Clone Information

BLAST Search Result

Clone Name	bags39l15
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	YNC2_YEAST (P53972) Hypothetical 56.2 kDa protein in UME3-HDA1 i...	79	5e-15
2	RSMB_BACSU (P94464) Ribosomal RNA small subunit methyltransferas...	70	2e-12
3	NOL1_HUMAN (P46087) Proliferating-cell nucleolar antigen p120 (P...	62	1e-09
4	Y026_METJA (Q60343) Hypothetical protein MJ0026	61	1e-09
5	RSMB_HAEIN (P44788) Ribosomal RNA small subunit methyltransferas...	55	8e-08
6	RSMB_SHEON (Q8EKR0) Ribosomal RNA small subunit methyltransferas...	54	2e-07
7	RSMB_SYNY3 (P72943) Ribosomal RNA small subunit methyltransferas...	53	5e-07
8	RSMB_PSESM (Q88B41) Ribosomal RNA small subunit methyltransferas...	52	7e-07
9	RSMB_PSEAE (Q9I7A9) Ribosomal RNA small subunit methyltransferas...	52	1e-06
10	RSMB_VIBCH (Q9KVU5) Ribosomal RNA small subunit methyltransferas...	51	1e-06
11	RSMB_PSEPK (Q88RR3) Ribosomal RNA small subunit methyltransferas...	51	1e-06
12	RSMB_XYLFA (Q9PEV0) Ribosomal RNA small subunit methyltransferas...	51	1e-06
13	RSMB_XYLFT (Q87AR1) Ribosomal RNA small subunit methyltransferas...	51	2e-06
14	RSMB_XANAC (Q8PG22) Ribosomal RNA small subunit methyltransferas...	50	3e-06
15	RSMB_COXBU (P45679) Ribosomal RNA small subunit methyltransferas...	50	3e-06
16	RSMB_SHIFL (Q7UBD3) Ribosomal RNA small subunit methyltransferas...	49	1e-05
17	RSMB_SALTY (Q8ZLM5) Ribosomal RNA small subunit methyltransferas...	48	2e-05
18	RSMB_SALTI (Q8Z1X1) Ribosomal RNA small subunit methyltransferas...	48	2e-05
19	RSMB_ECOLI (P36929) Ribosomal RNA small subunit methyltransferas...	48	2e-05
20	YEBU_ECOLI (P76273) Hypothetical protein yebU	47	3e-05
21	RSMB_ECO57 (Q8XEE5) Ribosomal RNA small subunit methyltransferas...	47	3e-05
22	RSMB_ECOL6 (Q8FD12) Ribosomal RNA small subunit methyltransferas...	47	4e-05
23	RSMB_PASMU (Q9CKP7) Ribosomal RNA small subunit methyltransferas...	46	6e-05
24	RSMB_VIBVY (Q7MGK4) Ribosomal RNA small subunit methyltransferas...	45	1e-04
25	RSMB_VIBVU (Q8DDE5) Ribosomal RNA small subunit methyltransferas...	45	1e-04
26	RSMB_VIBPA (Q87KD3) Ribosomal RNA small subunit methyltransferas...	45	1e-04
27	RSMB_XANCP (Q8P4G1) Ribosomal RNA small subunit methyltransferas...	43	4e-04
28	RSMB_YERPE (Q8ZJ81) Ribosomal RNA small subunit methyltransferas...	42	9e-04
29	RSMB_PHOLL (Q7MYI0) Ribosomal RNA small subunit methyltransferas...	40	0.004
30	RSMB_HAEDU (Q7VKC4) Ribosomal RNA small subunit methyltransferas...	38	0.013
31	Y1407_MYCTU (P71675) Hypothetical protein Rv1407/MT1451	37	0.022
32	NCL1_YEAST (P38205) Putative methyltransferase NCL1 (EC 2.1.1.-)	35	0.084
33	RRMJ_SHIFL (P0C0S0) Ribosomal RNA large subunit methyltransferas...	35	0.11
34	RRMJ_ECOLI (P0C0R7) Ribosomal RNA large subunit methyltransferas...	35	0.11
35	RRMJ_ECOL6 (P0C0R9) Ribosomal RNA large subunit methyltransferas...	35	0.11
36	RRMJ_ECO57 (P0C0R8) Ribosomal RNA large subunit methyltransferas...	35	0.11
37	RRMJ_SALTY (Q8ZLS7) Ribosomal RNA large subunit methyltransferas...	35	0.11
38	RRMJ_SALTI (Q8Z3H3) Ribosomal RNA large subunit methyltransferas...	35	0.11
39	RRMJ_SALPA (Q5PLC1) Ribosomal RNA large subunit methyltransferas...	35	0.11
40	RRMJ_SALCH (Q57JH1) Ribosomal RNA large subunit methyltransferas...	35	0.11
41	RRMJ_PHOPR (Q6LUJ9) Ribosomal RNA large subunit methyltransferas...	35	0.14
42	RRMJ_IDILO (Q5QXK8) Ribosomal RNA large subunit methyltransferas...	35	0.14
43	RRMJ_VIBPA (Q87LZ4) Ribosomal RNA large subunit methyltransferas...	34	0.19
44	RRMJ_ERWCT (Q6D9B9) Ribosomal RNA large subunit methyltransferas...	34	0.19
45	RRMJ_PASMU (Q9CNJ3) Ribosomal RNA large subunit methyltransferas...	34	0.24
46	RRMJ_COLP3 (Q47YJ3) Ribosomal RNA large subunit methyltransferas...	33	0.32
47	YLH4_SCHPO (Q9HGQ2) Hypothetical protein C17D4.04 in chromosome I	32	0.71
48	RRMJ_TREDE (Q73L97) Ribosomal RNA large subunit methyltransferas...	32	0.71
49	PIMT_AERPE (Q9YDA1) Protein-L-isoaspartate O-methyltransferase (...	32	0.71
50	RRMJ_VIBF1 (Q5E7M3) Ribosomal RNA large subunit methyltransferas...	32	0.92
51	UBP49_MOUSE (Q6P9L4) Ubiquitin carboxyl-terminal hydrolase 49 (E...	32	1.2
52	RRMJ_PHOLL (Q7MYY0) Ribosomal RNA large subunit methyltransferas...	32	1.2
53	RRMJ_MANSM (Q65TZ0) Ribosomal RNA large subunit methyltransferas...	32	1.2
54	RRMJ_HAEDU (Q7VLF2) Ribosomal RNA large subunit methyltransferas...	32	1.2
55	RRMJ_HAEIN (P45162) Ribosomal RNA large subunit methyltransferas...	31	1.6
56	RRMJ_HAEI8 (Q4QKJ2) Ribosomal RNA large subunit methyltransferas...	31	1.6
57	RRMJ_LEGPH (Q5ZRT1) Ribosomal RNA large subunit methyltransferas...	31	1.6
58	RRMJ_LEGPA (Q5X1A0) Ribosomal RNA large subunit methyltransferas...	31	1.6
59	DHE4_GIBFU (Q96VJ7) NADP-specific glutamate dehydrogenase (EC 1....	31	1.6
60	DHE4_BOTCI (O93934) NADP-specific glutamate dehydrogenase (EC 1....	31	1.6
61	RRMJ_VIBVY (Q7MI01) Ribosomal RNA large subunit methyltransferas...	31	2.1
62	RRMJ_VIBVU (Q8DBW7) Ribosomal RNA large subunit methyltransferas...	31	2.1
63	RRMJ_SHEON (Q8EHM3) Ribosomal RNA large subunit methyltransferas...	31	2.1
64	DHE4_PENCH (Q9URS1) NADP-specific glutamate dehydrogenase (EC 1....	30	2.7
65	RRMJ_PSEF5 (Q4KIG3) Ribosomal RNA large subunit methyltransferas...	30	2.7
66	RRMJ_PSEPK (Q88DV0) Ribosomal RNA large subunit methyltransferas...	30	2.7
67	DHE4_EMENI (P18819) NADP-specific glutamate dehydrogenase (EC 1....	30	2.7
68	UROM_BOVIN (P48733) Uromodulin precursor (Tamm-Horsfall urinary ...	30	3.5
69	RRMJ_DESVH (Q729T9) Ribosomal RNA large subunit methyltransferas...	30	3.5
70	RRMJ_PSEU2 (Q4ZNQ4) Ribosomal RNA large subunit methyltransferas...	30	3.5
71	RRMJ_PSESM (Q87WP7) Ribosomal RNA large subunit methyltransferas...	30	3.5
72	RRMJ_PSE14 (Q48E69) Ribosomal RNA large subunit methyltransferas...	30	3.5
73	RRMJ_LEGPL (Q5WT13) Ribosomal RNA large subunit methyltransferas...	30	3.5
74	YL042_MIMIV (Q5UPB9) Putative ankyrin repeat protein L42	30	3.5
75	RL15_METVA (P14032) 50S ribosomal protein L15P	30	4.6
76	ZDH21_PONPY (Q5RB84) Probable palmitoyltransferase ZDHHC21 (EC 2...	30	4.6
77	ZDH21_MOUSE (Q9D270) Probable palmitoyltransferase ZDHHC21 (EC 2...	30	4.6
78	ZDH21_HUMAN (Q8IVQ6) Probable palmitoyltransferase ZDHHC21 (EC 2...	30	4.6
79	UBIE_SHEON (Q8E9R7) Ubiquinone/menaquinone biosynthesis methyltr...	29	6.0
80	RUMA_SHEON (Q8EBQ3) 23S rRNA (uracil-5-)-methyltransferase rumA ...	29	7.8
81	DHE4_YEAST (P07262) NADP-specific glutamate dehydrogenase 1 (EC ...	29	7.8
82	SYNC_HUMAN (O43776) Asparaginyl-tRNA synthetase, cytoplasmic (EC...	29	7.8
83	RL15_METMP (Q6LXD1) 50S ribosomal protein L15P	29	7.8
84	DHE5_YEAST (P39708) NADP-specific glutamate dehydrogenase 2 (EC ...	29	7.8

