ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags39k23
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AB233453.1| Oryza sativa (japonica cultivar-group) OsPPCK2L ... 226 6e-56
2dbj|AB233452.1| Oryza sativa (japonica cultivar-group) OsPPCK2S ... 226 6e-56
3gb|AF399915.1|AF399915 Sorghum bicolor phosphoenolpyruvate carbo... 167 5e-38
4gb|AY911414.1| Zea mays phosphoenolpyruvate carboxylase kinase 2... 159 1e-35
5ref|XM_473187.1| Oryza sativa (japonica cultivar-group), predic... 157 5e-35
6dbj|AB234234.1| Oryza sativa (japonica cultivar-group) OsPPCK3 m... 157 5e-35
7dbj|AK066885.1| Oryza sativa (japonica cultivar-group) cDNA clon... 157 5e-35
8gb|AY911415.1| Zea mays phosphoenolpyruvate carboxylase kinase 3... 151 3e-33
9gb|BT018830.1| Zea mays clone EL01N0551C10.d mRNA sequence 137 5e-29
10ref|XM_466833.1| Oryza sativa (japonica cultivar-group), mRNA 129 1e-26
11dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 129 1e-26
12dbj|AP006523.2| Oryza sativa (japonica cultivar-group) genomic D... 129 1e-26
13emb|AL731616.5|OSJN00262 Oryza sativa genomic DNA, chromosome 4,... 123 7e-25
14dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 123 7e-25
15gb|AY911416.1| Zea mays phosphoenolpyruvate carboxylase kinase 4... 113 7e-22
16gb|BT018640.1| Zea mays clone EL01N0504G05.d mRNA sequence 86 1e-13
17gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome 44 0.51
18gb|AC129716.3| Oryza sativa (japonica cultivar-group) chromosome... 44 0.51
19ref|XM_813237.1| Trypanosoma cruzi strain CL Brener hypothetical... 44 0.51
20gb|AE014075.1| Escherichia coli CFT073, complete genome 44 0.51
21gb|CP000243.1| Escherichia coli UTI89, complete genome 44 0.51
22gb|U00096.2| Escherichia coli K-12 MG1655, complete genome 44 0.51
23dbj|AP009048.1| Escherichia coli W3110 DNA, complete genome 44 0.51
24gb|AC010042.8| Drosophila melanogaster 3L BAC RP98-5K6 (Roswell ... 44 0.51
25ref|NM_206299.1| Drosophila melanogaster Clock CG7391-RC, transc... 44 0.51
26ref|NM_170628.1| Drosophila melanogaster Clock CG7391-RB, transc... 44 0.51
27ref|NM_079240.2| Drosophila melanogaster Clock CG7391-RA, transc... 44 0.51
28ref|NM_001014576.1| Drosophila melanogaster Clock CG7391-RD, tra... 44 0.51
29ref|NM_001014575.1| Drosophila melanogaster Clock CG7391-RE, tra... 44 0.51
30ref|NM_001014574.1| Drosophila melanogaster Clock CG7391-RF, tra... 44 0.51
31gb|AC091225.2| Drosophila melanogaster 3L BAC RP98-34B24 (Roswel... 44 0.51
32ref|XM_687846.1| PREDICTED: Danio rerio similar to Nuclear recep... 44 0.51
33emb|BX296530.7| Zebrafish DNA sequence from clone DKEY-22H2 in l... 44 0.51
34gb|AC079022.2|AC079022 Oryza sativa chromosome 5 clone P0574H01,... 44 0.51
35dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.51
36gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome 44 0.51
37gb|AE003557.4| Drosophila melanogaster chromosome 3L, section 28... 44 0.51
38gb|AF067207.1|AF067207 Drosophila melanogaster CLOCK mRNA, compl... 44 0.51
39dbj|D16557.1|ECOICC Escherichia coli gene for Icc protein, compl... 44 0.51
40gb|AF069997.1|AF069997 Drosophila melanogaster CLOCK mRNA, compl... 44 0.51
41gb|AF065133.1|AF065133 Drosophila melanogaster CLOCK (Clk) mRNA,... 44 0.51
42gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome 44 0.51
43dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome 44 0.51
44gb|CP000034.1| Shigella dysenteriae Sd197, complete genome 44 0.51
45gb|U28377.1|ECU28377 Escherichia coli K-12 genome; approximately... 44 0.51
46gb|CP000036.1| Shigella boydii Sb227, complete genome 44 0.51
47gb|CP000038.1| Shigella sonnei Ss046, complete genome 44 0.51
48gb|AC102156.16| Mus musculus chromosome 18, clone RP23-334L7, co... 42 2.0
49ref|XM_514700.1| PREDICTED: Pan troglodytes LOC458308 (LOC458308... 42 2.0
50gb|AY225363.1| Pan troglodytes nuclear receptor coactivator 3 (N... 42 2.0
51gb|AF241732.1| Homo sapiens chromosome X clone XXcos-P117 map p1... 42 2.0
52gb|AF241731.2| Homo sapiens chromosome X clone LL0XNC01-45P13 ma... 42 2.0
53gb|AC157903.3| Mus musculus chromosome 18, clone RP23-341E18, co... 42 2.0
54gb|AY462627.1| Plasmodium falciparum erythrocyte membrane protei... 42 2.0
55gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, comp... 42 2.0
56ref|NM_181659.1| Homo sapiens nuclear receptor coactivator 3 (NC... 42 2.0
57ref|NM_006534.2| Homo sapiens nuclear receptor coactivator 3 (NC... 42 2.0
58emb|AL034418.5|HS1049G16 Human DNA sequence from clone RP5-1049G... 42 2.0
59gb|BC092516.1| Homo sapiens nuclear receptor coactivator 3, tran... 42 2.0
60gb|BC097784.1| Xenopus laevis cDNA clone MGC:115491 IMAGE:686863... 42 2.0
61gb|AC173996.2| Pan troglodytes chromosome X clone PTB-074P14 map... 42 2.0
62gb|BC044297.1| Xenopus laevis, Similar to RIKEN cDNA 4732481H14 ... 42 2.0
63gb|AC102162.6| Mus musculus chromosome 18, clone RP23-419P4, com... 42 2.0
64ref|XM_564199.1| Anopheles gambiae str. PEST ENSANGP00000028013 ... 42 2.0
65emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 42 2.0
66gb|AF016031.1|AF016031 Homo sapiens thyroid hormone receptor act... 42 2.0
67gb|AF012108.1|AF012108 Homo sapiens Amplified in Breast Cancer (... 42 2.0
68gb|AF010227.1|AF010227 Homo sapiens receptor-associated coactiva... 42 2.0
69gb|AF023138.1|DVBIGB5 Drosophila virilis big brain (bib) gene, e... 42 2.0
70dbj|AB209863.1| Homo sapiens mRNA for nuclear receptor coactivat... 42 2.0
71gb|BC086712.1| Danio rerio zgc:101641, mRNA (cDNA clone MGC:1016... 40 8.0
72ref|NM_124872.2| Arabidopsis thaliana ATRBP45A; RNA binding AT5G... 40 8.0
73gb|CP000097.1| Synechococcus sp. CC9902, complete genome 40 8.0
74gb|U80737.1|HSU80737 Homo sapiens CAGH16 mRNA, complete cds 40 8.0
75gb|AY225364.1| Gorilla gorilla nuclear receptor coactivator 3 (N... 40 8.0
76gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 40 8.0
77gb|AC135500.4| Oryza sativa (japonica cultivar-group) chromosome... 40 8.0
78gb|AC110036.8| Mus musculus chromosome 7, clone RP23-254F9, comp... 40 8.0
79gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 8.0
80gb|AC139939.6| Mus musculus chromosome 1, clone RP23-458O23, com... 40 8.0
81gb|AC136972.3| Oryza sativa chromosome 3 BAC OSJNBb0007E22 genom... 40 8.0
82emb|AL590226.23| Human DNA sequence from clone RP11-251M1 on chr... 40 8.0
83emb|BX294018.1|NCB8P8 Neurospora crassa DNA linkage group V BAC ... 40 8.0
84emb|AJ851458.1| Gallus gallus mRNA for hypothetical protein, clo... 40 8.0
85gb|AC161929.4| Mus musculus chromosome 7, clone RP23-120D7, comp... 40 8.0
86gb|AC087373.4| Homo sapiens chromosome 11, clone RP11-54J7, comp... 40 8.0
87ref|XM_694520.1| PREDICTED: Danio rerio similar to BMP2 inducibl... 40 8.0
88ref|XM_704579.1| PREDICTED: Danio rerio similar to BMP2 inducibl... 40 8.0
89ref|XM_689585.1| PREDICTED: Danio rerio similar to BMP2 inducibl... 40 8.0
90ref|NM_001012825.1| Gallus gallus RAS p21 protein activator 3 (R... 40 8.0
91gb|AC087797.5| Oryza sativa chromosome 3 BAC OSJNBb0022E02 genom... 40 8.0
92gb|AC158522.2| Mus musculus BAC clone RP23-400N21 from chromosom... 40 8.0
93emb|BX640536.6| Zebrafish DNA sequence from clone CH211-191A6 in... 40 8.0
94gb|AF324983.2|AF324983 Arabidopsis thaliana AT5g54900 (AT5g54900... 40 8.0
95dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.0
96dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.0
97dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.0
98dbj|AP003431.2| Oryza sativa (japonica cultivar-group) genomic D... 40 8.0
99ref|NM_001008644.1| Danio rerio zgc:101641 (zgc:101641), mRNA 40 8.0
100dbj|AP003808.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.0
101dbj|AP003806.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.0
102dbj|AB005232.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 8.0
103emb|AL929264.4| Zebrafish DNA sequence from clone CH211-59C24 in... 40 8.0
104emb|X87329.1|PSPAF1 P.anserina car1 gene 40 8.0
105emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome 40 8.0
106emb|BX004805.6| Zebrafish DNA sequence from clone DKEY-196N8 in ... 40 8.0
107gb|AF036892.1|AF036892 Homo sapiens nuclear receptor coactivator... 40 8.0 
>dbj|AB233453.1| Oryza sativa (japonica cultivar-group) OsPPCK2L mRNA for
           phosphoenolpyruvate carboxylase kinase, complete cds
          Length = 1458

