ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags39h21 |
|---|---|
| Clone Library Name | barley_pub |
>LSM6_MOUSE (P62313) U6 snRNA-associated Sm-like protein LSm6| Length = 80 Score = 140 bits (353), Expect = 2e-33 Identities = 67/73 (91%), Positives = 70/73 (95%) Frame = +2 Query: 56 KTPSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 235 +TPSDFLK I GRPVVVKLNSGVDYRG+LACLDGYMNIA+EQTEEYVNGQLKNKYGDAFI Sbjct: 6 QTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFI 65 Query: 236 RGNNVLYISTSKR 274 RGNNVLYIST KR Sbjct: 66 RGNNVLYISTQKR 78
>LSM6_HUMAN (P62312) U6 snRNA-associated Sm-like protein LSm6 (Sm protein F)| Length = 80 Score = 140 bits (353), Expect = 2e-33 Identities = 67/73 (91%), Positives = 70/73 (95%) Frame = +2 Query: 56 KTPSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 235 +TPSDFLK I GRPVVVKLNSGVDYRG+LACLDGYMNIA+EQTEEYVNGQLKNKYGDAFI Sbjct: 6 QTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFI 65 Query: 236 RGNNVLYISTSKR 274 RGNNVLYIST KR Sbjct: 66 RGNNVLYISTQKR 78
>LSM6_SCHPO (Q9UUI1) U6 snRNA-associated Sm-like protein LSm6| Length = 75 Score = 105 bits (262), Expect = 8e-23 Identities = 45/68 (66%), Positives = 61/68 (89%) Frame = +2 Query: 59 TPSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 238 +P++FL + G+ V+++L+SGVDY+GIL+CLDGYMN+A+E+TEEYVNG+ N YGDAFIR Sbjct: 4 SPNEFLNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVNGKKTNVYGDAFIR 63 Query: 239 GNNVLYIS 262 GNNVLY+S Sbjct: 64 GNNVLYVS 71
>RUXF_XENLA (P62321) Small nuclear ribonucleoprotein F (snRNP-F) (Sm protein F)| (Sm-F) (SmF) Length = 86 Score = 76.3 bits (186), Expect = 5e-14 Identities = 35/76 (46%), Positives = 48/76 (63%) Frame = +2 Query: 62 PSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 241 P FL + G+PV+VKL G++Y+G L +DGYMN+ + TEEY++G L G+ IR Sbjct: 7 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRC 66 Query: 242 NNVLYISTSKRPLTDG 289 NNVLYI + DG Sbjct: 67 NNVLYIRGVEEEEEDG 82
>RUXF_MOUSE (P62307) Small nuclear ribonucleoprotein F (snRNP-F) (Sm protein F)| (Sm-F) (SmF) Length = 86 Score = 76.3 bits (186), Expect = 5e-14 Identities = 35/76 (46%), Positives = 48/76 (63%) Frame = +2 Query: 62 PSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 241 P FL + G+PV+VKL G++Y+G L +DGYMN+ + TEEY++G L G+ IR Sbjct: 7 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRC 66 Query: 242 NNVLYISTSKRPLTDG 289 NNVLYI + DG Sbjct: 67 NNVLYIRGVEEEEEDG 82
>RUXF_HUMAN (P62306) Small nuclear ribonucleoprotein F (snRNP-F) (Sm protein F)| (Sm-F) (SmF) Length = 86 Score = 76.3 bits (186), Expect = 5e-14 Identities = 35/76 (46%), Positives = 48/76 (63%) Frame = +2 Query: 62 PSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 241 P FL + G+PV+VKL G++Y+G L +DGYMN+ + TEEY++G L G+ IR Sbjct: 7 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRC 66 Query: 242 NNVLYISTSKRPLTDG 289 NNVLYI + DG Sbjct: 67 NNVLYIRGVEEEEEDG 82
