Clone Information

BLAST Search Result

Clone Name	bags39k09
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	MPPB_ARATH (Q42290) Probable mitochondrial-processing peptidase ...	346	3e-95
2	MPPB_BOVIN (Q3SZ71) Mitochondrial-processing peptidase beta subu...	199	5e-51
3	MPPB_PONPY (Q5REK3) Mitochondrial-processing peptidase beta subu...	199	6e-51
4	MPPB_HUMAN (O75439) Mitochondrial-processing peptidase beta subu...	196	5e-50
5	MPPB_RAT (Q03346) Mitochondrial-processing peptidase beta subuni...	191	1e-48
6	MPPB_MOUSE (Q9CXT8) Mitochondrial-processing peptidase beta subu...	190	4e-48
7	MPPB_NEUCR (P11913) Mitochondrial-processing peptidase beta subu...	188	1e-47
8	MPPB_LENED (Q9Y8B5) Mitochondrial-processing peptidase beta subu...	176	8e-44
9	MPPB_SCHPO (Q9P7X1) Probable mitochondrial-processing peptidase ...	162	9e-40
10	MPPB_BLAEM (Q00302) Mitochondrial-processing peptidase beta subu...	160	3e-39
11	UQCR1_MOUSE (Q9CZ13) Ubiquinol-cytochrome-c reductase complex co...	156	5e-38
12	UQCR1_BOVIN (P31800) Ubiquinol-cytochrome-c reductase complex co...	155	8e-38
13	UQCR1_HUMAN (P31930) Ubiquinol-cytochrome-c reductase complex co...	152	7e-37
14	MPPB_YEAST (P10507) Mitochondrial-processing peptidase beta subu...	133	6e-31
15	YMT1_CAEEL (P98080) Hypothetical protein F56D2.1 in chromosome III	112	1e-24
16	UQCR1_EUGGR (P43264) Ubiquinol-cytochrome-c reductase complex co...	110	3e-24
17	UQCR1_YEAST (P07256) Ubiquinol-cytochrome-c reductase complex co...	106	6e-23
18	MPPA_SCHPO (O94745) Probable mitochondrial-processing peptidase ...	96	8e-20
19	MPPA_YEAST (P11914) Mitochondrial-processing peptidase alpha sub...	92	1e-18
20	Y5738_STRCO (O86835) Hypothetical zinc protease SCO5738 (EC 3.4....	87	5e-17
21	Y293_RICCN (Q92IX7) Hypothetical zinc protease RC0293 (EC 3.4.99.-)	87	5e-17
22	Y219_RICPR (O05945) Hypothetical zinc protease RP219 (EC 3.4.99.-)	82	1e-15
23	MPPA_BLAEM (P97997) Mitochondrial-processing peptidase alpha sub...	77	6e-14
24	MPPA2_ARATH (O04308) Probable mitochondrial-processing peptidase...	75	2e-13
25	MPPA_SOLTU (P29677) Mitochondrial-processing peptidase alpha sub...	75	2e-13
26	MPPA1_ARATH (Q9ZU25) Probable mitochondrial-processing peptidase...	73	9e-13
27	MPPA_MOUSE (Q9DC61) Mitochondrial-processing peptidase alpha sub...	70	8e-12
28	MPPA_PONPY (Q5R513) Mitochondrial-processing peptidase alpha sub...	69	1e-11
29	MPPA_HUMAN (Q10713) Mitochondrial-processing peptidase alpha sub...	69	2e-11
30	UQCR2_RAT (P32551) Ubiquinol-cytochrome-c reductase complex core...	68	3e-11
31	UQCR2_BOVIN (P23004) Ubiquinol-cytochrome-c reductase complex co...	67	5e-11
32	UQCR2_MOUSE (Q9DB77) Ubiquinol-cytochrome-c reductase complex co...	67	6e-11
33	UQCR2_HUMAN (P22695) Ubiquinol-cytochrome-c reductase complex co...	66	8e-11
34	YMXG_BACSU (Q04805) Hypothetical zinc protease ymxG (EC 3.4.99.-...	65	1e-10
35	MPPA_NEUCR (P23955) Mitochondrial-processing peptidase alpha sub...	64	3e-10
36	Y855_MYCLE (O32965) Hypothetical zinc protease ML0855 (EC 3.4.99.-)	64	4e-10
37	Y2805_MYCBO (P0A5S9) Hypothetical zinc protease Mb2805c (EC 3.4....	62	2e-09
38	Y2782_MYCTU (P0A5S8) Hypothetical zinc protease Rv2782c/MT2852 (...	62	2e-09
39	MPPA_RAT (P20069) Mitochondrial-processing peptidase alpha subun...	60	5e-09
40	Y4WB_RHISN (P55680) Hypothetical zinc protease-like protein y4wB	43	8e-04
41	YP183_YEAST (Q08924) WD-repeat protein YPL183C	32	1.8
42	YPD1_CAEEL (P48053) Hypothetical protein C05D11.1 in chromosome III	31	4.0
43	C4BP_HUMAN (P04003) C4b-binding protein alpha chain precursor (C...	30	5.2
44	FIMD_SALTY (P37924) Outer membrane usher protein fimD precursor	30	6.7
45	GATE_THEVO (Q979L9) Glutamyl-tRNA(Gln) amidotransferase subunit ...	30	6.7
46	DJLA_HAEIN (P44607) DnaJ-like protein djlA	30	6.7
47	CRBB2_CHICK (Q05714) Beta crystallin B2 (BP)	30	8.8
48	CO6A1_MOUSE (Q04857) Collagen alpha-1(VI) chain precursor	30	8.8
49	NEO1_MOUSE (P97798) Neogenin precursor	30	8.8
50	LEU1_CORGL (P42455) 2-isopropylmalate synthase (EC 2.3.3.13) (Al...	30	8.8

>MPPB_ARATH (Q42290) Probable mitochondrial-processing peptidase beta subunit,|
           mitochondrial precursor (EC 3.4.24.64) (Beta-MPP)
          Length = 531

 Score =  346 bits (888), Expect = 3e-95
 Identities = 168/219 (76%), Positives = 197/219 (89%)
 Frame = +3

Query: 21  ATAFQYTSLGRPILGSADNVKSITKKDLVDYIQNHYTASRMVITAAGAVKHDDIVQQAKE 200
           ATAFQYT LGR ILG A NVKSIT++DL +YI+ HYTASRMVI AAGAVKH+++V+Q K+
Sbjct: 239 ATAFQYTPLGRTILGPAQNVKSITREDLQNYIKTHYTASRMVIAAAGAVKHEEVVEQVKK 298

Query: 201 LFKTLPTDPTTTNMLVAKQPAIFTGSEVRIIDDDMPLAQFAVAFNGASWTDPDSIALMVM 380
           LF  L +DPTTT+ LVA +PA FTGSEVR+IDDD+PLAQFAVAF GASWTDPDS+ALMVM
Sbjct: 299 LFTKLSSDPTTTSQLVANEPASFTGSEVRMIDDDLPLAQFAVAFEGASWTDPDSVALMVM 358

Query: 381 QTMLGSWNKSAGGGKHMGSELVQRVAINDIAESIMAFNTNYKDTGLFGVYAVAKPDCLDD 560
           QTMLGSWNK+ GGGKH+GS+L QRVAIN+IAESIMAFNTNYKDTGLFGVYAVAK DCLDD
Sbjct: 359 QTMLGSWNKNVGGGKHVGSDLTQRVAINEIAESIMAFNTNYKDTGLFGVYAVAKADCLDD 418

Query: 561 LAFAIMQEMSKLSYRVTEEDVIRARNQLKSSIQLHLDGS 677
           L++AIM E++KL+YRV++ DV RARNQLKSS+ LH+DG+
Sbjct: 419 LSYAIMYEVTKLAYRVSDADVTRARNQLKSSLLLHMDGT 457

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>MPPB_BOVIN (Q3SZ71) Mitochondrial-processing peptidase beta subunit,|
           mitochondrial precursor (EC 3.4.24.64) (Beta-MPP)
          Length = 490

 Score =  199 bits (507), Expect = 5e-51
 Identities = 100/219 (45%), Positives = 141/219 (64%)
 Frame = +3

Query: 21  ATAFQYTSLGRPILGSADNVKSITKKDLVDYIQNHYTASRMVITAAGAVKHDDIVQQAKE 200
           ATA+Q T+LGR ILG  +N+KSI +KDLVDYI  HY   R+V+ AAG V HD++++ AK 
Sbjct: 200 ATAYQNTALGRTILGPTENIKSINRKDLVDYITTHYKGPRIVLAAAGGVSHDELLELAK- 258

Query: 201 LFKTLPTDPTTTNMLVAKQPAIFTGSEVRIIDDDMPLAQFAVAFNGASWTDPDSIALMVM 380
            F    +  T    + A  P  FTGSE+R+ DD MPLA  AVA     W  PD+I LMV 
Sbjct: 259 -FHFGESLSTHKGEIPALPPCKFTGSEIRVRDDKMPLAHLAVAVEAVGWAHPDTICLMVA 317

Query: 381 QTMLGSWNKSAGGGKHMGSELVQRVAINDIAESIMAFNTNYKDTGLFGVYAVAKPDCLDD 560
            T++G+W++S GGG ++ S+L Q     ++  S  +FNT+Y DTGL+G+Y V +P  + D
Sbjct: 318 NTLIGNWDRSFGGGMNLSSKLAQLTCHGNLCHSFQSFNTSYTDTGLWGIYMVCEPATVAD 377

Query: 561 LAFAIMQEMSKLSYRVTEEDVIRARNQLKSSIQLHLDGS 677
           +   + +E  +L   VTE +V RA+N LK+++ L LDGS
Sbjct: 378 MLHVVQKEWMRLCTSVTESEVARAKNLLKTNMLLQLDGS 416

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>MPPB_PONPY (Q5REK3) Mitochondrial-processing peptidase beta subunit,|
           mitochondrial precursor (EC 3.4.24.64) (Beta-MPP)
          Length = 489

 Score =  199 bits (506), Expect = 6e-51
 Identities = 100/219 (45%), Positives = 141/219 (64%)
 Frame = +3

Query: 21  ATAFQYTSLGRPILGSADNVKSITKKDLVDYIQNHYTASRMVITAAGAVKHDDIVQQAKE 200
           ATA+Q T+LGR ILG  +N+KSI++KDLVDYI  HY   R+V+ AAG V HD+++  AK 
Sbjct: 199 ATAYQNTALGRTILGPTENIKSISRKDLVDYITTHYKGPRIVLAAAGGVSHDELLDLAK- 257

Query: 201 LFKTLPTDPTTTNMLVAKQPAIFTGSEVRIIDDDMPLAQFAVAFNGASWTDPDSIALMVM 380
            F    +  T    + A  P  FTGSE+R+ DD MPLA  A+A     W  PD+I LMV 
Sbjct: 258 -FHFGDSLCTHKGEIPALPPCKFTGSEIRVRDDKMPLAHLAIAVEAVGWAHPDTICLMVA 316

