| Clone Name | bags39i17 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_478533.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1413 Score = 365 bits (184), Expect = 1e-97 Identities = 310/352 (88%) Strand = Plus / Plus Query: 2 gctgtatgtccaatagctatcaaatataataaaatatttgttgacgccttctggaatagt 61 |||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||| Sbjct: 825 gctgtatgcccaatagctatcaaatacaataaaatatttgttgatgccttctggaatagt 884 Query: 62 aagaagcaatcttttacaatgcatttggttcgtcttatgacatcgtgggctgttgtttgt 121 ||||||||||| ||||||||||| |||||| | ||||||||||| ||||| ||||| ||| Sbjct: 885 aagaagcaatcgtttacaatgcacttggttaggcttatgacatcatgggcagttgtgtgt 944 Query: 122 gatgtttggttcttggaacctcaatatctcagggaaggggagacagcgatagaatttact 181 ||||| |||| |||||| ||||| ||||| ||||| || || ||||| || |||||| || Sbjct: 945 gatgtatggtacttggagcctcagtatctgagggatggagaaacagcaattgaatttgct 1004 Query: 182 gaaagagtgagggacatgatagctgctcgggctggtcttaagaaggttccatgggatggc 241 |||||||| || ||||||||||||||| | |||||||||||||||||||| ||||| || Sbjct: 1005 gaaagagtaagagacatgatagctgctagagctggtcttaagaaggttccgtgggacggg 1064 Query: 242 tatctgaaacataaccgccctagcccaaaacatactgaggaaaagcagcgcatgtttgct 301 ||||||||||| ||||||||||| || ||||| ||||| || ||||||||||| |||||| Sbjct: 1065 tatctgaaacacaaccgccctagtcccaaacacactgaagagaagcagcgcatctttgct 1124 Query: 302 gaatctgtgttgaggagactagaagaaaactaaatagctatcaatcaactct 353 || ||||||||| ||||||| || |||| ||||| || |||||||||||||| Sbjct: 1125 gactctgtgttgcggagactggaggaaagctaaacagatatcaatcaactct 1176 Score = 65.9 bits (33), Expect = 1e-07 Identities = 52/57 (91%), Gaps = 1/57 (1%) Strand = Plus / Plus Query: 430 atgtggaaatgaccaccgcagttttgctgtaaatttgtttgcagtttgacagaatca 486 |||||||||| ||||| ||||||||| |||||||| |||||||| |||||||||||| Sbjct: 1236 atgtggaaattaccactgcagttttgttgtaaatt-gtttgcagcttgacagaatca 1291
>dbj|AK067845.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013124G01, full insert sequence Length = 1413 Score = 357 bits (180), Expect = 3e-95 Identities = 309/352 (87%) Strand = Plus / Plus Query: 2 gctgtatgtccaatagctatcaaatataataaaatatttgttgacgccttctggaatagt 61 |||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||| Sbjct: 825 gctgtatgcccaatagctatcaaatacaataaaatatttgttgatgccttctggaatagt 884 Query: 62 aagaagcaatcttttacaatgcatttggttcgtcttatgacatcgtgggctgttgtttgt 121 ||||||||||| ||||||||||| |||||| | ||||||||||| ||||| ||||| ||| Sbjct: 885 aagaagcaatcgtttacaatgcacttggttaggcttatgacatcatgggcagttgtgtgt 944 Query: 122 gatgtttggttcttggaacctcaatatctcagggaaggggagacagcgatagaatttact 181 ||||| |||| ||||| ||||| ||||| ||||| || || ||||| || |||||| || Sbjct: 945 gatgtatggtacttggggcctcagtatctgagggatggagaaacagcaattgaatttgct 1004 Query: 182 gaaagagtgagggacatgatagctgctcgggctggtcttaagaaggttccatgggatggc 241 |||||||| || ||||||||||||||| | |||||||||||||||||||| ||||| || Sbjct: 1005 gaaagagtaagagacatgatagctgctagagctggtcttaagaaggttccgtgggacggg 1064 Query: 242 tatctgaaacataaccgccctagcccaaaacatactgaggaaaagcagcgcatgtttgct 301 ||||||||||| ||||||||||| || ||||| ||||| || ||||||||||| |||||| Sbjct: 1065 tatctgaaacacaaccgccctagtcccaaacacactgaagagaagcagcgcatctttgct 1124 Query: 302 gaatctgtgttgaggagactagaagaaaactaaatagctatcaatcaactct 353 || ||||||||| ||||||| || |||| ||||| || |||||||||||||| Sbjct: 1125 gactctgtgttgcggagactggaggaaagctaaacagatatcaatcaactct 1176
>gb|AY104024.1| Zea mays PCO092230 mRNA sequence Length = 1569 Score = 285 bits (144), Expect = 8e-74 Identities = 276/320 (86%) Strand = Plus / Plus Query: 2 gctgtatgtccaatagctatcaaatataataaaatatttgttgacgccttctggaatagt 61 ||||||||||||||||||||||| || ||||||||||||||||| ||||| ||||| ||| Sbjct: 876 gctgtatgtccaatagctatcaagtacaataaaatatttgttgatgccttttggaacagt 935 Query: 62 aagaagcaatcttttacaatgcatttggttcgtcttatgacatcgtgggctgttgtttgt 121 ||||||||||||||||||||||| ||||| || || |||||||| ||||||||||| ||| Sbjct: 936 aagaagcaatcttttacaatgcacttggtccggctgatgacatcatgggctgttgtgtgt 995 Query: 122 gatgtttggttcttggaacctcaatatctcagggaaggggagacagcgatagaatttact 181 |||||||||| ||| ||||||||||| ||||| || ||||| || || | |||| || Sbjct: 996 