 Score =  226 bits (114), Expect = 6e-56
 Identities = 159/174 (91%)
 Strand = Plus / Plus

                                                                       
Query: 39  ggcagcgttcggttccctccgaggctgttctccggcgtgtctccggccgccaaggacctg 98
           ||||||||  ||||||| || ||||||||| |||||||||| ||||| ||||||||||| 
Sbjct: 791 ggcagcgtcaggttcccgcctaggctgttcgccggcgtgtccccggcggccaaggacctc 850

                                                                       
Query: 99  atgaggcggatgatgtgccgcgacgagtggagacgcttctccgccgagcaagtcctccgc 158
           |||||||| |||||||||||||||   ||||| |||||||||||||||||||||||| | 
Sbjct: 851 atgaggcgcatgatgtgccgcgacacctggaggcgcttctccgccgagcaagtcctcggt 910

                                                                 
Query: 159 cacccgtggatcgtgagcggcggaggagcccgagcgatggagcagccaacctga 212
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 911 cacccgtggatcgtgagcggcggaggagcccgagcgatggagcagccaacctga 964
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>dbj|AB233452.1| Oryza sativa (japonica cultivar-group) OsPPCK2S mRNA for
           phosphoenolpyruvate carboxylase kinase, complete cds
          Length = 1404

 Score =  226 bits (114), Expect = 6e-56
 Identities = 159/174 (91%)
 Strand = Plus / Plus

                                                                       
Query: 39  ggcagcgttcggttccctccgaggctgttctccggcgtgtctccggccgccaaggacctg 98
           ||||||||  ||||||| || ||||||||| |||||||||| ||||| ||||||||||| 
Sbjct: 737 ggcagcgtcaggttcccgcctaggctgttcgccggcgtgtccccggcggccaaggacctc 796

                                                                       
Query: 99  atgaggcggatgatgtgccgcgacgagtggagacgcttctccgccgagcaagtcctccgc 158
           |||||||| |||||||||||||||   ||||| |||||||||||||||||||||||| | 
Sbjct: 797 atgaggcgcatgatgtgccgcgacacctggaggcgcttctccgccgagcaagtcctcggt 856

                                                                 
Query: 159 cacccgtggatcgtgagcggcggaggagcccgagcgatggagcagccaacctga 212
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 cacccgtggatcgtgagcggcggaggagcccgagcgatggagcagccaacctga 910
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>gb|AF399915.1|AF399915 Sorghum bicolor phosphoenolpyruvate carboxylase kinase (PPCK) mRNA,
           complete cds
          Length = 1389

 Score =  167 bits (84), Expect = 5e-38
 Identities = 162/188 (86%)
 Strand = Plus / Plus

                                                                       
Query: 25  cggccgtgatgcggggcagcgttcggttccctccgaggctgttctccggcgtgtctccgg 84
           |||||||| ||||||||||||| |||||||| || |||||||||  ||| ||||| || |
Sbjct: 757 cggccgtgctgcggggcagcgtccggttcccgcccaggctgttcagcggggtgtcccccg 816

                                                                       
Query: 85  ccgccaaggacctgatgaggcggatgatgtgccgcgacgagtggagacgcttctccgccg 144
           | |||||||||||| ||||||| ||||| ||||||||||||||| |  | ||| ||||||
Sbjct: 817 cggccaaggacctgttgaggcgcatgatctgccgcgacgagtggcggaggttcaccgccg 876

                                                                       
Query: 145 agcaagtcctccgccacccgtggatcgtgagcggcggaggagcccgagcgatggagcagc 204
           |||||||||||   ||||||||||||||||||||||||||||| || || || |||| ||
Sbjct: 877 agcaagtcctcgctcacccgtggatcgtgagcggcggaggagcacgggcaatcgagcggc 936

                   
Query: 205 caacctga 212
           ||||||||
Sbjct: 937 caacctga 944
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>gb|AY911414.1| Zea mays phosphoenolpyruvate carboxylase kinase 2 (PPCK2) mRNA,
           complete cds
          Length = 1024

 Score =  159 bits (80), Expect = 1e-35
 Identities = 161/188 (85%)
 Strand = Plus / Plus