>YNC2_YEAST (P53972) Hypothetical 56.2 kDa protein in UME3-HDA1 intergenic|
           region
          Length = 490

 Score = 79.3 bits (194), Expect = 5e-15
 Identities = 58/181 (32%), Positives = 90/181 (49%), Gaps = 25/181 (13%)
 Frame = +1

Query: 22  VEEYIMLHKDTFKIALQKICVKRKVSNVEDL-LSEKTTVK-PKPRFVRVNTLKT-TTGSV 192
           +++Y++  K      + K+ +K KV  + +L LSE  +   P  R++R+N LK    G  
Sbjct: 110 IKDYVLKFKSPLHSEMVKLKLKLKVRELSELVLSEDISNDLPPVRWIRINPLKCHPNGET 169

Query: 193 IEVLSKMHKX-----DK-----------DNIXPDMLVLPPGTDMHKHPLVTDGKVLLQGK 324
             VL+++ K      DK           D   P++  + P   +  H L   GK+++Q +
Sbjct: 170 EPVLAELRKKFTLKVDKWSELVPGSIYYDEFIPNLFGIHPSDKITAHELYKHGKIIIQDR 229

Query: 325 ASCMVAAALSPQPGWKVIDACAAPGNKTVHLAALM------NGEGSIIACELNKERAKTL 486
           ASC  A  L+P P   VID+C+APGNKT H A+ +      +    I A E + ERAK L
Sbjct: 230 ASCFPAHILNPGPSDIVIDSCSAPGNKTTHTASYIYPEPPKDNNTRIYAFEKDPERAKVL 289

Query: 487 Q 489
           Q
Sbjct: 290 Q 290

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>RSMB_BACSU (P94464) Ribosomal RNA small subunit methyltransferase B (EC|
           2.1.1.-) (rRNA (cytosine-C(5)-)-methyltransferase)
          Length = 447

 Score = 70.5 bits (171), Expect = 2e-12
 Identities = 38/118 (32%), Positives = 69/118 (58%), Gaps = 1/118 (0%)
 Frame = +1

Query: 139 PKPRFVRVNTLKTTTGSVIEVLSKMH-KXDKDNIXPDMLVLPPGTDMHKHPLVTDGKVLL 315
           P  + +RVN +K     +++ ++    + +K ++  D + L  GT    H    +G+V +
Sbjct: 177 PPKQTLRVNQMKADRAELLDQMAAEGIEVEKGDLAEDAVKLLKGTIAGTH-FFQNGEVSI 235

Query: 316 QGKASCMVAAALSPQPGWKVIDACAAPGNKTVHLAALMNGEGSIIACELNKERAKTLQ 489
           Q ++S +VA AL P+    V+DACAAPG K+ H+A LM  +GS+ + +L+K + K ++
Sbjct: 236 QDESSMLVARALDPKSDETVLDACAAPGGKSAHIAELMKNKGSVTSLDLHKHKVKLIK 293

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>NOL1_HUMAN (P46087) Proliferating-cell nucleolar antigen p120|
           (Proliferation-associated nucleolar protein p120)
          Length = 855

 Score = 61.6 bits (148), Expect = 1e-09
 Identities = 39/123 (31%), Positives = 60/123 (48%), Gaps = 7/123 (5%)
 Frame = +1

Query: 139 PKPRFVRVNTLKTTTGSVIEVLSKMHKXDKDNIXP-------DMLVLPPGTDMHKHPLVT 297
           P+P  +R NTLKT    + + L         N+ P        ++V      +   P   
Sbjct: 307 PRPVTLRTNTLKTRRRDLAQALINRGV----NLDPLGKWSKTGLVVYDSSVPIGATPEYL 362

Query: 298 DGKVLLQGKASCMVAAALSPQPGWKVIDACAAPGNKTVHLAALMNGEGSIIACELNKERA 477
            G  +LQG +S +   AL+PQ   +++D C APG KT ++A LM   G I+A + N ER 
Sbjct: 363 AGHYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYMAQLMKNTGVILANDANAERL 422

Query: 478 KTL 486
           K++
Sbjct: 423 KSV 425

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>Y026_METJA (Q60343) Hypothetical protein MJ0026|
          Length = 274

 Score = 61.2 bits (147), Expect = 1e-09
 Identities = 41/123 (33%), Positives = 62/123 (50%), Gaps = 7/123 (5%)
 Frame = +1

Query: 142 KPRFVRVNTLKTTTGSVIEVLSKMHKXDKDNIXPDMLVLPPGTDMHKHPLVTD------- 300
           K +F+RVNTLK       EVL K  + +   +  +   L    ++ K P           
Sbjct: 9   KMQFIRVNTLKINP----EVLKK--RLENKGVVLEKTFLDYAFEVKKSPFSIGSTPEYLF 62

Query: 301 GKVLLQGKASCMVAAALSPQPGWKVIDACAAPGNKTVHLAALMNGEGSIIACELNKERAK 480
           G  + Q  +S +    L+P+    ++D CAAPG KT HLA LM  +G+I+A E++K R K
Sbjct: 63  GYYMPQSISSMIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTK 122

Query: 481 TLQ 489
            L+
Sbjct: 123 ALK 125

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>RSMB_HAEIN (P44788) Ribosomal RNA small subunit methyltransferase B (EC|
           2.1.1.-) (rRNA (cytosine-C(5)-)-methyltransferase) (16S
           rRNA m5C967 methyltransferase)
          Length = 451

 Score = 55.5 bits (132), Expect = 8e-08
 Identities = 38/136 (27%), Positives = 67/136 (49%)
 Frame = +1

Query: 82  VKRKVSNVEDLLSEKTTVKPKPRFVRVNTLKTTTGSVIEVLSKMHKXDKDNIXPDMLVLP 261
           +K+   N  +++ E    KP P ++RVN+ K    +   +L +     K +  P+ L L 
Sbjct: 167 LKKAYPNWREII-EANNQKP-PMWLRVNSQKNALETYRTLLEEQGVSSKTSHHPNALCLD 224

Query: 262 PGTDMHKHPLVTDGKVLLQGKASCMVAAALSPQPGWKVIDACAAPGNKTVHLAALMNGEG 441
               + K P   +G V +Q  ++   A  L P+    ++DACAAPG KT H+  L   + 
Sbjct: 225 IPIAVQKLPHFEEGAVTVQDLSAQWAATLLEPKNEEWILDACAAPGGKTTHILELA-PQA 283

Query: 442 SIIACELNKERAKTLQ 489
           ++IA ++   R K ++
Sbjct: 284 NVIALDVESHRLKRVE 299

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>RSMB_SHEON (Q8EKR0) Ribosomal RNA small subunit methyltransferase B (EC|
           2.1.1.-) (rRNA (cytosine-C(5)-)-methyltransferase) (16S
           rRNA m5C967 methyltransferase)
          Length = 428

 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 33/115 (28%), Positives = 55/115 (47%)
 Frame = +1

Query: 145 PRFVRVNTLKTTTGSVIEVLSKMHKXDKDNIXPDMLVLPPGTDMHKHPLVTDGKVLLQGK 324
           P ++R N L  +    +  L K+       +  D ++L    D+   PL  +G   +Q  
Sbjct: 168 PMWLRNNRLSQSRDEYLAALDKLEIDASAGLSDDAILLAAPKDVATLPLFLEGAASVQDG 227

Query: 325 ASCMVAAALSPQPGWKVIDACAAPGNKTVHLAALMNGEGSIIACELNKERAKTLQ 489
           A+   A  L+PQ    ++DACAAPG K+ HL  L      +IA + + +R + +Q
Sbjct: 228 AAQWAATLLAPQANELILDACAAPGGKSCHLLEL-EPSIKLIAVDFDAKRLERVQ 281

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>RSMB_SYNY3 (P72943) Ribosomal RNA small subunit methyltransferase B (EC|
           2.1.1.-) (rRNA (cytosine-C(5)-)-methyltransferase)
          Length = 446

 Score = 52.8 bits (125), Expect = 5e-07
 Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 7/118 (5%)
 Frame = +1

Query: 154 VRVNTLKTTTGSVIEVLSKMHKXDKDNIXPDMLVLPPGTDMH-------KHPLVTDGKVL 312
           +R+N LKT+   V + L++++          M  LP G  +        + P   +G   
Sbjct: 181 LRINPLKTSRVEVAQSLAELNLT-----TTAMAGLPQGLRLGGKTGAITQLPGFAEGWWT 235

Query: 313 LQGKASCMVAAALSPQPGWKVIDACAAPGNKTVHLAALMNGEGSIIACELNKERAKTL 486
           +Q  ++  VA  L+PQP   + D CAAPG KT H+A LM  +G I A + +  R + L
Sbjct: 236 VQDASAQWVAQILNPQPEETIFDVCAAPGGKTTHIAELMGDQGQIYAGDRHGWRLQKL 293

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>RSMB_PSESM (Q88B41) Ribosomal RNA small subunit methyltransferase B (EC|
           2.1.1.-) (rRNA (cytosine-C(5)-)-methyltransferase) (16S
           rRNA m5C967 methyltransferase)
          Length = 448

 Score = 52.4 bits (124), Expect = 7e-07
 Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 1/111 (0%)
 Frame = +1

