ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags39h22
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_187458.1| Oryza sativa (japonica cultivar-group), predic... 109 1e-20
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 109 1e-20
3gb|AC135205.4| Oryza sativa (japonica cultivar-group) chromosome... 109 1e-20
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 109 1e-20
5dbj|AK065578.1| Oryza sativa (japonica cultivar-group) cDNA clon... 109 1e-20
6gb|AY105790.1| Zea mays PCO079761 mRNA sequence 50 0.010
7gb|BT018387.1| Zea mays clone EL01N0313G10.d mRNA sequence 46 0.15
8gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete ge... 44 0.61
9gb|AC105748.2| Homo sapiens chromosome 3 clone RP11-532I6, compl... 42 2.4
10gb|AE015451.1| Pseudomonas putida KT2440 complete genome 42 2.4
11gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome 40 9.5
12gb|AC115360.6| Mus musculus BAC clone RP23-191N22 from chromosom... 40 9.5
13gb|AC124552.3| Mus musculus BAC clone RP23-222M11 from chromosom... 40 9.5
14gb|DQ153984.1| Gossypium arboreum auxin response factor 2 (ARF2)... 40 9.5
15gb|BC053925.1| Mus musculus cDNA clone IMAGE:6311688, partial cds 40 9.5
16emb|AL731601.3|OSJN00245 Oryza sativa genomic DNA, chromosome 4,... 40 9.5
17gb|BC068307.1| Mus musculus lysyl oxidase-like 4, mRNA (cDNA clo... 40 9.5
18gb|AC073175.4| Homo sapiens chromosome 05 clone RP11-319P13, com... 40 9.5
19dbj|AK031666.1| Mus musculus 13 days embryo male testis cDNA, RI... 40 9.5
20dbj|AK078840.1| Mus musculus adult male colon cDNA, RIKEN full-l... 40 9.5
21dbj|AK014773.1| Mus musculus 0 day neonate head cDNA, RIKEN full... 40 9.5
22dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.5
23ref|NM_053083.2| Mus musculus lysyl oxidase-like 4 (Loxl4), mRNA 40 9.5
24gb|AC010227.5|AC010227 Homo sapiens chromosome 5 clone CTC-289C9... 40 9.5
25gb|AC008893.4|AC008893 Homo sapiens chromosome 5 clone CTD-2228J... 40 9.5
26gb|AC101774.6| Mus musculus chromosome 19, clone RP24-113J17, co... 40 9.5
27emb|AL672266.9| Mouse DNA sequence from clone RP23-342A10 on chr... 40 9.5 
>ref|NM_187458.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 975

 Score =  109 bits (55), Expect = 1e-20
 Identities = 133/159 (83%)
 Strand = Plus / Plus

                                                                       
Query: 268 accgttcaagatccccatacagttacagaaggcggaggtcatgctcccatgaccgttatg 327
           ||||||||||||| |||||| ||||||||||   ||||||||| ||| |||||| || ||
Sbjct: 659 accgttcaagatctccataccgttacagaagagagaggtcatgttcctatgaccattctg 718

                                                                       
Query: 328 tttcagcatactacagcaggcgctattctccaaggaacagaagacggagttactctcgca 387
           ||||| ||||||| || ||| |||||||||||||    ||| ||||||| || |||||||
Sbjct: 719 tttcaccatactatagaaggtgctattctccaagtgctagaggacggagctattctcgca 778

                                                  
Query: 388 gcgtatcaccacgcaggagctactcccgtagctgctccc 426
           | |||||||| |  ||||||||||||| |||||| ||||
Sbjct: 779 gtgtatcacctcagaggagctactcccatagctgttccc 817



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 108/134 (80%)
 Strand = Plus / Plus

                                                                       
Query: 31  aacgttcttattctccttatcgcagaggacgatcatactctcgtcatgacaggcatagat 90
           |||| ||||||||||||||| | ||| | |||||||| ||||   |  ||||||  ||||
Sbjct: 431 aacggtcttattctccttatggtagaaggcgatcatattctccatacaacaggcgaagat 490

                                                                       
Query: 91  catactccccctatggaaggaggccatcctactccccctatgaaaggaggccatcctact 150
           |||||||||||||||  ||| |   ||||||||| ||  |||||||||| |  |||||||
Sbjct: 491 catactccccctatgagaggcgtagatcctactctccacatgaaaggagacagtcctact 550

                         
Query: 151 ctccctatggcaga 164
           |||| |||||||||
Sbjct: 551 ctccgtatggcaga 564



