVKFEEK 120 Query: 435 FKTGKNRWFFTKLRF 479 +KTGKN+WFF KLRF Sbjct: 121 YKTGKNKWFFQKLRF 135
>RL27B_SCHPO (O74538) 60S ribosomal protein L27-B| Length = 136 Score = 130 bits (327), Expect = 4e-30 Identities = 62/138 (44%), Positives = 91/138 (65%), Gaps = 1/138 (0%) Frame = +3 Query: 69 MVKFLKPGKAVILLQGRYAGKKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAK 248 MVK LKPGK ++ +GR+AGKK VI++ ++G++ P+GH +VAG+ +YP KV + AK Sbjct: 1 MVKILKPGKVALVTRGRFAGKKVVILQNVDQGSKSHPFGHAVVAGVERYPLKVTKSMGAK 60 Query: 249 KTAKKSRVKVFLKLVNFTHLMPTRYTLDVD-LKEVASGAPXXXXXXXXXXXXXXXXXXXX 425 + AK+SRVK F+K++N+ HLMPTRY L++D LK + + P Sbjct: 61 RIAKRSRVKPFIKVINYNHLMPTRYALELDNLKGLVT--PTTFSEPSQRSAAKKTVKNTF 118 Query: 426 EERFKTGKNRWFFTKLRF 479 EE+++TGK+ WFFT LRF Sbjct: 119 EEKYQTGKSAWFFTPLRF 136
>RL27_CAEEL (P91914) 60S ribosomal protein L27| Length = 136 Score = 128 bits (322), Expect = 1e-29 Identities = 64/142 (45%), Positives = 93/142 (65%), Gaps = 5/142 (3%) Frame = +3 Query: 69 MVKFLKPGKAVILLQGRYAGKKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAK 248 M K +KPGK V++L+G+YAG+KAV+V+ +EG DR Y H ++AG+ +YP KV + K Sbjct: 1 MGKIMKPGKVVLVLRGKYAGRKAVVVKQQDEGVSDRTYPHAIIAGIDRYPLKVTKDMGKK 60 Query: 249 KTAKKSRVKVFLKLVNFTHLMPTRYTLDV-----DLKEVASGAPXXXXXXXXXXXXXXXX 413 K K++++K FLK+V++THL+PTRY++DV ++ + A AP Sbjct: 61 KIEKRNKLKPFLKVVSYTHLLPTRYSVDVAFDKTNINKEALKAP------SKKRKALVEV 114 Query: 414 XXXXEERFKTGKNRWFFTKLRF 479 EER+KTGKN+WFFTKLRF Sbjct: 115 KSKFEERYKTGKNKWFFTKLRF 136
>RL27A_SCHPO (O14388) 60S ribosomal protein L27-A| Length = 136 Score = 126 bits (316), Expect = 7e-29 Identities = 60/138 (43%), Positives = 90/138 (65%), Gaps = 1/138 (0%) Frame = +3 Query: 69 MVKFLKPGKAVILLQGRYAGKKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAK 248 MVK LKPGK ++ +GR+AGKK VI++ ++G++ P+GH +VAG+ +YP KV + AK Sbjct: 1 MVKILKPGKVALITRGRFAGKKVVILQAIDQGSKSHPFGHAVVAGVERYPLKVTKSMGAK 60 Query: 249 KTAKKSRVKVFLKLVNFTHLMPTRYTLDVD-LKEVASGAPXXXXXXXXXXXXXXXXXXXX 425 + A++SRVK F+K+VN+ HLMPTRY L++D LK + + Sbjct: 61 RIARRSRVKPFIKVVNYNHLMPTRYALELDNLKGLITA--DTFKEPTQRSAARKTVKKTF 118 Query: 426 EERFKTGKNRWFFTKLRF 479 EE++++GK+ WFFT LRF Sbjct: 119 EEKYQSGKSAWFFTPLRF 136
>RL27_CANAL (Q9P843) 60S ribosomal protein L27| Length = 136 Score = 124 bits (311), Expect = 3e-28 Identities = 62/137 (45%), Positives = 85/137 (62%) Frame = +3 Query: 69 MVKFLKPGKAVILLQGRYAGKKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAK 248 M KF+K GK I+++GRYAGKK VIV+ +EGT+ P+ H +VAG+ + P KV +K AK Sbjct: 1 MAKFIKSGKVAIVVRGRYAGKKVVIVKPHDEGTKSHPFPHAIVAGIERAPLKVTKKMDAK 60 Query: 249 KTAKKSRVKVFLKLVNFTHLMPTRYTLDVDLKEVASGAPXXXXXXXXXXXXXXXXXXXXE 428 K K+++VK F+KLVN+ HLMPTRY+LDV+ + A E Sbjct: 61 KVTKRTKVKPFVKLVNYNHLMPTRYSLDVESFKSAV-TSEALEEPSQREEAKKVVKKAFE 119 Query: 429 ERFKTGKNRWFFTKLRF 479 E+ + GKN+WFF KL F Sbjct: 120 EKHQAGKNKWFFQKLHF 136