>RUXF_ARATH (Q9SUM2) Probable small nuclear ribonucleoprotein F (snRNP-F) (Sm| protein F) (Sm-F) (SmF) Length = 88 Score = 74.3 bits (181), Expect = 2e-13 Identities = 32/66 (48%), Positives = 46/66 (69%) Frame = +2 Query: 62 PSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 241 P FL ++ G+ V+VKL G++Y+G LA +D YMN+ + TEEY++GQL G+ IR Sbjct: 8 PKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGEILIRC 67 Query: 242 NNVLYI 259 NNVLY+ Sbjct: 68 NNVLYV 73
>RUXF_DROME (Q24297) Small nuclear ribonucleoprotein F (snRNP-F) (Sm protein F)| (Sm-F) (SmF) (Membrane-associated protein Deb-B) Length = 88 Score = 70.1 bits (170), Expect = 4e-12 Identities = 31/66 (46%), Positives = 42/66 (63%) Frame = +2 Query: 62 PSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 241 P FL + G+PV+VKL G +Y+G L +DGYMN+ + TEE + G + G+ IR Sbjct: 9 PKPFLNGLTGKPVLVKLKWGQEYKGFLVSVDGYMNMQLANTEEVIEGSVTGNLGEVLIRC 68 Query: 242 NNVLYI 259 NNVLYI Sbjct: 69 NNVLYI 74
>RUXF_CAEEL (P34659) Probable small nuclear ribonucleoprotein F (snRNP-F) (Sm| protein F) (Sm-F) (SmF) Length = 85 Score = 67.8 bits (164), Expect = 2e-11 Identities = 29/66 (43%), Positives = 43/66 (65%) Frame = +2 Query: 62 PSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 241 P FL S+ G+ VV KL G++Y+G+L +D YMN+ + EEY++G + G+ IR Sbjct: 9 PKPFLNSLTGKFVVCKLKWGMEYKGVLVAVDSYMNLQLAHAEEYIDGNSQGNLGEILIRC 68 Query: 242 NNVLYI 259 NNVLY+ Sbjct: 69 NNVLYV 74
>RUXX_THEAC (P57670) Putative snRNP Sm-like protein| Length = 83 Score = 60.5 bits (145), Expect = 3e-09 Identities = 28/70 (40%), Positives = 41/70 (58%) Frame = +2 Query: 62 PSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 241 P D LKS R V++ + +Y GIL D YMNI ++ E +NG+ K Y +RG Sbjct: 10 PMDVLKSALSRNVLIDVKGNREYSGILEGYDVYMNIVLQNASEIINGENKGVYDRVLVRG 69 Query: 242 NNVLYISTSK 271 +NV+++S SK Sbjct: 70 DNVIFVSPSK 79
>RUXF_SCHPO (O59734) Probable small nuclear ribonucleoprotein F (snRNP-F) (Sm| protein F) (Sm-F) (SmF) Length = 78 Score = 60.1 bits (144), Expect = 4e-09 Identities = 28/69 (40%), Positives = 42/69 (60%) Frame = +2 Query: 62 PSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 241 P FL+ + G+PV+V+L G +Y+G L +D YMN+ + EE V+G G+ IR Sbjct: 8 PKPFLQGLIGKPVLVRLKWGQEYKGTLQSVDSYMNLQLLNAEELVDGVKTGDLGEILIRC 67 Query: 242 NNVLYISTS 268 NNVL++ S Sbjct: 68 NNVLWVGES 76
>LSM6_YEAST (Q06406) U6 snRNA-associated Sm-like protein LSm6| Length = 123 Score = 58.5 bits (140), Expect = 1e-08 Identities = 32/73 (43%), Positives = 45/73 (61%), Gaps = 4/73 (5%) Frame = +2 Query: 65 SDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYV---NGQLKNKY-GDAF 232 ++FL I G+ V VKL SG+ Y G L +DG+MN+A+ E+ N +L NK+ D F Sbjct: 50 TEFLSDIIGKTVNVKLASGLLYSGRLESIDGFMNVALSSATEHYESNNNKLLNKFNSDVF 109 Query: 233 IRGNNVLYISTSK 271 +RG V+YIS K Sbjct: 110 LRGTQVMYISEQK 122