Query: 381 QTMLGSWNKSAGGGKHMGSELVQRVAINDIAESIMAFNTNYKDTGLFGVYAVAKPDCLDD 560
            T++G+W++S GGG ++ S+L Q     ++  S  +FNT+Y DTGL+G+Y V +P  + D
Sbjct: 317 NTLIGNWDRSFGGGMNLSSKLAQLTCHGNLCHSFQSFNTSYTDTGLWGLYMVCEPSTVAD 376

Query: 561 LAFAIMQEMSKLSYRVTEEDVIRARNQLKSSIQLHLDGS 677
           +   + +E  +L   VTE +V RARN LK+++ L LDGS
Sbjct: 377 MLHVVQKEWMRLCTSVTESEVARARNLLKTNMLLQLDGS 415

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>MPPB_HUMAN (O75439) Mitochondrial-processing peptidase beta subunit,|
           mitochondrial precursor (EC 3.4.24.64) (Beta-MPP) (P-52)
          Length = 489

 Score =  196 bits (498), Expect = 5e-50
 Identities = 99/219 (45%), Positives = 140/219 (63%)
 Frame = +3

Query: 21  ATAFQYTSLGRPILGSADNVKSITKKDLVDYIQNHYTASRMVITAAGAVKHDDIVQQAKE 200
           ATA+Q T+LGR ILG  +N+KSI++KDLVDYI  HY   R+V+ AAG V HD+++  AK 
Sbjct: 199 ATAYQNTALGRTILGPTENIKSISRKDLVDYITTHYKGPRIVLAAAGGVSHDELLDLAK- 257

Query: 201 LFKTLPTDPTTTNMLVAKQPAIFTGSEVRIIDDDMPLAQFAVAFNGASWTDPDSIALMVM 380
            F    +  T    + A  P  FTGSE+R+ DD MPLA  A+A     W  PD+I LMV 
Sbjct: 258 -FHFGDSLCTHKGEIPALPPCKFTGSEIRVRDDKMPLAHLAIAVEAVGWAHPDTICLMVA 316

Query: 381 QTMLGSWNKSAGGGKHMGSELVQRVAINDIAESIMAFNTNYKDTGLFGVYAVAKPDCLDD 560
            T++G+W++S GGG ++ S+L Q     ++  S  +FNT+Y DTGL+G+Y V +   + D
Sbjct: 317 NTLIGNWDRSFGGGMNLSSKLAQLTCHGNLCHSFQSFNTSYTDTGLWGLYMVCESSTVAD 376

Query: 561 LAFAIMQEMSKLSYRVTEEDVIRARNQLKSSIQLHLDGS 677
           +   + +E  +L   VTE +V RARN LK+++ L LDGS
Sbjct: 377 MLHVVQKEWMRLCTSVTESEVARARNLLKTNMLLQLDGS 415

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>MPPB_RAT (Q03346) Mitochondrial-processing peptidase beta subunit,|
           mitochondrial precursor (EC 3.4.24.64) (Beta-MPP) (P-52)
          Length = 489

 Score =  191 bits (486), Expect = 1e-48
 Identities = 99/221 (44%), Positives = 143/221 (64%), Gaps = 2/221 (0%)
 Frame = +3

Query: 21  ATAFQYTSLGRPILGSADNVKSITKKDLVDYIQNHYTASRMVITAAGAVKHDDIVQQAKE 200
           ATA+Q T+LGR ILG  +N+KSI++KDLVDYI  HY   R+V+ AAG V H+++++ AK 
Sbjct: 199 ATAYQNTALGRTILGPTENIKSISRKDLVDYITTHYKGPRIVLAAAGGVCHNELLELAKF 258

Query: 201 LFKTLPTDPTTTNM--LVAKQPAIFTGSEVRIIDDDMPLAQFAVAFNGASWTDPDSIALM 374
            F     D    +   + A  P  FTGSE+R+ DD MPLA  AVA     WT PD+I LM
Sbjct: 259 HFG----DSLCAHKGDVPALPPCKFTGSEIRVRDDKMPLAHLAVAIEAVGWTHPDTIRLM 314

Query: 375 VMQTMLGSWNKSAGGGKHMGSELVQRVAINDIAESIMAFNTNYKDTGLFGVYAVAKPDCL 554
           V  T++G+W++S GGG ++ S+L Q     ++  S  +FNT+Y DTGL+G+Y V +   +
Sbjct: 315 VANTLIGNWDRSFGGGMNLSSKLAQLTCHGNLCHSFQSFNTSYTDTGLWGLYMVCEQATV 374

Query: 555 DDLAFAIMQEMSKLSYRVTEEDVIRARNQLKSSIQLHLDGS 677
            D+  A+ +E  +L   V+E +V RA+N LK+++ L LDGS
Sbjct: 375 ADMLHAVQKEWMRLCTAVSESEVARAKNLLKTNMLLQLDGS 415

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>MPPB_MOUSE (Q9CXT8) Mitochondrial-processing peptidase beta subunit,|
           mitochondrial precursor (EC 3.4.24.64) (Beta-MPP) (P-52)
          Length = 489

 Score =  190 bits (482), Expect = 4e-48
 Identities = 96/219 (43%), Positives = 139/219 (63%)
 Frame = +3

Query: 21  ATAFQYTSLGRPILGSADNVKSITKKDLVDYIQNHYTASRMVITAAGAVKHDDIVQQAKE 200
           ATA+Q T+LGR ILG  +N+KSI +KDLVDYI  HY   R+V+ AAG V H+++++ AK 
Sbjct: 199 ATAYQNTALGRTILGPTENIKSINRKDLVDYITTHYKGPRIVLAAAGGVCHNELLELAK- 257

Query: 201 LFKTLPTDPTTTNMLVAKQPAIFTGSEVRIIDDDMPLAQFAVAFNGASWTDPDSIALMVM 380
            F    +  +    + A  P  FTGSE+R+ DD MPLA  A+A     W  PD+I LMV 
Sbjct: 258 -FHFGDSLCSHKGAIPALPPCKFTGSEIRVRDDKMPLAHLAIAVEAVGWAHPDTICLMVA 316

Query: 381 QTMLGSWNKSAGGGKHMGSELVQRVAINDIAESIMAFNTNYKDTGLFGVYAVAKPDCLDD 560
            T++G+W++S GGG ++ S+L Q     ++  S  +FNT+Y DTGL+G+Y V +   + D
Sbjct: 317 NTLIGNWDRSFGGGMNLSSKLAQLTCHGNLCHSFQSFNTSYTDTGLWGLYMVCEQATVAD 376

Query: 561 LAFAIMQEMSKLSYRVTEEDVIRARNQLKSSIQLHLDGS 677
           +   +  E  +L   VTE +V RA+N LK+++ L LDGS
Sbjct: 377 MLHVVQNEWKRLCTDVTESEVARAKNLLKTNMLLQLDGS 415

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>MPPB_NEUCR (P11913) Mitochondrial-processing peptidase beta subunit,|
           mitochondrial precursor (EC 3.4.24.64) (Beta-MPP)
           (Ubiquinol-cytochrome-c reductase complex core protein
           I) (EC 1.10.2.2)
          Length = 476

 Score =  188 bits (477), Expect = 1e-47
 Identities = 97/221 (43%), Positives = 148/221 (66%), Gaps = 2/221 (0%)
 Frame = +3

Query: 21  ATAFQYTSLGRPILGSADNVKSITKKDLVDYIQNHYTASRMVITAAGAVKHDDIVQQAKE 200
           ATA+Q+  LGR ILG  +N++ IT+ +LV+YI+N+YTA RMV+  AG V H+ +V+ A +
Sbjct: 182 ATAYQHQPLGRTILGPRENIRDITRTELVNYIKNNYTADRMVLVGAGGVPHEQLVEMADK 241

Query: 201 LFKTLP-TDPTTTNMLVAKQPAIFTGSEVRIIDDDMPLAQFAVAFNGASWTDPDSIALMV 377
            F  LP T P ++  +++K+   F GS++RI DD +P A  A+A  G SW+D D    +V
Sbjct: 242 YFSKLPATAPVSSASILSKKKPDFIGSDIRIRDDTIPTANIAIAVEGVSWSDDDYFTGLV 301

Query: 378 MQTMLGSWNKSAGGGKHMGSELVQRVAINDIAESIMAFNTNYKDTGLFGVYAVA-KPDCL 554
            Q ++G+++K+ G   H GS+L   V  +D+A S M+F+T+Y DTGL+G+Y V  K D +
Sbjct: 302 TQAIVGNYDKALGNAPHQGSKLSGFVHKHDLATSFMSFSTSYSDTGLWGIYLVTDKLDRV 361

Query: 555 DDLAFAIMQEMSKLSYRVTEEDVIRARNQLKSSIQLHLDGS 677
           DDL    ++E ++L   V+E +V RA+ QLK+SI L LDG+
Sbjct: 362 DDLVHFSLREWTRLCSNVSEAEVERAKAQLKASILLSLDGT 402

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>MPPB_LENED (Q9Y8B5) Mitochondrial-processing peptidase beta subunit,|
           mitochondrial precursor (EC 3.4.24.64) (Beta-MPP)
          Length = 466

 Score =  176 bits (445), Expect = 8e-44
 Identities = 91/222 (40%), Positives = 137/222 (61%), Gaps = 3/222 (1%)
 Frame = +3

Query: 21  ATAFQYTSLGRPILGSADNVKSITKKDLVDYIQNHYTASRMVITAAGAVKHDDIVQQAKE 200
           A AFQ   LGR ILG  +N+ SI + DL  YIQ +YTA RMV+   G V H  +V+ A++
Sbjct: 171 AVAFQGQPLGRTILGPKNNILSIQRDDLASYIQTNYTADRMVLVGTGGVDHQSLVKLAEK 230

Query: 201 LFKTLPT--DPTTTNMLVAKQPAIFTGSEVRIIDDDMPLAQFAVAFNGASWTDPDSIALM 374
            F +LP   +P     L +++   F GSE RI DD++P A  A+A  G  W+ PD   +M
Sbjct: 231 HFSSLPVSANPLALGRLSSERKPTFVGSEARIRDDELPTAHVAIAVEGVGWSSPDYFPMM 290

Query: 375 VMQTMLGSWNKSAGGGKHMGSELVQRVAINDIAESIMAFNTNYKDTGLFGVYAVAKPDC- 551
           VMQ++ G+W++S G    + S L   ++ N +A S M+F+T+Y DTGL+G+Y V++    
Sbjct: 291 VMQSIFGNWDRSLGASSLLSSRLSHIISSNSLANSFMSFSTSYSDTGLWGIYLVSENLMN 350

Query: 552 LDDLAFAIMQEMSKLSYRVTEEDVIRARNQLKSSIQLHLDGS 677
           LDD     ++E +++S   TE +V RA++QLK+ + L LDG+
Sbjct: 351 LDDTLHFTLKEWTRMSIAPTEGEVERAKSQLKAGLLLSLDGT 392

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>MPPB_SCHPO (Q9P7X1) Probable mitochondrial-processing peptidase beta subunit,|
           mitochondrial precursor (EC 3.4.24.64) (Beta-MPP) (PEP)
          Length = 457

 Score =  162 bits (410), Expect = 9e-40
 Identities = 84/223 (37%), Positives = 141/223 (63%), Gaps = 4/223 (1%)
 Frame = +3