>RL14E_PYRAE (Q8ZYB4) 50S ribosomal protein L14e| Length = 103 Score = 32.7 bits (73), Expect = 1.0 Identities = 26/89 (29%), Positives = 41/89 (46%) Frame = +3 Query: 69 MVKFLKPGKAVILLQGRYAGKKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAK 248 MVK + G+ V+ + GR AG+KAV+V + +E + ++ G PK + Sbjct: 1 MVKVIDIGRVVVKVLGREAGRKAVVVDIVDE-------NYVVITG----PKPI------- 42 Query: 249 KTAKKSRVKVFLKLVNFTHLMPTRYTLDV 335 T K R VN H+ PT +D+ Sbjct: 43 -TGVKRR------RVNINHIEPTDKKIDI 64
>RL6B_YEAST (P05739) 60S ribosomal protein L6-B (L17) (YL16) (RP18)| Length = 175 Score = 31.6 bits (70), Expect = 2.2 Identities = 25/78 (32%), Positives = 39/78 (50%) Frame = +3 Query: 63 KKMVKFLKPGKAVILLQGRYAGKKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDS 242 +K+ L PG +ILL GR+ GK+ V ++ E+ T LV G K +R+ + Sbjct: 27 QKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNT-------LLVTGPFKVNGVPLRRVN 79 Query: 243 AKKTAKKSRVKVFLKLVN 296 A+ S KV ++ VN Sbjct: 80 ARYVIATS-TKVSVEGVN 96
>RL6A_YEAST (Q02326) 60S ribosomal protein L6-A (L17) (YL16) (RP18)| Length = 175 Score = 31.6 bits (70), Expect = 2.2 Identities = 24/78 (30%), Positives = 40/78 (51%) Frame = +3 Query: 63 KKMVKFLKPGKAVILLQGRYAGKKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDS 242 +K+ L PG +ILL GR+ GK+ V ++ E+ T L++G K +R+ + Sbjct: 27 QKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNT-------LLISGPFKVNGVPLRRVN 79 Query: 243 AKKTAKKSRVKVFLKLVN 296 A+ S KV ++ VN Sbjct: 80 ARYVIATS-TKVSVEGVN 96
>BRAP_MOUSE (Q99MP8) BRCA1-associated protein (EC 6.3.2.-) (BRAP2) (Impedes| mitogenic signal propagation) (IMP) Length = 591 Score = 31.2 bits (69), Expect = 2.9 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 2/46 (4%) Frame = +3 Query: 15 HNLQPT--GGAAARGEESKKMVKFLKPGKAVILLQGRYAGKKAVIV 146 H+ PT G +AA GE S + +K AV L+G+ AG+KA I+ Sbjct: 15 HSPVPTDFGFSAAAGEMSDEEIKKKTLASAVACLEGKSAGEKAAII 60
>RL24_RICPR (Q9ZCR6) 50S ribosomal protein L24| Length = 113 Score = 30.8 bits (68), Expect = 3.8 Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%) Frame = +3 Query: 69 MVKF-LKPGKAVILLQGRYAGKKAVIVRVFEE 161 M+K +K G V+++ G+Y GKK +++VF E Sbjct: 1 MIKLKVKKGDEVVIITGKYKGKKGKVLKVFPE 32