Query: 145 PRFVRVNTLKTTTGSVIEVLSKMH-KXDKDNIXPDMLVLPPGTDMHKHPLVTDGKVLLQG 321
           P  +RVN         +E+L     +        D +VL    D+   P   +G + +Q 
Sbjct: 170 PMILRVNRRHQRRDQYLELLKTAGLEASACTFSQDGIVLAEPCDVRSLPGFAEGWISVQD 229

Query: 322 KASCMVAAALSPQPGWKVIDACAAPGNKTVHLAALMNGEGSIIACELNKER 474
           +A+ + A  L   PG +V+DAC APG KT HL  +      ++A +L  +R
Sbjct: 230 EAAQLAADLLELAPGQRVLDACCAPGGKTCHLLEVQPQLSGVVAVDLEAKR 280

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>RSMB_PSEAE (Q9I7A9) Ribosomal RNA small subunit methyltransferase B (EC|
           2.1.1.-) (rRNA (cytosine-C(5)-)-methyltransferase) (16S
           rRNA m5C967 methyltransferase)
          Length = 434

 Score = 51.6 bits (122), Expect = 1e-06
 Identities = 26/77 (33%), Positives = 41/77 (53%)
 Frame = +1

Query: 244 DMLVLPPGTDMHKHPLVTDGKVLLQGKASCMVAAALSPQPGWKVIDACAAPGNKTVHLAA 423
           D + L    D+ + P   +G+V +Q +A+ + A  L   PG +V+DAC APG KT HL  
Sbjct: 204 DGIQLAAPRDVRELPGFAEGRVSVQDEAAQLAAEQLESAPGQRVLDACCAPGGKTCHLLE 263

Query: 424 LMNGEGSIIACELNKER 474
                  ++A +L + R
Sbjct: 264 TQPELAEVVAVDLEESR 280

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>RSMB_VIBCH (Q9KVU5) Ribosomal RNA small subunit methyltransferase B (EC|
           2.1.1.-) (rRNA (cytosine-C(5)-)-methyltransferase) (16S
           rRNA m5C967 methyltransferase)
          Length = 434

 Score = 51.2 bits (121), Expect = 1e-06
 Identities = 27/82 (32%), Positives = 44/82 (53%)
 Frame = +1

Query: 244 DMLVLPPGTDMHKHPLVTDGKVLLQGKASCMVAAALSPQPGWKVIDACAAPGNKTVHLAA 423
           D L L    D+H+ P   +G V +Q  A+ +    L+PQ G  ++D CAAPG KT H+  
Sbjct: 212 DALCLETPCDVHQLPGFAEGWVSVQDAAAQLALTYLAPQAGELILDCCAAPGGKTAHILE 271

Query: 424 LMNGEGSIIACELNKERAKTLQ 489
               E  ++A + ++ R K ++
Sbjct: 272 -RTPESQVVAIDCDETRLKRVR 292

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>RSMB_PSEPK (Q88RR3) Ribosomal RNA small subunit methyltransferase B (EC|
           2.1.1.-) (rRNA (cytosine-C(5)-)-methyltransferase) (16S
           rRNA m5C967 methyltransferase)
          Length = 436

 Score = 51.2 bits (121), Expect = 1e-06
 Identities = 28/77 (36%), Positives = 42/77 (54%)
 Frame = +1

Query: 244 DMLVLPPGTDMHKHPLVTDGKVLLQGKASCMVAAALSPQPGWKVIDACAAPGNKTVHLAA 423
           D +VL    D+   P   +G V +Q +A+ + A  L   PG +V+DAC APG KT HL  
Sbjct: 204 DGIVLAEACDVRGLPGFAEGWVSVQDEAAQLSADLLELAPGQRVLDACCAPGGKTCHLLE 263

Query: 424 LMNGEGSIIACELNKER 474
              G  +++A +L  +R
Sbjct: 264 AEAGLANMVAIDLEAKR 280

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>RSMB_XYLFA (Q9PEV0) Ribosomal RNA small subunit methyltransferase B (EC|
           2.1.1.-) (rRNA (cytosine-C(5)-)-methyltransferase) (16S
           rRNA m5C967 methyltransferase)
          Length = 421

 Score = 51.2 bits (121), Expect = 1e-06
 Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
 Frame = +1

Query: 130 TVKPKPRFVRVNTLKTTTGSVIEVLSKMH-KXDKDNIXPDMLVLPPGTDMHKHPLVTDGK 306
           ++KP P ++RVN       + ++ L     +     + P+ L L     + + P    G+
Sbjct: 155 SLKPAPMWLRVNLRYGDRHTYVQRLQAAGLEAVPSGLVPEALALDCSMPVLQLPGFQAGE 214

Query: 307 VLLQGKASCMVAAALSPQPGWKVIDACAAPGNKTVHL 417
           V +Q  ++  VAA LSP P  +V+DACAAPG K  HL
Sbjct: 215 VSVQDLSAQQVAALLSPAPHARVLDACAAPGGKAAHL 251

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>RSMB_XYLFT (Q87AR1) Ribosomal RNA small subunit methyltransferase B (EC|
           2.1.1.-) (rRNA (cytosine-C(5)-)-methyltransferase) (16S
           rRNA m5C967 methyltransferase)
          Length = 431

 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
 Frame = +1

Query: 130 TVKPKPRFVRVNTLKTTTGSVIEVLSKMH-KXDKDNIXPDMLVLPPGTDMHKHPLVTDGK 306
           ++KP P ++RVN       + ++ L     +     + P+ L L     + + P    G+
Sbjct: 163 SLKPAPMWLRVNLRYGDRHTYVQRLQAAGLEAVPSGLVPEALALDCSVPVVQLPGFQGGE 222

Query: 307 VLLQGKASCMVAAALSPQPGWKVIDACAAPGNKTVHL 417
           V +Q  ++  VAA LSP P  +++DACAAPG K  HL
Sbjct: 223 VSVQDLSAQQVAALLSPAPHARLLDACAAPGGKAAHL 259

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>RSMB_XANAC (Q8PG22) Ribosomal RNA small subunit methyltransferase B (EC|
           2.1.1.-) (rRNA (cytosine-C(5)-)-methyltransferase) (16S
           rRNA m5C967 methyltransferase)
          Length = 436

 Score = 50.4 bits (119), Expect = 3e-06
 Identities = 33/116 (28%), Positives = 59/116 (50%), Gaps = 1/116 (0%)
 Frame = +1

Query: 145 PRFVRVNTLKTTTGSVIEVLSKMH-KXDKDNIXPDMLVLPPGTDMHKHPLVTDGKVLLQG 321
           P ++RV   +T   + +  L+++      D + PD + L     + + P   +G V +Q 
Sbjct: 173 PMWLRVQRSRTDPATYVARLAELDIVAHTDAVLPDAVRLHNAVPVSQLPGFAEGDVSVQD 232

Query: 322 KASCMVAAALSPQPGWKVIDACAAPGNKTVHLAALMNGEGSIIACELNKERAKTLQ 489
            ++  VA AL+  P  +V+DACAAPG K  HL     G   ++A +++  R + +Q
Sbjct: 233 GSAQQVADALTLAPSARVLDACAAPGGKAAHLLERHPGL-QLVALDVDARRLERVQ 287

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>RSMB_COXBU (P45679) Ribosomal RNA small subunit methyltransferase B (EC|
           2.1.1.-) (rRNA (cytosine-C(5)-)-methyltransferase)
          Length = 430

 Score = 50.1 bits (118), Expect = 3e-06
 Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 1/116 (0%)
 Frame = +1

Query: 145 PRFVRVNTLKTTTGSVIEVLSKMHKXDKD-NIXPDMLVLPPGTDMHKHPLVTDGKVLLQG 321
           P  +RVN  K +    +E+L + +   K  +  P  + L     +H+ P   +G   +Q 
Sbjct: 165 PMTLRVNLTKISREIYLEMLDQKNISAKPLDFLPAAIQLEKPCSVHQLPGFNEGYCYIQD 224

Query: 322 KASCMVAAALSPQPGWKVIDACAAPGNKTVHLAALMNGEGSIIACELNKERAKTLQ 489
            A    A  L  +    V+DACAAPG+KT H+  +     +++A + NK+R   ++
Sbjct: 225 AAGQFAAYLLKLENNQTVLDACAAPGSKTSHILEVNPHLKTLVAIDNNKQRLNRIK 280

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>RSMB_SHIFL (Q7UBD3) Ribosomal RNA small subunit methyltransferase B (EC|
           2.1.1.-) (rRNA (cytosine-C(5)-)-methyltransferase) (16S
           rRNA m5C967 methyltransferase)
          Length = 429

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 33/121 (27%), Positives = 60/121 (49%), Gaps = 1/121 (0%)
 Frame = +1

Query: 115 LSEKTTVKPKPRFVRVNTLKTTTGSVIEVLSKMH-KXDKDNIXPDMLVLPPGTDMHKHPL 291
           ++E    +P P ++R+N    +  S + +L +   K       PD + L     +H  P 
Sbjct: 164 IAEANNQRP-PMWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPG 222

Query: 292 VTDGKVLLQGKASCMVAAALSPQPGWKVIDACAAPGNKTVHLAALMNGEGSIIACELNKE 471
             DG V +Q  ++      L+PQ G  ++D CAAPG KT H+  +   E  ++A +++++
Sbjct: 223 FEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVA-PEAQVVAVDIDEQ 281

Query: 472 R 474
           R
Sbjct: 282 R 282

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>RSMB_SALTY (Q8ZLM5) Ribosomal RNA small subunit methyltransferase B (EC|
           2.1.1.-) (rRNA (cytosine-C(5)-)-methyltransferase) (16S
           rRNA m5C967 methyltransferase)
          Length = 429

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 25/78 (32%), Positives = 43/78 (55%)
 Frame = +1

