ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bags39h21 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK063224.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-112-E09, full insert sequence Length = 548 Score = 268 bits (135), Expect = 2e-68 Identities = 237/271 (87%), Gaps = 10/271 (3%) Strand = Plus / Plus Query: 1 ggcggcggcgcggnacaagtccggcagcggcggcggaggtgctggtgggccggtcaagac 60 ||||||||||||| ||||||||||| ||||||||||||| || ||| ||||| Sbjct: 65 ggcggcggcgcgg-acaagtccggcggcggcggcggaggggc---------ggtgaagac 114 Query: 61 gccgtcagacttcctcaagtcgatcaggggccgccccgtcgtcgttaaactcaactcggg 120 ||| || ||||||||||||||||||||||| |||||||||||||| || |||||||| || Sbjct: 115 gccctcggacttcctcaagtcgatcaggggacgccccgtcgtcgtcaagctcaactccgg 174 Query: 121 cgtcgactaccgaggtattctggcttgcctggacggttatatgaacattgcgatggagca 180 ||||||||||||||||||| ||||||||||||| || |||||||||||||| |||||||| Sbjct: 175 cgtcgactaccgaggtattttggcttgcctggatgggtatatgaacattgcaatggagca 234 Query: 181 aaccgaagagtacgtgaacggccaactgaagaacaaatatggtgacgctttcataagagg 240 ||| |||||||| ||||| |||||||| |||||||| |||||||| || ||||||||||| Sbjct: 235 aacggaagagtatgtgaatggccaactcaagaacaagtatggtgatgccttcataagagg 294 Query: 241 caacaacgtcctctacatcagcacgtcgaag 271 |||||| || || ||||||||||| |||||| Sbjct: 295 caacaatgttctatacatcagcacttcgaag 325
>ref|XM_465923.1| Oryza sativa (japonica cultivar-group), mRNA Length = 627 Score = 190 bits (96), Expect = 3e-45 Identities = 198/232 (85%) Strand = Plus / Plus Query: 51 cggtcaagacgccgtcagacttcctcaagtcgatcaggggccgccccgtcgtcgttaaac 110 |||| |||||||| || |||||||||||||| |||||||| |||||||||||||| || | Sbjct: 106 cggtgaagacgccctccgacttcctcaagtccatcagggggcgccccgtcgtcgtcaagc 165 Query: 111 tcaactcgggcgtcgactaccgaggtattctggcttgcctggacggttatatgaacattg 170 ||||||| |||||||||||||| |||||| ||||||| || || ||||| |||||||||| Sbjct: 166 tcaactccggcgtcgactaccgcggtattttggcttgtcttgatggttacatgaacattg 225 Query: 171 cgatggagcaaaccgaagagtacgtgaacggccaactgaagaacaaatatggtgacgctt 230 | ||||||||||| ||||| || || || || || ||||||||||| || |||||||||| Sbjct: 226 caatggagcaaacggaagaatatgtcaatggtcagctgaagaacaagtacggtgacgctt 285 Query: 231 tcataagaggcaacaacgtcctctacatcagcacgtcgaagcggcccctcac 282 ||||| |||| ||||| || | ||||||||||| || ||||| ||||||| Sbjct: 286 tcatacgaggaaacaatgttttatacatcagcacatcaaagcgtaccctcac 337
>dbj|AK122107.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033126F06, full insert sequence Length = 474 Score = 190 bits (96), Expect = 3e-45 Identities = 198/232 (85%) Strand = Plus / Plus Query: 51 cggtcaagacgccgtcagacttcctcaagtcgatcaggggccgccccgtcgtcgttaaac 110 |||| |||||||| || |||||||||||||| |||||||| |||||||||||||| || | Sbjct: 47 cggtgaagacgccctccgacttcctcaagtccatcagggggcgccccgtcgtcgtcaagc 106 Query: 111 tcaactcgggcgtcgactaccgaggtattctggcttgcctggacggttatatgaacattg 170 ||||||| |||||||||||||| |||||| ||||||| || || ||||| |||||||||| Sbjct: 107 tcaactccggcgtcgactaccgcggtattttggcttgtcttgatggttacatgaacattg 166 Query: 171 cgatggagcaaaccgaagagtacgtgaacggccaactgaagaacaaatatggtgacgctt 230 | ||||||||||| ||||| || || || || || ||||||||||| || |||||||||| Sbjct: 167 caatggagcaaacggaagaatatgtcaatggtcagctgaagaacaagtacggtgacgctt 226 Query: 231 tcataagaggcaacaacgtcctctacatcagcacgtcgaagcggcccctcac 282 ||||| |||| ||||| || | ||||||||||| || ||||| ||||||| Sbjct: 227 tcatacgaggaaacaatgttttatacatcagcacatcaaagcgtaccctcac 278
>dbj|AK058487.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-D10, full insert sequence Length = 627 Score = 190 bits (96), Expect = 3e-45 Identities = 198/232 (85%) Strand = Plus / Plus Query: 51 cggtcaagacgccgtcagacttcctcaagtcgatcaggggccgccccgtcgtcgttaaac 110 |||| |||||||| || |||||||||||||| |||||||| |||||||||||||| || | Sbjct: 106 cggtgaagacgccctccgacttcctcaagtccatcagggggcgccccgtcgtcgtcaagc 165 Query: 111 tcaactcgggcgtcgactaccgaggtattctggcttgcctggacggttatatgaacattg 170 ||||||| |||||||||||||| |||||| ||||||| || || ||||| |||||||||| Sbjct: 166 tcaactccggcgtcgactaccgcggtattttggcttgtcttgatggttacatgaacattg 225 Query: 171 cgatggagcaaaccgaagagtacgtgaacggccaactgaagaacaaatatggtgacgctt 230 | ||||||||||| ||||| || || || || || ||||||||||| || |||||||||| Sbjct: 226 caatggagcaaacggaagaatatgtcaatggtcagctgaagaacaagtacggtgacgctt 285 Query: 231 tcataagaggcaacaacgtcctctacatcagcacgtcgaagcggcccctcac 282 ||||| |||| ||||| || | ||||||||||| || ||||| ||||||| Sbjct: 286 tcatacgaggaaacaatgttttatacatcagcacatcaaagcgtaccctcac 337