Query: 21  ATAFQYTSLGRPILGSADNVKSITKKDLVDYIQNHYTASRMVITAAGAVKHDDIVQQAKE 200
           ATA+Q   LGR ILG  +N++S+T++DL+ YI+++Y + RM+I++AG++ H+++V+ A++
Sbjct: 164 ATAYQGHPLGRTILGPKENIESLTREDLLQYIKDNYRSDRMIISSAGSISHEELVKLAEK 223

Query: 201 LFKTLPTDPTTTNMLVAKQPAI---FTGSEVRIIDDDMPLAQFAVAFNGASWTDPDSIAL 371
            F  L  +P+   + +     +   F GSE+R  DDD P A  A+A  G SW  PD    
Sbjct: 224 YFGHL--EPSAEQLSLGAPRGLKPRFVGSEIRARDDDSPTANIAIAVEGMSWKHPDYFTA 281

Query: 372 MVMQTMLGSWNKSAGGGKHMGSELVQRVAINDIAESIMAFNTNYKDTGLFGVYAVAKP-D 548
           +VMQ ++G+W+++ G   H+ S L   V  + +A S M+F+T+Y DTGL+G+Y V +   
Sbjct: 282 LVMQAIIGNWDRAMGASPHLSSRLSTIVQQHQLANSFMSFSTSYSDTGLWGIYLVTENLG 341

Query: 549 CLDDLAFAIMQEMSKLSYRVTEEDVIRARNQLKSSIQLHLDGS 677
            +DDL    +Q  ++L+   T  +V RA+ QL++S+ L LD +
Sbjct: 342 RIDDLVHFTLQNWARLTV-ATRAEVERAKAQLRASLLLSLDST 383

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>MPPB_BLAEM (Q00302) Mitochondrial-processing peptidase beta subunit,|
           mitochondrial precursor (EC 3.4.24.64) (Beta-MPP)
           (BeMPP1)
          Length = 465

 Score =  160 bits (405), Expect = 3e-39
 Identities = 94/220 (42%), Positives = 137/220 (62%), Gaps = 1/220 (0%)
 Frame = +3

Query: 21  ATAFQYTSLGRPILGSADNVKSITKKDLVDYIQNHYTASRMVITAAGAVKHDDIVQQAKE 200
           A AF   +LG  ILG  +N++++++ DL  YI+N+YTA RMV+  AG V H ++ + A+ 
Sbjct: 177 AAAFPENALGYTILGPKENIQTLSQADLQAYIKNNYTADRMVVVGAGNVDHAELCKLAET 236

Query: 201 LFKTLPTDPTTTNMLVAKQPAIFTGSEVRIIDDDMPLAQFAVAFNGASWTDPDSIALMVM 380
            F  LP        +   +PA FTGS+VRI  DDMP A  A+A  GASWT  D   L+V 
Sbjct: 237 NFGKLPQGSGKAKFV---RPA-FTGSDVRIRVDDMPTAHIALAVEGASWTSADHWPLLVA 292

Query: 381 QTMLGSWNKSAGGGKHMGSELVQRVAINDIAESIMAFNTNYKDTGLFGVYAVA-KPDCLD 557
             M+GS++++AG   H  S+L Q VA +++A S  +FNT Y DTGL+G+Y  +   D LD
Sbjct: 293 SAMIGSYDRAAGNA-HPSSKLAQIVAKHNLANSFTSFNTTYSDTGLWGIYIQSNNRDNLD 351

Query: 558 DLAFAIMQEMSKLSYRVTEEDVIRARNQLKSSIQLHLDGS 677
           DLA   ++E  +L+   +E +V  A+ QLK+S+ L LDG+
Sbjct: 352 DLAHFTVREWMRLATAPSEGEVAIAKQQLKTSLLLALDGT 391

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>UQCR1_MOUSE (Q9CZ13) Ubiquinol-cytochrome-c reductase complex core protein I,|
           mitochondrial precursor (EC 1.10.2.2)
          Length = 480

 Score =  156 bits (395), Expect = 5e-38
 Identities = 77/219 (35%), Positives = 126/219 (57%)
 Frame = +3

Query: 21  ATAFQYTSLGRPILGSADNVKSITKKDLVDYIQNHYTASRMVITAAGAVKHDDIVQQAKE 200
           ATAFQ T L + + G ++NV+ +++ DL DY+  +Y A RMV+ AAG V+H  ++  A++
Sbjct: 189 ATAFQGTPLAQAVEGPSENVRRLSRTDLTDYLNRNYKAPRMVLAAAGGVEHQQLLDLAQK 248

Query: 201 LFKTLPTDPTTTNMLVAKQPAIFTGSEVRIIDDDMPLAQFAVAFNGASWTDPDSIALMVM 380
              ++ +     + +    P  FTGSE+R  DD +PLA  A+A  G  W +PD++ L V 
Sbjct: 249 HLSSV-SRVYEEDAVPGLTPCRFTGSEIRHRDDALPLAHVAIAVEGPGWANPDNVTLQVA 307

Query: 381 QTMLGSWNKSAGGGKHMGSELVQRVAINDIAESIMAFNTNYKDTGLFGVYAVAKPDCLDD 560
             ++G ++ + GGG H+ S L      N + +S   FN +Y DTGL G + V     +DD
Sbjct: 308 NAIIGHYDCTCGGGVHLSSPLASVAVANKLCQSFQTFNISYSDTGLLGAHFVCDAMSIDD 367

Query: 561 LAFAIMQEMSKLSYRVTEEDVIRARNQLKSSIQLHLDGS 677
           + F +  +  +L    TE +V R +N L++++  HLDG+
Sbjct: 368 MVFFLQGQWMRLCTSATESEVTRGKNILRNALVSHLDGT 406

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>UQCR1_BOVIN (P31800) Ubiquinol-cytochrome-c reductase complex core protein I,|
           mitochondrial precursor (EC 1.10.2.2)
          Length = 480

 Score =  155 bits (393), Expect = 8e-38
 Identities = 77/219 (35%), Positives = 126/219 (57%)
 Frame = +3

Query: 21  ATAFQYTSLGRPILGSADNVKSITKKDLVDYIQNHYTASRMVITAAGAVKHDDIVQQAKE 200
           ATAFQ T L + + G ++NV+ +++ DL +Y+  HY A RMV+ AAG ++H  ++  A++
Sbjct: 189 ATAFQGTPLAQSVEGPSENVRKLSRADLTEYLSRHYKAPRMVLAAAGGLEHRQLLDLAQK 248

Query: 201 LFKTLPTDPTTTNMLVAKQPAIFTGSEVRIIDDDMPLAQFAVAFNGASWTDPDSIALMVM 380
            F  L +     + +    P  FTGS++   +D +PLA  A+A  G  W  PD++AL V 
Sbjct: 249 HFSGL-SGTYDEDAVPTLSPCRFTGSQICHREDGLPLAHVAIAVEGPGWAHPDNVALQVA 307

Query: 381 QTMLGSWNKSAGGGKHMGSELVQRVAINDIAESIMAFNTNYKDTGLFGVYAVAKPDCLDD 560
             ++G ++ + GGG H+ S L    A N + +S   FN  Y DTGL G + V     +DD
Sbjct: 308 NAIIGHYDCTYGGGAHLSSPLASIAATNKLCQSFQTFNICYADTGLLGAHFVCDHMSIDD 367

Query: 561 LAFAIMQEMSKLSYRVTEEDVIRARNQLKSSIQLHLDGS 677
           + F +  +  +L    TE +V+R +N L++++  HLDG+
Sbjct: 368 MMFVLQGQWMRLCTSATESEVLRGKNLLRNALVSHLDGT 406

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>UQCR1_HUMAN (P31930) Ubiquinol-cytochrome-c reductase complex core protein I,|
           mitochondrial precursor (EC 1.10.2.2)
          Length = 480

 Score =  152 bits (385), Expect = 7e-37
 Identities = 76/219 (34%), Positives = 123/219 (56%)
 Frame = +3

Query: 21  ATAFQYTSLGRPILGSADNVKSITKKDLVDYIQNHYTASRMVITAAGAVKHDDIVQQAKE 200
           ATAFQ T L + + G ++NV+ +++ DL +Y+  HY A RMV+ AAG V+H  ++  A++
Sbjct: 189 ATAFQGTPLAQAVEGPSENVRKLSRADLTEYLSTHYKAPRMVLAAAGGVEHQQLLDLAQK 248

Query: 201 LFKTLPTDPTTTNMLVAKQPAIFTGSEVRIIDDDMPLAQFAVAFNGASWTDPDSIALMVM 380
               +P      + +    P  FTGSE+R  DD +P A  A+A  G  W  PD++AL V 
Sbjct: 249 HLGGIPWT-YAEDAVPTLTPCRFTGSEIRHRDDALPFAHVAIAVEGPGWASPDNVALQVA 307

Query: 381 QTMLGSWNKSAGGGKHMGSELVQRVAINDIAESIMAFNTNYKDTGLFGVYAVAKPDCLDD 560
             ++G ++ + GGG H+ S L      N + +S   F+  Y +TGL G + V     +DD
Sbjct: 308 NAIIGHYDCTYGGGVHLSSPLASGAVANKLCQSFQTFSICYAETGLLGAHFVCDRMKIDD 367

Query: 561 LAFAIMQEMSKLSYRVTEEDVIRARNQLKSSIQLHLDGS 677
           + F +  +  +L    TE +V R +N L++++  HLDG+
Sbjct: 368 MMFVLQGQWMRLCTSATESEVARGKNILRNALVSHLDGT 406

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>MPPB_YEAST (P10507) Mitochondrial-processing peptidase beta subunit,|
           mitochondrial precursor (EC 3.4.24.64) (Beta-MPP) (PEP)
          Length = 462

 Score =  133 bits (334), Expect = 6e-31
 Identities = 76/216 (35%), Positives = 126/216 (58%), Gaps = 5/216 (2%)
 Frame = +3

Query: 45  LGRPILGSADNVKSITKKDLVDYIQNHYTASRMVITAAGAVKHDDIVQQAKELFKTLPTD 224
           LGR ILG   N+KSIT+ DL DYI  +Y   RMV+  AGAV H+ +VQ A++ F  +P  
Sbjct: 176 LGRTILGPIKNIKSITRTDLKDYITKNYKGDRMVLAGAGAVDHEKLVQYAQKYFGHVPKS 235

Query: 225 PTTTNMLVAKQP-AIFTGSEVRIIDDDMPLAQFAVAFNGASWTDPDSIALMVMQTMLGSW 401
            +   +   + P  +F   E  I ++ +P    A+A  G SW+ PD    +  Q ++G+W
Sbjct: 236 ESPVPLGSPRGPLPVFCRGERFIKENTLPTTHIAIALEGVSWSAPDYFVALATQAIVGNW 295

Query: 402 NKSAGGGKHMGSELVQRVAIN-DIAESIMAFNTNYKDTGLFGVYAV--AKPDCLDDLAFA 572
           +++ G G +  S L    + N  +A S M+F+T+Y D+GL+G+Y V  +    +  +   
Sbjct: 296 DRAIGTGTNSPSPLAVAASQNGSLANSYMSFSTSYADSGLWGMYIVTDSNEHNVQLIVNE 355