                                                                       
Query: 25  cggccgtgatgcggggcagcgttcggttccctccgaggctgttctccggcgtgtctccgg 84
           |||||||| |||| |||||||  || ||||| || ||||| |||  ||| ||||| || |
Sbjct: 710 cggccgtgctgcgcggcagcgcgcgcttcccgcccaggctcttcggcggggtgtcgcccg 769

                                                                       
Query: 85  ccgccaaggacctgatgaggcggatgatgtgccgcgacgagtggagacgcttctccgccg 144
           ||||||||||||||||| |||| ||||| |||||||||||||||||  | ||| ||||||
Sbjct: 770 ccgccaaggacctgatgcggcgcatgatctgccgcgacgagtggaggaggttcaccgccg 829

                                                                       
Query: 145 agcaagtcctccgccacccgtggatcgtgagcggcggaggagcccgagcgatggagcagc 204
           |||||||||||   ||||||||||||||||| |||||||||||||| || ||||||| ||
Sbjct: 830 agcaagtcctcgctcacccgtggatcgtgagtggcggaggagcccgggcaatggagcggc 889

                   
Query: 205 caacctga 212
           ||||||||
Sbjct: 890 caacctga 897
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>ref|XM_473187.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 861

 Score =  157 bits (79), Expect = 5e-35
 Identities = 124/139 (89%)
 Strand = Plus / Plus

                                                                       
Query: 49  ggttccctccgaggctgttctccggcgtgtctccggccgccaaggacctgatgaggcgga 108
           ||||||| ||||||||||||||||||||||| ||||| ||||||||||||||| ||||||
Sbjct: 701 ggttcccgccgaggctgttctccggcgtgtcgccggctgccaaggacctgatgcggcgga 760

                                                                       
Query: 109 tgatgtgccgcgacgagtggagacgcttctccgccgagcaagtcctccgccacccgtgga 168
           |||||||||||||||  |  ||  | ||||||||||||||||||||  | ||||||||||
Sbjct: 761 tgatgtgccgcgacgtctacaggaggttctccgccgagcaagtcctgaggcacccgtgga 820

                              
Query: 169 tcgtgagcggcggaggagc 187
           |||||||||| ||||||||
Sbjct: 821 tcgtgagcggaggaggagc 839
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>dbj|AB234234.1| Oryza sativa (japonica cultivar-group) OsPPCK3 mRNA for
           phosphoenolpyruvate carboxylase kinase, complete cds
          Length = 1224

 Score =  157 bits (79), Expect = 5e-35
 Identities = 124/139 (89%)
 Strand = Plus / Plus

                                                                       
Query: 49  ggttccctccgaggctgttctccggcgtgtctccggccgccaaggacctgatgaggcgga 108
           ||||||| ||||||||||||||||||||||| ||||| ||||||||||||||| ||||||
Sbjct: 744 ggttcccgccgaggctgttctccggcgtgtcgccggctgccaaggacctgatgcggcgga 803

                                                                       
Query: 109 tgatgtgccgcgacgagtggagacgcttctccgccgagcaagtcctccgccacccgtgga 168
           |||||||||||||||  |  ||  | ||||||||||||||||||||  | ||||||||||
Sbjct: 804 tgatgtgccgcgacgtctacaggaggttctccgccgagcaagtcctgaggcacccgtgga 863

                              
Query: 169 tcgtgagcggcggaggagc 187
           |||||||||| ||||||||
Sbjct: 864 tcgtgagcggaggaggagc 882
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>dbj|AK066885.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013088G18, full
           insert sequence
          Length = 1224

 Score =  157 bits (79), Expect = 5e-35
 Identities = 124/139 (89%)
 Strand = Plus / Plus

                                                                       
Query: 49  ggttccctccgaggctgttctccggcgtgtctccggccgccaaggacctgatgaggcgga 108
           ||||||| ||||||||||||||||||||||| ||||| ||||||||||||||| ||||||
Sbjct: 744 ggttcccgccgaggctgttctccggcgtgtcgccggctgccaaggacctgatgcggcgga 803

                                                                       
Query: 109 tgatgtgccgcgacgagtggagacgcttctccgccgagcaagtcctccgccacccgtgga 168
           |||||||||||||||  |  ||  | ||||||||||||||||||||  | ||||||||||
Sbjct: 804 tgatgtgccgcgacgtctacaggaggttctccgccgagcaagtcctgaggcacccgtgga 863

                              
Query: 169 tcgtgagcggcggaggagc 187
           |||||||||| ||||||||
Sbjct: 864 tcgtgagcggaggaggagc 882
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>gb|AY911415.1| Zea mays phosphoenolpyruvate carboxylase kinase 3 (PPCK3) mRNA,
           complete cds
          Length = 995

 Score =  151 bits (76), Expect = 3e-33
 Identities = 160/188 (85%)
 Strand = Plus / Plus

                                                                       
Query: 25  cggccgtgatgcggggcagcgttcggttccctccgaggctgttctccggcgtgtctccgg 84
           |||||||| ||||||||||||  || ||||| ||  ||||||||  ||| ||||| || |
Sbjct: 793 cggccgtgctgcggggcagcgcgcgcttcccgccccggctgttcggcggggtgtcccccg 852

                                                                       
Query: 85  ccgccaaggacctgatgaggcggatgatgtgccgcgacgagtggagacgcttctccgccg 144
           | |||||||||||||||||||| ||||| |||||||||||||||||  | ||| ||||||
Sbjct: 853 cggccaaggacctgatgaggcgcatgatctgccgcgacgagtggaggaggttcaccgccg 912

                                                                       
Query: 145 agcaagtcctccgccacccgtggatcgtgagcggcggaggagcccgagcgatggagcagc 204
           |||| ||||||   ||||||||||||||||||||||| |||||||| |  ||||||| ||
Sbjct: 913 agcaggtcctcgctcacccgtggatcgtgagcggcggcggagcccgtggtatggagcggc 972

                   
Query: 205 caacctga 212
           ||||||||
Sbjct: 973 caacctga 980
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>gb|BT018830.1| Zea mays clone EL01N0551C10.d mRNA sequence
          Length = 1363

 Score =  137 bits (69), Expect = 5e-29
 Identities = 160/189 (84%), Gaps = 1/189 (0%)
 Strand = Plus / Plus

                                                                       
Query: 25  cggccgtgatgcggggcagcgttcggttccctccga-ggctgttctccggcgtgtctccg 83
           |||||||| ||||||||||||  || ||||| ||   ||||||||  ||| ||||| || 
Sbjct: 772 cggccgtgctgcggggcagcgcgcgcttcccgcccccggctgttcggcggggtgtccccc 831

                                                                       
Query: 84  gccgccaaggacctgatgaggcggatgatgtgccgcgacgagtggagacgcttctccgcc 143
           || |||||||||||||||||||| ||||| |||||||||||||||||  | ||| |||||
Sbjct: 832 gcggccaaggacctgatgaggcgcatgatctgccgcgacgagtggaggaggttcaccgcc 891

                                                                       
Query: 144 gagcaagtcctccgccacccgtggatcgtgagcggcggaggagcccgagcgatggagcag 203
           ||||| ||||||   ||||||||||||||||||||||| |||||||| |  ||||||| |
Sbjct: 892 gagcaggtcctcgctcacccgtggatcgtgagcggcggcggagcccgtggcatggagcgg 951