gatgtttggtacttacctcctcaatatctgagggagggagagacggcaattgcatttgct 1055 Query: 182 gaaagagtgagggacatgatagctgctcgggctggtcttaagaaggttccatgggatggc 241 || ||||| |||||||||||||||||| | ||||| || ||||||||||| ||||||||| Sbjct: 1056 gagagagtaagggacatgatagctgctagagctggactaaagaaggttccttgggatggc 1115 Query: 242 tatctgaaacataaccgccctagcccaaaacatactgaggaaaagcagcgcatgtttgct 301 ||||||||||| ||||| ||||| || ||||| ||||| || || || ||||| ||||| Sbjct: 1116 tatctgaaacacaaccgtcctagtcccaaacacactgaagagaaacaacgcatatttgcc 1175 Query: 302 gaatctgtgttgaggagact 321 |||||||| |||| |||||| Sbjct: 1176 gaatctgtcttgatgagact 1195 Score = 44.1 bits (22), Expect = 0.50 Identities = 28/30 (93%) Strand = Plus / Plus Query: 439 tgaccaccgcagttttgctgtaaatttgtt 468 |||||||| |||||||| |||||||||||| Sbjct: 1315 tgaccacctcagttttgttgtaaatttgtt 1344
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 107 bits (54), Expect = 4e-20 Identities = 63/66 (95%) Strand = Plus / Minus Query: 2 gctgtatgtccaatagctatcaaatataataaaatatttgttgacgccttctggaatagt 61 |||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||| Sbjct: 20755381 gctgtatgcccaatagctatcaaatacaataaaatatttgttgatgccttctggaatagt 20755322 Query: 62 aagaag 67 |||||| Sbjct: 20755321 aagaag 20755316 Score = 101 bits (51), Expect = 2e-18 Identities = 84/95 (88%) Strand = Plus / Minus Query: 185 agagtgagggacatgatagctgctcgggctggtcttaagaaggttccatgggatggctat 244 ||||| || ||||||||||||||| | |||||||||||||||||||| ||||| || ||| Sbjct: 20755030 agagtaagagacatgatagctgctagagctggtcttaagaaggttccgtgggacgggtat 20754971 Query: 245 ctgaaacataaccgccctagcccaaaacatactga 279 |||||||| ||||||||||| || ||||| ||||| Sbjct: 20754970 ctgaaacacaaccgccctagtcccaaacacactga 20754936 Score = 95.6 bits (48), Expect = 2e-16 Identities = 102/120 (85%) Strand = Plus / Minus Query: 67 gcaatcttttacaatgcatttggttcgtcttatgacatcgtgggctgttgtttgtgatgt 126 |||||| ||||||||||| |||||| | ||||||||||| ||||| ||||| |||||||| Sbjct: 20755226 gcaatcgtttacaatgcacttggttaggcttatgacatcatgggcagttgtgtgtgatgt 20755167 Query: 127 ttggttcttggaacctcaatatctcagggaaggggagacagcgatagaatttactgaaag 186 |||| |||||| ||||| ||||| ||||| || || ||||| || |||||| ||||||| Sbjct: 20755166 atggtacttggagcctcagtatctgagggatggagaaacagcaattgaatttgctgaaag 20755107 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Minus Query: 286 gcagcgcatgtttgctgaatctgtgttgaggagactagaagaaaactaaatagctatcaa 345 ||||||||| |||||||| ||||||||| ||||||| || |||| ||||| || |||||| Sbjct: 20754821 gcagcgcatctttgctgactctgtgttgcggagactggaggaaagctaaacagatatcaa 20754762 Query: 346 tcaactct 353 |||||||| Sbjct: 20754761 tcaactct 20754754 Score = 65.9 bits (33), Expect = 1e-07 Identities = 52/57 (91%), Gaps = 1/57 (1%) Strand = Plus / Minus Query: 430 atgtggaaatgaccaccgcagttttgctgtaaatttgtttgcagtttgacagaatca 486 |||||||||| ||||| ||||||||| |||||||| |||||||| |||||||||||| Sbjct: 20754694 atgtggaaattaccactgcagttttgttgtaaatt-gtttgcagcttgacagaatca 20754639
>dbj|AP004674.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0681F05 Length = 144741 Score = 107 bits (54), Expect = 4e-20 Identities = 63/66 (95%) Strand = Plus / Minus Query: 2 gctgtatgtccaatagctatcaaatataataaaatatttgttgacgccttctggaatagt 61 |||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||| Sbjct: 108131 gctgtatgcccaatagctatcaaatacaataaaatatttgttgatgccttctggaatagt 108072 Query: 62 aagaag 67 |||||| Sbjct: 108071 aagaag 108066 Score = 101 bits (51), Expect = 2e-18 Identities = 84/95 (88%) Strand = Plus / Minus Query: 185 agagtgagggacatgatagctgctcgggctggtcttaagaaggttccatgggatggctat 244 ||||| || ||||||||||||||| | |||||||||||||||||||| ||||| || ||| Sbjct: 107780 agagtaagagacatgatagctgctagagctggtcttaagaaggttccgtgggacgggtat 107721 Query: 245 ctgaaacataaccgccctagcccaaaacatactga 279 |||||||| ||||||||||| || ||||| ||||| Sbjct: 107720 ctgaaacacaaccgccctagtcccaaacacactga 107686 Score = 95.6 bits (48), Expect = 2e-16 Identities = 102/120 (85%) Strand = Plus / Minus Query: 67 gcaatcttttacaatgcatttggttcgtcttatgacatcgtgggctgttgtttgtgatgt 126 |||||| ||||||||||| |||||| | ||||||||||| ||||| ||||| |||||||| Sbjct: 107976 