Query: 573 IMQEMSKL-SYRVTEEDVIRARNQLKSSIQLHLDGS 677
           I++E  ++ S ++++ +V RA+ QLK+++ L LDGS
Sbjct: 356 ILKEWKRIKSGKISDAEVNRAKAQLKAALLLSLDGS 391

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>YMT1_CAEEL (P98080) Hypothetical protein F56D2.1 in chromosome III|
          Length = 471

 Score =  112 bits (279), Expect = 1e-24
 Identities = 69/230 (30%), Positives = 120/230 (52%), Gaps = 7/230 (3%)
 Frame = +3

Query: 3   LYSXSPATAFQYTSLGRPILGSADNVKSITKKDLVDYIQNHYTASRMVITAAGAVKHDDI 182
           L+    A  FQ T L   +LG+++++ +I+ + L ++ ++HY   RMV++A G     ++
Sbjct: 173 LFDMLHAAGFQGTPLALSVLGTSESIPNISAQQLKEWQEDHYRPVRMVLSAVGGGV-SNV 231

Query: 183 VQQAKELFKTLPTDPTTTNMLVAKQPAI----FTGSEVRIIDDDMPLAQFAVAFNGASWT 350
              A + F  L      +N    K P +    FTGSE R  +D++P    A A  G  + 
Sbjct: 232 SSLADKYFGDL------SNEYPRKVPQVDGTRFTGSEYRYRNDNVPHMYAAFAVEGVGYA 285

Query: 351 DPDSIALMVMQTMLGSWNKSAGGGKHMGSELVQRVAINDIAESIMAFNTNYKDTGLFGVY 530
             D++AL +    +G W+ +    +   S LVQ++  +    ++  FN NYKDTGLFG+Y
Sbjct: 286 HKDALALQIANQFIGQWDVTHATSRTAASRLVQKIGHDHGVHNLQHFNINYKDTGLFGIY 345

Query: 531 AVAKPDCLDD---LAFAIMQEMSKLSYRVTEEDVIRARNQLKSSIQLHLD 671
            VA    L+D   +  ++  E   L+   TEE+V  A+NQ ++++  +L+
Sbjct: 346 FVADAHDLNDTSGIMKSVAHEWKHLASAATEEEVAMAKNQFRTNLYQNLE 395

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>UQCR1_EUGGR (P43264) Ubiquinol-cytochrome-c reductase complex core protein I,|
           mitochondrial precursor (EC 1.10.2.2)
          Length = 494

 Score =  110 bits (276), Expect = 3e-24
 Identities = 74/240 (30%), Positives = 118/240 (49%), Gaps = 21/240 (8%)
 Frame = +3

Query: 21  ATAFQYTSLGRPILGSADNV-KSITKKDLVDYIQNHYTASRMVITAAGAVKHDDIVQQAK 197
           + AF+ + LG  ILG  +N+ KSITK  + D+++ HYT  RM +  +GAV H  +   A 
Sbjct: 168 SAAFEGSGLGLSILGPLENIQKSITKGMIDDFVKTHYTGPRMALVGSGAVDHGQLCDLAS 227

Query: 198 ELFKTLPTDPTTTNMLVAKQPAIFTGSEVRIIDDDMPLAQFAVAFNGASWTDPDSIALMV 377
           + F  LPT     +         F G + R  +   PL   AVAF     + PD+I + V
Sbjct: 228 KYFGALPTGQPKPSGFTR-----FLGGDKRETNQLNPLTHVAVAFQTPGISHPDAIKIKV 282

Query: 378 MQTMLGSWNKSAGGGKH---------------MGSELVQRVAINDIAESIMAFNTNYKDT 512
           ++ +LGS+++  G   +               +G       A ++   S+ AF   Y D 
Sbjct: 283 LEQLLGSYSRDKGEAAYSCFARAIVMDFYDPKVGQFFRPNKAGHNPIHSLNAFWAPYSDV 342

Query: 513 GLFGVYAVAKPDC-----LDDLAFAIMQEMSKLSYRVTEEDVIRARNQLKSSIQLHLDGS 677
           GL G YA+A+P        +++    M+E+ ++S  ++EE+  RA+NQLK    L LDG+
Sbjct: 343 GLLGFYAIAEPGKSYGHEWENILHYAMRELIRVSRNISEEEFERAKNQLKLQTMLQLDGT 402

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>UQCR1_YEAST (P07256) Ubiquinol-cytochrome-c reductase complex core protein I,|
           mitochondrial precursor (EC 1.10.2.2)
          Length = 457

 Score =  106 bits (265), Expect = 6e-23
 Identities = 66/223 (29%), Positives = 116/223 (52%), Gaps = 4/223 (1%)
 Frame = +3

Query: 21  ATAFQYTSLGRPILGSADNVKSITKKDLVDYIQNHYTASRMVITAAGAVKHDDIVQ--QA 194
           +TAFQ T L  P  G+ ++++++   DL  +  NH+  S  V+   G +KH+D+V   ++
Sbjct: 166 STAFQNTPLSLPTRGTLESLENLVVADLESFANNHFLNSNAVVVGTGNIKHEDLVNSIES 225

Query: 195 KELFKTLPTDPTTTNMLVAKQPAIFTGSEVRIIDDDMPLAQFAVAFNGASWTDPDSIALM 374
           K L     T P      V K+ A F GSEVR+ DD +P A  ++A  G     P+     
Sbjct: 226 KNLSLQTGTKP------VLKKKAAFLGSEVRLRDDTLPKAWISLAVEGEPVNSPNYFVAK 279

Query: 375 VMQTMLGSWNKSAGGGKHMGSELVQRVAINDIAESIMAFNTNYKDTGLFGV-YAVAKPDC 551
           +   + GS+N      +  G +L+  +    + ++   F+ +YKD+GL+G   A      
Sbjct: 280 LAAQIFGSYNAFEPASRLQGIKLLDNIQEYQLCDNFNHFSLSYKDSGLWGFSTATRNVTM 339

Query: 552 LDDLAFAIMQEMSKLSYRVTEEDVIRARNQLKSSI-QLHLDGS 677
           +DDL    +++ ++L+  VT+ +V RA++ LK  + QL+  G+
Sbjct: 340 IDDLIHFTLKQWNRLTISVTDTEVERAKSLLKLQLGQLYESGN 382

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>MPPA_SCHPO (O94745) Probable mitochondrial-processing peptidase alpha subunit,|
           mitochondrial precursor (EC 3.4.24.64) (Alpha-MPP)
          Length = 494

 Score = 96.3 bits (238), Expect = 8e-20
 Identities = 74/227 (32%), Positives = 112/227 (49%), Gaps = 11/227 (4%)
 Frame = +3

Query: 24  TAFQYTSLGRPILGSADNVKSITKKDLVDYIQNHYTASRMVITAAGAVKHDDIVQQAKEL 203
           TAFQ  +LG  +L + D V  IT   + +Y++  Y    + +  AG +  +   +  KEL
Sbjct: 188 TAFQNNTLGNCLLCTPDKVNGITATSIREYLKYFYRPEHLTLAYAG-IPQEIAKEITKEL 246

Query: 204 FKTLPTDPTTTNMLVAKQPAIFTGSEVRIIDDDMPLAQF-------AVAFNGASWTDPDS 362
           +  LP+        +   P+ +TG  + I   + P   +        +A  G   TDPD 
Sbjct: 247 YGHLPSSSLPPLEAI---PSHYTGGFMGIKKSEAPPVPYQQEFTHVVIAMEGLPVTDPDI 303

Query: 363 IALMVMQTMLGSWNK-SAGG-GKHMGSELVQRVAINDI--AESIMAFNTNYKDTGLFGVY 530
            AL  +Q +LG     SAGG GK M S L   V +N     E+ MAFN +Y D+GLFG++
Sbjct: 304 YALACLQFLLGGGGSFSAGGPGKGMYSRLYLNV-LNQYPWVETCMAFNHSYTDSGLFGMF 362

Query: 531 AVAKPDCLDDLAFAIMQEMSKLSYRVTEEDVIRARNQLKSSIQLHLD 671
                D     A  I++E+      VT E+  RA+NQLKSS+ ++L+
Sbjct: 363 VTILDDAAHLAAPLIIRELCNTVLSVTSEETERAKNQLKSSLLMNLE 409

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>MPPA_YEAST (P11914) Mitochondrial-processing peptidase alpha subunit,|
           mitochondrial precursor (EC 3.4.24.64) (Alpha-MPP)
          Length = 482

 Score = 92.4 bits (228), Expect = 1e-18
 Identities = 76/228 (33%), Positives = 115/228 (50%), Gaps = 13/228 (5%)
 Frame = +3

Query: 27  AFQYTSLGRPILGSADNVKSITKKDLVDYIQNHYTASRMVITAAGAVKHDDIVQQAKELF 206
           A+   +LG P++   + + SI+K  L+DY    YT    V    G V H+    +A EL 
Sbjct: 162 AYSGETLGSPLICPRELIPSISKYYLLDYRNKFYTPENTVAAFVG-VPHE----KALELT 216

Query: 207 KTLPTDPTTTNMLVAKQPAIFTGSEVRI----IDDDMP-LAQFAVAFNGASWTDPDSIAL 371
           +    D  +T+  + K+ A +TG E  I    +  ++P L    + F G     PD  AL
Sbjct: 217 EKYLGDWQSTHPPITKKVAQYTGGESCIPPAPVFGNLPELFHIQIGFEGLPIDHPDIYAL 276

Query: 372 MVMQTMLGSWNK-SAGG-GKHMGSELVQRVAIND--IAESIMAFNTNYKDTGLFGVYAVA 539
             +QT+LG     SAGG GK M S L   V +N     E+ +AFN +Y D+G+FG+    
Sbjct: 277 ATLQTLLGGGGSFSAGGPGKGMYSRLYTHV-LNQYYFVENCVAFNHSYSDSGIFGISLSC 335

Query: 540 KPDCLDDLAFAIMQEM----SKLSYRVTEEDVIRARNQLKSSIQLHLD 671
            P         I Q+M    +    R+TE++V RA+NQLKSS+ ++L+
Sbjct: 336 IPQAAPQAVEVIAQQMYNTFANKDLRLTEDEVSRAKNQLKSSLLMNLE 383

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>Y5738_STRCO (O86835) Hypothetical zinc protease SCO5738 (EC 3.4.99.-)|
          Length = 459

 Score = 87.0 bits (214), Expect = 5e-17
 Identities = 64/221 (28%), Positives = 108/221 (48%), Gaps = 5/221 (2%)
 Frame = +3

Query: 24  TAFQYTSLGRPILGSADNVKSITKKDLVDYIQNHYTASRMVITAAGAVKHDDIVQQAKEL 203
           T F   +LGRP+LG+ D V ++T   +  + + HY  + +V+ AAG V H+ +V+Q +  
Sbjct: 178 TMFGDNALGRPVLGTVDTVNALTADRIRRFYRKHYDPTHLVVAAAGNVDHNKVVRQVRAA 237

Query: 204 FKTLPT--DPTTTNMLV-AKQPAIFTGSEVRIIDDDMPLAQFAVAFNGASWTDPDSIALM 374
           F+      DP    +   A +  +     V +I      A   +   G + TD    A+ 
Sbjct: 238 FEKSGALKDPAAQPLAPRAGRRTVRAAGRVELIGRKTEQAHVILGMPGLARTDERRWAMG 297

