ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags39k17
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_189389.1| Oryza sativa (japonica cultivar-group), predic... 410 e-111
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 410 e-111
3dbj|AP004365.3| Oryza sativa (japonica cultivar-group) genomic D... 410 e-111
4gb|AF287967.1| Homo sapiens homeobox B7 (HOXB7) gene, partial cd... 44 0.56
5emb|X58431.1|HSHOX22 Human Hox2.2 gene for a homeobox protein 44 0.56
6emb|AJ270993.1|HSA270993 Homo sapiens mRNA for homeobox protein ... 44 0.56
7gb|AC103702.3| Homo sapiens chromosome 17, clone RP11-357H14, co... 44 0.56
8dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.56
9gb|AC009789.21|AC009789 Homo sapiens chromosome 17, clone RP11-3... 44 0.56
10dbj|AP005445.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.56
11emb|AJ325378.1|HSA325378 Homo sapiens genomic sequence surroundi... 44 0.56
12emb|AJ323647.1|HSA323647 Homo sapiens genomic sequence surroundi... 44 0.56
13gb|AC139638.14| Mus musculus chromosome 10, clone RP24-208F10, c... 42 2.2
14ref|NM_187558.1| Oryza sativa (japonica cultivar-group), predic... 42 2.2
15gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 2.2
16dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
17gb|AC118980.2| Oryza sativa (japonica cultivar-group) chromosome... 42 2.2
18dbj|AK073382.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.2
19emb|AL589661.21| Mouse DNA sequence from clone RP23-58B7 on chro... 42 2.2
20ref|XM_481049.1| Oryza sativa (japonica cultivar-group), mRNA 40 8.8
21gb|AY494981.1| Triticum turgidum A genome HMW glutenin A gene lo... 40 8.8
22ref|XM_367690.1| Magnaporthe grisea 70-15 chromosome III hypothe... 40 8.8
23gb|AC093952.2| Oryza sativa (japonica cultivar-group) chromosome... 40 8.8
24gb|DQ477886.1| Porcine respiratory and reproductive syndrome vir... 40 8.8
25gb|DQ474771.1| Porcine respiratory and reproductive syndrome vir... 40 8.8
26gb|CP000316.1| Polaromonas sp. JS666, complete genome 40 8.8
27gb|AF475121.1| Triticum aestivum 19 kDa globulin mRNA, partial cds 40 8.8
28ref|XM_968653.1| PREDICTED: Tribolium castaneum similar to CG496... 40 8.8
29ref|XM_792350.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 8.8
30emb|Z93338.1|ASZ93338 A.simplex ksdI genes and three open readin... 40 8.8
31gb|AC105292.3| Drosophila melanogaster X BAC RP98-18F10 (Roswell... 40 8.8
32gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 40 8.8
33gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 40 8.8
34dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.8
35dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.8
36dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.8
37gb|AC134240.2| Oryza sativa (japonica cultivar-group) chromosome... 40 8.8
38dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 8.8
39dbj|AP004155.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.8
40dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 8.8
41ref|NM_211275.1| Eremothecium gossypii AFR373Wp (AFR373W), mRNA 40 8.8
42emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 40 8.8
43gb|AE003447.5| Drosophila melanogaster chromosome X, section 31 ... 40 8.8
44gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 8.8
45emb|AL731762.2|CNS07YPW Oryza sativa chromosome 12, . BAC OJ1119... 40 8.8
46dbj|D37969.1| Arthrobacter simplex ksdR, ksdD and ksdI genes for... 40 8.8 
>ref|NM_189389.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1083

 Score =  410 bits (207), Expect = e-111
 Identities = 273/295 (92%)
 Strand = Plus / Plus

                                                                       
Query: 14  tgcgagctcgccaagtcgctgctccgctcgcacctgccgcccttcctcgtgcccccgctc 73
           ||||||||||||||||||||||||||| | ||||| || |||||||||||||| ||||||
Sbjct: 433 tgcgagctcgccaagtcgctgctccgcccccacctcccacccttcctcgtgccgccgctc 492

                                                                       
Query: 74  gccggcgccagcggcaacatctcctcctccgccatcatggtgcccaaggagctcatcacg 133
           |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| 
Sbjct: 493 gccggcgccagcggcaacgtctcctcctccgccatcatggtccccaaggagctcatcacc 552