Query: 241 PDMLVLPPGTDMHKHPLVTDGKVLLQGKASCMVAAALSPQPGWKVIDACAAPGNKTVHLA 420
           PD + L     +H  P   +G V +Q  ++   A  L+PQ G  ++D CAAPG KT H+ 
Sbjct: 206 PDAVRLETPAPVHALPGFAEGWVTVQDASAQGCAVFLAPQNGEHILDLCAAPGGKTTHIL 265

Query: 421 ALMNGEGSIIACELNKER 474
            +   E  ++A +++++R
Sbjct: 266 EVA-PEADVLAVDIDEQR 282

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>RSMB_SALTI (Q8Z1X1) Ribosomal RNA small subunit methyltransferase B (EC|
           2.1.1.-) (rRNA (cytosine-C(5)-)-methyltransferase) (16S
           rRNA m5C967 methyltransferase)
          Length = 429

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 25/78 (32%), Positives = 43/78 (55%)
 Frame = +1

Query: 241 PDMLVLPPGTDMHKHPLVTDGKVLLQGKASCMVAAALSPQPGWKVIDACAAPGNKTVHLA 420
           PD + L     +H  P   +G V +Q  ++   A  L+PQ G  ++D CAAPG KT H+ 
Sbjct: 206 PDAVRLETPAPVHALPGFAEGWVTVQDASAQGCAVFLAPQNGEHILDLCAAPGGKTTHIL 265

Query: 421 ALMNGEGSIIACELNKER 474
            +   E  ++A +++++R
Sbjct: 266 EVA-PEADVLAVDIDEQR 282

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>RSMB_ECOLI (P36929) Ribosomal RNA small subunit methyltransferase B (EC|
           2.1.1.-) (rRNA (cytosine-C(5)-)-methyltransferase) (16S
           rRNA m5C967 methyltransferase)
          Length = 429

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 1/111 (0%)
 Frame = +1

Query: 145 PRFVRVNTLKTTTGSVIEVLSKMH-KXDKDNIXPDMLVLPPGTDMHKHPLVTDGKVLLQG 321
           P ++R+N    +  S + +L +   K       PD + L     +H  P   DG V +Q 
Sbjct: 173 PMWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQD 232

Query: 322 KASCMVAAALSPQPGWKVIDACAAPGNKTVHLAALMNGEGSIIACELNKER 474
            ++      L+PQ G  ++D CAAPG KT H+  +   E  ++A +++++R
Sbjct: 233 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVA-PEAQVVAVDIDEQR 282

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>YEBU_ECOLI (P76273) Hypothetical protein yebU|
          Length = 479

 Score = 47.0 bits (110), Expect = 3e-05
 Identities = 40/135 (29%), Positives = 62/135 (45%), Gaps = 18/135 (13%)
 Frame = +1

Query: 136 KPKPRFVRVNTLKTTTGSVIEVLSKMHKX-------------DKDNIXPDMLVLPPGTDM 276
           +P  R +RVNTLK +    +++ +                  ++DN       LP G+  
Sbjct: 35  RPLRRSIRVNTLKISVADFLQLTAPYGWTLTPIPWCEEGFWIERDNED----ALPLGSTA 90

Query: 277 HKHPLVTDGKVLLQGKASCMVAAAL-----SPQPGWKVIDACAAPGNKTVHLAALMNGEG 441
                   G   +Q  +S +  AAL     +PQ   +V+D  AAPG+KT  ++A MN EG
Sbjct: 91  EH----LSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQISARMNNEG 143

Query: 442 SIIACELNKERAKTL 486
           +I+A E +  R K L
Sbjct: 144 AILANEFSASRVKVL 158

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>RSMB_ECO57 (Q8XEE5) Ribosomal RNA small subunit methyltransferase B (EC|
           2.1.1.-) (rRNA (cytosine-C(5)-)-methyltransferase) (16S
           rRNA m5C967 methyltransferase)
          Length = 429

 Score = 47.0 bits (110), Expect = 3e-05
 Identities = 25/78 (32%), Positives = 42/78 (53%)
 Frame = +1

Query: 241 PDMLVLPPGTDMHKHPLVTDGKVLLQGKASCMVAAALSPQPGWKVIDACAAPGNKTVHLA 420
           PD + L     +H  P   DG V +Q  ++      L+PQ G  ++D CAAPG KT H+ 
Sbjct: 206 PDAVRLETPAPVHALPGFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHIL 265

Query: 421 ALMNGEGSIIACELNKER 474
            +   E  ++A +++++R
Sbjct: 266 EVA-PEAQVVAVDIDEQR 282

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>RSMB_ECOL6 (Q8FD12) Ribosomal RNA small subunit methyltransferase B (EC|
           2.1.1.-) (rRNA (cytosine-C(5)-)-methyltransferase) (16S
           rRNA m5C967 methyltransferase)
          Length = 429

 Score = 46.6 bits (109), Expect = 4e-05
 Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 1/111 (0%)
 Frame = +1

Query: 145 PRFVRVNTLKTTTGSVIEVLSKMH-KXDKDNIXPDMLVLPPGTDMHKHPLVTDGKVLLQG 321
           P ++RVN    +  S + +L +   K       PD + L     +H  P   +G V +Q 
Sbjct: 173 PMWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVQLETPAPVHALPGFEEGWVTVQD 232

Query: 322 KASCMVAAALSPQPGWKVIDACAAPGNKTVHLAALMNGEGSIIACELNKER 474
            ++      L+PQ G  ++D CAAPG KT H+  +   E  ++A +++++R
Sbjct: 233 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVA-PEAQVLAVDIDEQR 282

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>RSMB_PASMU (Q9CKP7) Ribosomal RNA small subunit methyltransferase B (EC|
           2.1.1.-) (rRNA (cytosine-C(5)-)-methyltransferase) (16S
           rRNA m5C967 methyltransferase)
          Length = 446

 Score = 45.8 bits (107), Expect = 6e-05
 Identities = 34/120 (28%), Positives = 57/120 (47%)
 Frame = +1

Query: 121 EKTTVKPKPRFVRVNTLKTTTGSVIEVLSKMHKXDKDNIXPDMLVLPPGTDMHKHPLVTD 300
           E    KP P ++RVN  K +T +   +L++     +    P  L L     + + P   +
Sbjct: 174 EANNHKP-PMWLRVNQQKNSTETYRTLLAEQGIEAEKADNPCALRLLQPVAVSQLPAFHE 232

Query: 301 GKVLLQGKASCMVAAALSPQPGWKVIDACAAPGNKTVHLAALMNGEGSIIACELNKERAK 480
           G V +Q   +   A  L+P+ G  ++DACAAPG KT H+      +  ++A ++   R K
Sbjct: 233 GAVSVQDVNAQWSALLLAPENGELILDACAAPGGKTTHILE-QAPQAHVVALDVEATRLK 291

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>RSMB_VIBVY (Q7MGK4) Ribosomal RNA small subunit methyltransferase B (EC|
           2.1.1.-) (rRNA (cytosine-C(5)-)-methyltransferase) (16S
           rRNA m5C967 methyltransferase)
          Length = 426

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 29/113 (25%), Positives = 53/113 (46%), Gaps = 1/113 (0%)
 Frame = +1

Query: 145 PRFVRVNTLKTTTGSVIEVLSKMH-KXDKDNIXPDMLVLPPGTDMHKHPLVTDGKVLLQG 321
           P ++RVN         +++L   +      +   D + L    D+H  P    G V +Q 
Sbjct: 170 PMWLRVNHAHHDRDEYLQLLKNANIDSTLHSEAMDAIKLAAPCDVHSLPGFEQGWVSVQD 229

Query: 322 KASCMVAAALSPQPGWKVIDACAAPGNKTVHLAALMNGEGSIIACELNKERAK 480
            A+ +    L P+ G  ++D CAAPG KT H+   ++    ++A + +++R K
Sbjct: 230 AAAQLSFNYLQPKDGELILDCCAAPGGKTAHILERVSAR-EVVALDCDEQRLK 281

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>RSMB_VIBVU (Q8DDE5) Ribosomal RNA small subunit methyltransferase B (EC|
           2.1.1.-) (rRNA (cytosine-C(5)-)-methyltransferase) (16S
           rRNA m5C967 methyltransferase)
          Length = 426

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 29/113 (25%), Positives = 53/113 (46%), Gaps = 1/113 (0%)
 Frame = +1

Query: 145 PRFVRVNTLKTTTGSVIEVLSKMH-KXDKDNIXPDMLVLPPGTDMHKHPLVTDGKVLLQG 321
           P ++RVN         +++L   +      +   D + L    D+H  P    G V +Q 
Sbjct: 170 PMWLRVNHAHHDRDEYLQLLKNANIDSTLHSEAMDAIKLAAPCDVHSLPGFEQGWVSVQD 229

Query: 322 KASCMVAAALSPQPGWKVIDACAAPGNKTVHLAALMNGEGSIIACELNKERAK 480
            A+ +    L P+ G  ++D CAAPG KT H+   ++    ++A + +++R K
Sbjct: 230 AAAQLSFNYLQPKDGELILDCCAAPGGKTAHILERVSAR-EVVALDCDEQRLK 281

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>RSMB_VIBPA (Q87KD3) Ribosomal RNA small subunit methyltransferase B (EC|
           2.1.1.-) (rRNA (cytosine-C(5)-)-methyltransferase) (16S
           rRNA m5C967 methyltransferase)
          Length = 427

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 1/113 (0%)
 Frame = +1

Query: 145 PRFVRVNTLKTTTGSVIEVLSKMHKXDKDNIXP-DMLVLPPGTDMHKHPLVTDGKVLLQG 321
           P ++RVN    T    + +L   +     +    D + L    D+ K P    G V +Q 
Sbjct: 170 PMWLRVNHQHHTRDEYLALLKNENIDSTPHTEAMDAIKLAAPCDVMKLPGFDKGWVSVQD 229