                    
Query: 204 ccaacctga 212
           |||||||||
Sbjct: 952 ccaacctga 960
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>ref|XM_466833.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 936

 Score =  129 bits (65), Expect = 1e-26
 Identities = 104/117 (88%)
 Strand = Plus / Plus

                                                                       
Query: 39  ggcagcgttcggttccctccgaggctgttctccggcgtgtctccggccgccaaggacctg 98
           ||||||||  ||||||| || ||||||||| |||||||||| ||||| ||||||||||| 
Sbjct: 706 ggcagcgtcaggttcccgcctaggctgttcgccggcgtgtccccggcggccaaggacctc 765

                                                                    
Query: 99  atgaggcggatgatgtgccgcgacgagtggagacgcttctccgccgagcaagtcctc 155
           |||||||| |||||||||||||||   ||||| ||||||||||||||||||||||||
Sbjct: 766 atgaggcgcatgatgtgccgcgacacctggaggcgcttctccgccgagcaagtcctc 822



 Score =  107 bits (54), Expect = 4e-20
 Identities = 54/54 (100%)
 Strand = Plus / Plus

                                                                 
Query: 159 cacccgtggatcgtgagcggcggaggagcccgagcgatggagcagccaacctga 212
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 883 cacccgtggatcgtgagcggcggaggagcccgagcgatggagcagccaacctga 936
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  129 bits (65), Expect = 1e-26
 Identities = 104/117 (88%)
 Strand = Plus / Plus

                                                                            
Query: 39       ggcagcgttcggttccctccgaggctgttctccggcgtgtctccggccgccaaggacctg 98
                ||||||||  ||||||| || ||||||||| |||||||||| ||||| ||||||||||| 
Sbjct: 24954216 ggcagcgtcaggttcccgcctaggctgttcgccggcgtgtccccggcggccaaggacctc 24954275

                                                                         
Query: 99       atgaggcggatgatgtgccgcgacgagtggagacgcttctccgccgagcaagtcctc 155
                |||||||| |||||||||||||||   ||||| ||||||||||||||||||||||||
Sbjct: 24954276 atgaggcgcatgatgtgccgcgacacctggaggcgcttctccgccgagcaagtcctc 24954332



 Score =  107 bits (54), Expect = 4e-20
 Identities = 54/54 (100%)
 Strand = Plus / Plus

                                                                      
Query: 159      cacccgtggatcgtgagcggcggaggagcccgagcgatggagcagccaacctga 212
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24954453 cacccgtggatcgtgagcggcggaggagcccgagcgatggagcagccaacctga 24954506
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>dbj|AP006523.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:B1215B07
          Length = 165957

 Score =  129 bits (65), Expect = 1e-26
 Identities = 104/117 (88%)
 Strand = Plus / Plus

                                                                          
Query: 39     ggcagcgttcggttccctccgaggctgttctccggcgtgtctccggccgccaaggacctg 98
              ||||||||  ||||||| || ||||||||| |||||||||| ||||| ||||||||||| 
Sbjct: 115499 ggcagcgtcaggttcccgcctaggctgttcgccggcgtgtccccggcggccaaggacctc 115558

                                                                       
Query: 99     atgaggcggatgatgtgccgcgacgagtggagacgcttctccgccgagcaagtcctc 155
              |||||||| |||||||||||||||   ||||| ||||||||||||||||||||||||
Sbjct: 115559 atgaggcgcatgatgtgccgcgacacctggaggcgcttctccgccgagcaagtcctc 115615



 Score =  107 bits (54), Expect = 4e-20
 Identities = 54/54 (100%)
 Strand = Plus / Plus

                                                                    
Query: 159    cacccgtggatcgtgagcggcggaggagcccgagcgatggagcagccaacctga 212
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115736 cacccgtggatcgtgagcggcggaggagcccgagcgatggagcagccaacctga 115789
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>emb|AL731616.5|OSJN00262 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0073E02,
             complete sequence
          Length = 139080

 Score =  123 bits (62), Expect = 7e-25
 Identities = 95/106 (89%)
 Strand = Plus / Plus

                                                                         
Query: 49    ggttccctccgaggctgttctccggcgtgtctccggccgccaaggacctgatgaggcgga 108
             ||||||| ||||||||||||||||||||||| ||||| ||||||||||||||| ||||||
Sbjct: 59402 ggttcccgccgaggctgttctccggcgtgtcgccggctgccaaggacctgatgcggcgga 59461

                                                           
Query: 109   tgatgtgccgcgacgagtggagacgcttctccgccgagcaagtcct 154
             |||||||||||||||  |  ||  | ||||||||||||||||||||
Sbjct: 59462 tgatgtgccgcgacgtctacaggaggttctccgccgagcaagtcct 59507



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                          
Query: 159   cacccgtggatcgtgagcggcggaggagc 187
             |||||||||||||||||||| ||||||||
Sbjct: 59668 cacccgtggatcgtgagcggaggaggagc 59696
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  123 bits (62), Expect = 7e-25
 Identities = 95/106 (89%)
 Strand = Plus / Plus

                                                                            
Query: 49       ggttccctccgaggctgttctccggcgtgtctccggccgccaaggacctgatgaggcgga 108
                ||||||| ||||||||||||||||||||||| ||||| ||||||||||||||| ||||||
Sbjct: 25841992 ggttcccgccgaggctgttctccggcgtgtcgccggctgccaaggacctgatgcggcgga 25842051

                                                              
Query: 109      tgatgtgccgcgacgagtggagacgcttctccgccgagcaagtcct 154
                |||||||||||||||  |  ||  | ||||||||||||||||||||
Sbjct: 25842052 tgatgtgccgcgacgtctacaggaggttctccgccgagcaagtcct 25842097



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                             
Query: 159      cacccgtggatcgtgagcggcggaggagc 187
                |||||||||||||||||||| ||||||||
Sbjct: 25842258 cacccgtggatcgtgagcggaggaggagc 25842286
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>gb|AY911416.1| Zea mays phosphoenolpyruvate carboxylase kinase 4 (PPCK4) mRNA,
           complete cds
          Length = 1214

 Score =  113 bits (57), Expect = 7e-22
 Identities = 162/197 (82%)
 Strand = Plus / Plus

                                                                       
Query: 16  acgtgctctcggccgtgatgcggggcagcgttcggttccctccgaggctgttctccggcg 75
           ||||| || |||||||| |||| |||||| |  ||||||| ||   ||||||| |||| |
Sbjct: 687 acgtgttcgcggccgtgctgcgcggcagcctcaggttcccgcccgcgctgttcgccgggg 746

                                                                       
Query: 76  tgtctccggccgccaaggacctgatgaggcggatgatgtgccgcgacgagtggagacgct 135
           | || ||||| |||||||| |||||| |||||||||||||||||||||  |  ||| | |
Sbjct: 747 tctcgccggcggccaaggatctgatgcggcggatgatgtgccgcgacgtctccagaaggt 806