                                                                       
Query: 134 cagcgcctccagtcgggcgccgccacgggccgctcctggcaggtgctgctccagatcctc 193
           ||||||||||| || |||||||||| ||||||||| ||||||||||| || |||||||||
Sbjct: 553 cagcgcctccaatccggcgccgccaagggccgctcatggcaggtgctccttcagatcctc 612

                                                                       
Query: 194 cagaccgacggcttcttcggcctctacgcgggctacgccgccacgctcctccgcaacctc 253
           ||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 613 cagaccgacggattcttcggcctctacgccggctacgccgccaccctcctccgcaacctc 672

                                                                  
Query: 254 cccgccggcgtgctcagctactcctccttcgagtacctcaaggccttcgccctca 308
           ||||| || || |||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 673 cccgcgggggtcctcagctactcctccttcgagtacctcaaggcattcaccctca 727



 Score =  234 bits (118), Expect = 3e-58
 Identities = 220/254 (86%)
 Strand = Plus / Plus

                                                                        
Query: 332  acgccgggggagagcgtgctctgcggcgccctcgccggcgcgatatccgcggggctcacc 391
            |||||||| ||||| ||||| |||||||| ||||| || || ||||| |||| |||||||
Sbjct: 751  acgccgggagagagtgtgctgtgcggcgctctcgcgggggccatatcggcggcgctcacc 810

                                                                        
Query: 392  accccgctcgacgtcgtcaagacgcggctgatgaccagggtgggcgcccaggggagccgc 451
            |||||||||||||||||||||||||| || ||||||||||||||| || |||||||||||
Sbjct: 811  accccgctcgacgtcgtcaagacgcgcctcatgaccagggtgggcaccgaggggagccgc 870

                                                                        
Query: 452  acggtcgtgggcacgatgcaggaggtcatcgccgaggaaggcctgatgggcctgtcccgg 511
            || || || || || |||| ||||||| |||||||||| || ||||||||| ||||||||
Sbjct: 871  accgtggttgggacaatgcgggaggtcgtcgccgaggaggggctgatgggcttgtcccgg 930

                                                                        
Query: 512  gggatcggaccgagggtcctgcacagcgcatgcttcgctgcgattggctactgcgcattt 571
            ||||| || |||||||| ||||||||||| |||||||| ||| | || |||||||| || 
Sbjct: 931  gggattggtccgagggtgctgcacagcgcttgcttcgccgcgctgggatactgcgccttc 990

                          
Query: 572  gagacggccaggct 585
            |||||||| |||||
Sbjct: 991  gagacggcgaggct 1004
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  410 bits (207), Expect = e-111
 Identities = 273/295 (92%)
 Strand = Plus / Plus

                                                                            
Query: 14       tgcgagctcgccaagtcgctgctccgctcgcacctgccgcccttcctcgtgcccccgctc 73
                ||||||||||||||||||||||||||| | ||||| || |||||||||||||| ||||||
Sbjct: 42540491 tgcgagctcgccaagtcgctgctccgcccccacctcccacccttcctcgtgccgccgctc 42540550

                                                                            
Query: 74       gccggcgccagcggcaacatctcctcctccgccatcatggtgcccaaggagctcatcacg 133
                |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| 
Sbjct: 42540551 gccggcgccagcggcaacgtctcctcctccgccatcatggtccccaaggagctcatcacc 42540610

                                                                            
Query: 134      cagcgcctccagtcgggcgccgccacgggccgctcctggcaggtgctgctccagatcctc 193
                ||||||||||| || |||||||||| ||||||||| ||||||||||| || |||||||||
Sbjct: 42540611 cagcgcctccaatccggcgccgccaagggccgctcatggcaggtgctccttcagatcctc 42540670

                                                                            
Query: 194      cagaccgacggcttcttcggcctctacgcgggctacgccgccacgctcctccgcaacctc 253
                ||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 42540671 cagaccgacggattcttcggcctctacgccggctacgccgccaccctcctccgcaacctc 42540730

                                                                       
Query: 254      cccgccggcgtgctcagctactcctccttcgagtacctcaaggccttcgccctca 308
                ||||| || || |||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 42540731 cccgcgggggtcctcagctactcctccttcgagtacctcaaggcattcaccctca 42540785