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 62/73 (84%), Gaps = 1/73 (1%)
 Strand = Plus / Plus

                                                                       
Query: 513 aagaggcgttctagagaaagctatgcgcacagcccgcagttcatgctcgaggtccgtctc 572
           ||||||| |||||| || |||||  | ||||||| ||||||| | ||| ||||| |||||
Sbjct: 898 aagaggcattctagggagagctactctcacagcc-gcagttcctactcaaggtctgtctc 956

                        
Query: 573 cagggagcgctca 585
           |||||||||||||
Sbjct: 957 cagggagcgctca 969
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  109 bits (55), Expect = 1e-20
 Identities = 133/159 (83%)
 Strand = Plus / Minus

                                                                           
Query: 268     accgttcaagatccccatacagttacagaaggcggaggtcatgctcccatgaccgttatg 327
               ||||||||||||| |||||| ||||||||||   ||||||||| ||| |||||| || ||
Sbjct: 8740436 accgttcaagatctccataccgttacagaagagagaggtcatgttcctatgaccattctg 8740377

                                                                           
Query: 328     tttcagcatactacagcaggcgctattctccaaggaacagaagacggagttactctcgca 387
               ||||| ||||||| || ||| |||||||||||||    ||| ||||||| || |||||||
Sbjct: 8740376 tttcaccatactatagaaggtgctattctccaagtgctagaggacggagctattctcgca 8740317

                                                      
Query: 388     gcgtatcaccacgcaggagctactcccgtagctgctccc 426
               | |||||||| |  ||||||||||||| |||||| ||||
Sbjct: 8740316 gtgtatcacctcagaggagctactcccatagctgttccc 8740278



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 108/134 (80%)
 Strand = Plus / Minus

                                                                           
Query: 31      aacgttcttattctccttatcgcagaggacgatcatactctcgtcatgacaggcatagat 90
               |||| ||||||||||||||| | ||| | |||||||| ||||   |  ||||||  ||||
Sbjct: 8740664 aacggtcttattctccttatggtagaaggcgatcatattctccatacaacaggcgaagat 8740605

                                                                           
Query: 91      catactccccctatggaaggaggccatcctactccccctatgaaaggaggccatcctact 150
               |||||||||||||||  ||| |   ||||||||| ||  |||||||||| |  |||||||
Sbjct: 8740604 catactccccctatgagaggcgtagatcctactctccacatgaaaggagacagtcctact 8740545

                             
Query: 151     ctccctatggcaga 164
               |||| |||||||||
Sbjct: 8740544 ctccgtatggcaga 8740531



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 62/73 (84%), Gaps = 1/73 (1%)
 Strand = Plus / Minus

                                                                           
Query: 513     aagaggcgttctagagaaagctatgcgcacagcccgcagttcatgctcgaggtccgtctc 572
               ||||||| |||||| || |||||  | ||||||| ||||||| | ||| ||||| |||||
Sbjct: 8740197 aagaggcattctagggagagctactctcacagcc-gcagttcctactcaaggtctgtctc 8740139

                            
Query: 573     cagggagcgctca 585
               |||||||||||||
Sbjct: 8740138 cagggagcgctca 8740126
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>gb|AC135205.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1012B02,
             complete sequence
          Length = 115270

 Score =  109 bits (55), Expect = 1e-20
 Identities = 133/159 (83%)
 Strand = Plus / Minus

                                                                         
Query: 268   accgttcaagatccccatacagttacagaaggcggaggtcatgctcccatgaccgttatg 327
             ||||||||||||| |||||| ||||||||||   ||||||||| ||| |||||| || ||
Sbjct: 84087 accgttcaagatctccataccgttacagaagagagaggtcatgttcctatgaccattctg 84028

                                                                         
Query: 328   tttcagcatactacagcaggcgctattctccaaggaacagaagacggagttactctcgca 387
             ||||| ||||||| || ||| |||||||||||||    ||| ||||||| || |||||||
Sbjct: 84027 tttcaccatactatagaaggtgctattctccaagtgctagaggacggagctattctcgca 83968

                                                    
Query: 388   gcgtatcaccacgcaggagctactcccgtagctgctccc 426
             | |||||||| |  ||||||||||||| |||||| ||||
Sbjct: 83967 gtgtatcacctcagaggagctactcccatagctgttccc 83929



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 108/134 (80%)
 Strand = Plus / Minus