Query: 322 KASCMVAAALSPQPGWKVIDACAAPGNKTVHLAALMNGEGSIIACELNKERAK 480
            A+ +    L PQ G  ++D CAAPG KT H+    +G   ++A + +  R K
Sbjct: 230 AAAQLSINYLKPQDGELILDCCAAPGGKTAHILERTSG-SEVVAIDCDDTRLK 281

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>RSMB_XANCP (Q8P4G1) Ribosomal RNA small subunit methyltransferase B (EC|
           2.1.1.-) (rRNA (cytosine-C(5)-)-methyltransferase) (16S
           rRNA m5C967 methyltransferase)
          Length = 437

 Score = 43.1 bits (100), Expect = 4e-04
 Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
 Frame = +1

Query: 145 PRFVRVNTLKTTTGSVIEVLSKMH-KXDKDNIXPDMLVLPPGTDMHKHPLVTDGKVLLQG 321
           P ++RV   + +    +  L++       D +  D + L     + + P    G V +Q 
Sbjct: 174 PMWLRVPRARVSPAEYVARLAEQGITAHTDPVLADAVRLDTAVPVSQLPGFAQGDVSVQD 233

Query: 322 KASCMVAAALSPQPGWKVIDACAAPGNKTVHL 417
            ++  VA AL+  P  +V+DACAAPG K  HL
Sbjct: 234 GSAQQVADALALAPAARVLDACAAPGGKAAHL 265

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>RSMB_YERPE (Q8ZJ81) Ribosomal RNA small subunit methyltransferase B (EC|
           2.1.1.-) (rRNA (cytosine-C(5)-)-methyltransferase) (16S
           rRNA m5C967 methyltransferase)
          Length = 429

 Score = 42.0 bits (97), Expect = 9e-04
 Identities = 29/111 (26%), Positives = 55/111 (49%), Gaps = 1/111 (0%)
 Frame = +1

Query: 145 PRFVRVNTLKTTTGSVIEVLSKMH-KXDKDNIXPDMLVLPPGTDMHKHPLVTDGKVLLQG 321
           P ++RVN L  +    +E+L++     +   I  D + L     ++  P    G V +Q 
Sbjct: 173 PMWLRVNRLHHSRSEYLELLTQADINAEPHPIYRDAVRLITPCAVNHLPGFELGWVTVQD 232

Query: 322 KASCMVAAALSPQPGWKVIDACAAPGNKTVHLAALMNGEGSIIACELNKER 474
            ++      L PQ G +++D CAAPG KT H+      +  ++A +++++R
Sbjct: 233 ASAQGCVDLLDPQNGEQILDLCAAPGGKTTHILEAA-PKAHVLAVDIDEQR 282

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>RSMB_PHOLL (Q7MYI0) Ribosomal RNA small subunit methyltransferase B (EC|
           2.1.1.-) (rRNA (cytosine-C(5)-)-methyltransferase) (16S
           rRNA m5C967 methyltransferase)
          Length = 429

 Score = 39.7 bits (91), Expect = 0.004
 Identities = 24/85 (28%), Positives = 43/85 (50%)
 Frame = +1

Query: 235 IXPDMLVLPPGTDMHKHPLVTDGKVLLQGKASCMVAAALSPQPGWKVIDACAAPGNKTVH 414
           I P  + + PG D         G V +Q  ++      L P  G K++D CAAPG KT +
Sbjct: 212 ISPCPVTILPGFDK--------GWVTVQDLSAQECVELLKPINGEKILDLCAAPGGKTTY 263

Query: 415 LAALMNGEGSIIACELNKERAKTLQ 489
           +  +   E  ++A +++++R K ++
Sbjct: 264 ILEIA-PESQVVAVDIDEQRIKRVK 287

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>RSMB_HAEDU (Q7VKC4) Ribosomal RNA small subunit methyltransferase B (EC|
           2.1.1.-) (rRNA (cytosine-C(5)-)-methyltransferase) (16S
           rRNA m5C967 methyltransferase)
          Length = 435

 Score = 38.1 bits (87), Expect = 0.013
 Identities = 32/115 (27%), Positives = 50/115 (43%), Gaps = 5/115 (4%)
 Frame = +1

Query: 145 PRFVRVNTLKTTTGSVIEVLSKM--HKXDKDNIXPD---MLVLPPGTDMHKHPLVTDGKV 309
           P ++RVNT   T      +L  +     +     P     LV P   D  K P  + G  
Sbjct: 172 PMWIRVNTQHCTPQDYSALLGDLAVKTTNSSACLPSSAIQLVNPLSVD--KLPYFSRGWA 229

Query: 310 LLQGKASCMVAAALSPQPGWKVIDACAAPGNKTVHLAALMNGEGSIIACELNKER 474
            +Q   +   A  L+ + G  ++DACAAPG KT H+      +  +IA ++ + R
Sbjct: 230 TVQDCHAQWSATLLAAKNGEMILDACAAPGGKTTHILE-QAPQAKVIALDIEESR 283

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>Y1407_MYCTU (P71675) Hypothetical protein Rv1407/MT1451|
          Length = 457

 Score = 37.4 bits (85), Expect = 0.022
 Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
 Frame = +1

Query: 241 PDMLVLPPGTDMHKHPLVTDGKVLLQGKASCMVAAALSPQP----GWKVIDACAAPGNKT 408
           P  + LP G      P V DG+ L+Q + S +VA AL+  P      + +D CA PG KT
Sbjct: 225 PFAVYLPRGDPGRLAP-VRDGQALVQDEGSQLVARALTLAPVDGDTGRWLDLCAGPGGKT 283

Query: 409 VHLAAL-MNGEGSIIACELNKERA 477
             LA L +     + A E +  RA
Sbjct: 284 ALLAGLGLQCAARVTAVEPSPHRA 307

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>NCL1_YEAST (P38205) Putative methyltransferase NCL1 (EC 2.1.1.-)|
          Length = 684

 Score = 35.4 bits (80), Expect = 0.084
 Identities = 37/158 (23%), Positives = 61/158 (38%), Gaps = 34/158 (21%)
 Frame = +1

Query: 121 EKTTVKPKPRFVRVNTLKTTTGSVIEVLSKMHKXDKDNIX---------------PDMLV 255
           +KT   P P   R+   +   G V+ +  + H  +  N+                PD L 
Sbjct: 56  KKTCQAPLPLTFRITGSRKHAGEVLNLFKERHLPNLTNVEFEGEKIKAPVELPWYPDHLA 115

Query: 256 LP---PGTDMHKHP--------LVTD---GKVLLQGKASCMVAAALSPQPGWKVIDACAA 393
                P T + K+         LV +   G +  Q   S +    L  +P   V+D CAA
Sbjct: 116 WQLDVPKTVIRKNEQFAKTQRFLVVENAVGNISRQEAVSMIPPIVLEVKPHHTVLDMCAA 175

Query: 394 PGNKTVHLAALMNGE-----GSIIACELNKERAKTLQH 492
           PG+KT  L   ++ +     G ++A + +  R+  L H
Sbjct: 176 PGSKTAQLIEALHKDTDEPSGFVVANDADARRSHMLVH 213

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>RRMJ_SHIFL (P0C0S0) Ribosomal RNA large subunit methyltransferase J (EC|
           2.1.1.-) (rRNA (uridine-2'-O-)-methyltransferase) (23S
           rRNA m2U2552 methyltransferase)
          Length = 209

 Score = 35.0 bits (79), Expect = 0.11
 Identities = 15/35 (42%), Positives = 23/35 (65%)
 Frame = +1

Query: 358 QPGWKVIDACAAPGNKTVHLAALMNGEGSIIACEL 462
           +PG  V+D  AAPG  + ++   + G+G IIAC+L
Sbjct: 50  KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDL 84

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>RRMJ_ECOLI (P0C0R7) Ribosomal RNA large subunit methyltransferase J (EC|
           2.1.1.-) (rRNA (uridine-2'-O-)-methyltransferase) (23S
           rRNA m2U2552 methyltransferase) (Cell division protein
           ftsJ)
          Length = 209

 Score = 35.0 bits (79), Expect = 0.11
 Identities = 15/35 (42%), Positives = 23/35 (65%)
 Frame = +1

Query: 358 QPGWKVIDACAAPGNKTVHLAALMNGEGSIIACEL 462
           +PG  V+D  AAPG  + ++   + G+G IIAC+L
Sbjct: 50  KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDL 84

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>RRMJ_ECOL6 (P0C0R9) Ribosomal RNA large subunit methyltransferase J (EC|
           2.1.1.-) (rRNA (uridine-2'-O-)-methyltransferase) (23S
           rRNA m2U2552 methyltransferase)
          Length = 209

 Score = 35.0 bits (79), Expect = 0.11
 Identities = 15/35 (42%), Positives = 23/35 (65%)
 Frame = +1

Query: 358 QPGWKVIDACAAPGNKTVHLAALMNGEGSIIACEL 462
           +PG  V+D  AAPG  + ++   + G+G IIAC+L
Sbjct: 50  KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDL 84

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>RRMJ_ECO57 (P0C0R8) Ribosomal RNA large subunit methyltransferase J (EC|
           2.1.1.-) (rRNA (uridine-2'-O-)-methyltransferase) (23S
           rRNA m2U2552 methyltransferase)
          Length = 209

 Score = 35.0 bits (79), Expect = 0.11
 Identities = 15/35 (42%), Positives = 23/35 (65%)
 Frame = +1