                                                                       
Query: 136 tctccgccgagcaagtcctccgccacccgtggatcgtgagcggcggaggagcccgagcga 195
           |||||||||||||||||||| | ||||||||||||  |||||| || |||| ||||| | 
Sbjct: 807 tctccgccgagcaagtcctcaggcacccgtggatccagagcggaggcggaggccgagagc 866

                            
Query: 196 tggagcagccaacctga 212
           ||| || ||||||||||
Sbjct: 867 tggtgcggccaacctga 883
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>gb|BT018640.1| Zea mays clone EL01N0504G05.d mRNA sequence
          Length = 1389

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 109/131 (83%)
 Strand = Plus / Plus

                                                                       
Query: 25  cggccgtgatgcggggcagcgttcggttccctccgaggctgttctccggcgtgtctccgg 84
           |||||||| |||| |||||||  || ||||| || ||||| |||  ||| ||||| || |
Sbjct: 723 cggccgtgctgcgcggcagcgcgcgcttcccgcccaggctcttcggcggggtgtcgcccg 782

                                                                       
Query: 85  ccgccaaggacctgatgaggcggatgatgtgccgcgacgagtggagacgcttctccgccg 144
           ||||| ||||||||||| |||| ||||| |||||||||||||||||  | ||| ||| ||
Sbjct: 783 ccgcccaggacctgatgcggcgcatgatctgccgcgacgagtggaggaggttcaccgtcg 842

                      
Query: 145 agcaagtcctc 155
           |||||||||||
Sbjct: 843 agcaagtcctc 853



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 50/54 (92%)
 Strand = Plus / Plus

                                                                  
Query: 159  cacccgtggatcgtgagcggcggaggagcccgagcgatggagcagccaacctga 212
            ||||||||||||||||| |||||||||||||| || ||||||| ||||||||||
Sbjct: 980  cacccgtggatcgtgagtggcggaggagcccgggcaatggagcggccaacctga 1033
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>gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome
          Length = 4607203

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 505     ggatgatgatgcagcagcagca 526
               ||||||||||||||||||||||
Sbjct: 3169470 ggatgatgatgcagcagcagca 3169491
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>gb|AC129716.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0068N01, complete sequence
          Length = 152233

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 506   gatgatgatgcagcagcagcag 527
             ||||||||||||||||||||||
Sbjct: 63978 gatgatgatgcagcagcagcag 63957
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>ref|XM_813237.1| Trypanosoma cruzi strain CL Brener hypothetical protein
            (Tc00.1047053511217.100) partial mRNA
          Length = 3693

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 506  gatgatgatgcagcagcagcag 527
            ||||||||||||||||||||||
Sbjct: 3259 gatgatgatgcagcagcagcag 3280
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>gb|AE014075.1| Escherichia coli CFT073, complete genome
          Length = 5231428

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 505     ggatgatgatgcagcagcagca 526
               ||||||||||||||||||||||
Sbjct: 3613125 ggatgatgatgcagcagcagca 3613146
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>gb|CP000243.1| Escherichia coli UTI89, complete genome
          Length = 5065741

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 505     ggatgatgatgcagcagcagca 526
               ||||||||||||||||||||||
Sbjct: 3402073 ggatgatgatgcagcagcagca 3402094
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>gb|U00096.2| Escherichia coli K-12 MG1655, complete genome
          Length = 4639675

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 505     ggatgatgatgcagcagcagca 526
               ||||||||||||||||||||||
Sbjct: 3174356 ggatgatgatgcagcagcagca 3174377
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>dbj|AP009048.1| Escherichia coli W3110 DNA, complete genome
          Length = 4646332

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 505     ggatgatgatgcagcagcagca 526
               ||||||||||||||||||||||
Sbjct: 3174990 ggatgatgatgcagcagcagca 3175011
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>gb|AC010042.8| Drosophila melanogaster 3L BAC RP98-5K6 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 157225

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 506   gatgatgatgcagcagcagcag 527
             ||||||||||||||||||||||
Sbjct: 41480 gatgatgatgcagcagcagcag 41501
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>ref|NM_206299.1| Drosophila melanogaster Clock CG7391-RC, transcript variant C (Clk),
            mRNA
          Length = 3588

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 506  gatgatgatgcagcagcagcag 527
            ||||||||||||||||||||||
Sbjct: 2560 gatgatgatgcagcagcagcag 2581
to top
>ref|NM_170628.1| Drosophila melanogaster Clock CG7391-RB, transcript variant B (Clk),
            mRNA
          Length = 3576

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 506  gatgatgatgcagcagcagcag 527
            ||||||||||||||||||||||
Sbjct: 2548 gatgatgatgcagcagcagcag 2569
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>ref|NM_079240.2| Drosophila melanogaster Clock CG7391-RA, transcript variant A (Clk),
            mRNA
          Length = 3684

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 506  gatgatgatgcagcagcagcag 527
            ||||||||||||||||||||||
Sbjct: 2656 gatgatgatgcagcagcagcag 2677
to top
>ref|NM_001014576.1| Drosophila melanogaster Clock CG7391-RD, transcript variant D (Clk),
            mRNA
          Length = 3696

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 506  gatgatgatgcagcagcagcag 527
            ||||||||||||||||||||||
Sbjct: 2668 gatgatgatgcagcagcagcag 2689
to top
>ref|NM_001014575.1| Drosophila melanogaster Clock CG7391-RE, transcript variant E (Clk),
            mRNA
          Length = 3694

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 506  gatgatgatgcagcagcagcag 527
            ||||||||||||||||||||||
Sbjct: 2666 gatgatgatgcagcagcagcag 2687
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>ref|NM_001014574.1| Drosophila melanogaster Clock CG7391-RF, transcript variant F (Clk),
            mRNA
          Length = 3694

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 506  gatgatgatgcagcagcagcag 527
            ||||||||||||||||||||||
Sbjct: 2666 gatgatgatgcagcagcagcag 2687
to top
>gb|AC091225.2| Drosophila melanogaster 3L BAC RP98-34B24 (Roswell Park Cancer
            Institute Drosophila BAC Library) complete sequence
          Length = 174774

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 506  gatgatgatgcagcagcagcag 527
            ||||||||||||||||||||||
Sbjct: 7264 gatgatgatgcagcagcagcag 7243
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>ref|XM_687846.1| PREDICTED: Danio rerio similar to Nuclear receptor coactivator 3
            (NCoA-3) (Thyroid hormone receptor activator molecule 1)
            (TRAM-1) (ACTR) (Receptor-associated coactivator 3)
            (RAC-3) (Amplified in breast cancer-1 protein) (AIB-1)
            (Steroid receptor coactivator protein 3) (...
            (LOC564519), partial mRNA
          Length = 3997

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 506  gatgatgatgcagcagcagcag 527
            ||||||||||||||||||||||
Sbjct: 3837 gatgatgatgcagcagcagcag 3858
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>emb|BX296530.7| Zebrafish DNA sequence from clone DKEY-22H2 in linkage group 11, complete
              sequence
          Length = 153078

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 506    gatgatgatgcagcagcagcag 527
              ||||||||||||||||||||||
Sbjct: 152380 gatgatgatgcagcagcagcag 152401
to top
>gb|AC079022.2|AC079022 Oryza sativa chromosome 5 clone P0574H01, complete sequence
          Length = 151589