 Score =  234 bits (118), Expect = 3e-58
 Identities = 220/254 (86%)
 Strand = Plus / Plus

                                                                            
Query: 332      acgccgggggagagcgtgctctgcggcgccctcgccggcgcgatatccgcggggctcacc 391
                |||||||| ||||| ||||| |||||||| ||||| || || ||||| |||| |||||||
Sbjct: 42540809 acgccgggagagagtgtgctgtgcggcgctctcgcgggggccatatcggcggcgctcacc 42540868

                                                                            
Query: 392      accccgctcgacgtcgtcaagacgcggctgatgaccagggtgggcgcccaggggagccgc 451
                |||||||||||||||||||||||||| || ||||||||||||||| || |||||||||||
Sbjct: 42540869 accccgctcgacgtcgtcaagacgcgcctcatgaccagggtgggcaccgaggggagccgc 42540928

                                                                            
Query: 452      acggtcgtgggcacgatgcaggaggtcatcgccgaggaaggcctgatgggcctgtcccgg 511
                || || || || || |||| ||||||| |||||||||| || ||||||||| ||||||||
Sbjct: 42540929 accgtggttgggacaatgcgggaggtcgtcgccgaggaggggctgatgggcttgtcccgg 42540988

                                                                            
Query: 512      gggatcggaccgagggtcctgcacagcgcatgcttcgctgcgattggctactgcgcattt 571
                ||||| || |||||||| ||||||||||| |||||||| ||| | || |||||||| || 
Sbjct: 42540989 gggattggtccgagggtgctgcacagcgcttgcttcgccgcgctgggatactgcgccttc 42541048

                              
Query: 572      gagacggccaggct 585
                |||||||| |||||
Sbjct: 42541049 gagacggcgaggct 42541062
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>dbj|AP004365.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0458E05
          Length = 193577

 Score =  410 bits (207), Expect = e-111
 Identities = 273/295 (92%)
 Strand = Plus / Plus

                                                                         
Query: 14    tgcgagctcgccaagtcgctgctccgctcgcacctgccgcccttcctcgtgcccccgctc 73
             ||||||||||||||||||||||||||| | ||||| || |||||||||||||| ||||||
Sbjct: 61374 tgcgagctcgccaagtcgctgctccgcccccacctcccacccttcctcgtgccgccgctc 61433

                                                                         
Query: 74    gccggcgccagcggcaacatctcctcctccgccatcatggtgcccaaggagctcatcacg 133
             |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| 
Sbjct: 61434 gccggcgccagcggcaacgtctcctcctccgccatcatggtccccaaggagctcatcacc 61493

                                                                         
Query: 134   cagcgcctccagtcgggcgccgccacgggccgctcctggcaggtgctgctccagatcctc 193
             ||||||||||| || |||||||||| ||||||||| ||||||||||| || |||||||||
Sbjct: 61494 cagcgcctccaatccggcgccgccaagggccgctcatggcaggtgctccttcagatcctc 61553

                                                                         
Query: 194   cagaccgacggcttcttcggcctctacgcgggctacgccgccacgctcctccgcaacctc 253
             ||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 61554 cagaccgacggattcttcggcctctacgccggctacgccgccaccctcctccgcaacctc 61613

                                                                    
Query: 254   cccgccggcgtgctcagctactcctccttcgagtacctcaaggccttcgccctca 308
             ||||| || || |||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 61614 cccgcgggggtcctcagctactcctccttcgagtacctcaaggcattcaccctca 61668



 Score =  234 bits (118), Expect = 3e-58
 Identities = 220/254 (86%)
 Strand = Plus / Plus

                                                                         
Query: 332   acgccgggggagagcgtgctctgcggcgccctcgccggcgcgatatccgcggggctcacc 391
             |||||||| ||||| ||||| |||||||| ||||| || || ||||| |||| |||||||
Sbjct: 61692 acgccgggagagagtgtgctgtgcggcgctctcgcgggggccatatcggcggcgctcacc 61751

                                                                         
Query: 392   accccgctcgacgtcgtcaagacgcggctgatgaccagggtgggcgcccaggggagccgc 451
             |||||||||||||||||||||||||| || ||||||||||||||| || |||||||||||
Sbjct: 61752 accccgctcgacgtcgtcaagacgcgcctcatgaccagggtgggcaccgaggggagccgc 61811