gcaatcgtttacaatgcacttggttaggcttatgacatcatgggcagttgtgtgtgatgt 107917 Query: 127 ttggttcttggaacctcaatatctcagggaaggggagacagcgatagaatttactgaaag 186 |||| |||||| ||||| ||||| ||||| || || ||||| || |||||| ||||||| Sbjct: 107916 atggtacttggagcctcagtatctgagggatggagaaacagcaattgaatttgctgaaag 107857 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Minus Query: 286 gcagcgcatgtttgctgaatctgtgttgaggagactagaagaaaactaaatagctatcaa 345 ||||||||| |||||||| ||||||||| ||||||| || |||| ||||| || |||||| Sbjct: 107571 gcagcgcatctttgctgactctgtgttgcggagactggaggaaagctaaacagatatcaa 107512 Query: 346 tcaactct 353 |||||||| Sbjct: 107511 tcaactct 107504 Score = 65.9 bits (33), Expect = 1e-07 Identities = 52/57 (91%), Gaps = 1/57 (1%) Strand = Plus / Minus Query: 430 atgtggaaatgaccaccgcagttttgctgtaaatttgtttgcagtttgacagaatca 486 |||||||||| ||||| ||||||||| |||||||| |||||||| |||||||||||| Sbjct: 107444 atgtggaaattaccactgcagttttgttgtaaatt-gtttgcagcttgacagaatca 107389
>gb|AY107755.1| Zea mays PCO092229 mRNA sequence Length = 1458 Score = 105 bits (53), Expect = 2e-19 Identities = 80/89 (89%) Strand = Plus / Plus Query: 185 agagtgagggacatgatagctgctcgggctggtcttaagaaggttccatgggatggctat 244 ||||| |||||||||||||| ||| | ||||||||||||||||| || |||||||||||| Sbjct: 870 agagtaagggacatgatagcagctagagctggtcttaagaaggtcccgtgggatggctat 929 Query: 245 ctgaaacataaccgccctagcccaaaaca 273 |||||||| ||||||||||| || ||||| Sbjct: 930 ctgaaacacaaccgccctagtcccaaaca 958 Score = 93.7 bits (47), Expect = 6e-16 Identities = 86/99 (86%) Strand = Plus / Plus Query: 67 gcaatcttttacaatgcatttggttcgtcttatgacatcgtgggctgttgtttgtgatgt 126 |||||||||||| ||||| ||||| || | |||||||| ||||||||||| |||||||| Sbjct: 642 gcaatcttttacgatgcacttggtccgattgatgacatcatgggctgttgtgtgtgatgt 701 Query: 127 ttggttcttggaacctcaatatctcagggaaggggagac 165 ||||| |||||| ||||||||||| ||||| || ||||| Sbjct: 702 ttggtacttggagcctcaatatctgagggagggagagac 740 Score = 91.7 bits (46), Expect = 2e-15 Identities = 61/66 (92%) Strand = Plus / Plus Query: 2 gctgtatgtccaatagctatcaaatataataaaatatttgttgacgccttctggaatagt 61 ||||| |||||||||||||||||||| ||||||||||||||||| ||||| ||||| ||| Sbjct: 493 gctgtctgtccaatagctatcaaatacaataaaatatttgttgatgccttttggaacagt 552 Query: 62 aagaag 67 |||||| Sbjct: 553 aagaag 558 Score = 42.1 bits (21), Expect = 2.0 Identities = 33/37 (89%) Strand = Plus / Plus Query: 448 cagttttgctgtaaatttgtttgcagtttgacagaat 484 |||||||| |||||||||||| | | ||||||||||| Sbjct: 1212 cagttttgttgtaaatttgttagaaatttgacagaat 1248
>gb|AY020501.1| Oryza sativa microsatellite MRG2826 containing (GA)X21, closest to marker C1467, genomic sequence Length = 242 Score = 79.8 bits (40), Expect = 9e-12 Identities = 61/68 (89%) Strand = Plus / Minus Query: 212 gctggtcttaagaaggttccatgggatggctatctgaaacataaccgccctagcccaaaa 271 |||||||||||||||||||| ||||| || ||||||||||| ||||||||||| || ||| Sbjct: 240 gctggtcttaagaaggttccgtgggacgggtatctgaaacacaaccgccctagtcccaaa 181 Query: 272 catactga 279 || ||||| Sbjct: 180 cacactga 173
>ref|NM_125455.2| Arabidopsis thaliana acyltransferase AT5G60620 mRNA, complete cds Length = 1323 Score = 77.8 bits (39), Expect = 4e-11 Identities = 114/139 (82%) Strand = Plus / Plus Query: 3 ctgtatgtccaatagctatcaaatataataaaatatttgttgacgccttctggaatagta 62 |||| |||||||| || || ||||| || || || ||||||||||||||||||||||| | Sbjct: 850 ctgtttgtccaattgcaattaaatacaacaagatttttgttgacgccttctggaatagca 909 Query: 63 agaagcaatcttttacaatgcatttggttcgtcttatgacatcgtgggctgttgtttgtg 122 || ||||| ||||| ||||| ||| | | || |||||||| ||||||||||| |||| Sbjct: 910 gaaaacaatcatttactatgcacttgctgcaactcatgacatcatgggctgttgtatgtg 969 Query: 123 atgtttggttcttggaacc 141 | || |||| ||||||||| Sbjct: 970 aagtgtggtacttggaacc 988
>gb|BT006033.1| Arabidopsis thaliana clone U51225 unknown protein (At5g60620) mRNA, complete cds Length = 1162 Score = 77.8 bits (39), Expect = 4e-11 Identities = 114/139 (82%) Strand = Plus / Plus Query: 3 ctgtatgtccaatagctatcaaatataataaaatatttgttgacgccttctggaatagta 62 |||| |||||||| || || ||||| || || || ||||||||||||||||||||||| | Sbjct: 800 ctgtttgtccaattgcaattaaatacaacaagatttttgttgacgccttctggaatagca 859 Query: 63 agaagcaatcttttacaatgcatttggttcgtcttatgacatcgtgggctgttgtttgtg 122 || ||||| ||||| ||||| ||| | | || |||||||| ||||||||||| |||| Sbjct: 860 gaaaacaatcatttactatgcacttgctgcaactcatgacatcatgggctgttgtatgtg 919 Query: 123 atgtttggttcttggaacc 141 | || |||| ||||||||| Sbjct: 920 aagtgtggtacttggaacc 938