>RUXX_THEVO (Q97BU5) Putative snRNP Sm-like protein| Length = 83 Score = 57.0 bits (136), Expect = 3e-08 Identities = 25/70 (35%), Positives = 41/70 (58%) Frame = +2 Query: 62 PSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 241 P D LK+ R V++ + +Y GIL D YMN+ ++ E +NG+ K + +RG Sbjct: 10 PMDVLKNALSRNVLIDVKGNREYSGILEGYDVYMNVVLQNASEIINGENKGVFDRILVRG 69 Query: 242 NNVLYISTSK 271 +NV+++S SK Sbjct: 70 DNVIFVSPSK 79
>RUXX_METTH (O26745) Putative snRNP Sm-like protein| Length = 81 Score = 57.0 bits (136), Expect = 3e-08 Identities = 25/70 (35%), Positives = 42/70 (60%) Frame = +2 Query: 53 VKTPSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAF 232 V+ P D L + PV++KL ++RG+L D +MN+ + EE +G++ + G Sbjct: 11 VQRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDGEVTRRLGTVL 70 Query: 233 IRGNNVLYIS 262 IRG+N++YIS Sbjct: 71 IRGDNIVYIS 80
>RUXF_YEAST (P54999) Small nuclear ribonucleoprotein F (snRNP-F) (Sm protein F)| (Sm-F) (SmF) Length = 86 Score = 54.7 bits (130), Expect = 2e-07 Identities = 29/67 (43%), Positives = 37/67 (55%), Gaps = 1/67 (1%) Frame = +2 Query: 62 PSDFLKSIRGRPVVVKLN-SGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 238 P FLK + V VKL + +YRG L D Y N+ + + EE+V G G+ FIR Sbjct: 15 PKPFLKGLVNHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFVAGVSHGTLGEIFIR 74 Query: 239 GNNVLYI 259 NNVLYI Sbjct: 75 CNNVLYI 81
>RUXF_NEUCR (Q9P5Z8) Probable small nuclear ribonucleoprotein F (snRNP-F) (Sm| protein F) (Sm-F) (SmF) Length = 90 Score = 54.3 bits (129), Expect = 2e-07 Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 1/77 (1%) Frame = +2 Query: 62 PSDFLKSIRGRPVVVKLNSG-VDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 238 P FL+ + V ++L G +Y G L +D YMNI + T+EY+N + G IR Sbjct: 8 PRPFLQDLVNSFVTIRLKWGETEYVGRLVSIDSYMNIQLSDTKEYINRKFTGALGQVLIR 67 Query: 239 GNNVLYISTSKRPLTDG 289 NNVLYI + T G Sbjct: 68 CNNVLYIKKADEAETSG 84
>RUXX_METAC (Q8TL47) Putative snRNP Sm-like protein| Length = 72 Score = 53.9 bits (128), Expect = 3e-07 Identities = 24/67 (35%), Positives = 41/67 (61%) Frame = +2 Query: 62 PSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 241 P D L + PV+V+L ++RG L D +MN+ ++ EE +G++ +K+ IRG Sbjct: 5 PLDILNNALDTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEELRDGEVVSKFSSVVIRG 64 Query: 242 NNVLYIS 262 +NV+Y+S Sbjct: 65 DNVVYVS 71
>RUXX_METMA (Q8PZZ9) Putative snRNP Sm-like protein| Length = 72 Score = 53.5 bits (127), Expect = 4e-07 Identities = 24/67 (35%), Positives = 40/67 (59%) Frame = +2 Query: 62 PSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 241 P D L + PV+V+L ++RG L D +MN+ ++ EE G++ +K+ IRG Sbjct: 5 PLDILNNALDTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEELREGEVVSKFSSVVIRG 64 Query: 242 NNVLYIS 262 +NV+Y+S Sbjct: 65 DNVVYVS 71
>RUXX_ARCFU (O29386) Putative snRNP Sm-like protein| Length = 77 Score = 51.6 bits (122), Expect = 1e-06 Identities = 25/67 (37%), Positives = 38/67 (56%) Frame = +2 Query: 62 PSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 241 P D L PV+V+L G ++RG L D +MN+ + EE NG++ K G IRG Sbjct: 5 PLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRG 64 Query: 242 NNVLYIS 262 + V+++S Sbjct: 65 DTVVFVS 71