                                                                         
Query: 452   acggtcgtgggcacgatgcaggaggtcatcgccgaggaaggcctgatgggcctgtcccgg 511
             || || || || || |||| ||||||| |||||||||| || ||||||||| ||||||||
Sbjct: 61812 accgtggttgggacaatgcgggaggtcgtcgccgaggaggggctgatgggcttgtcccgg 61871

                                                                         
Query: 512   gggatcggaccgagggtcctgcacagcgcatgcttcgctgcgattggctactgcgcattt 571
             ||||| || |||||||| ||||||||||| |||||||| ||| | || |||||||| || 
Sbjct: 61872 gggattggtccgagggtgctgcacagcgcttgcttcgccgcgctgggatactgcgccttc 61931

                           
Query: 572   gagacggccaggct 585
             |||||||| |||||
Sbjct: 61932 gagacggcgaggct 61945
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>gb|AF287967.1| Homo sapiens homeobox B7 (HOXB7) gene, partial cds; and homeobox B6
             (HOXB6), homeobox B5 (HOXB5), homeobox B4 (HOXB4), and
             homeobox B3 (HOXB3) genes, complete cds
          Length = 59339

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 429   gggtgggcgcccaggggagccg 450
             ||||||||||||||||||||||
Sbjct: 10235 gggtgggcgcccaggggagccg 10214
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>emb|X58431.1|HSHOX22 Human Hox2.2 gene for a homeobox protein
          Length = 2786

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 429 gggtgggcgcccaggggagccg 450
           ||||||||||||||||||||||
Sbjct: 782 gggtgggcgcccaggggagccg 761
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>emb|AJ270993.1|HSA270993 Homo sapiens mRNA for homeobox protein (Hox-2.2 gene)
          Length = 3324

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 429  gggtgggcgcccaggggagccg 450
            ||||||||||||||||||||||
Sbjct: 1446 gggtgggcgcccaggggagccg 1425
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>gb|AC103702.3| Homo sapiens chromosome 17, clone RP11-357H14, complete sequence
          Length = 187386

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 429   gggtgggcgcccaggggagccg 450
             ||||||||||||||||||||||
Sbjct: 91814 gggtgggcgcccaggggagccg 91793
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 229      cgccgccacgctcctccgcaacctcc 254
                ||||||||||||||||||| ||||||
Sbjct: 28810713 cgccgccacgctcctccgccacctcc 28810738
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>gb|AC009789.21|AC009789 Homo sapiens chromosome 17, clone RP11-361K8, complete sequence
          Length = 168215

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 429   gggtgggcgcccaggggagccg 450
             ||||||||||||||||||||||
Sbjct: 95681 gggtgggcgcccaggggagccg 95660
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>dbj|AP005445.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0028E05
          Length = 157631

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 229    cgccgccacgctcctccgcaacctcc 254
              ||||||||||||||||||| ||||||
Sbjct: 118488 cgccgccacgctcctccgccacctcc 118513
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>emb|AJ325378.1|HSA325378 Homo sapiens genomic sequence surrounding NotI site, clone NB6-632R
          Length = 911

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 429 gggtgggcgcccaggggagccg 450
           ||||||||||||||||||||||
Sbjct: 491 gggtgggcgcccaggggagccg 470
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>emb|AJ323647.1|HSA323647 Homo sapiens genomic sequence surrounding NotI site, clone NB6-907R
          Length = 687

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 429 gggtgggcgcccaggggagccg 450
           ||||||||||||||||||||||
Sbjct: 491 gggtgggcgcccaggggagccg 470
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>gb|AC139638.14| Mus musculus chromosome 10, clone RP24-208F10, complete sequence
          Length = 154570

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 239    ctcctccgcaacctccccgcc 259
              |||||||||||||||||||||
Sbjct: 139355 ctcctccgcaacctccccgcc 139335
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>ref|NM_187558.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1392

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 239 ctcctccgcaacctccccgccggcg 263
           |||||||||||||||| ||||||||
Sbjct: 160 ctcctccgcaacctcctcgccggcg 184
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 239     ctcctccgcaacctccccgccggcg 263
               |||||||||||||||| ||||||||
Sbjct: 1001403 ctcctccgcaacctcctcgccggcg 1001427