>dbj|AK118869.1| Arabidopsis thaliana At5g60620 mRNA for unknown protein, complete cds, clone: RAFL21-19-N13 Length = 1324 Score = 77.8 bits (39), Expect = 4e-11 Identities = 114/139 (82%) Strand = Plus / Plus Query: 3 ctgtatgtccaatagctatcaaatataataaaatatttgttgacgccttctggaatagta 62 |||| |||||||| || || ||||| || || || ||||||||||||||||||||||| | Sbjct: 850 ctgtttgtccaattgcaattaaatacaacaagatttttgttgacgccttctggaatagca 909 Query: 63 agaagcaatcttttacaatgcatttggttcgtcttatgacatcgtgggctgttgtttgtg 122 || ||||| ||||| ||||| ||| | | || |||||||| ||||||||||| |||| Sbjct: 910 gaaaacaatcatttactatgcacttgctgcaactcatgacatcatgggctgttgtatgtg 969 Query: 123 atgtttggttcttggaacc 141 | || |||| ||||||||| Sbjct: 970 aagtgtggtacttggaacc 988
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 69.9 bits (35), Expect = 9e-09 Identities = 50/55 (90%) Strand = Plus / Minus Query: 90 ttcgtcttatgacatcgtgggctgttgtttgtgatgtttggttcttggaacctca 144 |||| ||||||||||| |||| |||||| |||||||||||||||||||| ||||| Sbjct: 14220991 ttcgacttatgacatcatggggtgttgtgtgtgatgtttggttcttggaccctca 14220937 Score = 69.9 bits (35), Expect = 9e-09 Identities = 65/75 (86%) Strand = Plus / Minus Query: 188 gtgagggacatgatagctgctcgggctggtcttaagaaggttccatgggatggctatctg 247 |||||||| ||||| ||||||| || ||| ||||||||||||||||||||||| || || Sbjct: 14220835 gtgagggatatgatcgctgctcaggttggccttaagaaggttccatgggatggatacatg 14220776 Query: 248 aaacataaccgccct 262 ||||| || |||||| Sbjct: 14220775 aaacacaatcgccct 14220761 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Minus Query: 24 aatataataaaatatttgttga 45 |||||||||||||||||||||| Sbjct: 6235069 aatataataaaatatttgttga 6235048 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 4 tgtatgtccaatagctatcaaata 27 |||||| ||||||||||||||||| Sbjct: 14221175 tgtatgcccaatagctatcaaata 14221152
>emb|BX830392.1|CNS09ZYY Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB77ZH03 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1276 Score = 69.9 bits (35), Expect = 9e-09 Identities = 113/139 (81%) Strand = Plus / Plus Query: 3 ctgtatgtccaatagctatcaaatataataaaatatttgttgacgccttctggaatagta 62 |||| |||||||| || || ||||| || || || ||||||||||||||||||||||| | Sbjct: 840 ctgtttgtccaattgcaattaaatacaacaagatttttgttgacgccttctggaatagca 899 Query: 63 agaagcaatcttttacaatgcatttggttcgtcttatgacatcgtgggctgttgtttgtg 122 || ||||| ||||| ||| | ||| | | || |||||||| ||||||||||| |||| Sbjct: 900 gaaaacaatcatttactatgaacttgctgcaactcatgacatcatgggctgttgtatgtg 959 Query: 123 atgtttggttcttggaacc 141 | || |||| ||||||||| Sbjct: 960 aagtgtggtacttggaacc 978
>dbj|AP004856.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1570_H12 Length = 129767 Score = 69.9 bits (35), Expect = 9e-09 Identities = 50/55 (90%) Strand = Plus / Minus Query: 90 ttcgtcttatgacatcgtgggctgttgtttgtgatgtttggttcttggaacctca 144 |||| ||||||||||| |||| |||||| |||||||||||||||||||| ||||| Sbjct: 121011 ttcgacttatgacatcatggggtgttgtgtgtgatgtttggttcttggaccctca 120957 Score = 69.9 bits (35), Expect = 9e-09 Identities = 65/75 (86%) Strand = Plus / Minus Query: 188 gtgagggacatgatagctgctcgggctggtcttaagaaggttccatgggatggctatctg 247 |||||||| ||||| ||||||| || ||| ||||||||||||||||||||||| || || Sbjct: 120855 gtgagggatatgatcgctgctcaggttggccttaagaaggttccatgggatggatacatg 120796 Query: 248 aaacataaccgccct 262 ||||| || |||||| Sbjct: 120795 aaacacaatcgccct 120781 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 4 tgtatgtccaatagctatcaaata 27 |||||| ||||||||||||||||| Sbjct: 121195 tgtatgcccaatagctatcaaata 121172