Query: 375 VMQTMLGSWNKSAGGGKHMGSELVQRV-AINDIAESIMAFNTNYKDTGLFGVYAVAKPDC 551
           V+ T LG      GG   M S L Q V     +A S+ ++ + + D GLFGVYA  +P  
Sbjct: 298 VLNTALG------GG---MSSRLFQEVREKRGLAYSVYSYTSGFADCGLFGVYAGCRPSQ 348

Query: 552 LDDLAFAIMQEMSKLS-YRVTEEDVIRARNQLKSSIQLHLD 671
           + D+      E+  ++ + +T++++ RA  QL+ S  L L+
Sbjct: 349 VHDVLKICRDELDHVAEHGLTDDEIGRAVGQLQGSTVLGLE 389

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>Y293_RICCN (Q92IX7) Hypothetical zinc protease RC0293 (EC 3.4.99.-)|
          Length = 412

 Score = 87.0 bits (214), Expect = 5e-17
 Identities = 57/207 (27%), Positives = 113/207 (54%), Gaps = 1/207 (0%)
 Frame = +3

Query: 45  LGRPILGSADNVKSITKKDLVDYIQNHYTASRMVITAAGAVKHDDIVQQAKELFKTLPTD 224
           LG+ ILG+A  + + TK+   ++I  +Y A+ + ++ AG + HD IV  A++LF +L   
Sbjct: 155 LGKSILGTAKTLATFTKEHFFNFIDKYYNAANLYLSIAGNIDHDKIVIIAEQLFSSLKQG 214

Query: 225 PTTTNMLVAKQPAIFTGSEVRIIDDDMPLAQFAVAFNGASWTDPDSIALMVMQTMLGSWN 404
             ++ +     PA + G     I+ ++      + F G S+ + + +    + +++    
Sbjct: 215 VKSSFI-----PAKYIGGN-GFINKELEQTSLVLGFEGTSYINLEKLYQTHLLSII---- 264

Query: 405 KSAGGGKHMGSELVQRVAIN-DIAESIMAFNTNYKDTGLFGVYAVAKPDCLDDLAFAIMQ 581
              GGG  M S L Q +     +A ++ ++N+ Y D+G+F +YA    D L+ L   I  
Sbjct: 265 --FGGG--MSSRLFQSIREKLGLAYAVGSYNSAYFDSGVFTIYASTAHDKLELLYKEIKN 320

Query: 582 EMSKLSYRVTEEDVIRARNQLKSSIQL 662
           E+ K++ +V+ E+++RA+ QL+S++Q+
Sbjct: 321 EIIKMTEQVSTEEILRAKTQLRSNLQM 347

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>Y219_RICPR (O05945) Hypothetical zinc protease RP219 (EC 3.4.99.-)|
          Length = 412

 Score = 82.0 bits (201), Expect = 1e-15
 Identities = 58/221 (26%), Positives = 114/221 (51%), Gaps = 1/221 (0%)
 Frame = +3

Query: 3   LYSXSPATAFQYTSLGRPILGSADNVKSITKKDLVDYIQNHYTASRMVITAAGAVKHDDI 182
           +Y     T ++   LG+ ILG+   + + TK+  +++I  HY A  + ++ AG ++H+ I
Sbjct: 141 IYETFYNTVYKGQPLGKSILGTTKTLVTFTKEHFLNFIGKHYNAENLYLSIAGNIEHNKI 200

Query: 183 VQQAKELFKTLPTDPTTTNMLVAKQPAIFTGSEVRIIDDDMPLAQFAVAFNGASWTDPDS 362
           V  A+ELF +L     ++ +     PA + G +   I  ++      + F   S+ +   
Sbjct: 201 VMIAEELFASLKQGVKSSFI-----PAKYIGGK-GFIHKELEQTSLVLGFECTSYINLGQ 254

Query: 363 IALMVMQTMLGSWNKSAGGGKHMGSELVQRVAIN-DIAESIMAFNTNYKDTGLFGVYAVA 539
           +    + +++       GGG  M S L Q +     +A  + ++N+ Y D+G+F +YA  
Sbjct: 255 LYQTYLLSII------FGGG--MSSRLFQSIREKLGLAYVVGSYNSAYFDSGVFTIYAST 306

Query: 540 KPDCLDDLAFAIMQEMSKLSYRVTEEDVIRARNQLKSSIQL 662
             + L+ L   I  E+ K++  V+ E++IRA+ QL+S++Q+
Sbjct: 307 AHNKLELLYREIKNEIIKITETVSTEEIIRAKMQLRSNLQM 347

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>MPPA_BLAEM (P97997) Mitochondrial-processing peptidase alpha subunit,|
           mitochondrial precursor (EC 3.4.24.64) (Alpha-MPP)
          Length = 474

 Score = 76.6 bits (187), Expect = 6e-14
 Identities = 67/229 (29%), Positives = 100/229 (43%), Gaps = 12/229 (5%)
 Frame = +3

Query: 21  ATAFQYTSLGRPILGSADNVKSITKKDLVDYIQNHYTASRMVITAAGAVKHDDIVQQAKE 200
           A AF    LG  I       +++T   + +Y   +   SRMV+   G V H ++V    +
Sbjct: 156 AVAFGGRGLGNSIFCEPQRARNMTSDTIREYFATYLHPSRMVVAGTG-VAHAELVDLVSK 214

Query: 201 LFKTLPTDPTTTNMLVAKQPAIFTGSEVRIIDDDMP--------LAQFAVAFNGASWTDP 356
            F    T   ++      + A   GS   +I    P        L    VAF    +T P
Sbjct: 215 AFVPSSTRAPSSVTHSDIETAYVGGSHQLVIPKPPPTHPNYEQTLTHVQVAFPVPPFTHP 274

Query: 357 DSIALMVMQTMLGSWNK-SAGG-GKHMGSELVQRVAINDIA--ESIMAFNTNYKDTGLFG 524
           D   +  +Q ++G     SAGG GK M S L   V +N     ES  AF   Y  T LFG
Sbjct: 275 DMFPVSTLQVLMGGGGAFSAGGPGKGMYSRLYTNV-LNRYRWMESCAAFQHAYSSTSLFG 333

Query: 525 VYAVAKPDCLDDLAFAIMQEMSKLSYRVTEEDVIRARNQLKSSIQLHLD 671
           + A   P     L   +  E   ++  +++E+V RA+NQLKSS+ ++L+
Sbjct: 334 ISASCVPSFNPHLCNVLAGEFVHMARNLSDEEVARAKNQLKSSLLMNLE 382

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>MPPA2_ARATH (O04308) Probable mitochondrial-processing peptidase alpha subunit|
           2, mitochondrial precursor (EC 3.4.24.64) (Alpha-MPP 2)
          Length = 499

 Score = 75.1 bits (183), Expect = 2e-13
 Identities = 60/215 (27%), Positives = 109/215 (50%), Gaps = 5/215 (2%)
 Frame = +3

Query: 42  SLGRPILGSADNVKSITKKDLVDYIQNHYTASRMVITAAGAVKHDDIVQQAKELFKTLPT 221
           +L  P+      +  +T + L +++  +YTASRMV+ A+G V H+++++  + L   LP 
Sbjct: 221 ALANPLYAPESAITGLTGEVLENFVFENYTASRMVLAASG-VDHEELLKVVEPLLSDLPN 279

Query: 222 DPTTTNMLVAKQPAIFTGSEVRIIDDDMPLAQFAVAFNGASW-TDPDSIALMVMQTMLGS 398
            P       A+  + + G + R          FA+AF    W  + ++I   V+Q ++G 
Sbjct: 280 VPRP-----AEPKSQYVGGDFR-QHTGGEATHFALAFEVPGWNNEKEAIIATVLQMLMGG 333

Query: 399 WNK-SAGG-GKHMGSELVQRVA-INDIAESIMAFNTNYKDTGLFGVYAVAKPDCLDDLAF 569
               SAGG GK M S L  R+   +   +S  AF + + +TGLFG+Y    P+       
Sbjct: 334 GGSFSAGGPGKGMHSWLYLRLLNQHQQFQSCTAFTSVFNNTGLFGIYGCTSPEFASQGIE 393

Query: 570 AIMQEMSKLS-YRVTEEDVIRARNQLKSSIQLHLD 671
            +  EM+ ++  +V ++ + RA+   KS+I ++L+
Sbjct: 394 LVASEMNAVADGKVNQKHLDRAKAATKSAILMNLE 428

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>MPPA_SOLTU (P29677) Mitochondrial-processing peptidase alpha subunit,|
           mitochondrial precursor (EC 3.4.24.64) (Alpha-MPP)
           (Ubiquinol-cytochrome-c reductase subunit II) (EC
           1.10.2.2)
          Length = 504

 Score = 74.7 bits (182), Expect = 2e-13
 Identities = 59/216 (27%), Positives = 109/216 (50%), Gaps = 8/216 (3%)
 Frame = +3

Query: 48  GRPILGSADNVKSITKKDLVDYIQNHYTASRMVITAAGAVKHDDIVQQAKELFKTLPTDP 227
           G  ++ +   +  +    L +++  +YTA RMV+ A+G V+H++ ++ A+ L   LP   
Sbjct: 224 GNSLMATEATINRLNSTVLEEFVAENYTAPRMVLAASG-VEHEEFLKVAEPLLSDLPKVA 282

Query: 228 TTTNMLVAKQPAIFTGSEVRIIDDDMPLAQFAVAFN--GASWTDPDSIALMVMQTMLGSW 401
           T     + +   ++ G + R    D  +  FA+AF   G   ++ +S+ L V+Q ++G  
Sbjct: 283 T-----IEEPKPVYVGGDYR-CQADAEMTHFALAFEVPGGWMSEKESMTLTVLQMLMGGG 336

Query: 402 NK-SAGG-GKHMGSELVQRVAINDIAE--SIMAFNTNYKDTGLFGVYAVAKPDCLDDLAF 569
              SAGG GK M S L  RV +N   +  +  AF++ Y +TGLFG+      D       
Sbjct: 337 GSFSAGGPGKGMYSRLYLRV-LNQYPQIHAFSAFSSIYNNTGLFGIQGTTSSDFGPQAVD 395

Query: 570 AIMQEMSKLS--YRVTEEDVIRARNQLKSSIQLHLD 671
             ++E+  ++    V +  + RA+   KS+I ++L+
Sbjct: 396 VAVKELIAVANPSEVDQVQLNRAKQATKSAILMNLE 431

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>MPPA1_ARATH (Q9ZU25) Probable mitochondrial-processing peptidase alpha subunit|
           1, mitochondrial precursor (EC 3.4.24.64) (Alpha-MPP 1)
          Length = 503

 Score = 72.8 bits (177), Expect = 9e-13
 Identities = 61/218 (27%), Positives = 108/218 (49%), Gaps = 9/218 (4%)
 Frame = +3

Query: 45  LGRPILGSADNVKSITKKDLVDYIQNHYTASRMVITAAGAVKHDDIVQQAKELFKTLPTD 224
           L  P+      +  +  + L +++  ++TA+RMV+ A+G V+H+++++ A+ L   LP  
Sbjct: 226 LASPLYAPESALDRLNGELLEEFMTENFTAARMVLAASG-VEHEELLKVAEPLTSDLPNV 284