>RUXX_PYRHO (O74016) Putative snRNP Sm-like protein| Length = 75 Score = 46.6 bits (109), Expect = 5e-05 Identities = 24/70 (34%), Positives = 39/70 (55%) Frame = +2 Query: 62 PSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 241 P D + + V+V L G ++RG L D ++N+ + E +G++ KYG IRG Sbjct: 5 PLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMVQDGEVVKKYGKIVIRG 64 Query: 242 NNVLYISTSK 271 +NVL IS ++ Sbjct: 65 DNVLAISPTE 74
>RUXX_PYRFU (Q8U0P4) Putative snRNP Sm-like protein| Length = 76 Score = 46.6 bits (109), Expect = 5e-05 Identities = 24/70 (34%), Positives = 39/70 (55%) Frame = +2 Query: 62 PSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 241 P D + + V+V L G ++RG L D ++N+ + E +G++ KYG IRG Sbjct: 5 PLDVIHKSLDKDVLVILKKGFEFRGKLIGYDIHLNVVLANAELLQDGEVVKKYGKIVIRG 64 Query: 242 NNVLYISTSK 271 +NVL IS ++ Sbjct: 65 DNVLAISPTE 74
>RUXX_PYRAB (Q9V0Y8) Putative snRNP Sm-like protein| Length = 75 Score = 45.4 bits (106), Expect = 1e-04 Identities = 23/70 (32%), Positives = 39/70 (55%) Frame = +2 Query: 62 PSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 241 P D + + V+V L G ++RG L D ++N+ + E +G++ +YG IRG Sbjct: 5 PLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRG 64 Query: 242 NNVLYISTSK 271 +NVL IS ++ Sbjct: 65 DNVLAISPTE 74
>RUXX_PYRKO (Q5JIE0) Putative snRNP Sm-like protein| Length = 76 Score = 44.7 bits (104), Expect = 2e-04 Identities = 23/67 (34%), Positives = 37/67 (55%) Frame = +2 Query: 62 PSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 241 P D + + V+V L G ++RG L D ++N+ + E +G++ KYG IRG Sbjct: 5 PLDVIHKSLDKDVLVLLKRGNEFRGKLIGYDIHLNVVLADAELIQDGEVVKKYGKIVIRG 64 Query: 242 NNVLYIS 262 +NVL +S Sbjct: 65 DNVLALS 71
>LSM4_SCHPO (O14352) Probable U6 snRNA-associated Sm-like protein LSm4| Length = 121 Score = 44.7 bits (104), Expect = 2e-04 Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 1/78 (1%) Frame = +2 Query: 62 PSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAM-EQTEEYVNGQLKNKYGDAFIR 238 P L + +GRP++V+L +G + G L D YMN+ + E +G + + +IR Sbjct: 3 PLTLLNATQGRPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECYIR 62 Query: 239 GNNVLYISTSKRPLTDGA 292 GNN+ Y+ L+ A Sbjct: 63 GNNIKYLRIQDEVLSQVA 80
>RUXG_DROME (Q9VXE0) Probable small nuclear ribonucleoprotein G (snRNP-G) (Sm| protein G) (Sm-G) (SmG) Length = 76 Score = 43.1 bits (100), Expect = 5e-04 Identities = 21/67 (31%), Positives = 34/67 (50%) Frame = +2 Query: 74 LKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVL 253 +K + +++KLN G GIL D +MN+ ++ T E KN G IRGN+++ Sbjct: 9 VKKYMDKRMMLKLNGGRAVTGILRGFDPFMNVVLDDTVEECKDNTKNNIGMVVIRGNSIV 68 Query: 254 YISTSKR 274 + R Sbjct: 69 MVEALDR 75