Query: 358 QPGWKVIDACAAPGNKTVHLAALMNGEGSIIACEL 462
           +PG  V+D  AAPG  + ++   + G+G IIAC+L
Sbjct: 50  KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDL 84

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>RRMJ_SALTY (Q8ZLS7) Ribosomal RNA large subunit methyltransferase J (EC|
           2.1.1.-) (rRNA (uridine-2'-O-)-methyltransferase) (23S
           rRNA m2U2552 methyltransferase)
          Length = 208

 Score = 35.0 bits (79), Expect = 0.11
 Identities = 15/35 (42%), Positives = 23/35 (65%)
 Frame = +1

Query: 358 QPGWKVIDACAAPGNKTVHLAALMNGEGSIIACEL 462
           +PG  V+D  AAPG  + ++   + G+G IIAC+L
Sbjct: 50  KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDL 84

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>RRMJ_SALTI (Q8Z3H3) Ribosomal RNA large subunit methyltransferase J (EC|
           2.1.1.-) (rRNA (uridine-2'-O-)-methyltransferase) (23S
           rRNA m2U2552 methyltransferase)
          Length = 208

 Score = 35.0 bits (79), Expect = 0.11
 Identities = 15/35 (42%), Positives = 23/35 (65%)
 Frame = +1

Query: 358 QPGWKVIDACAAPGNKTVHLAALMNGEGSIIACEL 462
           +PG  V+D  AAPG  + ++   + G+G IIAC+L
Sbjct: 50  KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDL 84

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>RRMJ_SALPA (Q5PLC1) Ribosomal RNA large subunit methyltransferase J (EC|
           2.1.1.-) (rRNA (uridine-2'-O-)-methyltransferase) (23S
           rRNA m2U2552 methyltransferase)
          Length = 208

 Score = 35.0 bits (79), Expect = 0.11
 Identities = 15/35 (42%), Positives = 23/35 (65%)
 Frame = +1

Query: 358 QPGWKVIDACAAPGNKTVHLAALMNGEGSIIACEL 462
           +PG  V+D  AAPG  + ++   + G+G IIAC+L
Sbjct: 50  KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDL 84

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>RRMJ_SALCH (Q57JH1) Ribosomal RNA large subunit methyltransferase J (EC|
           2.1.1.-) (rRNA (uridine-2'-O-)-methyltransferase) (23S
           rRNA m2U2552 methyltransferase)
          Length = 208

 Score = 35.0 bits (79), Expect = 0.11
 Identities = 15/35 (42%), Positives = 23/35 (65%)
 Frame = +1

Query: 358 QPGWKVIDACAAPGNKTVHLAALMNGEGSIIACEL 462
           +PG  V+D  AAPG  + ++   + G+G IIAC+L
Sbjct: 50  KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDL 84

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>RRMJ_PHOPR (Q6LUJ9) Ribosomal RNA large subunit methyltransferase J (EC|
           2.1.1.-) (rRNA (uridine-2'-O-)-methyltransferase) (23S
           rRNA m2U2552 methyltransferase)
          Length = 209

 Score = 34.7 bits (78), Expect = 0.14
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = +1

Query: 358 QPGWKVIDACAAPGNKTVHLAALMNGEGSIIACEL 462
           +PG  V+D  AAPG  + + A ++  EG +IAC++
Sbjct: 50  KPGMTVVDLGAAPGGWSQYAAEVVGDEGQVIACDI 84

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>RRMJ_IDILO (Q5QXK8) Ribosomal RNA large subunit methyltransferase J (EC|
           2.1.1.-) (rRNA (uridine-2'-O-)-methyltransferase) (23S
           rRNA m2U2552 methyltransferase)
          Length = 208

 Score = 34.7 bits (78), Expect = 0.14
 Identities = 15/33 (45%), Positives = 22/33 (66%)
 Frame = +1

Query: 364 GWKVIDACAAPGNKTVHLAALMNGEGSIIACEL 462
           G  V+D  AAPG  + ++A   NG+G IIAC++
Sbjct: 51  GQTVVDLGAAPGGWSQYVADYFNGDGQIIACDI 83

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>RRMJ_VIBPA (Q87LZ4) Ribosomal RNA large subunit methyltransferase J (EC|
           2.1.1.-) (rRNA (uridine-2'-O-)-methyltransferase) (23S
           rRNA m2U2552 methyltransferase)
          Length = 209

 Score = 34.3 bits (77), Expect = 0.19
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = +1

Query: 358 QPGWKVIDACAAPGNKTVHLAALMNGEGSIIACEL 462
           +PG  V+D  AAPG  + + A ++   G IIAC+L
Sbjct: 50  KPGMTVVDLGAAPGGWSQYAAKIVGDSGQIIACDL 84

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>RRMJ_ERWCT (Q6D9B9) Ribosomal RNA large subunit methyltransferase J (EC|
           2.1.1.-) (rRNA (uridine-2'-O-)-methyltransferase) (23S
           rRNA m2U2552 methyltransferase)
          Length = 209

 Score = 34.3 bits (77), Expect = 0.19
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = +1

Query: 358 QPGWKVIDACAAPGNKTVHLAALMNGEGSIIACEL 462
           +PG  V+D  AAPG  + ++   + G+G IIAC++
Sbjct: 50  KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDI 84

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>RRMJ_PASMU (Q9CNJ3) Ribosomal RNA large subunit methyltransferase J (EC|
           2.1.1.-) (rRNA (uridine-2'-O-)-methyltransferase) (23S
           rRNA m2U2552 methyltransferase)
          Length = 209

 Score = 33.9 bits (76), Expect = 0.24
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = +1

Query: 358 QPGWKVIDACAAPGNKTVHLAALMNGEGSIIACEL 462
           +PG  V+D  AAPG  + ++ + + G G IIAC++
Sbjct: 50  KPGMTVVDLGAAPGGWSQYVVSQIGGAGRIIACDI 84

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>RRMJ_COLP3 (Q47YJ3) Ribosomal RNA large subunit methyltransferase J (EC|
           2.1.1.-) (rRNA (uridine-2'-O-)-methyltransferase) (23S
           rRNA m2U2552 methyltransferase)
          Length = 209

 Score = 33.5 bits (75), Expect = 0.32
 Identities = 12/35 (34%), Positives = 23/35 (65%)
 Frame = +1

Query: 358 QPGWKVIDACAAPGNKTVHLAALMNGEGSIIACEL 462
           +PG KV+D  AAPG  + +   ++  +G ++AC++
Sbjct: 50  KPGMKVVDLGAAPGGWSEYAVKVVGDKGQVVACDI 84

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>YLH4_SCHPO (Q9HGQ2) Hypothetical protein C17D4.04 in chromosome I|
          Length = 654

 Score = 32.3 bits (72), Expect = 0.71
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 12/76 (15%)
 Frame = +1

Query: 301 GKVLLQGKASCMVAAALSPQPGWKVIDACAAPGNKTVHLAALMN------------GEGS 444
           G +  Q   S +    L+ +   KV+D CAAPG+KT  L   ++              G 
Sbjct: 123 GDINRQESVSMVPPLLLNVESHHKVLDMCAAPGSKTAQLLEALHKPTKKEDITTLLPSGI 182

Query: 445 IIACELNKERAKTLQH 492
           +IA + + +RA  L H
Sbjct: 183 VIANDSDNKRAHMLVH 198

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>RRMJ_TREDE (Q73L97) Ribosomal RNA large subunit methyltransferase J (EC|
           2.1.1.-) (rRNA (uridine-2'-O-)-methyltransferase) (23S
           rRNA m2U2552 methyltransferase)
          Length = 199

 Score = 32.3 bits (72), Expect = 0.71
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = +1

Query: 361 PGWKVIDACAAPGNKTVHLAALMNGEGSIIACEL 462
           P  KV+D  AAPG+ TV++   +N EG + A +L
Sbjct: 41  PNDKVLDLGAAPGSWTVYVLRFLNKEGRVTAVDL 74

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>PIMT_AERPE (Q9YDA1) Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77)|
           (Protein-beta-aspartate methyltransferase) (PIMT)
           (Protein L-isoaspartyl methyltransferase) (L-isoaspartyl
           protein carboxyl methyltransferase)
          Length = 256

 Score = 32.3 bits (72), Expect = 0.71
 Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
 Frame = +1

Query: 241 PDMLVLPP---GTDMHKHPL-VTDGKVLLQGKASCMVAAALSPQPGWKVIDACAAPGNKT 408
           P  L +PP   G      PL +  G+ +        +   L PQPG KV+D  A  G ++
Sbjct: 60  PRHLFVPPEYRGMAYEDRPLPIGHGQTISAPGVVGRMLQLLDPQPGEKVLDVGAGSGYQS 119

Query: 409 VHLAALMNGEGSIIACELNKERAK 480
             LA L+   G + A E   E A+
Sbjct: 120 ALLAELVTPGGRVYAVERIPELAE 143

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>RRMJ_VIBF1 (Q5E7M3) Ribosomal RNA large subunit methyltransferase J (EC|
           2.1.1.-) (rRNA (uridine-2'-O-)-methyltransferase) (23S
           rRNA m2U2552 methyltransferase)
          Length = 209

 Score = 32.0 bits (71), Expect = 0.92
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +1

Query: 358 QPGWKVIDACAAPGNKTVHLAALMNGEGSIIACEL 462
           +PG  V+D  AAPG  + +    +  EG +IAC++
Sbjct: 50  KPGMTVVDLGAAPGGWSQYAVEQVGDEGQVIACDI 84

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>UBP49_MOUSE (Q6P9L4) Ubiquitin carboxyl-terminal hydrolase 49 (EC 3.1.2.15)|
           (Ubiquitin thioesterase 49)
           (Ubiquitin-specific-processing protease 49)
           (Deubiquitinating enzyme 49)
          Length = 685