Query: 225 P---TTTNMLVAKQPAIFTGSEVRIIDDDMPLAQFAVAFNGASWT-DPDSIALMVMQTML 392
           P      +  V       TG E            FAVAF    W  + +++   V+Q ++
Sbjct: 285 PPQLAPKSQYVGGDFRQHTGGEA---------THFAVAFEVPGWNNEKEAVTATVLQMLM 335

Query: 393 GSWNK-SAGG-GKHMGSELVQRVAINDIAE--SIMAFNTNYKDTGLFGVYAVAKPDCLDD 560
           G     SAGG GK M S L +RV +N+  E  S  AF + + DTGLFG+Y  + P     
Sbjct: 336 GGGGSFSAGGPGKGMHSWLYRRV-LNEYQEVQSCTAFTSIFNDTGLFGIYGCSSPQFAAK 394

Query: 561 LAFAIMQEMSKLS-YRVTEEDVIRARNQLKSSIQLHLD 671
                 +E+  ++  +V +  + RA+   KS++ ++L+
Sbjct: 395 AIELAAKELKDVAGGKVNQAHLDRAKAATKSAVLMNLE 432

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>MPPA_MOUSE (Q9DC61) Mitochondrial-processing peptidase alpha subunit,|
           mitochondrial precursor (EC 3.4.24.64) (Alpha-MPP)
           (P-55)
          Length = 524

 Score = 69.7 bits (169), Expect = 8e-12
 Identities = 57/231 (24%), Positives = 107/231 (46%), Gaps = 16/231 (6%)
 Frame = +3

Query: 27  AFQYTSLGRPILGSADNVKSITKKDLVDYIQNHYTASRMVITAAGAVKHDDIVQQAKE-L 203
           AF+  ++G       +N+  I ++ L  Y++N+YT  RMV+   G V+H+ +V+ A++ L
Sbjct: 212 AFRENTVGLHRFCPVENIAKIDREVLHSYLKNYYTPDRMVLAGVG-VEHEHLVECARKYL 270

Query: 204 FKTLPTDPTTTNMLVAKQPAIFTGSEVRIIDD---------DMP-LAQFAVAFNGASWTD 353
               P       + V +  A +TG  +++  D          +P L    V     S+ +
Sbjct: 271 VGAEPAWGAPGTVDVDRSVAQYTGGIIKVERDMSNVSLGPTPIPELTHIMVGLESCSFLE 330

Query: 354 PDSIALMVMQTMLGSWNKSAGGGKHMGSELVQRVAINDIAESIMAFNT-----NYKDTGL 518
            D I   V+  M+G     + GG   G  +  R+ +N +      +N      +Y+DTGL
Sbjct: 331 DDFIPFAVLNMMMGGGGSFSAGGP--GKGMFSRLYLNVLNRHHWMYNATSYHHSYEDTGL 388

Query: 519 FGVYAVAKPDCLDDLAFAIMQEMSKLSYRVTEEDVIRARNQLKSSIQLHLD 671
             ++A A P  + ++   I +E   +   V   ++ RA+ QL S + ++L+
Sbjct: 389 LCIHASADPRQVREMVEIITKEFILMGRTVDLVELERAKTQLMSMLMMNLE 439

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>MPPA_PONPY (Q5R513) Mitochondrial-processing peptidase alpha subunit,|
           mitochondrial precursor (EC 3.4.24.64) (Alpha-MPP)
          Length = 525

 Score = 69.3 bits (168), Expect = 1e-11
 Identities = 57/231 (24%), Positives = 107/231 (46%), Gaps = 16/231 (6%)
 Frame = +3

Query: 27  AFQYTSLGRPILGSADNVKSITKKDLVDYIQNHYTASRMVITAAGAVKHDDIVQQAKE-L 203
           A++  ++G       +N+  I ++ L  Y++N+YT  RMV+   G V+H+ +V  A++ L
Sbjct: 213 AYRENTVGLHRFCPTENIAKINREVLHSYLRNYYTPDRMVLAGVG-VEHEHLVDCARKYL 271

Query: 204 FKTLPTDPTTTNMLVAKQPAIFTG---------SEVRIIDDDMP-LAQFAVAFNGASWTD 353
               P   +   + + +  A +TG         S V +    +P L    V     S+ +
Sbjct: 272 LGIQPAWGSAEAVDIDRSVAQYTGGIAKRERDMSNVSLGPTPIPELTHIMVGLESCSFLE 331

Query: 354 PDSIALMVMQTMLGSWNKSAGGGKHMGSELVQRVAINDIAESIMAFNT-----NYKDTGL 518
            D I   V+  M+G     + GG   G  +  R+ +N +      +N      +Y+DTGL
Sbjct: 332 EDFIPFAVLNMMMGGGGSFSAGGP--GKGMFSRLYLNVLNRHHWMYNATSYHHSYEDTGL 389

Query: 519 FGVYAVAKPDCLDDLAFAIMQEMSKLSYRVTEEDVIRARNQLKSSIQLHLD 671
             ++A A P  + ++   I +E   +S  V   ++ RA+ QL S + ++L+
Sbjct: 390 LCIHASADPRQVREMVEIITKEFILMSGTVDAVELERAKTQLTSMLMMNLE 440

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>MPPA_HUMAN (Q10713) Mitochondrial-processing peptidase alpha subunit,|
           mitochondrial precursor (EC 3.4.24.64) (Alpha-MPP)
           (P-55)
          Length = 525

 Score = 68.6 bits (166), Expect = 2e-11
 Identities = 57/231 (24%), Positives = 106/231 (45%), Gaps = 16/231 (6%)
 Frame = +3

Query: 27  AFQYTSLGRPILGSADNVKSITKKDLVDYIQNHYTASRMVITAAGAVKHDDIVQQAKE-L 203
           A++  ++G       +NV  I ++ L  Y++N+YT  RMV+   G V+H+ +V  A++ L
Sbjct: 213 AYRENTVGLHRFCPTENVAKINREVLHSYLRNYYTPDRMVLAGVG-VEHEHLVDCARKYL 271

Query: 204 FKTLPTDPTTTNMLVAKQPAIFTG---------SEVRIIDDDMP-LAQFAVAFNGASWTD 353
               P   +   + + +  A +TG         S V +    +P L    V     S+ +
Sbjct: 272 LGVQPAWGSAEAVDIDRSVAQYTGGIAKLERDMSNVSLGPTPIPELTHIMVGLESCSFLE 331

Query: 354 PDSIALMVMQTMLGSWNKSAGGGKHMGSELVQRVAINDIAESIMAFNT-----NYKDTGL 518
            D I   V+  M+G     + GG   G  +  R+ +N +      +N      +Y+DTGL
Sbjct: 332 EDFIPFAVLNMMMGGGGSFSAGGP--GKGMFSRLYLNVLNRHHWMYNATSYHHSYEDTGL 389

Query: 519 FGVYAVAKPDCLDDLAFAIMQEMSKLSYRVTEEDVIRARNQLKSSIQLHLD 671
             ++A A P  + ++   I +E   +   V   ++ RA+ QL S + ++L+
Sbjct: 390 LCIHASADPRQVREMVEIITKEFILMGGTVDTVELERAKTQLTSMLMMNLE 440

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>UQCR2_RAT (P32551) Ubiquinol-cytochrome-c reductase complex core protein 2,|
           mitochondrial precursor (EC 1.10.2.2) (Complex III
           subunit II)
          Length = 452

 Score = 67.8 bits (164), Expect = 3e-11
 Identities = 57/214 (26%), Positives = 105/214 (49%), Gaps = 2/214 (0%)
 Frame = +3

Query: 42  SLGRPILGSADNVKSITKKDLVDYIQNHYTASRMVITAAGAVKHDDIVQQAKELFKTLPT 221
           +L  P+      +  IT ++L  ++QNH+T++RM +   G V H  I+++  E F  +  
Sbjct: 184 ALANPLYCPDYRMGKITSEELHYFVQNHFTSARMALVGLG-VSHS-ILKEVAEQFLNI-- 239

Query: 222 DPTTTNMLVAKQPAIFTGSEVRIIDDDMPLAQFAVAFNGASWTDPDSIALMVMQTMLGSW 401
                 + +A   A + G E+R  + D  L   A+    A+  + ++ A  V+Q +LG+ 
Sbjct: 240 ---RGGLGLAGAKAKYRGGEIREQNGDN-LVHAAIVAESAAIGNAEANAFSVLQHLLGA- 294

Query: 402 NKSAGGGKHMGSELVQRVAINDIAE-SIMAFNTNYKDTGLFGVYAVAKPDCLDDLAFAIM 578
                 G +  S L Q VA        + AFN +Y D+GLFG+Y V++     D+  A  
Sbjct: 295 GPHIKRGNNTTSLLSQSVAKGSQQPFDVSAFNASYSDSGLFGIYTVSQAAAAGDVINAAY 354

Query: 579 QEMSKLSY-RVTEEDVIRARNQLKSSIQLHLDGS 677
            ++  ++   ++  DV  A+N+LK+   + ++ S
Sbjct: 355 NQVKAVAQGNLSSADVQAAKNKLKAGYLMSVETS 388

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>UQCR2_BOVIN (P23004) Ubiquinol-cytochrome-c reductase complex core protein 2,|
           mitochondrial precursor (EC 1.10.2.2) (Complex III
           subunit II)
          Length = 453

 Score = 67.0 bits (162), Expect = 5e-11
 Identities = 54/202 (26%), Positives = 99/202 (49%), Gaps = 2/202 (0%)
 Frame = +3

Query: 78  VKSITKKDLVDYIQNHYTASRMVITAAGAVKHDDIVQQAKELFKTLPTDPTTTNMLVAKQ 257
           +  +T  +L DY+QNH+T++RM +   G V H  +++Q  E F  +        + ++  
Sbjct: 197 IGKVTPVELHDYVQNHFTSARMALIGLG-VSHP-VLKQVAEQFLNI-----RGGLGLSGA 249

Query: 258 PAIFTGSEVRIIDDDMPLAQFAVAFNGASWTDPDSIALMVMQTMLGSWNKSAGGGKHMGS 437
            A + G E+R  + D  L   A+    A+    ++ A  V+Q +LG+       G +  S
Sbjct: 250 KAKYHGGEIREQNGDS-LVHAALVAESAAIGSAEANAFSVLQHVLGA-GPHVKRGSNATS 307

Query: 438 ELVQRVAINDIAE-SIMAFNTNYKDTGLFGVYAVAKPDCLDDLAFAIMQEMSKLSY-RVT 611
            L Q VA        + AFN +Y D+GLFG Y +++     D+  A   ++  ++   ++
Sbjct: 308 SLYQAVAKGVHQPFDVSAFNASYSDSGLFGFYTISQAASAGDVIKAAYNQVKTIAQGNLS 367

Query: 612 EEDVIRARNQLKSSIQLHLDGS 677
             DV  A+N+LK+   + ++ S
Sbjct: 368 NPDVQAAKNKLKAGYLMSVESS 389

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>UQCR2_MOUSE (Q9DB77) Ubiquinol-cytochrome-c reductase complex core protein 2,|
           mitochondrial precursor (EC 1.10.2.2) (Complex III
           subunit II)
          Length = 453