>dbj|AP004151.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1008_E02 Length = 125860 Score = 69.9 bits (35), Expect = 9e-09 Identities = 50/55 (90%) Strand = Plus / Minus Query: 90 ttcgtcttatgacatcgtgggctgttgtttgtgatgtttggttcttggaacctca 144 |||| ||||||||||| |||| |||||| |||||||||||||||||||| ||||| Sbjct: 26141 ttcgacttatgacatcatggggtgttgtgtgtgatgtttggttcttggaccctca 26087 Score = 69.9 bits (35), Expect = 9e-09 Identities = 65/75 (86%) Strand = Plus / Minus Query: 188 gtgagggacatgatagctgctcgggctggtcttaagaaggttccatgggatggctatctg 247 |||||||| ||||| ||||||| || ||| ||||||||||||||||||||||| || || Sbjct: 25985 gtgagggatatgatcgctgctcaggttggccttaagaaggttccatgggatggatacatg 25926 Query: 248 aaacataaccgccct 262 ||||| || |||||| Sbjct: 25925 aaacacaatcgccct 25911 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 4 tgtatgtccaatagctatcaaata 27 |||||| ||||||||||||||||| Sbjct: 26325 tgtatgcccaatagctatcaaata 26302
>gb|AC159873.11| Medicago truncatula clone mth2-46p15, complete sequence Length = 129948 Score = 65.9 bits (33), Expect = 1e-07 Identities = 39/41 (95%) Strand = Plus / Plus Query: 98 atgacatcgtgggctgttgtttgtgatgtttggttcttgga 138 |||||||| ||||||||||||||||||||||||| |||||| Sbjct: 5444 atgacatcttgggctgttgtttgtgatgtttggtacttgga 5484 Score = 54.0 bits (27), Expect = 5e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 207 ctcgggctggtcttaagaaggttccatgggatggctatctgaa 249 |||| ||||| |||||||||||||| |||||||| |||||||| Sbjct: 5643 ctcgtgctggccttaagaaggttccttgggatggatatctgaa 5685
>gb|BT013293.1| Lycopersicon esculentum clone 134908R, mRNA sequence Length = 1444 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Plus Query: 98 atgacatcgtgggctgttgtttgtgatgtttggttcttggaacctca 144 |||||||| ||||||||||| ||||||||||||| | |||||||||| Sbjct: 979 atgacatcttgggctgttgtctgtgatgtttggtacctggaacctca 1025
>dbj|AB005246.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUP24 Length = 77999 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Plus Query: 3 ctgtatgtccaatagctatcaaatataataaaatatttgttgacgccttctggaatag 60 |||| |||||||| || || ||||| || || || ||||||||||||||||||||||| Sbjct: 12089 ctgtttgtccaattgcaattaaatacaacaagatttttgttgacgccttctggaatag 12146 Score = 48.1 bits (24), Expect = 0.032 Identities = 39/44 (88%) Strand = Plus / Plus Query: 98 atgacatcgtgggctgttgtttgtgatgtttggttcttggaacc 141 |||||||| ||||||||||| ||||| || |||| ||||||||| Sbjct: 12317 atgacatcatgggctgttgtatgtgaagtgtggtacttggaacc 12360
>ref|XM_639141.1| Dictyostelium discoideum hypothetical protein (DDB0217574), partial mRNA Length = 1467 Score = 44.1 bits (22), Expect = 0.50 Identities = 31/34 (91%) Strand = Plus / Plus Query: 98 atgacatcgtgggctgttgtttgtgatgtttggt 131 |||||||| ||||| |||||||||||||||||| Sbjct: 1060 atgacatcatgggcatttgtttgtgatgtttggt 1093
>gb|AC116956.2| Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence Length = 266544 Score = 44.1 bits (22), Expect = 0.50 Identities = 31/34 (91%) Strand = Plus / Minus Query: 98 atgacatcgtgggctgttgtttgtgatgtttggt 131 |||||||| ||||| |||||||||||||||||| Sbjct: 233676 atgacatcatgggcatttgtttgtgatgtttggt 233643
>dbj|AP004085.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1267_F10 Length = 162669 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Minus Query: 24 aatataataaaatatttgttga 45 |||||||||||||||||||||| Sbjct: 32456 aatataataaaatatttgttga 32435
>gb|AC162448.10| Mus musculus chromosome 1, clone RP24-405F23, complete sequence Length = 180366 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 24 aatataataaaatatttgttg 44 ||||||||||||||||||||| Sbjct: 89680 aatataataaaatatttgttg 89660
>gb|AC006373.3| Homo sapiens BAC clone RP11-352E12 from 7, complete sequence Length = 87323 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 23 aaatataataaaatatttgtt 43 ||||||||||||||||||||| Sbjct: 71461 aaatataataaaatatttgtt 71481
>gb|AE014830.1| Plasmodium falciparum 3D7 chromosome 10 section 2 of 7 of the complete sequence Length = 250029 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 23 aaatataataaaatatttgtt 43 ||||||||||||||||||||| Sbjct: 117847 aaatataataaaatatttgtt 117827
>gb|AC098848.7| Homo sapiens chromosome 18, clone RP11-839G9, complete sequence Length = 189315 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 23 aaatataataaaatatttgtt 43 ||||||||||||||||||||| Sbjct: 122165 aaatataataaaatatttgtt 122185