>RUXG_MOUSE (P62309) Small nuclear ribonucleoprotein G (snRNP-G) (Sm protein G)| (Sm-G) (SmG) Length = 76 Score = 42.0 bits (97), Expect = 0.001 Identities = 20/67 (29%), Positives = 35/67 (52%) Frame = +2 Query: 74 LKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVL 253 LK + + +KLN G +GIL D +MN+ +++ E +N G IRGN+++ Sbjct: 9 LKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSII 68 Query: 254 YISTSKR 274 + +R Sbjct: 69 MLEALER 75
>RUXG_HUMAN (P62308) Small nuclear ribonucleoprotein G (snRNP-G) (Sm protein G)| (Sm-G) (SmG) Length = 76 Score = 42.0 bits (97), Expect = 0.001 Identities = 20/67 (29%), Positives = 35/67 (52%) Frame = +2 Query: 74 LKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVL 253 LK + + +KLN G +GIL D +MN+ +++ E +N G IRGN+++ Sbjct: 9 LKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSII 68 Query: 254 YISTSKR 274 + +R Sbjct: 69 MLEALER 75
>LSM4_FAGSY (Q9ZRU9) Probable U6 snRNA-associated Sm-like protein LSm4| (Glycine-rich protein 2) Length = 148 Score = 41.6 bits (96), Expect = 0.001 Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 1/67 (1%) Frame = +2 Query: 62 PSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTE-EYVNGQLKNKYGDAFIR 238 P LK+ +G P++V+L SG Y G L D +MNI + + +G + D +IR Sbjct: 3 PLSLLKTAQGHPMLVELKSGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPDCYIR 62 Query: 239 GNNVLYI 259 GN + Y+ Sbjct: 63 GNTIKYL 69
>RUXG_SCHPO (O74966) Probable small nuclear ribonucleoprotein G (snRNP-G) (Sm| protein G) (Sm-G) (SmG) Length = 77 Score = 41.6 bits (96), Expect = 0.001 Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 1/65 (1%) Frame = +2 Query: 74 LKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQT-EEYVNGQLKNKYGDAFIRGNNV 250 LK R V V+LN G+L D ++NI +E + EE V+G+ K K G IRGN+V Sbjct: 9 LKKYLDRQVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIEEKVDGE-KVKIGSVAIRGNSV 67 Query: 251 LYIST 265 + I T Sbjct: 68 IMIET 72
>LSM4_ORYSA (Q9LGE6) Probable U6 snRNA-associated Sm-like protein LSm4| Length = 147 Score = 38.9 bits (89), Expect = 0.009 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 1/67 (1%) Frame = +2 Query: 62 PSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTE-EYVNGQLKNKYGDAFIR 238 P LK+ +G P++V+L +G Y G L D +MNI + + +G + + +IR Sbjct: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYIR 62 Query: 239 GNNVLYI 259 GN + Y+ Sbjct: 63 GNTIKYL 69
>LSM4_CAEEL (Q19952) Probable U6 snRNA-associated Sm-like protein LSm4| Length = 123 Score = 38.5 bits (88), Expect = 0.012 Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 1/67 (1%) Frame = +2 Query: 62 PSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNI-AMEQTEEYVNGQLKNKYGDAFIR 238 P LK+ + P++V+L +G Y G L D +MNI ++ +G K +A++R Sbjct: 4 PLSLLKTAQNHPMLVELKNGETYNGHLKACDSWMNIHLVDVIFTSKDGDKFFKMSEAYVR 63 Query: 239 GNNVLYI 259 G+ + Y+ Sbjct: 64 GSTIKYL 70