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 139 bits (70), Expect = 1e-29 Identities = 103/114 (90%) Strand = Plus / Minus Query: 133 aggtattctggcttgcctggacggttatatgaacattgcgatggagcaaaccgaagagta 192 ||||||| ||||||||||||| || |||||||||||||| ||||||||||| |||||||| Sbjct: 19145723 aggtattttggcttgcctggatgggtatatgaacattgcaatggagcaaacggaagagta 19145664 Query: 193 cgtgaacggccaactgaagaacaaatatggtgacgctttcataagaggcaacaa 246 ||||| |||||||| |||||||| |||||||| || ||||||||||||||||| Sbjct: 19145663 tgtgaatggccaactcaagaacaagtatggtgatgccttcataagaggcaacaa 19145610 Score = 119 bits (60), Expect = 1e-23 Identities = 117/136 (86%), Gaps = 10/136 (7%) Strand = Plus / Minus Query: 1 ggcggcggcgcggnacaagtccggcagcggcggcggaggtgctggtgggccggtcaagac 60 ||||||||||||| ||||||||||| ||||||||||||| || ||| ||||| Sbjct: 19150374 ggcggcggcgcgg-acaagtccggcggcggcggcggaggggc---------ggtgaagac 19150325 Query: 61 gccgtcagacttcctcaagtcgatcaggggccgccccgtcgtcgttaaactcaactcggg 120 ||| || ||||||||||||||||||||||| |||||||||||||| || |||||||| || Sbjct: 19150324 gccctcggacttcctcaagtcgatcaggggacgccccgtcgtcgtcaagctcaactccgg 19150265 Query: 121 cgtcgactaccgaggt 136 |||||||||||||||| Sbjct: 19150264 cgtcgactaccgaggt 19150249 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 22 cggcagcggcggcggaggtgctggtggg 49 |||| ||||||||||||||| ||||||| Sbjct: 30167554 cggcggcggcggcggaggtggtggtggg 30167581 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 22 cggcagcggcggcggaggtg 41 |||||||||||||||||||| Sbjct: 11867429 cggcagcggcggcggaggtg 11867410
>emb|AL731599.2|OSJN00244 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0053B21, complete sequence Length = 151936 Score = 139 bits (70), Expect = 1e-29 Identities = 103/114 (90%) Strand = Plus / Minus Query: 133 aggtattctggcttgcctggacggttatatgaacattgcgatggagcaaaccgaagagta 192 ||||||| ||||||||||||| || |||||||||||||| ||||||||||| |||||||| Sbjct: 79243 aggtattttggcttgcctggatgggtatatgaacattgcaatggagcaaacggaagagta 79184 Query: 193 cgtgaacggccaactgaagaacaaatatggtgacgctttcataagaggcaacaa 246 ||||| |||||||| |||||||| |||||||| || ||||||||||||||||| Sbjct: 79183 tgtgaatggccaactcaagaacaagtatggtgatgccttcataagaggcaacaa 79130 Score = 119 bits (60), Expect = 1e-23 Identities = 117/136 (86%), Gaps = 10/136 (7%) Strand = Plus / Minus Query: 1 ggcggcggcgcggnacaagtccggcagcggcggcggaggtgctggtgggccggtcaagac 60 ||||||||||||| ||||||||||| ||||||||||||| || ||| ||||| Sbjct: 83894 ggcggcggcgcgg-acaagtccggcggcggcggcggaggggc---------ggtgaagac 83845 Query: 61 gccgtcagacttcctcaagtcgatcaggggccgccccgtcgtcgttaaactcaactcggg 120 ||| || ||||||||||||||||||||||| |||||||||||||| || |||||||| || Sbjct: 83844 gccctcggacttcctcaagtcgatcaggggacgccccgtcgtcgtcaagctcaactccgg 83785 Query: 121 cgtcgactaccgaggt 136 |||||||||||||||| Sbjct: 83784 cgtcgactaccgaggt 83769
>ref|XM_472290.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1749 Score = 115 bits (58), Expect = 2e-22 Identities = 115/134 (85%), Gaps = 10/134 (7%) Strand = Plus / Plus Query: 1 ggcggcggcgcggnacaagtccggcagcggcggcggaggtgctggtgggccggtcaagac 60 ||||||||||||| ||||||||||| ||||||||||||| || ||| ||||| Sbjct: 10 ggcggcggcgcgg-acaagtccggcggcggcggcggaggggc---------ggtgaagac 59 Query: 61 gccgtcagacttcctcaagtcgatcaggggccgccccgtcgtcgttaaactcaactcggg 120 ||| || ||||||||||||||||||||||| |||||||||||||| || |||||||| || Sbjct: 60 gccctcggacttcctcaagtcgatcaggggacgccccgtcgtcgtcaagctcaactccgg 119 Query: 121 cgtcgactaccgag 134 |||||||||||||| Sbjct: 120 cgtcgactaccgag 133