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 20/56 (35%), Positives = 28/56 (50%)
 Frame = +1

Query: 187 SVIEVLSKMHKXDKDNIXPDMLVLPPGTDMHKHPLVTDGKVLLQGKASCMVAAALS 354
           S+++VLS + K  +       L L P T  H  P  T+GK  L G+ +   AA LS
Sbjct: 263 SILQVLSHLQKFREC-----FLNLDPSTSEHLFPQATNGKAQLSGRPASSSAAELS 313

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>RRMJ_PHOLL (Q7MYY0) Ribosomal RNA large subunit methyltransferase J (EC|
           2.1.1.-) (rRNA (uridine-2'-O-)-methyltransferase) (23S
           rRNA m2U2552 methyltransferase)
          Length = 209

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +1

Query: 358 QPGWKVIDACAAPGNKTVHLAALMNGEGSIIACEL 462
           +PG  V+D  AAPG  + +  + ++  G +IAC+L
Sbjct: 50  KPGMTVVDLGAAPGGWSQYAVSQISDNGRVIACDL 84

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>RRMJ_MANSM (Q65TZ0) Ribosomal RNA large subunit methyltransferase J (EC|
           2.1.1.-) (rRNA (uridine-2'-O-)-methyltransferase) (23S
           rRNA m2U2552 methyltransferase)
          Length = 208

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +1

Query: 358 QPGWKVIDACAAPGNKTVHLAALMNGEGSIIACEL 462
           +PG  V+D  AAPG  + ++   +  +G IIAC++
Sbjct: 49  KPGMTVVDLGAAPGGWSQYVVTQIGDKGRIIACDI 83

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>RRMJ_HAEDU (Q7VLF2) Ribosomal RNA large subunit methyltransferase J (EC|
           2.1.1.-) (rRNA (uridine-2'-O-)-methyltransferase) (23S
           rRNA m2U2552 methyltransferase)
          Length = 208

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +1

Query: 358 QPGWKVIDACAAPGNKTVHLAALMNGEGSIIACEL 462
           +PG  V+D  AAPG  + +    +  +G IIAC++
Sbjct: 49  RPGMTVVDLGAAPGGWSQYAVTQIGNQGRIIACDI 83

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>RRMJ_HAEIN (P45162) Ribosomal RNA large subunit methyltransferase J (EC|
           2.1.1.-) (rRNA (uridine-2'-O-)-methyltransferase) (23S
           rRNA m2U2552 methyltransferase) (Cell division protein
           ftsJ homolog)
          Length = 209

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +1

Query: 364 GWKVIDACAAPGNKTVHLAALMNGEGSIIACEL 462
           G  V+D  AAPG  + ++ + + G+G +IAC++
Sbjct: 52  GMTVVDLGAAPGGWSQYVVSQIGGKGRVIACDI 84

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>RRMJ_HAEI8 (Q4QKJ2) Ribosomal RNA large subunit methyltransferase J (EC|
           2.1.1.-) (rRNA (uridine-2'-O-)-methyltransferase) (23S
           rRNA m2U2552 methyltransferase)
          Length = 209

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +1

Query: 364 GWKVIDACAAPGNKTVHLAALMNGEGSIIACEL 462
           G  V+D  AAPG  + ++ + + G+G +IAC++
Sbjct: 52  GMTVVDLGAAPGGWSQYVVSQIGGKGRVIACDI 84

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>RRMJ_LEGPH (Q5ZRT1) Ribosomal RNA large subunit methyltransferase J (EC|
           2.1.1.-) (rRNA (uridine-2'-O-)-methyltransferase) (23S
           rRNA m2U2552 methyltransferase)
          Length = 206

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +1

Query: 358 QPGWKVIDACAAPGNKTVHLAALMNGEGSIIACEL 462
           +PG  V+D  AAPG  T + +  M G G ++A ++
Sbjct: 47  KPGMTVVDLGAAPGGWTQYASEKMRGSGRLVALDI 81

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>RRMJ_LEGPA (Q5X1A0) Ribosomal RNA large subunit methyltransferase J (EC|
           2.1.1.-) (rRNA (uridine-2'-O-)-methyltransferase) (23S
           rRNA m2U2552 methyltransferase)
          Length = 206

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +1

Query: 358 QPGWKVIDACAAPGNKTVHLAALMNGEGSIIACEL 462
           +PG  V+D  AAPG  T + +  M G G ++A ++
Sbjct: 47  KPGMTVVDLGAAPGGWTQYASEKMRGSGRLVALDI 81

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>DHE4_GIBFU (Q96VJ7) NADP-specific glutamate dehydrogenase (EC 1.4.1.4)|
           (NADP-GDH) (NADP-dependent glutamate dehydrogenase)
          Length = 451

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +3

Query: 294 HRWKGVIAGKSKLYGGSCIEPSA 362
           +RW+GV+ GK   +GGS I P A
Sbjct: 174 NRWEGVLTGKGLSWGGSLIRPEA 196

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>DHE4_BOTCI (O93934) NADP-specific glutamate dehydrogenase (EC 1.4.1.4)|
           (NADP-GDH) (NADP-dependent glutamate dehydrogenase)
          Length = 450

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +3

Query: 285 SIGHRWKGVIAGKSKLYGGSCIEPSA 362
           +I ++W+GV+ GK   +GGS I P A
Sbjct: 171 AIQNKWEGVLTGKGGSWGGSLIRPEA 196

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>RRMJ_VIBVY (Q7MI01) Ribosomal RNA large subunit methyltransferase J (EC|
           2.1.1.-) (rRNA (uridine-2'-O-)-methyltransferase) (23S
           rRNA m2U2552 methyltransferase)
          Length = 209

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 358 QPGWKVIDACAAPGNKTVHLAALMNGEGSIIACEL 462
           +PG  V+D  AAPG  + +   ++   G +IAC++
Sbjct: 50  KPGMTVVDLGAAPGGWSQYAIGVVGDSGRVIACDI 84

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>RRMJ_VIBVU (Q8DBW7) Ribosomal RNA large subunit methyltransferase J (EC|
           2.1.1.-) (rRNA (uridine-2'-O-)-methyltransferase) (23S
           rRNA m2U2552 methyltransferase)
          Length = 209

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 358 QPGWKVIDACAAPGNKTVHLAALMNGEGSIIACEL 462
           +PG  V+D  AAPG  + +   ++   G +IAC++
Sbjct: 50  KPGMTVVDLGAAPGGWSQYAIGVVGDSGRVIACDI 84

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>RRMJ_SHEON (Q8EHM3) Ribosomal RNA large subunit methyltransferase J (EC|
           2.1.1.-) (rRNA (uridine-2'-O-)-methyltransferase) (23S
           rRNA m2U2552 methyltransferase)
          Length = 209

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +1

Query: 358 QPGWKVIDACAAPGNKTVHLAALMNGEGSIIACEL 462
           +PG  V+D  AAPG  +     L+  +G +IAC++
Sbjct: 50  RPGMTVVDLGAAPGGWSQVAVKLVGDKGKVIACDI 84

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>DHE4_PENCH (Q9URS1) NADP-specific glutamate dehydrogenase (EC 1.4.1.4)|
           (NADP-GDH) (NADP-dependent glutamate dehydrogenase)
          Length = 461

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 288 IGHRWKGVIAGKSKLYGGSCIEPSA 362
           I ++W+GV+ GK   +GGS I P A
Sbjct: 173 IRNQWEGVLTGKGGSWGGSLIRPEA 197

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>RRMJ_PSEF5 (Q4KIG3) Ribosomal RNA large subunit methyltransferase J (EC|
           2.1.1.-) (rRNA (uridine-2'-O-)-methyltransferase) (23S
           rRNA m2U2552 methyltransferase)
          Length = 209

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +1

Query: 358 QPGWKVIDACAAPGNKTVHLAALMNGEGSIIACEL 462
           +PG  VID  AAPG  +   + L+ G+G +IA ++
Sbjct: 47  RPGMSVIDLGAAPGGWSQVTSRLIGGQGRLIASDI 81

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>RRMJ_PSEPK (Q88DV0) Ribosomal RNA large subunit methyltransferase J (EC|
           2.1.1.-) (rRNA (uridine-2'-O-)-methyltransferase) (23S
           rRNA m2U2552 methyltransferase)
          Length = 207

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +1

Query: 358 QPGWKVIDACAAPGNKTVHLAALMNGEGSIIACEL 462
           +PG  VID  AAPG  +   + L+ G+G +IA ++
Sbjct: 48  RPGMSVIDLGAAPGGWSQVTSRLIGGQGRLIASDI 82

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>DHE4_EMENI (P18819) NADP-specific glutamate dehydrogenase (EC 1.4.1.4)|
           (NADP-GDH) (NADP-dependent glutamate dehydrogenase)
          Length = 459

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 288 IGHRWKGVIAGKSKLYGGSCIEPSA 362
           I ++W+GV+ GK   +GGS I P A
Sbjct: 172 IRNQWEGVLTGKGGSWGGSLIRPEA 196

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>UROM_BOVIN (P48733) Uromodulin precursor (Tamm-Horsfall urinary glycoprotein)|
           (THP)
          Length = 643

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +1

Query: 331 CMVAAALSPQPGWKVIDACAAPGNKTVH-LAALMNGEGS 444
           C     LS + G + +D CA PG    H LA  +NGEG+
Sbjct: 96  CPEGFLLSSELGCEDVDECAEPGLSRCHALATCINGEGN 134