>LSM4_TOBAC (Q43582) Probable U6 snRNA-associated Sm-like protein LSm4| (Glycine-rich protein 10) (GRP 10) Length = 146 Score = 38.5 bits (88), Expect = 0.012 Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 1/67 (1%) Frame = +2 Query: 62 PSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTE-EYVNGQLKNKYGDAFIR 238 P LK+ +G P++V+L +G Y G L D +MNI + + +G + + ++R Sbjct: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYVR 62 Query: 239 GNNVLYI 259 GN + Y+ Sbjct: 63 GNTIKYL 69
>RUXX_AERPE (Q9YEQ5) Putative snRNP Sm-like protein| Length = 77 Score = 37.7 bits (86), Expect = 0.021 Identities = 19/56 (33%), Positives = 34/56 (60%) Frame = +2 Query: 95 PVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYIS 262 PV+VKL SG+ +G+L D ++NI + EE ++ + G +RG++V+ I+ Sbjct: 20 PVLVKLKSGLRIKGVLKTYDQHLNIILGDAEEIGETSIR-RLGLTLVRGDSVVVIT 74
>RUXG_ARATH (O82221) Probable small nuclear ribonucleoprotein G (snRNP-G) (Sm| protein G) (Sm-G) (SmG) Length = 80 Score = 37.4 bits (85), Expect = 0.027 Identities = 21/62 (33%), Positives = 33/62 (53%) Frame = +2 Query: 74 LKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVL 253 LK + + +KLN+ G L D +MN+ ++ T E VNG K G IRGN+++ Sbjct: 10 LKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVE-VNGNDKTDIGMVVIRGNSIV 68 Query: 254 YI 259 + Sbjct: 69 TV 70
>RUXG_CAEEL (Q9N4G9) Probable small nuclear ribonucleoprotein G (snRNP-G) (Sm| protein G) (Sm-G) (SmG) Length = 77 Score = 36.2 bits (82), Expect = 0.061 Identities = 22/73 (30%), Positives = 34/73 (46%) Frame = +2 Query: 56 KTPSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 235 KT LK + + +KLN GIL D +MN+ +++ EY G I Sbjct: 3 KTHPPELKKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQKDGGSVNLGMTVI 62 Query: 236 RGNNVLYISTSKR 274 RGN+V+ + +R Sbjct: 63 RGNSVVIMEPKER 75
>LSM4_HUMAN (Q9Y4Z0) U6 snRNA-associated Sm-like protein LSm4 (Glycine-rich| protein) (GRP) Length = 139 Score = 35.8 bits (81), Expect = 0.080 Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 1/67 (1%) Frame = +2 Query: 62 PSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTE-EYVNGQLKNKYGDAFIR 238 P LK+ + P++V+L +G Y G L D +MNI + + +G + + +IR Sbjct: 3 PLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIR 62 Query: 239 GNNVLYI 259 G+ + Y+ Sbjct: 63 GSTIKYL 69
>LSM4_MOUSE (Q9QXA5) U6 snRNA-associated Sm-like protein LSm4| Length = 137 Score = 35.8 bits (81), Expect = 0.080 Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 1/67 (1%) Frame = +2 Query: 62 PSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTE-EYVNGQLKNKYGDAFIR 238 P LK+ + P++V+L +G Y G L D +MNI + + +G + + +IR Sbjct: 3 PLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIR 62 Query: 239 GNNVLYI 259 G+ + Y+ Sbjct: 63 GSTIKYL 69
>RUXG_MEDSA (P24715) Probable small nuclear ribonucleoprotein G (snRNP-G) (Sm| protein G) (Sm-G) (SmG) Length = 81 Score = 35.4 bits (80), Expect = 0.10 Identities = 21/62 (33%), Positives = 32/62 (51%) Frame = +2 Query: 74 LKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVL 253 LK + + + L + G L D +MN+ ++ T E VNG KN G IRGN+V+ Sbjct: 10 LKKYMDKQLQINLKANRMIVGTLRGFDQFMNLVVDNTVE-VNGNEKNDIGMVVIRGNSVV 68 Query: 254 YI 259 + Sbjct: 69 TV 70