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 101 bits (51), Expect = 2e-18 Identities = 78/87 (89%) Strand = Plus / Minus Query: 51 cggtcaagacgccgtcagacttcctcaagtcgatcaggggccgccccgtcgtcgttaaac 110 |||| |||||||| || |||||||||||||| |||||||| |||||||||||||| || | Sbjct: 18335458 cggtgaagacgccctccgacttcctcaagtccatcagggggcgccccgtcgtcgtcaagc 18335399 Query: 111 tcaactcgggcgtcgactaccgaggta 137 ||||||| |||||||||||||| |||| Sbjct: 18335398 tcaactccggcgtcgactaccgcggta 18335372 Score = 91.7 bits (46), Expect = 2e-15 Identities = 97/114 (85%) Strand = Plus / Minus Query: 133 aggtattctggcttgcctggacggttatatgaacattgcgatggagcaaaccgaagagta 192 ||||||| ||||||| || || ||||| ||||||||||| ||||||||||| ||||| || Sbjct: 18331791 aggtattttggcttgtcttgatggttacatgaacattgcaatggagcaaacggaagaata 18331732 Query: 193 cgtgaacggccaactgaagaacaaatatggtgacgctttcataagaggcaacaa 246 || || || || ||||||||||| || ||||||||||||||| |||| ||||| Sbjct: 18331731 tgtcaatggtcagctgaagaacaagtacggtgacgctttcatacgaggaaacaa 18331678 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 22 cggcagcggcggcggaggtgctgg 45 ||||||||||||||| |||||||| Sbjct: 4423365 cggcagcggcggcggcggtgctgg 4423388
>dbj|AP005841.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0052M16 Length = 145423 Score = 101 bits (51), Expect = 2e-18 Identities = 78/87 (89%) Strand = Plus / Minus Query: 51 cggtcaagacgccgtcagacttcctcaagtcgatcaggggccgccccgtcgtcgttaaac 110 |||| |||||||| || |||||||||||||| |||||||| |||||||||||||| || | Sbjct: 136671 cggtgaagacgccctccgacttcctcaagtccatcagggggcgccccgtcgtcgtcaagc 136612 Query: 111 tcaactcgggcgtcgactaccgaggta 137 ||||||| |||||||||||||| |||| Sbjct: 136611 tcaactccggcgtcgactaccgcggta 136585 Score = 91.7 bits (46), Expect = 2e-15 Identities = 97/114 (85%) Strand = Plus / Minus Query: 133 aggtattctggcttgcctggacggttatatgaacattgcgatggagcaaaccgaagagta 192 ||||||| ||||||| || || ||||| ||||||||||| ||||||||||| ||||| || Sbjct: 133004 aggtattttggcttgtcttgatggttacatgaacattgcaatggagcaaacggaagaata 132945 Query: 193 cgtgaacggccaactgaagaacaaatatggtgacgctttcataagaggcaacaa 246 || || || || ||||||||||| || ||||||||||||||| |||| ||||| Sbjct: 132944 tgtcaatggtcagctgaagaacaagtacggtgacgctttcatacgaggaaacaa 132891
>ref|NM_129943.2| Arabidopsis thaliana unknown protein AT2G43810 mRNA, complete cds Length = 781 Score = 85.7 bits (43), Expect = 1e-13 Identities = 91/107 (85%) Strand = Plus / Plus Query: 158 tatatgaacattgcgatggagcaaaccgaagagtacgtgaacggccaactgaagaacaaa 217 ||||||||||| || |||||||||||||||||||| || || ||||| |||||||||| | Sbjct: 229 tatatgaacatcgcaatggagcaaaccgaagagtatgtaaatggccagctgaagaacaca 288 Query: 218 tatggtgacgctttcataagaggcaacaacgtcctctacatcagcac 264 ||||| |||||||| | | |||||||| || || ||||||||||| Sbjct: 289 tatggcgacgcttttgtccgtggcaacaatgttctttacatcagcac 335
>gb|BT008305.1| Arabidopsis thaliana At2g43810 gene, complete cds Length = 276 Score = 85.7 bits (43), Expect = 1e-13 Identities = 91/107 (85%) Strand = Plus / Plus Query: 158 tatatgaacattgcgatggagcaaaccgaagagtacgtgaacggccaactgaagaacaaa 217 ||||||||||| || |||||||||||||||||||| || || ||||| |||||||||| | Sbjct: 139 tatatgaacatcgcaatggagcaaaccgaagagtatgtaaatggccagctgaagaacaca 198 Query: 218 tatggtgacgctttcataagaggcaacaacgtcctctacatcagcac 264 ||||| |||||||| | | |||||||| || || ||||||||||| Sbjct: 199 tatggcgacgcttttgtccgtggcaacaatgttctttacatcagcac 245
>emb|BX821421.1|CNS0A8BJ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL40ZC05 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 662 Score = 85.7 bits (43), Expect = 1e-13 Identities = 91/107 (85%) Strand = Plus / Plus Query: 158 tatatgaacattgcgatggagcaaaccgaagagtacgtgaacggccaactgaagaacaaa 217 ||||||||||| || |||||||||||||||||||| || || ||||| |||||||||| | Sbjct: 215 tatatgaacatcgcaatggagcaaaccgaagagtatgtaaatggccagctgaagaacaca 274 Query: 218 tatggtgacgctttcataagaggcaacaacgtcctctacatcagcac 264 ||||| |||||||| | | |||||||| || || ||||||||||| Sbjct: 275 tatggcgacgcttttgtccgtggcaacaatgttctttacatcagcac 321
>gb|AC002333.3| Arabidopsis thaliana chromosome 2 clone F18O19 map CIC10F02, complete sequence Length = 98734 Score = 83.8 bits (42), Expect = 5e-13 Identities = 66/74 (89%) Strand = Plus / Minus Query: 158 tatatgaacattgcgatggagcaaaccgaagagtacgtgaacggccaactgaagaacaaa 217 ||||||||||| || |||||||||||||||||||| || || ||||| |||||||||| | Sbjct: 23235 tatatgaacatcgcaatggagcaaaccgaagagtatgtaaatggccagctgaagaacaca 23176 Query: 218 tatggtgacgcttt 231 ||||| |||||||| Sbjct: 23175 tatggcgacgcttt 23162