>gb|AC018517.7| Homo sapiens, clone RP11-115N12, complete sequence Length = 180917 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 13 aatagctatcaaatataataaaata 37 ||||||||| ||||||||||||||| Sbjct: 97133 aatagctatgaaatataataaaata 97109
>gb|AC142416.3| Homo sapiens fosmid clone XXFOS-88136C3 from 4, complete sequence Length = 23490 Score = 42.1 bits (21), Expect = 2.0 Identities = 28/29 (96%), Gaps = 1/29 (3%) Strand = Plus / Minus Query: 10 tccaatagctatcaaatataataaaatat 38 ||||||||||| ||||||||||||||||| Sbjct: 9060 tccaatagcta-caaatataataaaatat 9033
>gb|AC093912.2| Homo sapiens BAC clone RP11-766E1 from 2, complete sequence Length = 194167 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 20 atcaaatataataaaatattt 40 ||||||||||||||||||||| Sbjct: 119765 atcaaatataataaaatattt 119745
>gb|AC121538.11| Mus musculus chromosome 1, clone RP23-125I14, complete sequence Length = 190423 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 23 aaatataataaaatatttgtt 43 ||||||||||||||||||||| Sbjct: 145720 aaatataataaaatatttgtt 145700
>ref|XM_517857.1| PREDICTED: Pan troglodytes similar to KIAA0433 protein (LOC461975), mRNA Length = 893 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 tcaaatataataaaatattt 40 |||||||||||||||||||| Sbjct: 865 tcaaatataataaaatattt 884
>gb|AE017344.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 4, complete sequence Length = 1783081 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 24 aatataataaaatatttgtt 43 |||||||||||||||||||| Sbjct: 1002993 aatataataaaatatttgtt 1002974
>gb|AC004225.1| Homo sapiens chromosome 5, Pac clone 61c2 (LBNL H139), complete sequence Length = 103916 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 117 tttgtgatgtttggttcttggaac 140 |||||||||| ||||||||||||| Sbjct: 1409 tttgtgatgtctggttcttggaac 1432
>gb|AC146504.2| Danio rerio clone CH211-86L16, complete sequence Length = 181948 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 aatataataaaatatttgtt 43 |||||||||||||||||||| Sbjct: 113243 aatataataaaatatttgtt 113262
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 ggacatgatagctgctcggg 212 |||||||||||||||||||| Sbjct: 31435835 ggacatgatagctgctcggg 31435816
>gb|DQ167394.1| Triticum aestivum AFLP-derived marker P-ACG/M-GCG-339 genomic sequence Length = 339 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 actagaagaaaactaaatag 338 |||||||||||||||||||| Sbjct: 244 actagaagaaaactaaatag 263
>ref|XM_670831.1| Plasmodium berghei strain ANKA hypothetical protein (PB000437.00.0) partial mRNA Length = 939 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 tatcaaatataataaaatat 38 |||||||||||||||||||| Sbjct: 561 tatcaaatataataaaatat 580
>emb|AL390962.11| Human DNA sequence from clone RP11-84G24 on chromosome 9 Contains the 5' end of a novel gene, complete sequence Length = 169670 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 aatataataaaatatttgtt 43 |||||||||||||||||||| Sbjct: 43722 aatataataaaatatttgtt 43741
>emb|AL359835.10| Human DNA sequence from clone RP11-191J5 on chromosome 1q31.1-31.3 Contains STSs and GSSs, complete sequence Length = 172747 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 aaatataataaaatatttgt 42 |||||||||||||||||||| Sbjct: 109612 aaatataataaaatatttgt 109593
>emb|AL356513.15| Human DNA sequence from clone RP11-108A15 on chromosome X Contains the 3' end of a novel gene similar to Chic1 (LOC349423)and a selenophosphate synthetase (SPS) pseudogene, complete sequence Length = 180619 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 306 ctgtgttgaggagactagaagaaa 329 |||||||||||||||| ||||||| Sbjct: 123601 ctgtgttgaggagacttgaagaaa 123578
>emb|AL157776.15| Human DNA sequence from clone RP11-68J15 on chromosome 6 Contains part of the NUP153 gene for nucleoporin 153kD, complete sequence Length = 70043 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 203 gctgctcgggctggtcttaa 222 |||||||||||||||||||| Sbjct: 8244 gctgctcgggctggtcttaa 8263