>LSM2_MOUSE (O35900) U6 snRNA-associated Sm-like protein LSm2 (SnRNP core| Sm-like protein Sm-x5) (Protein G7b) Length = 95 Score = 33.1 bits (74), Expect = 0.52 Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 5/68 (7%) Frame = +2 Query: 71 FLKSIRGRPVVVKLNSGVDYRGILACLDGYMN-----IAMEQTEEYVNGQLKNKYGDAFI 235 F KS+ G+ VVV+L + + G L +D Y+N I++ E+Y + L K + FI Sbjct: 6 FFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPH-MLSVK--NCFI 62 Query: 236 RGNNVLYI 259 RG+ V Y+ Sbjct: 63 RGSVVRYV 70
>LSM2_HUMAN (Q9Y333) U6 snRNA-associated Sm-like protein LSm2 (SnRNP core| Sm-like protein Sm-x5) (Small nuclear ribonuclear protein D homolog) (Protein G7b) Length = 95 Score = 33.1 bits (74), Expect = 0.52 Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 5/68 (7%) Frame = +2 Query: 71 FLKSIRGRPVVVKLNSGVDYRGILACLDGYMN-----IAMEQTEEYVNGQLKNKYGDAFI 235 F KS+ G+ VVV+L + + G L +D Y+N I++ E+Y + L K + FI Sbjct: 6 FFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPH-MLSVK--NCFI 62 Query: 236 RGNNVLYI 259 RG+ V Y+ Sbjct: 63 RGSVVRYV 70
>LSM4_YEAST (P40070) U6 snRNA-associated Sm-like protein LSm4| Length = 187 Score = 32.3 bits (72), Expect = 0.88 Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 11/77 (14%) Frame = +2 Query: 62 PSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKN--------- 214 P L + +G+ + ++L +G +GIL +D +MN+ + EY N Sbjct: 3 PLYLLTNAKGQQMQIELKNGEIIQGILTNVDNWMNLTLSNVTEYSEESAINSEDNAESSK 62 Query: 215 --KYGDAFIRGNNVLYI 259 K + +IRG + +I Sbjct: 63 AVKLNEIYIRGTFIKFI 79
>LSM3_YEAST (P57743) U6 snRNA-associated Sm-like protein LSm3 (SmX4 protein)| Length = 89 Score = 31.6 bits (70), Expect = 1.5 Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 7/87 (8%) Frame = +2 Query: 53 VKTPSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYV----NGQL---K 211 ++TP D LK V +KL G L D + NI + E + N +L + Sbjct: 1 METPLDLLKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSESE 60 Query: 212 NKYGDAFIRGNNVLYISTSKRPLTDGA 292 + FIRG+ V IST DGA Sbjct: 61 RRCEMVFIRGDTVTLISTPSED-DDGA 86
>SMD1_SCHPO (O42661) Probable small nuclear ribonucleoprotein Sm D1 (snRNP core| protein D1) (Sm-D1) Length = 117 Score = 31.2 bits (69), Expect = 2.0 Identities = 17/62 (27%), Positives = 28/62 (45%) Frame = +2 Query: 71 FLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNV 250 FL + V ++L +G G + +D MN ++ + V G+ IRGNN+ Sbjct: 6 FLMKLTNETVSIELKNGTIVHGTITSVDMQMNTHLKAVKMTVKGREPVPVETLSIRGNNI 65 Query: 251 LY 256 Y Sbjct: 66 RY 67
>SMD3_CAEEL (Q17348) Small nuclear ribonucleoprotein Sm D3 (snRNP core protein| D3) (Sm-D3) Length = 136 Score = 30.8 bits (68), Expect = 2.6 Identities = 18/69 (26%), Positives = 31/69 (44%) Frame = +2 Query: 53 VKTPSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAF 232 V P L G V ++ +G YRG L+ + MN + +T ++ + F Sbjct: 4 VGVPIKILHEAEGHMVTLETVTGEVYRGKLSEAEDNMNCQLAETVVTFRDGRSHQLDNVF 63 Query: 233 IRGNNVLYI 259 IRGN + ++ Sbjct: 64 IRGNKIRFM 72