>gb|AY433311.1| Aedes aegypti ASAP ID: 34253 small nuclear ribonucleoprotein mRNA sequence Length = 429 Score = 75.8 bits (38), Expect = 1e-10 Identities = 98/118 (83%) Strand = Plus / Plus Query: 141 tggcttgcctggacggttatatgaacattgcgatggagcaaaccgaagagtacgtgaacg 200 |||||||||| || || || |||||||| || |||| || || || |||||||| |||| Sbjct: 206 tggcttgcctcgatggctacatgaacatcgccctggatcagacggaggagtacgttaacg 265 Query: 201 gccaactgaagaacaaatatggtgacgctttcataagaggcaacaacgtcctctacat 258 | || ||||||||||||||||| ||||| ||||| ||||||||||||| || ||||| Sbjct: 266 gtcagctgaagaacaaatatggcgacgcgttcattcgaggcaacaacgtgctgtacat 323
>gb|BC078551.1| Xenopus laevis MGC85411 protein, mRNA (cDNA clone MGC:85411 IMAGE:6933188), complete cds Length = 612 Score = 73.8 bits (37), Expect = 5e-10 Identities = 94/113 (83%) Strand = Plus / Plus Query: 110 ctcaactcgggcgtcgactaccgaggtattctggcttgcctggacggttatatgaacatt 169 |||||||| || ||||| || |||||| ||||||| || | || ||||||||||| ||| Sbjct: 177 ctcaactctggagtcgattatcgaggtgttctggcatgtttagatggttatatgaatatt 236 Query: 170 gcgatggagcaaaccgaagagtacgtgaacggccaactgaagaacaaatatgg 222 || |||| ||||| |||||||| ||||| || || ||||||||||||||||| Sbjct: 237 gctttggaacaaactgaagagtatgtgaatggacagctgaagaacaaatatgg 289
>gb|AY314955.1| Herdmania curvata clone 712 Sm protein-like mRNA, partial sequence Length = 730 Score = 69.9 bits (35), Expect = 8e-09 Identities = 89/107 (83%) Strand = Plus / Plus Query: 140 ctggcttgcctggacggttatatgaacattgcgatggagcaaaccgaagagtacgtgaac 199 |||||||| || || ||||| ||||||||||| |||| ||||| |||||||| || || Sbjct: 99 ctggcttgtctcgatggttacatgaacattgccctggaacaaacagaagagtatgtcaat 158 Query: 200 ggccaactgaagaacaaatatggtgacgctttcataagaggcaacaa 246 || ||| |||| ||||||||||| || |||||||| ||||| ||||| Sbjct: 159 ggacaattgaaaaacaaatatggcgatgctttcatcagagggaacaa 205
>gb|AY231994.1| Drosophila yakuba clone yak-ad_CG9344 mRNA sequence Length = 237 Score = 65.9 bits (33), Expect = 1e-07 Identities = 116/141 (82%), Gaps = 2/141 (1%) Strand = Plus / Plus Query: 119 ggcgtcgactaccgaggtattctggcttgcctggacggttatatgaacat-tgcgatgga 177 ||||| |||||||||||| | ||||| || ||||| || || |||||||| ||| |||| Sbjct: 76 ggcgtggactaccgaggtgtgctggcctgtctggatggctacatgaacatctgcc-tgga 134 Query: 178 gcaaaccgaagagtacgtgaacggccaactgaagaacaaatatggtgacgctttcataag 237 ||| || || ||||||||||| || || ||||||||||| || || ||||| || || | Sbjct: 135 gcagacggaggagtacgtgaatgggcagctgaagaacaagtacggcgacgcctttatccg 194 Query: 238 aggcaacaacgtcctctacat 258 |||||||||||||||||||| Sbjct: 195 cggcaacaacgtcctctacat 215
>emb|CR719116.2|CNS0GHTE Tetraodon nigroviridis full-length cDNA Length = 461 Score = 65.9 bits (33), Expect = 1e-07 Identities = 102/125 (81%) Strand = Plus / Plus Query: 140 ctggcttgcctggacggttatatgaacattgcgatggagcaaaccgaagagtacgtgaac 199 |||||||| |||| ||||| ||||||||||| || || ||||| ||||| || || || Sbjct: 180 ctggcttgtttggatggttacatgaacattgccatcgaacaaactgaagaatatgtaaat 239 Query: 200 ggccaactgaagaacaaatatggtgacgctttcataagaggcaacaacgtcctctacatc 259 ||||| || |||||||| ||||| || ||||| | ||||| ||||| || ||||||||| Sbjct: 240 ggccagctcaagaacaagtatggcgatgcttttctgagaggaaacaatgttctctacatc 299 Query: 260 agcac 264 ||||| Sbjct: 300 agcac 304
>emb|CR715593.2|CNS0GF3P Tetraodon nigroviridis full-length cDNA Length = 453 Score = 65.9 bits (33), Expect = 1e-07 Identities = 102/125 (81%) Strand = Plus / Plus Query: 140 ctggcttgcctggacggttatatgaacattgcgatggagcaaaccgaagagtacgtgaac 199 |||||||| |||| ||||| ||||||||||| || || ||||| ||||| || || || Sbjct: 172 ctggcttgtttggatggttacatgaacattgccatcgaacaaactgaagaatatgtaaat 231 Query: 200 ggccaactgaagaacaaatatggtgacgctttcataagaggcaacaacgtcctctacatc 259 ||||| || |||||||| ||||| || ||||| | ||||| ||||| || ||||||||| Sbjct: 232 ggccagctcaagaacaagtatggcgatgcttttctgagaggaaacaatgttctctacatc 291 Query: 260 agcac 264 ||||| Sbjct: 292 agcac 296