>emb|AL133349.7| Human DNA sequence from clone RP1-140L23 on chromosome 11p13-14.1 Contains GSSs, complete sequence Length = 65166 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 21 tcaaatataataaaatatttgttg 44 ||||||| |||||||||||||||| Sbjct: 42648 tcaaataaaataaaatatttgttg 42625
>emb|AL096829.17|HSJ595K12 Human DNA sequence from clone RP4-595K12 on chromosome 1p31.2-31.3 Contains the 5' end of a novel gene (MGC34032) and a ribosomal protein L29 (RPL29) pseudogene, complete sequence Length = 135983 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 tcaaatataataaaatattt 40 |||||||||||||||||||| Sbjct: 120005 tcaaatataataaaatattt 119986
>emb|AL080285.6|HSJ344J20 Human DNA sequence from clone RP3-344J20 on chromosome 6q16.1-16.3 Contains an arginase, type II (ARG2) pseudogene and a peroxiredoxin 2 (thiol-specific antioxidant 1, natural killer-enhancing factor B, thioredoxin-dependent peroxide reductase 1, thiol-specific antioxidant 1, natural killer-enhancing factor)(PRDX2)(PRP, TSA, NKEFB, TDPX1) pseudogene, complete sequence Length = 170803 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 218 cttaagaaggttccatggga 237 |||||||||||||||||||| Sbjct: 144426 cttaagaaggttccatggga 144445
>gb|AC099043.6| Oryza sativa chromosome 3 BAC OSJNBa0079B15 genomic sequence, complete sequence Length = 159091 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 ggacatgatagctgctcggg 212 |||||||||||||||||||| Sbjct: 59965 ggacatgatagctgctcggg 59984
>ref|XM_775615.1| PREDICTED: Strongylocentrotus purpuratus similar to Beta-1,3-galactosyltransferase 1 (Beta-1,3-GalTase 1) (Beta3GalT1) (UDP-galactose:beta-N-acetyl-glucosamine-beta-1, 3-galactosyltransferase 1) (UDP-Gal:betaGlcNAc beta 1,3-galactosyltranferase-I) (LOC575198), mRNA Length = 2736 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 305 tctgtgttgaggagactagaagaa 328 ||||||||||||| |||||||||| Sbjct: 2224 tctgtgttgaggaaactagaagaa 2247
>emb|CR936677.1| Homo sapiens mRNA; cDNA DKFZp686J0423 (from clone DKFZp686J0423) Length = 3358 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 tcaaatataataaaatattt 40 |||||||||||||||||||| Sbjct: 1490 tcaaatataataaaatattt 1509
>emb|CR524481.5| Zebrafish DNA sequence from clone CH211-81C11 in linkage group 22, complete sequence Length = 191642 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 aatataataaaatatttgtt 43 |||||||||||||||||||| Sbjct: 113182 aatataataaaatatttgtt 113201
>dbj|AK090847.1| Homo sapiens cDNA FLJ33528 fis, clone BRAMY2007110, highly similar to LYSOSOMAL PRO-X CARBOXYPEPTIDASE PRECURSOR (EC 3.4.16.2) Length = 2521 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 20 atcaaatataataaaatatt 39 |||||||||||||||||||| Sbjct: 316 atcaaatataataaaatatt 297
>gb|AC109461.3| Homo sapiens chromosome 5 clone RP11-269G2, complete sequence Length = 89234 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 117 tttgtgatgtttggttcttggaac 140 |||||||||| ||||||||||||| Sbjct: 25462 tttgtgatgtctggttcttggaac 25439
>gb|AC083902.5| Homo sapiens BAC clone RP11-766F14 from 4, complete sequence Length = 204860 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 25 atataataaaatatttgttg 44 |||||||||||||||||||| Sbjct: 118489 atataataaaatatttgttg 118508
>gb|AC008447.8| Homo sapiens chromosome 5 clone CTC-340K5, complete sequence Length = 159922 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 tcaaatataataaaatattt 40 |||||||||||||||||||| Sbjct: 32852 tcaaatataataaaatattt 32833
>emb|BX323822.7| Zebrafish DNA sequence from clone DKEY-46C2 in linkage group 19, complete sequence Length = 204327 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 449 agttttgctgtaaatttgtttgca 472 ||||||| |||||||||||||||| Sbjct: 55746 agttttgatgtaaatttgtttgca 55723
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 ggacatgatagctgctcggg 212 |||||||||||||||||||| Sbjct: 31526351 ggacatgatagctgctcggg 31526332
>gb|AC121761.4| Homo sapiens 12 BAC RP11-585P4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 170917 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 gaaagagtgagggacatgat 201 |||||||||||||||||||| Sbjct: 75898 gaaagagtgagggacatgat 75879
