ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags39n14
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
2dbj|AP004329.3| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
3dbj|AP003634.3| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
4dbj|AK105838.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 2e-12
5dbj|AK038833.1| Mus musculus adult male hypothalamus cDNA, RIKEN... 48 0.022
6ref|XM_672697.1| Plasmodium berghei strain ANKA hypothetical pro... 44 0.34
7gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, c... 42 1.4
8gb|AC108762.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.3
9gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 40 5.3
10gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence 40 5.3
11ref|XM_921450.2| PREDICTED: Mus musculus rearranged L-myc fusion... 40 5.3
12ref|XM_909848.2| PREDICTED: Mus musculus rearranged L-myc fusion... 40 5.3
13gb|AY261359.1| Bovine herpesvirus 5 strain SV507/99, complete ge... 40 5.3
14emb|CR684175.2|CNS0FQUZ Tetraodon nigroviridis full-length cDNA 40 5.3
15gb|AC103939.8| Mus musculus chromosome 18, clone RP23-300E7, com... 40 5.3
16emb|AL162729.8| Human DNA sequence from clone RP11-215O15 on chr... 40 5.3
17emb|X00264.1|HSLH01 Human beta-LH gene (luteinizing hormone gene... 40 5.3
18gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 40 5.3
19gb|AC022790.8| Homo sapiens chromosome 8, clone RP11-744J10, com... 40 5.3
20gb|AC091924.4| Homo sapiens chromosome 5 clone RP11-268L12, comp... 40 5.3
21ref|NM_001039949.1| Macaca mulatta receptor interacting protein ... 40 5.3
22dbj|AK092419.1| Homo sapiens cDNA FLJ35100 fis, clone PLACE6006394 40 5.3
23gb|DQ341264.1| Macaca mulatta dusty protein kinase mRNA, complet... 40 5.3
24gb|AF397591.1| Homo sapiens clone Hsa17LH luteinizing hormone be... 40 5.3
25gb|AF397581.1| Homo sapiens clone Hsa08CG chorionic gonadotropin... 40 5.3
26gb|AC013746.10| Homo sapiens chromosome 8, clone RP11-131P18, co... 40 5.3
27gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, comple... 40 5.3
28gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 40 5.3
29gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 40 5.3
30emb|BX247864.10| Zebrafish DNA sequence from clone CH211-225P16,... 40 5.3
31gb|AE009565.1| Brucella melitensis 16M chromosome I, section 122... 40 5.3
32gb|AF099990.1|AF099990 Rattus norvegicus Ste-20 related kinase S... 40 5.3
33gb|AC022167.7| Homo sapiens chromosome 16 clone RP11-77H9, compl... 40 5.3
34gb|AC010251.3|AC010251 Homo sapiens chromosome 5 clone CTC-426D1... 40 5.3
35gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I... 40 5.3
36emb|AL671898.7| Mouse DNA sequence from clone RP23-194K1 on chro... 40 5.3
37dbj|AK105419.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.3
38dbj|AK101825.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.3
39ref|NM_210954.1| Eremothecium gossypii AFR053Cp (AFR053C), mRNA 40 5.3
40emb|BX927288.6| Zebrafish DNA sequence from clone DKEY-22O20 in ... 40 5.3
41gb|AY107176.1| Zea mays PCO132849 mRNA sequence 40 5.3
42gb|AC104892.10| Mus musculus chromosome 18, clone RP23-262H4, co... 40 5.3
43ref|NM_019362.1| Rattus norvegicus serine/threonine kinase 39, S... 40 5.3
44emb|BX296559.14| Zebrafish DNA sequence from clone CH211-285F17 ... 40 5.3
45gb|AF068261.1|AF068261 Rattus norvegicus pancreatic serine threo... 40 5.3
46gb|AF057042.1|AF057042 Mycobacterium intracellulare tryptophan s... 40 5.3
47emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I,... 40 5.3
48dbj|D88190.1| Rattus norvegicus mRNA for protein kinase PASK, co... 40 5.3 
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 53/57 (92%)
 Strand = Plus / Plus

                                                                         
Query: 19       ctcctcgccaagcgctgcggcgtcaccaccgacgcgtccacctgcgccaagtacgcc 75
                ||||||||||| ||||||||||||||||||||||| ||| |||||||||||| ||||
Sbjct: 29598433 ctcctcgccaaacgctgcggcgtcaccaccgacgcctccgcctgcgccaagtccgcc 29598489



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 82/98 (83%)
 Strand = Plus / Plus