>emb|CR712519.2|CNS0GCQB Tetraodon nigroviridis full-length cDNA Length = 421 Score = 65.9 bits (33), Expect = 1e-07 Identities = 102/125 (81%) Strand = Plus / Plus Query: 140 ctggcttgcctggacggttatatgaacattgcgatggagcaaaccgaagagtacgtgaac 199 |||||||| |||| ||||| ||||||||||| || || ||||| ||||| || || || Sbjct: 136 ctggcttgtttggatggttacatgaacattgccatcgaacaaactgaagaatatgtaaat 195 Query: 200 ggccaactgaagaacaaatatggtgacgctttcataagaggcaacaacgtcctctacatc 259 ||||| || |||||||| ||||| || ||||| | ||||| ||||| || ||||||||| Sbjct: 196 ggccagctcaagaacaagtatggggatgcttttctgagaggaaacaatgttctctacatc 255 Query: 260 agcac 264 ||||| Sbjct: 256 agcac 260
>emb|CR713592.2|CNS0GDK4 Tetraodon nigroviridis full-length cDNA Length = 421 Score = 65.9 bits (33), Expect = 1e-07 Identities = 102/125 (81%) Strand = Plus / Plus Query: 140 ctggcttgcctggacggttatatgaacattgcgatggagcaaaccgaagagtacgtgaac 199 |||||||| |||| ||||| ||||||||||| || || ||||| ||||| || || || Sbjct: 136 ctggcttgtttggatggttacatgaacattgccatcgaacaaactgaagaatatgtaaat 195 Query: 200 ggccaactgaagaacaaatatggtgacgctttcataagaggcaacaacgtcctctacatc 259 ||||| || |||||||| ||||| || ||||| | ||||| ||||| || ||||||||| Sbjct: 196 ggccagctcaagaacaagtatggggatgcttttctgagaggaaacaatgttctctacatc 255 Query: 260 agcac 264 ||||| Sbjct: 256 agcac 260
>emb|CR706927.2|CNS0G8EZ Tetraodon nigroviridis full-length cDNA Length = 424 Score = 65.9 bits (33), Expect = 1e-07 Identities = 102/125 (81%) Strand = Plus / Plus Query: 140 ctggcttgcctggacggttatatgaacattgcgatggagcaaaccgaagagtacgtgaac 199 |||||||| |||| ||||| ||||||||||| || || ||||| ||||| || || || Sbjct: 139 ctggcttgtttggatggttacatgaacattgccatcgaacaaactgaagaatatgtaaat 198 Query: 200 ggccaactgaagaacaaatatggtgacgctttcataagaggcaacaacgtcctctacatc 259 ||||| || |||||||| ||||| || ||||| | ||||| ||||| || ||||||||| Sbjct: 199 ggccagctcaagaacaagtatggggatgcttttctgagaggaaacaatgttctctacatc 258 Query: 260 agcac 264 ||||| Sbjct: 259 agcac 263
>gb|AC137667.18| Medicago truncatula clone mth2-30h5, complete sequence Length = 111249 Score = 65.9 bits (33), Expect = 1e-07 Identities = 66/77 (85%) Strand = Plus / Plus Query: 158 tatatgaacattgcgatggagcaaaccgaagagtacgtgaacggccaactgaagaacaaa 217 |||||||| ||||| ||||| ||||| ||||||||||| || || || ||||||||||| Sbjct: 90293 tatatgaatattgcaatggaacaaacagaagagtacgttaatggacagctgaagaacaag 90352 Query: 218 tatggtgacgctttcat 234 |||||||| || ||||| Sbjct: 90353 tatggtgatgcattcat 90369
>gb|AC135160.22| Medicago truncatula clone mth2-20m5, complete sequence Length = 120202 Score = 65.9 bits (33), Expect = 1e-07 Identities = 66/77 (85%) Strand = Plus / Minus Query: 158 tatatgaacattgcgatggagcaaaccgaagagtacgtgaacggccaactgaagaacaaa 217 |||||||| ||||| ||||| ||||| ||||||||||| || || || ||||||||||| Sbjct: 33718 tatatgaatattgcaatggaacaaacagaagagtacgttaatggacagctgaagaacaag 33659 Query: 218 tatggtgacgctttcat 234 |||||||| || ||||| Sbjct: 33658 tatggtgatgcattcat 33642
>ref|NM_115843.2| Arabidopsis thaliana unknown protein AT3G59810 mRNA, complete cds Length = 625 Score = 63.9 bits (32), Expect = 5e-07 Identities = 86/104 (82%) Strand = Plus / Plus Query: 158 tatatgaacattgcgatggagcaaaccgaagagtacgtgaacggccaactgaagaacaaa 217 ||||||||||| || |||||||| || || ||||| || ||||| || || ||||||||| Sbjct: 246 tatatgaacatagcaatggagcagacggaggagtatgtaaacgggcagctcaagaacaaa 305 Query: 218 tatggtgacgctttcataagaggcaacaacgtcctctacatcag 261 ||||||||||| || || | || |||||||| || |||||||| Sbjct: 306 tatggtgacgcctttatccgtggaaacaacgttctttacatcag 349
>ref|NM_058482.2| Caenorhabditis elegans LSM Sm-like protein family member (lsm-6) (lsm-6) mRNA, complete cds Length = 288 Score = 63.9 bits (32), Expect = 5e-07 Identities = 68/80 (85%) Strand = Plus / Plus Query: 110 ctcaactcgggcgtcgactaccgaggtattctggcttgcctggacggttatatgaacatt 169 |||||||| |||||||||||||| || ||||| || || || ||||| ||||||||||| Sbjct: 81 ctcaactctggcgtcgactaccgtggcattctcgcatgtctcgacggatatatgaacatc 140 Query: 170 gcgatggagcaaaccgaaga 189 ||| | || ||||||||||| Sbjct: 141 gcgctcgaacaaaccgaaga 160
>emb|BX825935.1|CNS0A591 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL74ZA02 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 556 Score = 63.9 bits (32), Expect = 5e-07 Identities = 86/104 (82%) Strand = Plus / Plus Query: 158 tatatgaacattgcgatggagcaaaccgaagagtacgtgaacggccaactgaagaacaaa 217 ||||||||||| || |||||||| || || ||||| || ||||| || || ||||||||| Sbjct: 211 tatatgaacatagcaatggagcagacggaggagtatgtaaacgggcagctcaagaacaaa 270 Query: 218 tatggtgacgctttcataagaggcaacaacgtcctctacatcag 261 ||||||||||| || || | || |||||||| || |||||||| Sbjct: 271 tatggtgacgcctttatccgtggaaacaacgttctttacatcag 314