>SMD1_CAEEL (Q10013) Probable small nuclear ribonucleoprotein Sm D1 (snRNP core| protein D1) (Sm-D1) Length = 126 Score = 30.4 bits (67), Expect = 3.3 Identities = 18/63 (28%), Positives = 27/63 (42%) Frame = +2 Query: 71 FLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNV 250 FL + V ++L +G G + +D MN + V + K IRGNN+ Sbjct: 6 FLMKLSHETVNIELKNGTQVSGTIMGVDVAMNTHLRAVSMTVKNKEPVKLDTLSIRGNNI 65 Query: 251 LYI 259 YI Sbjct: 66 RYI 68
>APEX2_BOVIN (Q5E9N9) DNA-(apurinic or apyrimidinic site) lyase 2 (EC 4.2.99.18)| (Apurinic-apyrimidinic endonuclease 2) (AP endonuclease 2) Length = 514 Score = 30.4 bits (67), Expect = 3.3 Identities = 13/32 (40%), Positives = 18/32 (56%) Frame = -2 Query: 227 RHHICSSVGRSRTLRFAPSQCSYNRPGKPEYL 132 +H IC+ G+ +TL C + PGKPE L Sbjct: 137 QHKICTWEGKEKTLTLINVYCPHADPGKPERL 168
>I15RA_HUMAN (Q13261) Interleukin-15 receptor alpha chain precursor| (IL-15R-alpha) (IL-15RA) Length = 267 Score = 30.0 bits (66), Expect = 4.4 Identities = 13/30 (43%), Positives = 19/30 (63%) Frame = -3 Query: 463 EMVPDKSPSAGNIADSRYESDKGSTSQITS 374 +++P KSPS G S +ES G+ SQ T+ Sbjct: 151 QLMPSKSPSTGTTEISSHESSHGTPSQTTA 180
>LSMH_ENCCU (Q8SQH7) Probable U6 snRNA-associated Sm-like protein| Length = 70 Score = 30.0 bits (66), Expect = 4.4 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 5/71 (7%) Frame = +2 Query: 62 PSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNI-----AMEQTEEYVNGQLKNKYGD 226 P FLK V VK SG Y G L D ++N+ ++E +E+ V Sbjct: 4 PFCFLKMYLKERVEVKTKSGEAYTGTLEGFDEHINLMLTCSSVEGSEDKV---------- 53 Query: 227 AFIRGNNVLYI 259 F+RG N+L++ Sbjct: 54 LFLRGENILFV 64
>LSM1_YEAST (P47017) Sm-like protein LSm1 (SPB8 protein)| Length = 172 Score = 30.0 bits (66), Expect = 4.4 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 5/61 (8%) Frame = +2 Query: 92 RPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKY-----GDAFIRGNNVLY 256 R + V L G G+L D Y N+ ++ E + +NKY G IRG NV+ Sbjct: 52 RKIFVLLRDGRMLFGVLRTFDQYANLILQDCVERIYFSEENKYAEEDRGIFMIRGENVVM 111 Query: 257 I 259 + Sbjct: 112 L 112
>LSM10_HUMAN (Q969L4) U7 snRNA-associated Sm-like protein LSm10| Length = 123 Score = 29.3 bits (64), Expect = 7.5 Identities = 17/62 (27%), Positives = 28/62 (45%) Frame = +2 Query: 74 LKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVL 253 L+ ++GR V L G + +D +MNI + + + K D F+ G NV Sbjct: 21 LQGLQGRVTTVDLRDESVAHGRIDNVDAFMNIRLAKVTYTDRWGHQVKLDDLFVTGRNVR 80 Query: 254 YI 259 Y+ Sbjct: 81 YV 82 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,886,033 Number of Sequences: 219361 Number of extensions: 1127008 Number of successful extensions: 3077 Number of sequences better than 10.0: 50 Number of HSP's better than 10.0 without gapping: 3019 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3073 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4315578075 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