                                                                         
Query: 31    aacgttcttattctccttatcgcagaggacgatcatactctcgtcatgacaggcatagat 90
             |||| ||||||||||||||| | ||| | |||||||| ||||   |  ||||||  ||||
Sbjct: 84315 aacggtcttattctccttatggtagaaggcgatcatattctccatacaacaggcgaagat 84256

                                                                         
Query: 91    catactccccctatggaaggaggccatcctactccccctatgaaaggaggccatcctact 150
             |||||||||||||||  ||| |   ||||||||| ||  |||||||||| |  |||||||
Sbjct: 84255 catactccccctatgagaggcgtagatcctactctccacatgaaaggagacagtcctact 84196

                           
Query: 151   ctccctatggcaga 164
             |||| |||||||||
Sbjct: 84195 ctccgtatggcaga 84182



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 62/73 (84%), Gaps = 1/73 (1%)
 Strand = Plus / Minus

                                                                         
Query: 513   aagaggcgttctagagaaagctatgcgcacagcccgcagttcatgctcgaggtccgtctc 572
             ||||||| |||||| || |||||  | ||||||| ||||||| | ||| ||||| |||||
Sbjct: 83848 aagaggcattctagggagagctactctcacagcc-gcagttcctactcaaggtctgtctc 83790

                          
Query: 573   cagggagcgctca 585
             |||||||||||||
Sbjct: 83789 cagggagcgctca 83777
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  109 bits (55), Expect = 1e-20
 Identities = 133/159 (83%)
 Strand = Plus / Minus

                                                                           
Query: 268     accgttcaagatccccatacagttacagaaggcggaggtcatgctcccatgaccgttatg 327
               ||||||||||||| |||||| ||||||||||   ||||||||| ||| |||||| || ||
Sbjct: 8738271 accgttcaagatctccataccgttacagaagagagaggtcatgttcctatgaccattctg 8738212

                                                                           
Query: 328     tttcagcatactacagcaggcgctattctccaaggaacagaagacggagttactctcgca 387
               ||||| ||||||| || ||| |||||||||||||    ||| ||||||| || |||||||
Sbjct: 8738211 tttcaccatactatagaaggtgctattctccaagtgctagaggacggagctattctcgca 8738152

                                                      
Query: 388     gcgtatcaccacgcaggagctactcccgtagctgctccc 426
               | |||||||| |  ||||||||||||| |||||| ||||
Sbjct: 8738151 gtgtatcacctcagaggagctactcccatagctgttccc 8738113



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 108/134 (80%)
 Strand = Plus / Minus

                                                                           
Query: 31      aacgttcttattctccttatcgcagaggacgatcatactctcgtcatgacaggcatagat 90
               |||| ||||||||||||||| | ||| | |||||||| ||||   |  ||||||  ||||
Sbjct: 8738499 aacggtcttattctccttatggtagaaggcgatcatattctccatacaacaggcgaagat 8738440

                                                                           
Query: 91      catactccccctatggaaggaggccatcctactccccctatgaaaggaggccatcctact 150
               |||||||||||||||  ||| |   ||||||||| ||  |||||||||| |  |||||||
Sbjct: 8738439 catactccccctatgagaggcgtagatcctactctccacatgaaaggagacagtcctact 8738380

                             
Query: 151     ctccctatggcaga 164
               |||| |||||||||
Sbjct: 8738379 ctccgtatggcaga 8738366



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 62/73 (84%), Gaps = 1/73 (1%)
 Strand = Plus / Minus

                                                                           
Query: 513     aagaggcgttctagagaaagctatgcgcacagcccgcagttcatgctcgaggtccgtctc 572
               ||||||| |||||| || |||||  | ||||||| ||||||| | ||| ||||| |||||
Sbjct: 8738032 aagaggcattctagggagagctactctcacagcc-gcagttcctactcaaggtctgtctc 8737974

                            
Query: 573     cagggagcgctca 585
               |||||||||||||
Sbjct: 8737973 cagggagcgctca 8737961
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>dbj|AK065578.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013026M08, full
            insert sequence
          Length = 1438

 Score =  109 bits (55), Expect = 1e-20
 Identities = 133/159 (83%)
 Strand = Plus / Plus

                                                                        
Query: 268  accgttcaagatccccatacagttacagaaggcggaggtcatgctcccatgaccgttatg 327
            ||||||||||||| |||||| ||||||||||   ||||||||| ||| |||||| || ||
Sbjct: 918  accgttcaagatctccataccgttacagaagagagaggtcatgttcctatgaccattctg 977