                                                                            
Query: 157      gccaagccaaccgctagcggaggtagcacgcatcccctgagcttgatggccgcatcttca 216
                ||||||||||| || ||||||||    ||||||| ||||||||||||    ||||| || 
Sbjct: 29599294 gccaagccaacggcgagcggaggcgcaacgcatcgcctgagcttgatcagtgcatcgtcc 29599353

                                                      
Query: 217      tttgtaggcttgagtttcatctggtggacgatcatggc 254
                || |||||||| || |||||||||||||||||||||||
Sbjct: 29599354 ttggtaggcttcagcttcatctggtggacgatcatggc 29599391



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                     
Query: 102      tgcaggtagcacggccgcttcttcagcatcaacgggaactgctgcttctacag 154
                |||||||||||| || ||||||||||| || || ||||  ||||| |||||||
Sbjct: 29599026 tgcaggtagcactgctgcttcttcagcttccactggaaacgctgcatctacag 29599078
to top
>dbj|AP004329.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OJ1663_H12
          Length = 125422

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 53/57 (92%)
 Strand = Plus / Plus

                                                                      
Query: 19    ctcctcgccaagcgctgcggcgtcaccaccgacgcgtccacctgcgccaagtacgcc 75
             ||||||||||| ||||||||||||||||||||||| ||| |||||||||||| ||||
Sbjct: 42018 ctcctcgccaaacgctgcggcgtcaccaccgacgcctccgcctgcgccaagtccgcc 42074



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 82/98 (83%)
 Strand = Plus / Plus

                                                                         
Query: 157   gccaagccaaccgctagcggaggtagcacgcatcccctgagcttgatggccgcatcttca 216
             ||||||||||| || ||||||||    ||||||| ||||||||||||    ||||| || 
Sbjct: 42879 gccaagccaacggcgagcggaggcgcaacgcatcgcctgagcttgatcagtgcatcgtcc 42938

                                                   
Query: 217   tttgtaggcttgagtttcatctggtggacgatcatggc 254
             || |||||||| || |||||||||||||||||||||||
Sbjct: 42939 ttggtaggcttcagcttcatctggtggacgatcatggc 42976



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                  
Query: 102   tgcaggtagcacggccgcttcttcagcatcaacgggaactgctgcttctacag 154
             |||||||||||| || ||||||||||| || || ||||  ||||| |||||||
Sbjct: 42611 tgcaggtagcactgctgcttcttcagcttccactggaaacgctgcatctacag 42663
to top
>dbj|AP003634.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0655A07
          Length = 172473

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 53/57 (92%)
 Strand = Plus / Plus

                                                                       
Query: 19     ctcctcgccaagcgctgcggcgtcaccaccgacgcgtccacctgcgccaagtacgcc 75
              ||||||||||| ||||||||||||||||||||||| ||| |||||||||||| ||||
Sbjct: 162939 ctcctcgccaaacgctgcggcgtcaccaccgacgcctccgcctgcgccaagtccgcc 162995



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 82/98 (83%)
 Strand = Plus / Plus

                                                                          
Query: 157    gccaagccaaccgctagcggaggtagcacgcatcccctgagcttgatggccgcatcttca 216
              ||||||||||| || ||||||||    ||||||| ||||||||||||    ||||| || 
Sbjct: 163800 gccaagccaacggcgagcggaggcgcaacgcatcgcctgagcttgatcagtgcatcgtcc 163859

                                                    
Query: 217    tttgtaggcttgagtttcatctggtggacgatcatggc 254
              || |||||||| || |||||||||||||||||||||||
Sbjct: 163860 ttggtaggcttcagcttcatctggtggacgatcatggc 163897



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                   
Query: 102    tgcaggtagcacggccgcttcttcagcatcaacgggaactgctgcttctacag 154
              |||||||||||| || ||||||||||| || || ||||  ||||| |||||||
Sbjct: 163532 tgcaggtagcactgctgcttcttcagcttccactggaaacgctgcatctacag 163584
to top
>dbj|AK105838.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-203-F04, full
           insert sequence
          Length = 1548

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 53/57 (92%)
 Strand = Plus / Plus

                                                                    
Query: 19  ctcctcgccaagcgctgcggcgtcaccaccgacgcgtccacctgcgccaagtacgcc 75
           ||||||||||| ||||||||||||||||||||||| ||| |||||||||||| ||||
Sbjct: 395 ctcctcgccaaacgctgcggcgtcaccaccgacgcctccgcctgcgccaagtccgcc 451