>emb|BX825807.1|CNS0A528 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL64ZB03 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 514 Score = 63.9 bits (32), Expect = 5e-07 Identities = 86/104 (82%) Strand = Plus / Plus Query: 158 tatatgaacattgcgatggagcaaaccgaagagtacgtgaacggccaactgaagaacaaa 217 ||||||||||| || |||||||| || || ||||| || ||||| || || ||||||||| Sbjct: 167 tatatgaacatagcaatggagcagacggaggagtatgtaaacgggcagctcaagaacaaa 226 Query: 218 tatggtgacgctttcataagaggcaacaacgtcctctacatcag 261 ||||||||||| || || | || |||||||| || |||||||| Sbjct: 227 tatggtgacgcctttatccgtggaaacaacgttctttacatcag 270
>gb|BT004433.1| Arabidopsis thaliana clone U20298 putative U6 snRNA-associated Sm protein (At3g59810) mRNA, complete cds Length = 307 Score = 63.9 bits (32), Expect = 5e-07 Identities = 86/104 (82%) Strand = Plus / Plus Query: 158 tatatgaacattgcgatggagcaaaccgaagagtacgtgaacggccaactgaagaacaaa 217 ||||||||||| || |||||||| || || ||||| || ||||| || || ||||||||| Sbjct: 139 tatatgaacatagcaatggagcagacggaggagtatgtaaacgggcagctcaagaacaaa 198 Query: 218 tatggtgacgctttcataagaggcaacaacgtcctctacatcag 261 ||||||||||| || || | || |||||||| || |||||||| Sbjct: 199 tatggtgacgcctttatccgtggaaacaacgttctttacatcag 242
>gb|AY086430.1| Arabidopsis thaliana clone 25079 mRNA, complete sequence Length = 597 Score = 63.9 bits (32), Expect = 5e-07 Identities = 86/104 (82%) Strand = Plus / Plus Query: 158 tatatgaacattgcgatggagcaaaccgaagagtacgtgaacggccaactgaagaacaaa 217 ||||||||||| || |||||||| || || ||||| || ||||| || || ||||||||| Sbjct: 246 tatatgaacatagcaatggagcagacggaggagtatgtaaacgggcagctcaagaacaaa 305 Query: 218 tatggtgacgctttcataagaggcaacaacgtcctctacatcag 261 ||||||||||| || || | || |||||||| || |||||||| Sbjct: 306 tatggtgacgcctttatccgtggaaacaacgttctttacatcag 349
>gb|BT002850.1| Arabidopsis thaliana clone RAFL14-80-I08 (R20298) putative U6 snRNA-associated Sm protein (At3g59810) mRNA, complete cds Length = 629 Score = 63.9 bits (32), Expect = 5e-07 Identities = 86/104 (82%) Strand = Plus / Plus Query: 158 tatatgaacattgcgatggagcaaaccgaagagtacgtgaacggccaactgaagaacaaa 217 ||||||||||| || |||||||| || || ||||| || ||||| || || ||||||||| Sbjct: 233 tatatgaacatagcaatggagcagacggaggagtatgtaaacgggcagctcaagaacaaa 292 Query: 218 tatggtgacgctttcataagaggcaacaacgtcctctacatcag 261 ||||||||||| || || | || |||||||| || |||||||| Sbjct: 293 tatggtgacgcctttatccgtggaaacaacgttctttacatcag 336
>emb|AL138647.1|ATF24G16 Arabidopsis thaliana DNA chromosome 3, BAC clone F24G16 Length = 100906 Score = 61.9 bits (31), Expect = 2e-06 Identities = 61/71 (85%) Strand = Plus / Plus Query: 158 tatatgaacattgcgatggagcaaaccgaagagtacgtgaacggccaactgaagaacaaa 217 ||||||||||| || |||||||| || || ||||| || ||||| || || ||||||||| Sbjct: 30274 tatatgaacatagcaatggagcagacggaggagtatgtaaacgggcagctcaagaacaaa 30333 Query: 218 tatggtgacgc 228 ||||||||||| Sbjct: 30334 tatggtgacgc 30344
>emb|AJ292366.1|EMU292366 Echinococcus multilocularis mRNA for putative U6-snRNA-associated protein (smlp gene) Length = 358 Score = 60.0 bits (30), Expect = 8e-06 Identities = 51/58 (87%) Strand = Plus / Plus Query: 174 tggagcaaaccgaagagtacgtgaacggccaactgaagaacaaatatggtgacgcttt 231 ||||||| || ||||||||||| | || |||||||||||||||||||||||| |||| Sbjct: 174 tggagcagacagaagagtacgtcgagggtcaactgaagaacaaatatggtgacacttt 231
>emb|CT025429.2| Xenopus tropicalis finished cDNA, clone TGas070i08 Length = 571 Score = 58.0 bits (29), Expect = 3e-05 Identities = 92/113 (81%) Strand = Plus / Plus Query: 110 ctcaactcgggcgtcgactaccgaggtattctggcttgcctggacggttatatgaacatt 169 |||||||| || ||||| || |||||| ||||||| || | || ||||| ||||| ||| Sbjct: 97 ctcaactctggagtcgattatcgaggtgttctggcatgtttagatggttacatgaatatt 156 Query: 170 gcgatggagcaaaccgaagagtacgtgaacggccaactgaagaacaaatatgg 222 || |||| ||||| |||||||| ||||| || || ||||||||||| ||||| Sbjct: 157 gctttggaacaaacagaagagtatgtgaatggacagctgaagaacaagtatgg 209