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>RRMJ_DESVH (Q729T9) Ribosomal RNA large subunit methyltransferase J (EC|
           2.1.1.-) (rRNA (uridine-2'-O-)-methyltransferase) (23S
           rRNA m2U2552 methyltransferase)
          Length = 204

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +1

Query: 364 GWKVIDACAAPGNKTVHLAALMNGEGSIIACELNK 468
           G KV+D  AAPG+ ++  A  +   G ++AC+L +
Sbjct: 38  GMKVLDLGAAPGSWSLGAAEKVGPRGRVLACDLQE 72

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>RRMJ_PSEU2 (Q4ZNQ4) Ribosomal RNA large subunit methyltransferase J (EC|
           2.1.1.-) (rRNA (uridine-2'-O-)-methyltransferase) (23S
           rRNA m2U2552 methyltransferase)
          Length = 216

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +1

Query: 358 QPGWKVIDACAAPGNKTVHLAALMNGEGSIIACEL 462
           +PG  VID  AAPG  +   + L+ G+G +IA ++
Sbjct: 47  RPGMTVIDLGAAPGGWSQVTSRLIGGQGRLIASDI 81

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>RRMJ_PSESM (Q87WP7) Ribosomal RNA large subunit methyltransferase J (EC|
           2.1.1.-) (rRNA (uridine-2'-O-)-methyltransferase) (23S
           rRNA m2U2552 methyltransferase)
          Length = 216

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +1

Query: 358 QPGWKVIDACAAPGNKTVHLAALMNGEGSIIACEL 462
           +PG  VID  AAPG  +   + L+ G+G +IA ++
Sbjct: 47  RPGMTVIDLGAAPGGWSQVTSRLIGGQGRLIASDI 81

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>RRMJ_PSE14 (Q48E69) Ribosomal RNA large subunit methyltransferase J (EC|
           2.1.1.-) (rRNA (uridine-2'-O-)-methyltransferase) (23S
           rRNA m2U2552 methyltransferase)
          Length = 216

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +1

Query: 358 QPGWKVIDACAAPGNKTVHLAALMNGEGSIIACEL 462
           +PG  VID  AAPG  +   + L+ G+G +IA ++
Sbjct: 47  RPGMTVIDLGAAPGGWSQVTSRLIGGQGRLIASDI 81

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>RRMJ_LEGPL (Q5WT13) Ribosomal RNA large subunit methyltransferase J (EC|
           2.1.1.-) (rRNA (uridine-2'-O-)-methyltransferase) (23S
           rRNA m2U2552 methyltransferase)
          Length = 206

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 358 QPGWKVIDACAAPGNKTVHLAALMNGEGSIIACEL 462
           +PG  V+D  A+PG  T + +  M G G ++A ++
Sbjct: 47  KPGMTVVDLGASPGGWTQYASEKMKGSGRLVALDI 81

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>YL042_MIMIV (Q5UPB9) Putative ankyrin repeat protein L42|
          Length = 357

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
 Frame = +1

Query: 64  ALQKICVKRKVSNVEDLLSEKTTVKP------KPRFVRVNTLKTTTGSVIEVLSKMHKXD 225
           A +K C+   +  V+ L SE    K         R++  +T++     +I+ L + +  D
Sbjct: 269 AFEKACINGHIDIVQYLFSENIITKDIITENSNTRYLFYHTIRNKHKHIIKFLIENNIFD 328

Query: 226 KDNIXPDMLVLPP 264
           KD   PD+L   P
Sbjct: 329 KDKKYPDILESAP 341

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>RL15_METVA (P14032) 50S ribosomal protein L15P|
          Length = 143

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 1   EIVXSGSVEEYIMLHKDTFKIALQKICVKRKVSNVEDLLSE 123
           E +  G +EEY++ +KD FK+   K+ V       E +L +
Sbjct: 71  ETINVGELEEYVLKYKDAFKLKDGKVVVNATEIGFEKILGK 111

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>ZDH21_PONPY (Q5RB84) Probable palmitoyltransferase ZDHHC21 (EC 2.3.1.-) (Zinc|
           finger DHHC domain-containing protein 21) (DHHC-21)
          Length = 265

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
 Frame = -3

Query: 429 HKCSKVDCFVPWSRTCINNLPTWLRAQCSCHHT---TCFSLQ*HLSICDQWMFMHISSR 262
           H   ++D   PW   C+     WL  Q  C +T   TC++L    S C  + F+ +  R
Sbjct: 111 HCVRRMDHHCPWINNCVGEDNHWLFLQL-CFYTELLTCYALM--FSFCHYYYFLPLKKR 166

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>ZDH21_MOUSE (Q9D270) Probable palmitoyltransferase ZDHHC21 (EC 2.3.1.-) (Zinc|
           finger DHHC domain-containing protein 21) (DHHC-21)
           (GABA-A receptor-associated membrane protein 3)
          Length = 265

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
 Frame = -3

Query: 429 HKCSKVDCFVPWSRTCINNLPTWLRAQCSCHHT---TCFSLQ*HLSICDQWMFMHISSR 262
           H   ++D   PW   C+     WL  Q  C +T   TC++L    S C  + F+ +  R
Sbjct: 111 HCVRRMDHHCPWINNCVGEDNHWLFLQL-CFYTELLTCYALM--FSFCHYYYFLPLKKR 166

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>ZDH21_HUMAN (Q8IVQ6) Probable palmitoyltransferase ZDHHC21 (EC 2.3.1.-) (Zinc|
           finger DHHC domain-containing protein 21) (DHHC-21)
          Length = 265

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
 Frame = -3

Query: 429 HKCSKVDCFVPWSRTCINNLPTWLRAQCSCHHT---TCFSLQ*HLSICDQWMFMHISSR 262
           H   ++D   PW   C+     WL  Q  C +T   TC++L    S C  + F+ +  R
Sbjct: 111 HCVRRMDHHCPWINNCVGEDNHWLFLQL-CFYTELLTCYALM--FSFCHYYYFLPLKKR 166

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>UBIE_SHEON (Q8E9R7) Ubiquinone/menaquinone biosynthesis methyltransferase ubiE|
           (EC 2.1.1.-)
          Length = 251

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +1

Query: 358 QPGWKVIDACAAPGNKTVHLAALMNGEGSIIACELNKERAK 480
           +PG KV+D     G+ T   + L+  +G ++  ++N    K
Sbjct: 62  RPGMKVLDLAGGTGDLTAKFSHLVGDKGEVVLADINDSMLK 102

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>RUMA_SHEON (Q8EBQ3) 23S rRNA (uracil-5-)-methyltransferase rumA (EC 2.1.1.-)|
           (23S rRNA(M-5-U1939)-methyltransferase)
          Length = 449

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
 Frame = +1

Query: 223 DKDNIXPDMLVLPPGTDMHKHPLVTDGKVLLQGKASCMVAAAL---SPQPGWKVIDACAA 393
           DK ++ P  L   PG  +  +  +             MVA AL   +PQPG +++D    
Sbjct: 264 DKTDVQPVSLTFTPGNFVQVNAQIN----------KAMVAQALDWLAPQPGERILDLFCG 313

Query: 394 PGNKTVHLAAL 426
            GN ++ LA +
Sbjct: 314 MGNFSLPLARM 324

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>DHE4_YEAST (P07262) NADP-specific glutamate dehydrogenase 1 (EC 1.4.1.4)|
           (NADP-GDH 1) (NADP-dependent glutamate dehydrogenase 1)
          Length = 454

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 285 SIGHRWKGVIAGKSKLYGGSCIEPSA 362
           S  + W+GV+ GK   +GGS I P A
Sbjct: 167 SYKNSWEGVLTGKGLNWGGSLIRPEA 192

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>SYNC_HUMAN (O43776) Asparaginyl-tRNA synthetase, cytoplasmic (EC 6.1.1.22)|
           (Asparagine--tRNA ligase) (AsnRS)
          Length = 548

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 10/105 (9%)
 Frame = +1

Query: 88  RKVSNVEDLLSEKTTVK-----PKPRFVRVNTLKTTTGSVIEVLSKMHKXDKDNIXPDML 252
           R+  N+E+  ++K T+K     P+P+ V++  L+   G  ++V   +H+  +       L
Sbjct: 90  RREKNLEE--AKKITIKNDPSLPEPKCVKIGALEGYRGQRVKVFGWVHRLRRQGKNLMFL 147

Query: 253 VLPPGTDMHKHPLVTD-----GKVLLQGKASCMVAAALSPQPGWK 372
           VL  GT   +  L  +       VLL  ++S  V   L+  P  K
Sbjct: 148 VLRDGTGYLQCVLADELCQCYNGVLLSTESSVAVYGMLNLTPKGK 192

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>RL15_METMP (Q6LXD1) 50S ribosomal protein L15P|
          Length = 143

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 1   EIVXSGSVEEYIMLHKDTFKIALQKICVKRKVSNVEDLLSE 123
           E +  G +EEYI+ +KD F++   K+ V       E +L +
Sbjct: 71  ETINIGELEEYILKYKDAFQVEEGKVVVNATEIGFEKVLGK 111

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>DHE5_YEAST (P39708) NADP-specific glutamate dehydrogenase 2 (EC 1.4.1.4)|
           (NADP-GDH 2) (NADP-dependent glutamate dehydrogenase 2)
          Length = 457

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 285 SIGHRWKGVIAGKSKLYGGSCIEPSA 362
           S  + W+GV+ GK   +GGS I P A
Sbjct: 168 SYKNSWEGVLTGKGLNWGGSLIRPEA 193


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.316    0.132    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,265,746
Number of Sequences: 219361
Number of extensions: 1413657
Number of successful extensions: 3683
Number of sequences better than 10.0: 84
Number of HSP's better than 10.0 without gapping: 3579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3680
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3465624120
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result