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 81/98 (82%)
 Strand = Plus / Plus

                                                                        
Query: 157  gccaagccaaccgctagcggaggtagcacgcatcccctgagcttgatggccgcatcttca 216
            ||||||||||| || ||||||||    ||||||| ||||||||||||    ||||| || 
Sbjct: 1255 gccaagccaacggcgagcggaggcgcaacgcatcgcctgagcttgatcagtgcatcgtcc 1314

                                                  
Query: 217  tttgtaggcttgagtttcatctggtggacgatcatggc 254
            || |||||||  || |||||||||||||||||||||||
Sbjct: 1315 ttggtaggctccagcttcatctggtggacgatcatggc 1352



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                 
Query: 102  tgcaggtagcacggccgcttcttcagcatcaacgggaactgctgcttctacag 154
            |||||||||||| || ||||||||||| || || ||||  ||||| |||||||
Sbjct: 987  tgcaggtagcactgctgcttcttcagcttccactggaaacgctgcatctacag 1039
to top
>dbj|AK038833.1| Mus musculus adult male hypothalamus cDNA, RIKEN full-length enriched
            library, clone:A230066L14 product:unclassifiable, full
            insert sequence
          Length = 3113

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                    
Query: 341  tttcagtacattttggtgcatgtg 364
            ||||||||||||||||||||||||
Sbjct: 2674 tttcagtacattttggtgcatgtg 2697
to top
>ref|XM_672697.1| Plasmodium berghei strain ANKA hypothetical protein (PB000619.02.0)
           partial mRNA
          Length = 1053

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 284 attattatgtgaaaaactgtat 305
           ||||||||||||||||||||||
Sbjct: 641 attattatgtgaaaaactgtat 662
to top
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence
          Length = 3131724

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 72      cgccgccggggccggggccgatgct 96
               |||||||| ||||||||||||||||
Sbjct: 2549759 cgccgccgaggccggggccgatgct 2549735
to top
>gb|AC108762.2| Oryza sativa (japonica cultivar-group) chromosome 9 clone
             OSJNBb0052C07, complete sequence
          Length = 154528

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 72    cgccgccggggccggggccg 91
             ||||||||||||||||||||
Sbjct: 73036 cgccgccggggccggggccg 73017
to top
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 76      gccggggccggggccgatgc 95
               ||||||||||||||||||||
Sbjct: 1739608 gccggggccggggccgatgc 1739589
to top
>gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence
          Length = 2107794

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 73     gccgccggggccggggccga 92
              ||||||||||||||||||||
Sbjct: 669103 gccgccggggccggggccga 669122
to top
>ref|XM_921450.2| PREDICTED: Mus musculus rearranged L-myc fusion sequence,
          transcript variant 7 (Rlf), mRNA
          Length = 2752

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 72 cgccgccggggccggggccg 91
          ||||||||||||||||||||
Sbjct: 43 cgccgccggggccggggccg 62
to top
>ref|XM_909848.2| PREDICTED: Mus musculus rearranged L-myc fusion sequence,
          transcript variant 5 (Rlf), mRNA
          Length = 6705

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 72 cgccgccggggccggggccg 91
          ||||||||||||||||||||
Sbjct: 38 cgccgccggggccggggccg 57
to top
>gb|AY261359.1| Bovine herpesvirus 5 strain SV507/99, complete genome
          Length = 138390

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 72    cgccgccggggccggggccg 91
             ||||||||||||||||||||
Sbjct: 53995 cgccgccggggccggggccg 54014
to top
>emb|CR684175.2|CNS0FQUZ Tetraodon nigroviridis full-length cDNA
          Length = 1180

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 72  cgccgccggggccggggccg 91
           ||||||||||||||||||||
Sbjct: 883 cgccgccggggccggggccg 902
to top
>gb|AC103939.8| Mus musculus chromosome 18, clone RP23-300E7, complete sequence
          Length = 240406

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 261    agagataccaatgagtatga 280
              ||||||||||||||||||||
Sbjct: 212254 agagataccaatgagtatga 212235
to top
>emb|AL162729.8| Human DNA sequence from clone RP11-215O15 on chromosome 9 Contains a
            novel gene and a CpG island, complete sequence
          Length = 48561

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 272  tgagtatgaactattattat 291
            ||||||||||||||||||||
Sbjct: 3344 tgagtatgaactattattat 3363
to top
>emb|X00264.1|HSLH01 Human beta-LH gene (luteinizing hormone gene beta subunit)
          Length = 1662