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 506  gatgatgatgcagcagcagcag 527
            ||||||||||||||||||||||
Sbjct: 2129 gatgatgatgcagcagcagcag 2108
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5,
              complete sequence
          Length = 29737217

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 506    gatgatgatgcagcagcagcag 527
              ||||||||||||||||||||||
Sbjct: 402331 gatgatgatgcagcagcagcag 402310
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>gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome
          Length = 4599354

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 505     ggatgatgatgcagcagcagca 526
               ||||||||||||||||||||||
Sbjct: 3158133 ggatgatgatgcagcagcagca 3158154
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>gb|AE003557.4| Drosophila melanogaster chromosome 3L, section 28 of 83 of the
            complete sequence
          Length = 287988

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 506  gatgatgatgcagcagcagcag 527
            ||||||||||||||||||||||
Sbjct: 1416 gatgatgatgcagcagcagcag 1395
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>gb|AF067207.1|AF067207 Drosophila melanogaster CLOCK mRNA, complete cds
          Length = 3582

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 506  gatgatgatgcagcagcagcag 527
            ||||||||||||||||||||||
Sbjct: 2654 gatgatgatgcagcagcagcag 2675
to top
>dbj|D16557.1|ECOICC Escherichia coli gene for Icc protein, complete cds
          Length = 2360

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 505  ggatgatgatgcagcagcagca 526
            ||||||||||||||||||||||
Sbjct: 1484 ggatgatgatgcagcagcagca 1463
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>gb|AF069997.1|AF069997 Drosophila melanogaster CLOCK mRNA, complete cds
          Length = 3084

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 506  gatgatgatgcagcagcagcag 527
            ||||||||||||||||||||||
Sbjct: 2298 gatgatgatgcagcagcagcag 2319
to top
>gb|AF065133.1|AF065133 Drosophila melanogaster CLOCK (Clk) mRNA, complete cds
          Length = 3551

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 506  gatgatgatgcagcagcagcag 527
            ||||||||||||||||||||||
Sbjct: 2547 gatgatgatgcagcagcagcag 2568
to top
>gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome
          Length = 5528445

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 505     ggatgatgatgcagcagcagca 526
               ||||||||||||||||||||||
Sbjct: 3989743 ggatgatgatgcagcagcagca 3989764
to top
>dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome
          Length = 5498450

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 505     ggatgatgatgcagcagcagca 526
               ||||||||||||||||||||||
Sbjct: 3922428 ggatgatgatgcagcagcagca 3922449
to top
>gb|CP000034.1| Shigella dysenteriae Sd197, complete genome
          Length = 4369232

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 505     ggatgatgatgcagcagcagca 526
               ||||||||||||||||||||||
Sbjct: 2971205 ggatgatgatgcagcagcagca 2971184
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>gb|U28377.1|ECU28377 Escherichia coli K-12 genome; approximately 65 to 68 minutes
          Length = 141744

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 505    ggatgatgatgcagcagcagca 526
              ||||||||||||||||||||||
Sbjct: 130722 ggatgatgatgcagcagcagca 130743
to top
>gb|CP000036.1| Shigella boydii Sb227, complete genome
          Length = 4519823

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 505     ggatgatgatgcagcagcagca 526
               ||||||||||||||||||||||
Sbjct: 2894315 ggatgatgatgcagcagcagca 2894336
to top
>gb|CP000038.1| Shigella sonnei Ss046, complete genome
          Length = 4825265

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 505     ggatgatgatgcagcagcagca 526
               ||||||||||||||||||||||
Sbjct: 3329843 ggatgatgatgcagcagcagca 3329864
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>gb|AC102156.16| Mus musculus chromosome 18, clone RP23-334L7, complete sequence
          Length = 221632

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 515   gcagcagcagcaggttttgta 535
             |||||||||||||||||||||
Sbjct: 11740 gcagcagcagcaggttttgta 11720
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>ref|XM_514700.1| PREDICTED: Pan troglodytes LOC458308 (LOC458308), mRNA
          Length = 4464

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 507  atgatgatgcagcagcagcag 527
            |||||||||||||||||||||
Sbjct: 3904 atgatgatgcagcagcagcag 3924
to top
>gb|AY225363.1| Pan troglodytes nuclear receptor coactivator 3 (NCOA3) gene,
           partial cds
          Length = 131

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 507 atgatgatgcagcagcagcag 527
           |||||||||||||||||||||
Sbjct: 29  atgatgatgcagcagcagcag 49
to top
>gb|AF241732.1| Homo sapiens chromosome X clone XXcos-P117 map p11.4, complete
            sequence
          Length = 42930

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 467  aatttgttttctccttgttgt 487
            |||||||||||||||||||||
Sbjct: 5284 aatttgttttctccttgttgt 5304
to top
>gb|AF241731.2| Homo sapiens chromosome X clone LL0XNC01-45P13 map p11.4, complete
             sequence
          Length = 44977

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 467   aatttgttttctccttgttgt 487
             |||||||||||||||||||||
Sbjct: 24208 aatttgttttctccttgttgt 24228
to top
>gb|AC157903.3| Mus musculus chromosome 18, clone RP23-341E18, complete sequence
          Length = 198984

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 515   gcagcagcagcaggttttgta 535
             |||||||||||||||||||||
Sbjct: 38035 gcagcagcagcaggttttgta 38055
to top
>gb|AY462627.1| Plasmodium falciparum erythrocyte membrane protein 1 (var) mRNA,
           partial cds, CIDR1alpha region
          Length = 408

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 504 tggatgatgatgcagcagcag 524
           |||||||||||||||||||||
Sbjct: 333 tggatgatgatgcagcagcag 353
to top
>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome
          Length = 5928787

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 102     aggcggatgatgtgccgcgac 122
               |||||||||||||||||||||
Sbjct: 3994745 aggcggatgatgtgccgcgac 3994725
to top
>ref|NM_181659.1| Homo sapiens nuclear receptor coactivator 3 (NCOA3), transcript
            variant 1, mRNA
          Length = 7935

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 507  atgatgatgcagcagcagcag 527
            |||||||||||||||||||||
Sbjct: 3938 atgatgatgcagcagcagcag 3958
to top
>ref|NM_006534.2| Homo sapiens nuclear receptor coactivator 3 (NCOA3), transcript
            variant 2, mRNA
          Length = 7923

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 507  atgatgatgcagcagcagcag 527
            |||||||||||||||||||||
Sbjct: 3926 atgatgatgcagcagcagcag 3946
to top
>emb|AL034418.5|HS1049G16 Human DNA sequence from clone RP5-1049G16 on chromosome 20q12-13.2
             Contains the 3' end of the NCOA3 gene for nuclear receptor
             coactivator 3, an RPS3A (ribosomal protein S3A) pseudogene
             and the 3' end of the gene for a novel protein similar to
             glucosamine-6-sulfatases (SULF2) (sulfatase 2, H-SULF2,
             KIAA1247), complete sequence
          Length = 86453

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 507   atgatgatgcagcagcagcag 527
             |||||||||||||||||||||
Sbjct: 67025 atgatgatgcagcagcagcag 67045
to top
>gb|BC092516.1| Homo sapiens nuclear receptor coactivator 3, transcript variant 1,
            mRNA (cDNA clone MGC:104986 IMAGE:3064877), complete cds
          Length = 4807