 Score = 66.6 bits (161), Expect = 6e-11
 Identities = 55/214 (25%), Positives = 105/214 (49%), Gaps = 2/214 (0%)
 Frame = +3

Query: 42  SLGRPILGSADNVKSITKKDLVDYIQNHYTASRMVITAAGAVKHDDIVQQAKELFKTLPT 221
           +L  P+      +  IT ++L  ++QNH+T++RM +   G V H  +++Q  E F  +  
Sbjct: 185 ALANPLYCPDYRMGKITSEELHYFVQNHFTSARMALVGLG-VSHS-VLKQVAEQFLNM-- 240

Query: 222 DPTTTNMLVAKQPAIFTGSEVRIIDDDMPLAQFAVAFNGASWTDPDSIALMVMQTMLGSW 401
                 + +A   A + G E+R  + D  L   A+    A+  + ++ A  V+Q +LG+ 
Sbjct: 241 ---RGGLGLAGAKAKYRGGEIREQNGDN-LVHAAIVAESAAIGNAEANAFSVLQHLLGA- 295

Query: 402 NKSAGGGKHMGSELVQRVAINDIAE-SIMAFNTNYKDTGLFGVYAVAKPDCLDDLAFAIM 578
                 G +  S L Q VA        + AFN +Y D+GLFG+Y +++     ++  A  
Sbjct: 296 GPHIKRGNNTTSLLSQSVAKGSHQPFDVSAFNASYSDSGLFGIYTISQAAAAGEVINAAY 355

Query: 579 QEMSKLSY-RVTEEDVIRARNQLKSSIQLHLDGS 677
            ++  ++   ++  DV  A+N+LK+   + ++ S
Sbjct: 356 NQVKAVAQGNLSSADVQAAKNKLKAGYLMSVETS 389

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>UQCR2_HUMAN (P22695) Ubiquinol-cytochrome-c reductase complex core protein 2,|
           mitochondrial precursor (EC 1.10.2.2) (Complex III
           subunit II)
          Length = 453

 Score = 66.2 bits (160), Expect = 8e-11
 Identities = 54/214 (25%), Positives = 102/214 (47%), Gaps = 2/214 (0%)
 Frame = +3

Query: 42  SLGRPILGSADNVKSITKKDLVDYIQNHYTASRMVITAAGAVKHDDIVQQAKELFKTLPT 221
           +L  P+      +  +T ++L  ++QNH+T++RM +   G V H  +++Q  E F  +  
Sbjct: 185 ALANPLYCPDYRIGKVTSEELHYFVQNHFTSARMALIGLG-VSHP-VLKQVAEQFLNM-- 240

Query: 222 DPTTTNMLVAKQPAIFTGSEVRIIDDDMPLAQFAVAFNGASWTDPDSIALMVMQTMLGSW 401
                 + ++   A + G E+R  + D  L   A     A     ++ A  V+Q +LG+ 
Sbjct: 241 ---RGGLGLSGAKANYRGGEIREQNGDS-LVHAAFVAESAVAGSAEANAFSVLQHVLGA- 295

Query: 402 NKSAGGGKHMGSELVQRVA-INDIAESIMAFNTNYKDTGLFGVYAVAKPDCLDDLAFAIM 578
                 G +  S L Q VA        + AFN +Y D+GLFG+Y +++     D+  A  
Sbjct: 296 GPHVKRGSNTTSHLHQAVAKATQQPFDVSAFNASYSDSGLFGIYTISQATAAGDVIKAAY 355

Query: 579 QEMSKLSY-RVTEEDVIRARNQLKSSIQLHLDGS 677
            ++  ++   ++  DV  A+N+LK+   + ++ S
Sbjct: 356 NQVKTIAQGNLSNTDVQAAKNKLKAGYLMSVESS 389

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>YMXG_BACSU (Q04805) Hypothetical zinc protease ymxG (EC 3.4.99.-) (ORFP)|
          Length = 409

 Score = 65.5 bits (158), Expect = 1e-10
 Identities = 51/214 (23%), Positives = 101/214 (47%), Gaps = 2/214 (0%)
 Frame = +3

Query: 42  SLGRPILGSADNVKSITKKDLVDYIQNHYTASRMVITAAGAVKHDDIVQQAKELFKTLPT 221
           SLG PILG+ + + S     L  Y+ ++YT  R+VI+ AG +  D  ++  ++ F +   
Sbjct: 151 SLGYPILGTEETLASFNGDSLRQYMHDYYTPDRVVISVAGNIS-DSFIKDVEKWFGSYEA 209

Query: 222 DPTTTNMLVAKQPAIFTGSEVRIIDDDMPLAQFAVAFNGASWTDPDSIALMVMQTMLGSW 401
               T +   ++P   T    R  + +   A   + F G          L+V+  +LG  
Sbjct: 210 KGKATGL---EKPEFHTEKLTRKKETEQ--AHLCLGFKGLEVGHERIYDLIVLNNVLGG- 263

Query: 402 NKSAGGGKHMGSELVQRVAIN-DIAESIMAFNTNYKDTGLFGVYAVAKPDCLDDLAFAIM 578
                    M S L Q V  +  +A S+ +++++Y+D+G+  +Y     + L  L+  I 
Sbjct: 264 --------SMSSRLFQDVREDKGLAYSVYSYHSSYEDSGMLTIYGGTGANQLQQLSETIQ 315

Query: 579 QEMSKLSY-RVTEEDVIRARNQLKSSIQLHLDGS 677
           + ++ L    +T +++  ++ Q+K S+ L L+ +
Sbjct: 316 ETLATLKRDGITSKELENSKEQMKGSLMLSLEST 349

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>MPPA_NEUCR (P23955) Mitochondrial-processing peptidase alpha subunit,|
           mitochondrial precursor (EC 3.4.24.64) (Alpha-MPP)
          Length = 577

 Score = 64.3 bits (155), Expect = 3e-10
 Identities = 52/154 (33%), Positives = 79/154 (51%), Gaps = 15/154 (9%)
 Frame = +3

Query: 255 QPAIFTGSEVRIIDDDMPL-------AQFAVAFNGASWTDPDSIALMVMQTMLGSWNK-S 410
           +PA +TG  + +     PL           +AF G + +D D  AL  +QT+LG     S
Sbjct: 331 RPAHYTGGFLTLPSQPPPLNPNLPTFTHIQLAFEGLAISDDDIYALATLQTLLGGGGSFS 390

Query: 411 AGG-GKHMGSELVQRVAI-NDIAESIMAFNTNYKDTGLFGVYAVAKPDCLDDLAFAIMQE 584
           AGG GK M S L   V   +   ES +AFN +Y D+GLFG+ A   P     +   + +E
Sbjct: 391 AGGPGKGMYSRLYTNVLNQHGWVESCVAFNHSYTDSGLFGIAASCYPGRTLPMLQVMCRE 450

Query: 585 MSKLS-----YRVTEEDVIRARNQLKSSIQLHLD 671
           +  L+       + E +V RA+NQL+SS+ ++L+
Sbjct: 451 LHALTTDHGYSALGELEVSRAKNQLRSSLLMNLE 484

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>Y855_MYCLE (O32965) Hypothetical zinc protease ML0855 (EC 3.4.99.-)|
          Length = 445

 Score = 63.9 bits (154), Expect = 4e-10
 Identities = 60/227 (26%), Positives = 98/227 (43%), Gaps = 8/227 (3%)
 Frame = +3

Query: 21  ATAFQYTSLGRPILGSADNVKSITKKDLVDYIQNHYTASRMVITAAGAVKHDDIVQQAKE 200
           A  F    +GRP++G+ ++V ++T+  L  +    YT  RMV+  AG V HD++V   +E
Sbjct: 164 AALFGDHPVGRPVIGTMESVSAMTRTQLHSFHVRRYTPERMVVAVAGNVDHDEMVALVRE 223

Query: 201 LFKT------LPTDPTTTNMLVAKQPAIFTGSEVRIIDDDMPLAQFAVAFNGASWTDPDS 362
            F +          P  +   +   PA+  G      D +       V   G SW     
Sbjct: 224 HFGSRLIRGRQSAPPRKSTGRINGGPALTLGKR----DAEQTHVLLGVRTPGRSW--EHR 277

Query: 363 IALMVMQTMLGSWNKSAGGGKHMGSELVQRV-AINDIAESIMAFNTNYKDTGLFGVYAVA 539
            AL V+ T LG      GG   + S L Q +     +A S+ +    + D+G   VYA  
Sbjct: 278 WALSVLHTALG------GG---LSSRLFQEIRETRGLAYSVYSALDIFADSGALSVYAAC 328

Query: 540 KPDCLDDLAFAIMQEMSKLS-YRVTEEDVIRARNQLKSSIQLHLDGS 677
            P    D+   I + ++ ++   +TE +   A+  L+  I L L+ S
Sbjct: 329 LPGRFADVMQVISEVLASVAGDGITEAECRIAKGSLRGGIILGLEDS 375

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>Y2805_MYCBO (P0A5S9) Hypothetical zinc protease Mb2805c (EC 3.4.99.-)|
          Length = 438

 Score = 62.0 bits (149), Expect = 2e-09
 Identities = 61/227 (26%), Positives = 93/227 (40%), Gaps = 8/227 (3%)
 Frame = +3

Query: 21  ATAFQYTSLGRPILGSADNVKSITKKDLVDYIQNHYTASRMVITAAGAVKHDDIVQQAKE 200
           A  F    +GRP++GSA +V  +T+  L  +    YT  RMV+ AAG V HD +V   +E
Sbjct: 157 AALFGDHPVGRPVIGSAQSVSVMTRAQLQSFHLRRYTPERMVVAAAGNVDHDGLVALVRE 216

Query: 201 LFKT------LPTDPTTTNMLVAKQPAIFTGSEVRIIDDDMPLAQFAVAFNGASWTDPDS 362
            F +       P  P      V   P +   S     D +       +   G  W     
Sbjct: 217 HFGSRLVRGRRPVAPRKGTGRVNGSPRLTLVSR----DAEQTHVSLGIRTPGRGW--EHR 270

Query: 363 IALMVMQTMLGSWNKSAGGGKHMGSELVQRV-AINDIAESIMAFNTNYKDTGLFGVYAVA 539
            AL V+ T LG      GG   + S L Q V     +A S+ +    + D+G   VYA  
Sbjct: 271 WALSVLHTALG------GG---LSSRLFQEVRETRGLAYSVYSALDLFADSGALSVYAAC 321

Query: 540 KPDCLDDLAFAIMQEMSKLSY-RVTEEDVIRARNQLKSSIQLHLDGS 677
            P+   D+       +  ++   +TE +   A+  L+  + L L+ S
Sbjct: 322 LPERFADVMRVTADVLESVARDGITEAECGIAKGSLRGGLVLGLEDS 368

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>Y2782_MYCTU (P0A5S8) Hypothetical zinc protease Rv2782c/MT2852 (EC 3.4.99.-)|
          Length = 438

 Score = 62.0 bits (149), Expect = 2e-09
 Identities = 61/227 (26%), Positives = 93/227 (40%), Gaps = 8/227 (3%)
 Frame = +3