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 77   ccggggccggggccgatgctgcca 100
            ||||||||||||| ||||||||||
Sbjct: 1094 ccggggccggggcagatgctgcca 1117
to top
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 75      cgccggggccggggccgatg 94
               ||||||||||||||||||||
Sbjct: 3059071 cgccggggccggggccgatg 3059090
to top
>gb|AC022790.8| Homo sapiens chromosome 8, clone RP11-744J10, complete sequence
          Length = 204034

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 285   ttattatgtgaaaaactgta 304
             ||||||||||||||||||||
Sbjct: 29634 ttattatgtgaaaaactgta 29653
to top
>gb|AC091924.4| Homo sapiens chromosome 5 clone RP11-268L12, complete sequence
          Length = 50828

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 285   ttattatgtgaaaaactgtatcgttgcaataa 316
             |||||||||||||||||| ||  |||||||||
Sbjct: 46036 ttattatgtgaaaaactggattattgcaataa 46067
to top
>ref|NM_001039949.1| Macaca mulatta receptor interacting protein kinase 5 (RIPK5), mRNA
          Length = 8065

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 72  cgccgccggggccggggccg 91
           ||||||||||||||||||||
Sbjct: 278 cgccgccggggccggggccg 259
to top
>dbj|AK092419.1| Homo sapiens cDNA FLJ35100 fis, clone PLACE6006394
          Length = 2766

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 140  ctgctgcttctacagttgcc 159
            ||||||||||||||||||||
Sbjct: 1338 ctgctgcttctacagttgcc 1319
to top
>gb|DQ341264.1| Macaca mulatta dusty protein kinase mRNA, complete cds
          Length = 8065

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 72  cgccgccggggccggggccg 91
           ||||||||||||||||||||
Sbjct: 278 cgccgccggggccggggccg 259
to top
>gb|AF397591.1| Homo sapiens clone Hsa17LH luteinizing hormone beta subunit (LHB)
           gene, exons 2 and 3 and partial cds
          Length = 1051

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 77  ccggggccggggccgatgctgcca 100
           ||||||||||||| ||||||||||
Sbjct: 518 ccggggccggggcagatgctgcca 541
to top
>gb|AF397581.1| Homo sapiens clone Hsa08CG chorionic gonadotropin beta subunit
           (CGB) gene, exons 2 and 3 and partial cds
          Length = 1052

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 77  ccggggccggggccgatgctgcca 100
           ||||||||||||| ||||||||||
Sbjct: 518 ccggggccggggcagatgctgcca 541
to top
>gb|AC013746.10| Homo sapiens chromosome 8, clone RP11-131P18, complete sequence
          Length = 212337

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 285    ttattatgtgaaaaactgta 304
              ||||||||||||||||||||
Sbjct: 179659 ttattatgtgaaaaactgta 179678
to top
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome
          Length = 3561584

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 73     gccgccggggccggggccga 92
              ||||||||||||||||||||
Sbjct: 942537 gccgccggggccggggccga 942556
to top
>gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VI,
              complete sequence
          Length = 1813164

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 38     gcgtcaccaccgacgcgtcc 57
              ||||||||||||||||||||
Sbjct: 525082 gcgtcaccaccgacgcgtcc 525101
to top
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 74      ccgccggggccggggccgat 93
               ||||||||||||||||||||
Sbjct: 2832120 ccgccggggccggggccgat 2832139
to top
>emb|BX247864.10| Zebrafish DNA sequence from clone CH211-225P16, complete sequence
          Length = 208758

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 340    ctttcagtacattttggtgc 359
              ||||||||||||||||||||
Sbjct: 153191 ctttcagtacattttggtgc 153172
to top
>gb|AE009565.1| Brucella melitensis 16M chromosome I, section 122 of 195 of the
            complete sequence
          Length = 10029

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 73   gccgccggggccggggccga 92
            ||||||||||||||||||||
Sbjct: 7498 gccgccggggccggggccga 7479
to top
>gb|AF099990.1|AF099990 Rattus norvegicus Ste-20 related kinase SPAK mRNA, complete cds
          Length = 3256

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 72  cgccgccggggccggggccg 91
           ||||||||||||||||||||
Sbjct: 246 cgccgccggggccggggccg 227
to top
>gb|AC022167.7| Homo sapiens chromosome 16 clone RP11-77H9, complete sequence
          Length = 180705

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 72    cgccgccggggccggggccg 91
             ||||||||||||||||||||
Sbjct: 63559 cgccgccggggccggggccg 63540
to top
>gb|AC010251.3|AC010251 Homo sapiens chromosome 5 clone CTC-426D19, complete sequence
          Length = 175191