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 507  atgatgatgcagcagcagcag 527
            |||||||||||||||||||||
Sbjct: 3946 atgatgatgcagcagcagcag 3966
to top
>gb|BC097784.1| Xenopus laevis cDNA clone MGC:115491 IMAGE:6868636, complete cds
          Length = 2376

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 509 gatgatgcagcagcagcaggt 529
           |||||||||||||||||||||
Sbjct: 289 gatgatgcagcagcagcaggt 309
to top
>gb|AC173996.2| Pan troglodytes chromosome X clone PTB-074P14 map human ortholog p11.4,
             complete sequence
          Length = 160565

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 467   aatttgttttctccttgttgt 487
             |||||||||||||||||||||
Sbjct: 76803 aatttgttttctccttgttgt 76823
to top
>gb|BC044297.1| Xenopus laevis, Similar to RIKEN cDNA 4732481H14 gene, clone
           IMAGE:5570087, mRNA
          Length = 2096

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 509 gatgatgcagcagcagcaggt 529
           |||||||||||||||||||||
Sbjct: 2   gatgatgcagcagcagcaggt 22
to top
>gb|AC102162.6| Mus musculus chromosome 18, clone RP23-419P4, complete sequence
          Length = 194165

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 515    gcagcagcagcaggttttgta 535
              |||||||||||||||||||||
Sbjct: 148497 gcagcagcagcaggttttgta 148477
to top
>ref|XM_564199.1| Anopheles gambiae str. PEST ENSANGP00000028013
           (ENSANGG00000022406), partial mRNA
          Length = 1731

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 506 gatgatgatgcagcagcagca 526
           |||||||||||||||||||||
Sbjct: 744 gatgatgatgcagcagcagca 764
to top
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 327     gcaccggccgacggcgtcgatacgg 351
               |||||||||| ||||||||||||||
Sbjct: 2740188 gcaccggccgccggcgtcgatacgg 2740212
to top
>gb|AF016031.1|AF016031 Homo sapiens thyroid hormone receptor activator molecule (TRAM-1)
            mRNA, complete cds
          Length = 4668

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 507  atgatgatgcagcagcagcag 527
            |||||||||||||||||||||
Sbjct: 3924 atgatgatgcagcagcagcag 3944
to top
>gb|AF012108.1|AF012108 Homo sapiens Amplified in Breast Cancer (AIB1) mRNA, complete cds
          Length = 6835

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 507  atgatgatgcagcagcagcag 527
            |||||||||||||||||||||
Sbjct: 3921 atgatgatgcagcagcagcag 3941
to top
>gb|AF010227.1|AF010227 Homo sapiens receptor-associated coactivator 3 (RAC3) mRNA, complete
            cds
          Length = 4495

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 507  atgatgatgcagcagcagcag 527
            |||||||||||||||||||||
Sbjct: 3806 atgatgatgcagcagcagcag 3826
to top
>gb|AF023138.1|DVBIGB5 Drosophila virilis big brain (bib) gene, exon 4 and exon 5, complete
            cds
          Length = 3708

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 507  atgatgatgcagcagcagcag 527
            |||||||||||||||||||||
Sbjct: 2422 atgatgatgcagcagcagcag 2442
to top
>dbj|AB209863.1| Homo sapiens mRNA for nuclear receptor coactivator 3 isoform a
            variant protein
          Length = 5256

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 507  atgatgatgcagcagcagcag 527
            |||||||||||||||||||||
Sbjct: 3928 atgatgatgcagcagcagcag 3948
to top
>gb|BC086712.1| Danio rerio zgc:101641, mRNA (cDNA clone MGC:101641 IMAGE:7225745),
            complete cds
          Length = 2931

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 506  gatgatgatgcagcagcagc 525
            ||||||||||||||||||||
Sbjct: 1810 gatgatgatgcagcagcagc 1829
to top
>ref|NM_124872.2| Arabidopsis thaliana ATRBP45A; RNA binding AT5G54900 (ATRBP45A)
           mRNA, complete cds
          Length = 1413

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 504 tggatgatgatgcagcagcagcag 527
           |||||||||||||| |||||||||
Sbjct: 93  tggatgatgatgcaacagcagcag 116
to top
>gb|CP000097.1| Synechococcus sp. CC9902, complete genome
          Length = 2234828

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 515    gcagcagcagcaggttttgt 534
              ||||||||||||||||||||
Sbjct: 694814 gcagcagcagcaggttttgt 694833
to top
>gb|U80737.1|HSU80737 Homo sapiens CAGH16 mRNA, complete cds
          Length = 3487

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 507  atgatgatgcagcagcagca 526
            ||||||||||||||||||||
Sbjct: 1136 atgatgatgcagcagcagca 1155
to top
>gb|AY225364.1| Gorilla gorilla nuclear receptor coactivator 3 (NCOA3) gene,
           partial cds
          Length = 128

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 507 atgatgatgcagcagcagca 526
           ||||||||||||||||||||
Sbjct: 29  atgatgatgcagcagcagca 48
to top
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 19      tgctctcggccgtgatgcgg 38
               ||||||||||||||||||||
Sbjct: 2772742 tgctctcggccgtgatgcgg 2772761
to top
>gb|AC135500.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0034J04
              map S1466, complete sequence
          Length = 140012

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 465    ttaatttgttttctccttgttgtg 488
              ||||||| ||||||||||||||||
Sbjct: 102126 ttaattttttttctccttgttgtg 102149
to top
>gb|AC110036.8| Mus musculus chromosome 7, clone RP23-254F9, complete sequence
          Length = 185681

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 464    cttaatttgttttctccttg 483
              ||||||||||||||||||||
Sbjct: 123455 cttaatttgttttctccttg 123474
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 42       agcgttcggttccctccgag 61
                ||||||||||||||||||||
Sbjct: 28251336 agcgttcggttccctccgag 28251317



 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 465      ttaatttgttttctccttgttgtg 488
                ||||||| ||||||||||||||||
Sbjct: 22832195 ttaattttttttctccttgttgtg 22832218
to top
>gb|AC139939.6| Mus musculus chromosome 1, clone RP23-458O23, complete sequence
          Length = 175033

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 294    cagagaagtagagagatagt 313
              ||||||||||||||||||||
Sbjct: 112918 cagagaagtagagagatagt 112899
to top
>gb|AC136972.3| Oryza sativa chromosome 3 BAC OSJNBb0007E22 genomic sequence, complete
             sequence
          Length = 184783

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 465   ttaatttgttttctccttgttgtg 488
             ||||||| ||||||||||||||||
Sbjct: 34725 ttaattttttttctccttgttgtg 34748
to top
>emb|AL590226.23| Human DNA sequence from clone RP11-251M1 on chromosome 9 Contains a
             novel gene, the gene for  NEU1 protein (ZNEU1), the AGPAT2
             gene for 1-acylglycerol-3-phosphate O-acyltransferase 2
             (lysophosphatidic acid acyltransferase, beta), the 5' end
             of the gene for a novel protein similar to mouse
             pancreatitis-induced protein 49 (PIP49), the 3' end of a
             novel gene (FLJ30346) and seven CpG islands, complete
             sequence
          Length = 149567