>emb|CR708819.2|CNS0G9VJ Tetraodon nigroviridis full-length cDNA Length = 395 Score = 58.0 bits (29), Expect = 3e-05 Identities = 101/125 (80%) Strand = Plus / Plus Query: 140 ctggcttgcctggacggttatatgaacattgcgatggagcaaaccgaagagtacgtgaac 199 |||||||| |||| ||||| ||||||||||| || || ||||| ||||| || || || Sbjct: 110 ctggcttgtttggatggttacatgaacattgccatcgaacaaactgaagaatatgtaaat 169 Query: 200 ggccaactgaagaacaaatatggtgacgctttcataagaggcaacaacgtcctctacatc 259 ||||| || |||||||| ||||| || ||||| | || || ||||| || ||||||||| Sbjct: 170 ggccagctcaagaacaagtatggcgatgcttttctgaggggaaacaatgttctctacatc 229 Query: 260 agcac 264 ||||| Sbjct: 230 agcac 234
>gb|AY113474.1| Drosophila melanogaster RE43665 full insert cDNA Length = 490 Score = 58.0 bits (29), Expect = 3e-05 Identities = 71/85 (83%) Strand = Plus / Plus Query: 174 tggagcaaaccgaagagtacgtgaacggccaactgaagaacaaatatggtgacgctttca 233 ||||||| || || ||||||||||| || || ||||||||||| || || ||||| |||| Sbjct: 230 tggagcagacggaggagtacgtgaatgggcagctgaagaacaagtacggcgacgccttca 289 Query: 234 taagaggcaacaacgtcctctacat 258 | | |||||||| ||||||||||| Sbjct: 290 tccgcggcaacaatgtcctctacat 314
>ref|NM_137684.1| Drosophila melanogaster CG9344-RA (CG9344), mRNA Length = 471 Score = 58.0 bits (29), Expect = 3e-05 Identities = 71/85 (83%) Strand = Plus / Plus Query: 174 tggagcaaaccgaagagtacgtgaacggccaactgaagaacaaatatggtgacgctttca 233 ||||||| || || ||||||||||| || || ||||||||||| || || ||||| |||| Sbjct: 230 tggagcagacggaggagtacgtgaatgggcagctgaagaacaagtacggcgacgccttca 289 Query: 234 taagaggcaacaacgtcctctacat 258 | | |||||||| ||||||||||| Sbjct: 290 tccgcggcaacaatgtcctctacat 314
>gb|AC007888.7|AC007888 Drosophila melanogaster, chromosome 2R, region 57B6-57B13, BAC clone BACR10P11, complete sequence Length = 164035 Score = 58.0 bits (29), Expect = 3e-05 Identities = 71/85 (83%) Strand = Plus / Minus Query: 174 tggagcaaaccgaagagtacgtgaacggccaactgaagaacaaatatggtgacgctttca 233 ||||||| || || ||||||||||| || || ||||||||||| || || ||||| |||| Sbjct: 58785 tggagcagacggaggagtacgtgaatgggcagctgaagaacaagtacggcgacgccttca 58726 Query: 234 taagaggcaacaacgtcctctacat 258 | | |||||||| ||||||||||| Sbjct: 58725 tccgcggcaacaatgtcctctacat 58701
>gb|AE003452.5| Drosophila melanogaster chromosome 2R, section 60 of 73 of the complete sequence Length = 303438 Score = 58.0 bits (29), Expect = 3e-05 Identities = 71/85 (83%) Strand = Plus / Plus Query: 174 tggagcaaaccgaagagtacgtgaacggccaactgaagaacaaatatggtgacgctttca 233 ||||||| || || ||||||||||| || || ||||||||||| || || ||||| |||| Sbjct: 192483 tggagcagacggaggagtacgtgaatgggcagctgaagaacaagtacggcgacgccttca 192542 Query: 234 taagaggcaacaacgtcctctacat 258 | | |||||||| ||||||||||| Sbjct: 192543 tccgcggcaacaatgtcctctacat 192567
>gb|AC005268.1|AC005268 Drosophila melanogaster DNA sequence (P1s DS03550 (D225) and DS02397 (D206)), complete sequence Length = 89791 Score = 58.0 bits (29), Expect = 3e-05 Identities = 71/85 (83%) Strand = Plus / Minus Query: 174 tggagcaaaccgaagagtacgtgaacggccaactgaagaacaaatatggtgacgctttca 233 ||||||| || || ||||||||||| || || ||||||||||| || || ||||| |||| Sbjct: 87246 tggagcagacggaggagtacgtgaatgggcagctgaagaacaagtacggcgacgccttca 87187 Query: 234 taagaggcaacaacgtcctctacat 258 | | |||||||| ||||||||||| Sbjct: 87186 tccgcggcaacaatgtcctctacat 87162
>gb|BC072549.1| Danio rerio zgc:92379, mRNA (cDNA clone MGC:92379 IMAGE:7036390), complete cds Length = 485 Score = 56.0 bits (28), Expect = 1e-04 Identities = 94/116 (81%) Strand = Plus / Plus Query: 107 aaactcaactcgggcgtcgactaccgaggtattctggcttgcctggacggttatatgaac 166 ||||| ||||| || ||||| ||| |||| | ||||| ||||| ||||| || ||||| Sbjct: 99 aaactgaactctggtgtcgattacagaggagtcctggcctgccttgacggctacatgaat 158 Query: 167 attgcgatggagcaaaccgaagagtacgtgaacggccaactgaagaacaaatatgg 222 |||||| |||| || || || || || || |||||||||||||||||||| ||||| Sbjct: 159 attgcggtggaacagacagaggaatatgtcaacggccaactgaagaacaagtatgg 214