 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 475     ggtcatcgccgaggaaggcc 494
               ||||||||||||||||||||
Sbjct: 8056329 ggtcatcgccgaggaaggcc 8056348
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 239     ctcctccgcaacctccccgccggcg 263
               |||||||||||||||| ||||||||
Sbjct: 1001401 ctcctccgcaacctcctcgccggcg 1001425



 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 475     ggtcatcgccgaggaaggcc 494
               ||||||||||||||||||||
Sbjct: 8054164 ggtcatcgccgaggaaggcc 8054183
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>gb|AC118980.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1263H11,
             complete sequence
          Length = 126827

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 239   ctcctccgcaacctccccgccggcg 263
             |||||||||||||||| ||||||||
Sbjct: 21618 ctcctccgcaacctcctcgccggcg 21642
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>dbj|AK073382.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033030H10, full
           insert sequence
          Length = 1807

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 239 ctcctccgcaacctccccgccggcg 263
           |||||||||||||||| ||||||||
Sbjct: 263 ctcctccgcaacctcctcgccggcg 287
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>emb|AL589661.21| Mouse DNA sequence from clone RP23-58B7 on chromosome 15, complete
             sequence
          Length = 241432

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 239   ctcctccgcaacctccccgcc 259
             |||||||||||||||||||||
Sbjct: 23476 ctcctccgcaacctccccgcc 23456
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>ref|XM_481049.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 753

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 28  gtcgctgctccgctcgcacc 47
           ||||||||||||||||||||
Sbjct: 378 gtcgctgctccgctcgcacc 397
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>gb|AY494981.1| Triticum turgidum A genome HMW glutenin A gene locus, sequence
          Length = 307015

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 355   cggcgccctcgccggcgcga 374
             ||||||||||||||||||||
Sbjct: 47455 cggcgccctcgccggcgcga 47436
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>ref|XM_367690.1| Magnaporthe grisea 70-15 chromosome III hypothetical protein
            (MG07601.4) partial mRNA
          Length = 3315

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 399  tcgacgtcgtcaagacgcgg 418
            ||||||||||||||||||||
Sbjct: 2483 tcgacgtcgtcaagacgcgg 2502
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>gb|AC093952.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1004_E02,
             complete sequence
          Length = 127642

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 199   cgacggcttcttcggcctct 218
             ||||||||||||||||||||
Sbjct: 62902 cgacggcttcttcggcctct 62921
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>gb|DQ477886.1| Porcine respiratory and reproductive syndrome virus isolate
           PRRSV0003890 envelope glycoprotein gene, complete cds
          Length = 603

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 69  cgctcgccggcgccagcggcaaca 92
           ||||||||||||||||| ||||||
Sbjct: 80  cgctcgccggcgccagcagcaaca 103
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>gb|DQ474771.1| Porcine respiratory and reproductive syndrome virus isolate
           PRRSV0000011 envelope glycoprotein gene, complete cds
          Length = 603

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 69  cgctcgccggcgccagcggcaaca 92
           |||||||| |||||||||||||||
Sbjct: 80  cgctcgccagcgccagcggcaaca 103
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>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 75      ccggcgccagcggcaacatc 94
               ||||||||||||||||||||
Sbjct: 4239115 ccggcgccagcggcaacatc 4239134
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>gb|AF475121.1| Triticum aestivum 19 kDa globulin mRNA, partial cds
          Length = 726

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 355 cggcgccctcgccggcgcga 374
           ||||||||||||||||||||
Sbjct: 220 cggcgccctcgccggcgcga 201
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>ref|XM_968653.1| PREDICTED: Tribolium castaneum similar to CG4963-PA (LOC662563),
           mRNA
          Length = 1125

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 387 tcaccaccccgctcgacgtc 406
           ||||||||||||||||||||
Sbjct: 698 tcaccaccccgctcgacgtc 717
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>ref|XM_792350.1| PREDICTED: Strongylocentrotus purpuratus similar to
           glycerophosphodiester phosphodiesterase domain
           containing 5 (LOC592845), partial mRNA
          Length = 1695