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 278   tggggccccggctctgcaga 297
             ||||||||||||||||||||
Sbjct: 71135 tggggccccggctctgcaga 71154
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>emb|BX294018.1|NCB8P8 Neurospora crassa DNA linkage group V BAC clone B8P8
          Length = 75910

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 496   ctgcatgatggatgatgatg 515
             ||||||||||||||||||||
Sbjct: 17435 ctgcatgatggatgatgatg 17454
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>emb|AJ851458.1| Gallus gallus mRNA for hypothetical protein, clone 3i15
          Length = 4456

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 175 gcggcggaggagcccgagcg 194
           ||||||||||||||||||||
Sbjct: 110 gcggcggaggagcccgagcg 129
to top
>gb|AC161929.4| Mus musculus chromosome 7, clone RP23-120D7, complete sequence
          Length = 193326

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 464    cttaatttgttttctccttg 483
              ||||||||||||||||||||
Sbjct: 176818 cttaatttgttttctccttg 176837
to top
>gb|AC087373.4| Homo sapiens chromosome 11, clone RP11-54J7, complete sequence
          Length = 200604

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 293   gcagagaagtagagagatag 312
             ||||||||||||||||||||
Sbjct: 15064 gcagagaagtagagagatag 15045
to top
>ref|XM_694520.1| PREDICTED: Danio rerio similar to BMP2 inducible kinase
           (LOC573854), mRNA
          Length = 3077

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 506 gatgatgatgcagcagcagc 525
           ||||||||||||||||||||
Sbjct: 912 gatgatgatgcagcagcagc 931
to top
>ref|XM_704579.1| PREDICTED: Danio rerio similar to BMP2 inducible kinase, transcript
            variant 2 (LOC573082), mRNA
          Length = 1824

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 506  gatgatgatgcagcagcagc 525
            ||||||||||||||||||||
Sbjct: 1422 gatgatgatgcagcagcagc 1441
to top
>ref|XM_689585.1| PREDICTED: Danio rerio similar to BMP2 inducible kinase, transcript
            variant 1 (LOC573082), mRNA
          Length = 3175

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 506  gatgatgatgcagcagcagc 525
            ||||||||||||||||||||
Sbjct: 2012 gatgatgatgcagcagcagc 2031
to top
>ref|NM_001012825.1| Gallus gallus RAS p21 protein activator 3 (RASA3), mRNA
          Length = 4456

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 175 gcggcggaggagcccgagcg 194
           ||||||||||||||||||||
Sbjct: 110 gcggcggaggagcccgagcg 129
to top
>gb|AC087797.5| Oryza sativa chromosome 3 BAC OSJNBb0022E02 genomic sequence, complete
              sequence
          Length = 122497

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 42     agcgttcggttccctccgag 61
              ||||||||||||||||||||
Sbjct: 102477 agcgttcggttccctccgag 102458
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>gb|AC158522.2| Mus musculus BAC clone RP23-400N21 from chromosome 14, complete
            sequence
          Length = 209322

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 526  aggttttgtactgtgtatat 545
            ||||||||||||||||||||
Sbjct: 2378 aggttttgtactgtgtatat 2359
to top
>emb|BX640536.6| Zebrafish DNA sequence from clone CH211-191A6 in linkage group 5,
             complete sequence
          Length = 137923

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 506   gatgatgatgcagcagcagc 525
             ||||||||||||||||||||
Sbjct: 37226 gatgatgatgcagcagcagc 37207
to top
>gb|AF324983.2|AF324983 Arabidopsis thaliana AT5g54900 (AT5g54900/MBG8_17) mRNA, complete
           cds
          Length = 1395

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 504 tggatgatgatgcagcagcagcag 527
           |||||||||||||| |||||||||
Sbjct: 93  tggatgatgatgcaacagcagcag 116
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 418      agtgaagaagcagtagcagc 437
                ||||||||||||||||||||
Sbjct: 16801164 agtgaagaagcagtagcagc 16801183
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 42       agcgttcggttccctccgag 61
                ||||||||||||||||||||
Sbjct: 28342660 agcgttcggttccctccgag 28342641



 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 465      ttaatttgttttctccttgttgtg 488
                ||||||| ||||||||||||||||
Sbjct: 22825223 ttaattttttttctccttgttgtg 22825246
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 426      agcagtagcagctagctcca 445
                ||||||||||||||||||||
Sbjct: 38661374 agcagtagcagctagctcca 38661393
to top
>dbj|AP003431.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1099D03
          Length = 191022

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 426    agcagtagcagctagctcca 445
              ||||||||||||||||||||
Sbjct: 119347 agcagtagcagctagctcca 119366
to top
>ref|NM_001008644.1| Danio rerio zgc:101641 (zgc:101641), mRNA
          Length = 2931

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 506  gatgatgatgcagcagcagc 525
            ||||||||||||||||||||
Sbjct: 1810 gatgatgatgcagcagcagc 1829
to top
>dbj|AP003808.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1115_C05
          Length = 146585

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 418    agtgaagaagcagtagcagc 437
              ||||||||||||||||||||
Sbjct: 141076 agtgaagaagcagtagcagc 141095
to top
>dbj|AP003806.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1103_E04
          Length = 111354

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 418   agtgaagaagcagtagcagc 437
             ||||||||||||||||||||
Sbjct: 17731 agtgaagaagcagtagcagc 17750
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>dbj|AB005232.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MBG8
          Length = 80315

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 504   tggatgatgatgcagcagcagcag 527
             |||||||||||||| |||||||||
Sbjct: 54478 tggatgatgatgcaacagcagcag 54501
to top
>emb|AL929264.4| Zebrafish DNA sequence from clone CH211-59C24 in linkage group 18,
            complete sequence
          Length = 171914

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 526  aggttttgtactgtgtatat 545
            ||||||||||||||||||||
Sbjct: 5181 aggttttgtactgtgtatat 5200
to top
>emb|X87329.1|PSPAF1 P.anserina car1 gene
          Length = 2204

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 508 tgatgatgcagcagcagcag 527
           ||||||||||||||||||||
Sbjct: 359 tgatgatgcagcagcagcag 340
to top
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
          Length = 2595221

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 81     ccggccgccaaggacctgat 100
              ||||||||||||||||||||
Sbjct: 878124 ccggccgccaaggacctgat 878105
to top
>emb|BX004805.6| Zebrafish DNA sequence from clone DKEY-196N8 in linkage group 5,
             complete sequence
          Length = 83537

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 506   gatgatgatgcagcagcagc 525
             ||||||||||||||||||||
Sbjct: 70190 gatgatgatgcagcagcagc 70171
to top
>gb|AF036892.1|AF036892 Homo sapiens nuclear receptor coactivator (ACTR) mRNA, complete cds
          Length = 6754

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 507  atgatgatgcagcagcagca 526
            ||||||||||||||||||||
Sbjct: 3889 atgatgatgcagcagcagca 3908


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,392,106
Number of Sequences: 3902068
Number of extensions: 4392106
Number of successful extensions: 101532
Number of sequences better than 10.0: 107
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 100473
Number of HSP's gapped (non-prelim): 1058
length of query: 585
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 562
effective length of database: 17,143,297,704
effective search space: 9634533309648
effective search space used: 9634533309648
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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