>gb|AC018733.8| Homo sapiens BAC clone RP11-337H6 from 2, complete sequence Length = 163117 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 25 atataataaaatatttgttg 44 |||||||||||||||||||| Sbjct: 111441 atataataaaatatttgttg 111460
>emb|BX276082.6| Zebrafish DNA sequence from clone DKEY-259B21 in linkage group 3, complete sequence Length = 75111 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 tataataaaatatttgttga 45 |||||||||||||||||||| Sbjct: 28739 tataataaaatatttgttga 28720
>gb|AC133208.3| Mus musculus BAC clone RP23-17O6 from chromosome unknown, complete sequence Length = 239189 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 381 ccctttggttgccttgtaat 400 |||||||||||||||||||| Sbjct: 18750 ccctttggttgccttgtaat 18731
>gb|AC027665.4|AC027665 Genomic sequence for Arabidopsis thaliana BAC F5M15 from chromosome I, complete sequence Length = 99231 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 326 gaaaactaaatagctatcaatcaa 349 ||||| |||||||||||||||||| Sbjct: 61619 gaaaattaaatagctatcaatcaa 61596
>gb|AC008509.5|AC008509 Homo sapiens chromosome 5 clone CTC-449I11, complete sequence Length = 189456 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 tcaaatataataaaatattt 40 |||||||||||||||||||| Sbjct: 75717 tcaaatataataaaatattt 75736
>emb|CR450686.20| Zebrafish DNA sequence from clone DKEY-182G1 in linkage group 19, complete sequence Length = 171861 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 466 gtttgcagtttgacagaatc 485 |||||||||||||||||||| Sbjct: 120409 gtttgcagtttgacagaatc 120390
>emb|BX276097.12| Zebrafish DNA sequence from clone DKEY-97C6 in linkage group 20, complete sequence Length = 128871 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 23 aaatataataaaatatttgt 42 |||||||||||||||||||| Sbjct: 48513 aaatataataaaatatttgt 48532
>dbj|AP001646.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-718B12, complete sequence Length = 182329 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 20 atcaaatataataaaatatt 39 |||||||||||||||||||| Sbjct: 79418 atcaaatataataaaatatt 79437
>emb|CT571256.7| Mouse DNA sequence from clone RP24-135B13 on chromosome 13, complete sequence Length = 183340 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 tcaaatataataaaatattt 40 |||||||||||||||||||| Sbjct: 118164 tcaaatataataaaatattt 118183
>emb|BX005190.8| Mouse DNA sequence from clone RP23-383A22 on chromosome X, complete sequence Length = 212955 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 381 ccctttggttgccttgtaat 400 |||||||||||||||||||| Sbjct: 180842 ccctttggttgccttgtaat 180823
>gb|AC140407.5| Mus musculus BAC clone RP23-142K9 from chromosome unknown, complete sequence Length = 193404 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 381 ccctttggttgccttgtaat 400 |||||||||||||||||||| Sbjct: 158623 ccctttggttgccttgtaat 158604
>dbj|AP004477.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT12K07, TM0011b, complete sequence Length = 44662 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 20 atcaaatataataaaatatttgtt 43 ||||||| |||||||||||||||| Sbjct: 12245 atcaaatgtaataaaatatttgtt 12222
>emb|AL713989.20| Mouse DNA sequence from clone RP23-5I4 on chromosome 5, complete sequence Length = 215210 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 24 aatataataaaatatttgtt 43 |||||||||||||||||||| Sbjct: 61163 aatataataaaatatttgtt 61144 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,779,519 Number of Sequences: 3902068 Number of extensions: 5779519 Number of successful extensions: 148141 Number of sequences better than 10.0: 66 Number of HSP's better than 10.0 without gapping: 66 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 147775 Number of HSP's gapped (non-prelim): 365 length of query: 572 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 549 effective length of database: 17,143,297,704 effective search space: 9411670439496 effective search space used: 9411670439496 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)