Query: 21  ATAFQYTSLGRPILGSADNVKSITKKDLVDYIQNHYTASRMVITAAGAVKHDDIVQQAKE 200
           A  F    +GRP++GSA +V  +T+  L  +    YT  RMV+ AAG V HD +V   +E
Sbjct: 157 AALFGDHPVGRPVIGSAQSVSVMTRAQLQSFHLRRYTPERMVVAAAGNVDHDGLVALVRE 216

Query: 201 LFKT------LPTDPTTTNMLVAKQPAIFTGSEVRIIDDDMPLAQFAVAFNGASWTDPDS 362
            F +       P  P      V   P +   S     D +       +   G  W     
Sbjct: 217 HFGSRLVRGRRPVAPRKGTGRVNGSPRLTLVSR----DAEQTHVSLGIRTPGRGW--EHR 270

Query: 363 IALMVMQTMLGSWNKSAGGGKHMGSELVQRV-AINDIAESIMAFNTNYKDTGLFGVYAVA 539
            AL V+ T LG      GG   + S L Q V     +A S+ +    + D+G   VYA  
Sbjct: 271 WALSVLHTALG------GG---LSSRLFQEVRETRGLAYSVYSALDLFADSGALSVYAAC 321

Query: 540 KPDCLDDLAFAIMQEMSKLSY-RVTEEDVIRARNQLKSSIQLHLDGS 677
            P+   D+       +  ++   +TE +   A+  L+  + L L+ S
Sbjct: 322 LPERFADVMRVTADVLESVARDGITEAECGIAKGSLRGGLVLGLEDS 368

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>MPPA_RAT (P20069) Mitochondrial-processing peptidase alpha subunit,|
           mitochondrial precursor (EC 3.4.24.64) (Alpha-MPP)
           (P-55)
          Length = 524

 Score = 60.5 bits (145), Expect = 5e-09
 Identities = 59/231 (25%), Positives = 105/231 (45%), Gaps = 16/231 (6%)
 Frame = +3

Query: 27  AFQYTSLGRPILGSADNVKSITKKDLVDYIQNHYTASRMVITAAGAVKHDDIVQQAKE-L 203
           AF+  ++G       +N+  I ++ L  Y++N+YT  RMV+   G V+H+ +V+ A++ L
Sbjct: 212 AFRENTVGLHRFCPVENIGKIDREVLHSYLKNYYTPDRMVLAGVG-VEHEHLVECARKYL 270

Query: 204 FKTLPT--DPTTTNMLVAKQPAIFTGSEVRIIDDDM-----PLAQFAVAFNGAS---WTD 353
               P    P    ML A+  +   GS        M     P  Q +  + GA      +
Sbjct: 271 LGVQPAWGAPGAVWMLTAQWHSTRGGSSRWRETCQMSALRPPRFQSSHIYGGARELLLLE 330

Query: 354 PDSIALMVMQTMLGSWNKSAGGGKHMGSELVQRVAINDIAESIMAFNT-----NYKDTGL 518
            D I   V+  M+G     + GG   G  +  R+ +N +      +N      +Y+DTGL
Sbjct: 331 EDFIPFAVLNMMMGGGGSFSAGGP--GKGMFSRLYLNVLNRHHWMYNATSYHHSYEDTGL 388

Query: 519 FGVYAVAKPDCLDDLAFAIMQEMSKLSYRVTEEDVIRARNQLKSSIQLHLD 671
             ++A A P  + ++   I +E   +   V   ++ RA+ QL S + ++L+
Sbjct: 389 LCIHASADPRQVREMVEIITKEFILMGRTVDLVELERAKTQLMSMLMMNLE 439

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>Y4WB_RHISN (P55680) Hypothetical zinc protease-like protein y4wB|
          Length = 447

 Score = 43.1 bits (100), Expect = 8e-04
 Identities = 42/197 (21%), Positives = 83/197 (42%), Gaps = 3/197 (1%)
 Frame = +3

Query: 63  GSADNVKSITKKDLVDYIQNHYTASRMVITAAGAVKHDDIVQQAKELFKTLPTDPTTTNM 242
           G+   + ++T  DL    +  +    + I   GA+    + +    +F  LP  P+ T +
Sbjct: 191 GTVQTLAAVTTSDLKAVHERIFARGNLTIAVVGAIDPGTLKRDLDRIFGGLPAGPSLTPV 250

Query: 243 LVAKQPAIFTGSEVRIIDDDMPLAQFAVAFNGASWTDPDSIALMVMQTMLGSWNKSAGGG 422
           + A       G  +R+  D +P AQ ++A+ G    DP   A  +M  +LG      GG 
Sbjct: 251 VDAVPKL---GRAIRVAYD-LPQAQLSLAYPGIPRKDPQFFAANLMNQILG------GGA 300

Query: 423 --KHMGSELVQRVAINDIAESIMAFNTNYKDTGLFGVYAVAKPDCLDDLAFAIMQEMSKL 596
               + +E+ ++     +A  I +   N        +    +PD   +    I  E+ ++
Sbjct: 301 FTSRLWNEVREK---RGLAYGIYSTLENIDHASALVIGTGTRPDRAAETLSLIQAEVRRM 357

Query: 597 SYR-VTEEDVIRARNQL 644
           S   V+E+++  A+ +L
Sbjct: 358 SEEGVSEDELTAAKKKL 374

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>YP183_YEAST (Q08924) WD-repeat protein YPL183C|
          Length = 1013

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 6/101 (5%)
 Frame = -2

Query: 500 VCVECH--YTLSYVIDCYSLYKL---RTHVLPSSSTLVPGT-KHGLHNH*CNRIGICPGC 339
           VC   H  + L+ + D + L  +   R H+    +++VP T ++G+H      I ICP  
Sbjct: 607 VCGGSHRLWNLAKITDGHVLMYIKASRFHLRKIYNSIVPETLENGVHGREIRDISICPVS 666

Query: 338 SIEGNSKLSKGHVIINDSYLRTSKNGWLLSNQHVGCCRVSW 216
           +   N     GH+    S   T K G+   N   G  +  W
Sbjct: 667 NTNTNDNFKDGHIFCTASEDTTIKLGYF--NNRTGKVQNFW 705

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>YPD1_CAEEL (P48053) Hypothetical protein C05D11.1 in chromosome III|
          Length = 995

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 81  KSITKKDLVDYIQNHYTASRMVITAAGAVKHDDIVQ 188
           +S T + + DY +  Y  S MV+T  G V HD +++
Sbjct: 193 ESCTLEKVRDYHKKFYHLSNMVVTVCGMVDHDQVLE 228

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>C4BP_HUMAN (P04003) C4b-binding protein alpha chain precursor (C4bp)|
           (Proline-rich protein) (PRP)
          Length = 597

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -3

Query: 481 ILSAMSLIATLCTSSEPMCFPPPALLFQEPSMVCITINAIESGS 350
           IL  M+LIA L  +    C PPP L F  P  + +T    ++G+
Sbjct: 32  ILFQMTLIAALLPAVLGNCGPPPTLSFAAPMDITLTETRFKTGT 75

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>FIMD_SALTY (P37924) Outer membrane usher protein fimD precursor|
          Length = 870

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 9/54 (16%)
 Frame = +3

Query: 294 DDDMPLAQFAVAFNGASWTDPDSIALMVMQTML---------GSWNKSAGGGKH 428
           D+ +P A    +F G+  TD DS  L ++  +          G+WN S G G H
Sbjct: 175 DEGIPAALINYSFTGSRGTDSDSYFLSLLSGLNYGPWRLRNNGAWNYSKGDGYH 228

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>GATE_THEVO (Q979L9) Glutamyl-tRNA(Gln) amidotransferase subunit E (EC 6.3.5.-)|
           (Glu-ADT subunit E)
          Length = 598

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 19/62 (30%), Positives = 32/62 (51%)
 Frame = +3

Query: 18  PATAFQYTSLGRPILGSADNVKSITKKDLVDYIQNHYTASRMVITAAGAVKHDDIVQQAK 197
           P T     ++ + IL  +D +KS+  +DLV  I   Y  S+ V   A ++  D  +Q+ +
Sbjct: 418 PETDIPVIAVSKDILQKSDKIKSVGFEDLVSSIITKYGISKQV---AESLASDMKIQELE 474

Query: 198 EL 203
           EL
Sbjct: 475 EL 476

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>DJLA_HAEIN (P44607) DnaJ-like protein djlA|
          Length = 288

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 20/44 (45%), Positives = 26/44 (59%)
 Frame = +3

Query: 540 KPDCLDDLAFAIMQEMSKLSYRVTEEDVIRARNQLKSSIQLHLD 671
           + D     +FA++  +SK   RVTEED I+  NQL   IQL LD
Sbjct: 53  RQDLFMQTSFAVLGHLSKSKGRVTEED-IQLANQL--MIQLKLD 93

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>CRBB2_CHICK (Q05714) Beta crystallin B2 (BP)|
          Length = 218

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +3

Query: 180 IVQQAKELFKTLPTDPTTTNMLVAKQPAIFTGSEVRIIDDDMP 308
           +V+  ++   T  T  +  + +V  +   FTG ++ IIDDD+P
Sbjct: 101 VVRAPRQPLPTRQTKDSQEHKIVLYENPSFTGKKIEIIDDDVP 143

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>CO6A1_MOUSE (Q04857) Collagen alpha-1(VI) chain precursor|
          Length = 1025

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 20/72 (27%), Positives = 34/72 (47%)
 Frame = +3

Query: 51  RPILGSADNVKSITKKDLVDYIQNHYTASRMVITAAGAVKHDDIVQQAKELFKTLPTDPT 230
           +P     D VKS TK+ + +    +Y   R ++  AGA+ + D V    E+ + L   P+
Sbjct: 52  KPYGALVDKVKSFTKRFIDNLRDRYYRCDRNLVWNAGALHYSDEV----EIIRGLTRMPS 107

Query: 231 TTNMLVAKQPAI 266
             + L A   A+
Sbjct: 108 GRDELKASVDAV 119

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>NEO1_MOUSE (P97798) Neogenin precursor|
          Length = 1493

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -3

Query: 451 LCTSSEPMCFPPPALLFQEPSMVCITINAIESGSVQDAP 335
           LCTSS   C PPP LL   P ++ +   A  + + +  P
Sbjct: 11  LCTSSSRRCCPPPPLLLLLPLLLLLGRPASGAAATKSGP 49

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>LEU1_CORGL (P42455) 2-isopropylmalate synthase (EC 2.3.3.13)|
           (Alpha-isopropylmalate synthase) (Alpha-IPM synthetase)
          Length = 616

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 19/64 (29%), Positives = 27/64 (42%)
 Frame = +3

Query: 93  KKDLVDYIQNHYTASRMVITAAGAVKHDDIVQQAKELFKTLPTDPTTTNMLVAKQPAIFT 272
           K  +V +  +     R V+     V+   +   A EL KT+  D   TN      P  FT
Sbjct: 157 KNVIVHFYNSTSILQRNVVFRMDKVQVKKLATDAAELIKTIAQDYPDTNWRWQYSPESFT 216

Query: 273 GSEV 284
           G+EV
Sbjct: 217 GTEV 220


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,765,371
Number of Sequences: 219361
Number of extensions: 2079064
Number of successful extensions: 5790
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 5567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5739
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6655306086
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result