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 91  catctcctcctccgccatcatggt 114
           |||||||| |||||||||||||||
Sbjct: 501 catctcctactccgccatcatggt 524
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>emb|Z93338.1|ASZ93338 A.simplex ksdI genes and three open reading frames
          Length = 3289

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 355 cggcgccctcgccggcgcga 374
           ||||||||||||||||||||
Sbjct: 211 cggcgccctcgccggcgcga 230
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>gb|AC105292.3| Drosophila melanogaster X BAC RP98-18F10 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 161360

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 29    tcgctgctccgctcgcacct 48
             ||||||||||||||||||||
Sbjct: 16272 tcgctgctccgctcgcacct 16253
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>gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VI,
               complete sequence
          Length = 1813164

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 398     ctcgacgtcgtcaagacgcggctg 421
               ||||||||| ||||||||||||||
Sbjct: 1112887 ctcgacgtcatcaagacgcggctg 1112910
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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 348     tgctctgcggcgccctcgcc 367
               ||||||||||||||||||||
Sbjct: 2529240 tgctctgcggcgccctcgcc 2529221
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 475      ggtcatcgccgaggaaggcc 494
                ||||||||||||||||||||
Sbjct: 27407631 ggtcatcgccgaggaaggcc 27407650
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 28      gtcgctgctccgctcgcacc 47
               ||||||||||||||||||||
Sbjct: 9469651 gtcgctgctccgctcgcacc 9469632
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 199      cgacggcttcttcggcctct 218
                ||||||||||||||||||||
Sbjct: 23782081 cgacggcttcttcggcctct 23782100
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>gb|AC134240.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0081I10,
              complete sequence
          Length = 143298

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 475    ggtcatcgccgaggaaggcc 494
              ||||||||||||||||||||
Sbjct: 123692 ggtcatcgccgaggaaggcc 123711
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 154    cgccacgggccgctcctggc 173
              ||||||||||||||||||||
Sbjct: 168333 cgccacgggccgctcctggc 168314
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>dbj|AP004155.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1112_D12
          Length = 97572

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 28    gtcgctgctccgctcgcacc 47
             ||||||||||||||||||||
Sbjct: 94242 gtcgctgctccgctcgcacc 94223
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 18      agctcgccaagtcgctgctc 37
               ||||||||||||||||||||
Sbjct: 8941713 agctcgccaagtcgctgctc 8941694
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>ref|NM_211275.1| Eremothecium gossypii AFR373Wp (AFR373W), mRNA
          Length = 1404

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 398 ctcgacgtcgtcaagacgcggctg 421
           ||||||||| ||||||||||||||
Sbjct: 868 ctcgacgtcatcaagacgcggctg 891
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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 193     ccagaccgacggcttcttcg 212
               ||||||||||||||||||||
Sbjct: 2659044 ccagaccgacggcttcttcg 2659025
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>gb|AE003447.5| Drosophila melanogaster chromosome X, section 31 of 74 of the complete
              sequence
          Length = 288721

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 29     tcgctgctccgctcgcacct 48
              ||||||||||||||||||||
Sbjct: 252283 tcgctgctccgctcgcacct 252302
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 475      ggtcatcgccgaggaaggcc 494
                ||||||||||||||||||||
Sbjct: 27333231 ggtcatcgccgaggaaggcc 27333250
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>emb|AL731762.2|CNS07YPW Oryza sativa chromosome 12, . BAC OJ1119_E02 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 124605

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 475   ggtcatcgccgaggaaggcc 494
             ||||||||||||||||||||
Sbjct: 75951 ggtcatcgccgaggaaggcc 75970
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>dbj|D37969.1| Arthrobacter simplex ksdR, ksdD and ksdI genes for hypothetic
            regulatory protein, 3-ketosteroid-1-dehydrogenase and
            3-ketosteroid-5-isomerase
          Length = 3630

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 355  cggcgccctcgccggcgcga 374
            ||||||||||||||||||||
Sbjct: 3137 cggcgccctcgccggcgcga 3156


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,748,221
Number of Sequences: 3902068
Number of extensions: 3748221
Number of successful extensions: 82997
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 81684
Number of HSP's gapped (non-prelim): 1313
length of query: 646
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 623
effective length of database: 17,143,297,704
effective search space: 10680274469592
effective search space used: 10680274469592
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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