>POL_SOCMV (P15629) Enzymatic polyprotein [Contains: Aspartic protease (EC| 3.4.23.-); Endonuclease; Reverse transcriptase (EC 2.7.7.49)] Length = 692 Score = 30.0 bits (66), Expect = 6.5 Identities = 16/46 (34%), Positives = 25/46 (54%) Frame = +3 Query: 204 LAKYPKKVIRKDSAKKTAKKSRVKVFLKLVNFTHLMPTRYTLDVDL 341 + K PK++I D +K +++ VFLK+ N L+P Y D L Sbjct: 54 ILKQPKEIIIADKSKHYIREAISNVFLKIENKEFLIPIIYLHDSGL 99
>RL6_SCHPO (P79071) 60S ribosomal protein L6| Length = 194 Score = 29.6 bits (65), Expect = 8.5 Identities = 14/40 (35%), Positives = 21/40 (52%) Frame = +3 Query: 42 AARGEESKKMVKFLKPGKAVILLQGRYAGKKAVIVRVFEE 161 A + K+ L PG ILL GR+ GK+ V++ E+ Sbjct: 38 ARKAVRPTKLRASLAPGTVCILLAGRFRGKRVVVLSQLED 77
>RL14_SCHPO (O94238) 60S ribosomal protein L14| Length = 134 Score = 29.6 bits (65), Expect = 8.5 Identities = 16/60 (26%), Positives = 33/60 (55%) Frame = +3 Query: 75 KFLKPGKAVILLQGRYAGKKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKT 254 ++++ G+ V++ +G Y GK AVIV + + + + +++P++VIR S T Sbjct: 6 RYVEVGRVVLVTKGEYTGKLAVIVDIVDHKRA------LIDSPCSEFPRQVIRYGSVVLT 59
>RPA2_NEUCR (O74633) DNA-directed RNA polymerase I polypeptide 2 (EC 2.7.7.6)| (RNA polymerase I subunit 2) Length = 1234 Score = 29.6 bits (65), Expect = 8.5 Identities = 23/73 (31%), Positives = 31/73 (42%) Frame = +3 Query: 120 YAGKKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKVFLKLVNF 299 Y G + + +R +GH G KKV KD ++ + KS VK+F N Sbjct: 781 YTGYDMDDAMILNKSAHERGFGH----GSIYKTKKVSLKDDSRTRSAKSIVKMFGFAPNS 836 Query: 300 THLMPTRYTLDVD 338 T TR LD D Sbjct: 837 TIRESTRDMLDND 849
>RL6_ENTHI (O15595) 60S ribosomal protein L6 (Fragment)| Length = 92 Score = 29.6 bits (65), Expect = 8.5 Identities = 13/30 (43%), Positives = 20/30 (66%) Frame = +3 Query: 51 GEESKKMVKFLKPGKAVILLQGRYAGKKAV 140 G +K+ K + PG +I++ G+YAGKK V Sbjct: 48 GWNLEKLRKSIVPGAILIIVGGKYAGKKVV 77
>RL24_RICCN (Q92GX7) 50S ribosomal protein L24| Length = 109 Score = 29.6 bits (65), Expect = 8.5 Identities = 13/35 (37%), Positives = 24/35 (68%), Gaps = 1/35 (2%) Frame = +3 Query: 69 MVKF-LKPGKAVILLQGRYAGKKAVIVRVFEEGTR 170 M+K +K G V+++ G++ GKK I++VF E ++ Sbjct: 1 MIKLKVKKGDEVVVITGKHKGKKGKILKVFPEDSK 35 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,093,768 Number of Sequences: 219361 Number of extensions: 1105592 Number of successful extensions: 3301 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 3098 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3276 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6427774254 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