                                                                        
Query: 328  tttcagcatactacagcaggcgctattctccaaggaacagaagacggagttactctcgca 387
            ||||| ||||||| || ||| |||||||||||||    ||| ||||||| || |||||||
Sbjct: 978  tttcaccatactatagaaggtgctattctccaagtgctagaggacggagctattctcgca 1037

                                                   
Query: 388  gcgtatcaccacgcaggagctactcccgtagctgctccc 426
            | |||||||| |  ||||||||||||| |||||| ||||
Sbjct: 1038 gtgtatcacctcagaggagctactcccatagctgttccc 1076



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 108/134 (80%)
 Strand = Plus / Plus

                                                                       
Query: 31  aacgttcttattctccttatcgcagaggacgatcatactctcgtcatgacaggcatagat 90
           |||| ||||||||||||||| | ||| | |||||||| ||||   |  ||||||  ||||
Sbjct: 690 aacggtcttattctccttatggtagaaggcgatcatattctccatacaacaggcgaagat 749

                                                                       
Query: 91  catactccccctatggaaggaggccatcctactccccctatgaaaggaggccatcctact 150
           |||||||||||||||  ||| |   ||||||||| ||  |||||||||| |  |||||||
Sbjct: 750 catactccccctatgagaggcgtagatcctactctccacatgaaaggagacagtcctact 809

                         
Query: 151 ctccctatggcaga 164
           |||| |||||||||
Sbjct: 810 ctccgtatggcaga 823



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 62/73 (84%), Gaps = 1/73 (1%)
 Strand = Plus / Plus

                                                                        
Query: 513  aagaggcgttctagagaaagctatgcgcacagcccgcagttcatgctcgaggtccgtctc 572
            ||||||| |||||| || |||||  | ||||||| ||||||| | ||| ||||| |||||
Sbjct: 1157 aagaggcattctagggagagctactctcacagcc-gcagttcctactcaaggtctgtctc 1215

                         
Query: 573  cagggagcgctca 585
            |||||||||||||
Sbjct: 1216 cagggagcgctca 1228
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>gb|AY105790.1| Zea mays PCO079761 mRNA sequence
          Length = 1402

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                
Query: 147 tactctccctatggcagaaggagatcatactctcctt 183
           |||||||| |||| ||||||| |||||||||||||||
Sbjct: 826 tactctccatatgacagaaggcgatcatactctcctt 862



 Score = 40.1 bits (20), Expect = 9.5
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                    
Query: 546  ccgcagttcatgctcgaggtccgtctccagggagcgctca 585
            ||||||||| | ||| ||||| || |||||||||||||||
Sbjct: 1221 ccgcagttcgtactccaggtctgtgtccagggagcgctca 1260
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>gb|BT018387.1| Zea mays clone EL01N0313G10.d mRNA sequence
          Length = 1493

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 147 tactctccctatggcagaaggagatcatactctcc 181
           |||||||| |||| ||||||| |||||||||||||
Sbjct: 907 tactctccatatgacagaaggcgatcatactctcc 941
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>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 477    agcaaggcatcgcgcagcaggtcacc 502
              |||||||||||||||| |||||||||
Sbjct: 352179 agcaaggcatcgcgcaccaggtcacc 352154
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>gb|AC105748.2| Homo sapiens chromosome 3 clone RP11-532I6, complete sequence
          Length = 162258

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 434    agaagaatcaaggagctgttc 454
              |||||||||||||||||||||
Sbjct: 102941 agaagaatcaaggagctgttc 102961
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>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 582     ctcaacctcatcaagcacctg 602
               |||||||||||||||||||||
Sbjct: 1782677 ctcaacctcatcaagcacctg 1782657
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>gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome
          Length = 2364842

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 184    ccgacaggtcggagtctccc 203
              ||||||||||||||||||||
Sbjct: 754222 ccgacaggtcggagtctccc 754241
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>gb|AC115360.6| Mus musculus BAC clone RP23-191N22 from chromosome 19, complete sequence
          Length = 217325

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 116    atcctactccccctatgaaa 135
              ||||||||||||||||||||
Sbjct: 149635 atcctactccccctatgaaa 149654
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>gb|AC124552.3| Mus musculus BAC clone RP23-222M11 from chromosome 19, complete
             sequence
          Length = 237281

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 360   aggaacagaagacggagtta 379
             ||||||||||||||||||||
Sbjct: 94040 aggaacagaagacggagtta 94059
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>gb|DQ153984.1| Gossypium arboreum auxin response factor 2 (ARF2) mRNA, complete cds
          Length = 3723