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 285    ttattatgtgaaaaactgtatcgttgcaataa 316
              |||||||||||||||||| ||  |||||||||
Sbjct: 169367 ttattatgtgaaaaactggattattgcaataa 169336
to top
>gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence
          Length = 2124241

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 73     gccgccggggccggggccga 92
              ||||||||||||||||||||
Sbjct: 690789 gccgccggggccggggccga 690808
to top
>emb|AL671898.7| Mouse DNA sequence from clone RP23-194K1 on chromosome X, complete
              sequence
          Length = 212406

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 336    gtttctttcagtacattttg 355
              ||||||||||||||||||||
Sbjct: 169920 gtttctttcagtacattttg 169939
to top
>dbj|AK105419.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-124-A12, full
           insert sequence
          Length = 1926

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 72  cgccgccggggccggggccg 91
           ||||||||||||||||||||
Sbjct: 697 cgccgccggggccggggccg 678
to top
>dbj|AK101825.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033068A08, full
           insert sequence
          Length = 2184

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 72  cgccgccggggccggggccg 91
           ||||||||||||||||||||
Sbjct: 976 cgccgccggggccggggccg 957
to top
>ref|NM_210954.1| Eremothecium gossypii AFR053Cp (AFR053C), mRNA
          Length = 354

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 38  gcgtcaccaccgacgcgtcc 57
           ||||||||||||||||||||
Sbjct: 250 gcgtcaccaccgacgcgtcc 231
to top
>emb|BX927288.6| Zebrafish DNA sequence from clone DKEY-22O20 in linkage group 18,
             complete sequence
          Length = 123980

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 340   ctttcagtacattttggtgc 359
             ||||||||||||||||||||
Sbjct: 70668 ctttcagtacattttggtgc 70687
to top
>gb|AY107176.1| Zea mays PCO132849 mRNA sequence
          Length = 1222

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 73  gccgccggggccggggccga 92
           ||||||||||||||||||||
Sbjct: 462 gccgccggggccggggccga 481
to top
>gb|AC104892.10| Mus musculus chromosome 18, clone RP23-262H4, complete sequence
          Length = 190380

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 261   agagataccaatgagtatga 280
             ||||||||||||||||||||
Sbjct: 26823 agagataccaatgagtatga 26804
to top
>ref|NM_019362.1| Rattus norvegicus serine/threonine kinase 39, STE20/SPS1 homolog
           (yeast) (Stk39), mRNA
          Length = 3551

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 72  cgccgccggggccggggccg 91
           ||||||||||||||||||||
Sbjct: 542 cgccgccggggccggggccg 523
to top
>emb|BX296559.14| Zebrafish DNA sequence from clone CH211-285F17 in linkage group 24,
             complete sequence
          Length = 171695

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 350   attttggtgcatgtgccttt 369
             ||||||||||||||||||||
Sbjct: 10220 attttggtgcatgtgccttt 10201
to top
>gb|AF068261.1|AF068261 Rattus norvegicus pancreatic serine threonine kinase mRNA, complete
           cds
          Length = 1879

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 72  cgccgccggggccggggccg 91
           ||||||||||||||||||||
Sbjct: 307 cgccgccggggccggggccg 288
to top
>gb|AF057042.1|AF057042 Mycobacterium intracellulare tryptophan synthase beta subunit (trpB)
            and tryptophan synthase alpha subunit (trpA) genes,
            complete cds
          Length = 2081

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 23   tcgccaagcgctgcggcgtc 42
            ||||||||||||||||||||
Sbjct: 1773 tcgccaagcgctgcggcgtc 1754
to top
>emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I, complete sequence,
              strain 2308
          Length = 2121359

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 73     gccgccggggccggggccga 92
              ||||||||||||||||||||
Sbjct: 687085 gccgccggggccggggccga 687104
to top
>dbj|D88190.1| Rattus norvegicus mRNA for protein kinase PASK, complete cds
          Length = 3551

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 72  cgccgccggggccggggccg 91
           ||||||||||||||||||||
Sbjct: 542 cgccgccggggccggggccg 523


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,134,546
Number of Sequences: 3902068
Number of extensions: 3134546
Number of successful extensions: 67323
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66894
Number of HSP's gapped (non-prelim): 421
length of query: 399
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 377
effective length of database: 17,147,199,772
effective search space: 6464494314044
effective search space used: 6464494314044
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top