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 458  gcagaaaggatatgctgaaa 477
            ||||||||||||||||||||
Sbjct: 3519 gcagaaaggatatgctgaaa 3500
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>gb|BC053925.1| Mus musculus cDNA clone IMAGE:6311688, partial cds
          Length = 3894

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 360  aggaacagaagacggagtta 379
            ||||||||||||||||||||
Sbjct: 1608 aggaacagaagacggagtta 1627
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>emb|AL731601.3|OSJN00245 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0044M19,
             complete sequence
          Length = 188317

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 614   agtgccttgatgactttggatgtt 637
             ||||||||||||||||| ||||||
Sbjct: 55774 agtgccttgatgacttttgatgtt 55797
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>gb|BC068307.1| Mus musculus lysyl oxidase-like 4, mRNA (cDNA clone MGC:76593
            IMAGE:30059745), complete cds
          Length = 3683

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 360  aggaacagaagacggagtta 379
            ||||||||||||||||||||
Sbjct: 3207 aggaacagaagacggagtta 3226
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>gb|AC073175.4| Homo sapiens chromosome 05 clone RP11-319P13, complete sequence
          Length = 173707

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 670   tagtgaagcagctgtatttc 689
             ||||||||||||||||||||
Sbjct: 84918 tagtgaagcagctgtatttc 84899
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>dbj|AK031666.1| Mus musculus 13 days embryo male testis cDNA, RIKEN full-length
            enriched library, clone:6030476O14 product:similar to
            MYOFERLIN (FER-1 LIKE PROTEIN 3) [Homo sapiens], full
            insert sequence
          Length = 3927

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 116  atcctactccccctatgaaa 135
            ||||||||||||||||||||
Sbjct: 3832 atcctactccccctatgaaa 3813
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>dbj|AK078840.1| Mus musculus adult male colon cDNA, RIKEN full-length enriched
           library, clone:9030013K10 product:hypothetical protein,
           full insert sequence
          Length = 2172

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 360 aggaacagaagacggagtta 379
           ||||||||||||||||||||
Sbjct: 4   aggaacagaagacggagtta 23
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>dbj|AK014773.1| Mus musculus 0 day neonate head cDNA, RIKEN full-length enriched
           library, clone:4833426I20 product:lysyl oxidase-like 4,
           full insert sequence
          Length = 1427

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 360 aggaacagaagacggagtta 379
           ||||||||||||||||||||
Sbjct: 968 aggaacagaagacggagtta 987
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 614      agtgccttgatgactttggatgtt 637
                ||||||||||||||||| ||||||
Sbjct: 18963850 agtgccttgatgacttttgatgtt 18963873
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>ref|NM_053083.2| Mus musculus lysyl oxidase-like 4 (Loxl4), mRNA
          Length = 3683

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 360  aggaacagaagacggagtta 379
            ||||||||||||||||||||
Sbjct: 3207 aggaacagaagacggagtta 3226
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>gb|AC010227.5|AC010227 Homo sapiens chromosome 5 clone CTC-289C9, complete sequence
          Length = 106320

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 670   tagtgaagcagctgtatttc 689
             ||||||||||||||||||||
Sbjct: 51514 tagtgaagcagctgtatttc 51495
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>gb|AC008893.4|AC008893 Homo sapiens chromosome 5 clone CTD-2228J24, complete sequence
          Length = 94995

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 670   tagtgaagcagctgtatttc 689
             ||||||||||||||||||||
Sbjct: 27088 tagtgaagcagctgtatttc 27107
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>gb|AC101774.6| Mus musculus chromosome 19, clone RP24-113J17, complete sequence
          Length = 209547

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 116    atcctactccccctatgaaa 135
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Sbjct: 150320 atcctactccccctatgaaa 150301
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>emb|AL672266.9| Mouse DNA sequence from clone RP23-342A10 on chromosome X, complete
              sequence
          Length = 216754

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 458    gcagaaaggatatgctgaaagcaa 481
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Sbjct: 156224 gcagagaggatatgctgaaagcaa 156247


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,107,924
Number of Sequences: 3902068
Number of extensions: 4107924
Number of successful extensions: 73352
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 73104
Number of HSP's gapped (non-prelim): 228
length of query: 697
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 674
effective length of database: 17,143,297,704
effective search space: 11554582652496
effective search space used: 11554582652496
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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