>ref|XM_689037.1| PREDICTED: Danio rerio similar to U6 snRNA-associated Sm-like protein LSm6 (LOC573495), mRNA Length = 477 Score = 56.0 bits (28), Expect = 1e-04 Identities = 94/116 (81%) Strand = Plus / Plus Query: 107 aaactcaactcgggcgtcgactaccgaggtattctggcttgcctggacggttatatgaac 166 ||||| ||||| || ||||| ||| |||| | ||||| ||||| ||||| || ||||| Sbjct: 118 aaactgaactctggtgtcgattacagaggagtcctggcctgccttgacggctacatgaat 177 Query: 167 attgcgatggagcaaaccgaagagtacgtgaacggccaactgaagaacaaatatgg 222 |||||| |||| || || || || || || |||||||||||||||||||| ||||| Sbjct: 178 attgcggtggaacagacagaggaatatgtcaacggccaactgaagaacaagtatgg 233
>ref|NM_001002077.1| Danio rerio zgc:92379 (zgc:92379), mRNA Length = 485 Score = 56.0 bits (28), Expect = 1e-04 Identities = 94/116 (81%) Strand = Plus / Plus Query: 107 aaactcaactcgggcgtcgactaccgaggtattctggcttgcctggacggttatatgaac 166 ||||| ||||| || ||||| ||| |||| | ||||| ||||| ||||| || ||||| Sbjct: 99 aaactgaactctggtgtcgattacagaggagtcctggcctgccttgacggctacatgaat 158 Query: 167 attgcgatggagcaaaccgaagagtacgtgaacggccaactgaagaacaaatatgg 222 |||||| |||| || || || || || || |||||||||||||||||||| ||||| Sbjct: 159 attgcggtggaacagacagaggaatatgtcaacggccaactgaagaacaagtatgg 214
>emb|BX324156.6| Zebrafish DNA sequence from clone CH211-215C3 in linkage group 1, complete sequence Length = 214471 Score = 54.0 bits (27), Expect = 5e-04 Identities = 69/83 (83%) Strand = Plus / Plus Query: 140 ctggcttgcctggacggttatatgaacattgcgatggagcaaaccgaagagtacgtgaac 199 ||||| ||||| ||||| || ||||| |||||| |||| || || || || || || ||| Sbjct: 184334 ctggcctgccttgacggctacatgaatattgcggtggaacagacagaggaatatgtcaac 184393 Query: 200 ggccaactgaagaacaaatatgg 222 ||||||||||||||||| ||||| Sbjct: 184394 ggccaactgaagaacaagtatgg 184416
>emb|CR701911.1|CNS0G4JN Tetraodon nigroviridis full-length cDNA Length = 898 Score = 50.1 bits (25), Expect = 0.008 Identities = 100/125 (80%) Strand = Plus / Plus Query: 140 ctggcttgcctggacggttatatgaacattgcgatggagcaaaccgaagagtacgtgaac 199 |||||||| |||| ||||| ||||||||||| || || ||||| ||||| || || || Sbjct: 652 ctggcttgtttggatggttacatgaacattgccatcgaacaaactgaagaatatgtaaat 711 Query: 200 ggccaactgaagaacaaatatggtgacgctttcataagaggcaacaacgtcctctacatc 259 ||||| || |||||||| ||||| || ||||| | || || ||||| || ||||||||| Sbjct: 712 ggccagctcaagaacaagtatggggatgcttttctgaggggaaacaatgttctctacatc 771 Query: 260 agcac 264 |||| Sbjct: 772 cgcac 776
>ref|XM_969082.1| PREDICTED: Tribolium castaneum similar to CG9344-PA (LOC663017), mRNA Length = 240 Score = 48.1 bits (24), Expect = 0.030 Identities = 63/76 (82%) Strand = Plus / Plus Query: 132 gaggtattctggcttgcctggacggttatatgaacattgcgatggagcaaaccgaagagt 191 ||||| || ||||||| || || || || |||||||| ||| ||||||||||||| || | Sbjct: 89 gaggtgttttggcttgtctcgatggctacatgaacatagcgttggagcaaaccgaggaat 148 Query: 192 acgtgaacggccaact 207 |||| ||||| ||||| Sbjct: 149 acgtcaacggacaact 164
>ref|XM_794153.1| PREDICTED: Strongylocentrotus purpuratus similar to U6 snRNA-associated Sm-like protein LSm6 (LOC594723), mRNA Length = 827 Score = 48.1 bits (24), Expect = 0.030 Identities = 84/104 (80%) Strand = Plus / Plus Query: 158 tatatgaacattgcgatggagcaaaccgaagagtacgtgaacggccaactgaagaacaaa 217 |||||||||||||| ||||||| || || ||||| || || || || || || |||||| Sbjct: 306 tatatgaacattgccttggagcagacggaggagtatgtcaatggtcagctcaaaaacaaa 365 Query: 218 tatggtgacgctttcataagaggcaacaacgtcctctacatcag 261 ||||| || |||||||| ||||| || || || || |||||||| Sbjct: 366 tatggagatgctttcatcagaggaaataatgtgctatacatcag 409
>ref|XM_420431.1| PREDICTED: Gallus gallus similar to U6 snRNA-associated Sm-like protein LSm6 (Sm protein F) (LOC422466), mRNA Length = 2047 Score = 46.1 bits (23), Expect = 0.12 Identities = 86/107 (80%) Strand = Plus / Plus Query: 122 gtcgactaccgaggtattctggcttgcctggacggttatatgaacattgcgatggagcaa 181 ||||| || |||||| | |||||||||||||| || |||||||| || || |||| || Sbjct: 1684 gtcgattatcgaggtgtcctggcttgcctggatgggtatatgaatatagctctggaacag 1743 Query: 182 accgaagagtacgtgaacggccaactgaagaacaaatatggtgacgc 228 || ||||| ||||| || || ||| | |||||||| ||||| ||||| Sbjct: 1744 acagaagaatacgtaaatggacaattaaagaacaagtatggggacgc 1790
>ref|XM_954642.1| Neurospora crassa OR74A hypothetical protein (NCU05760.1) partial mRNA Length = 699 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Plus Query: 22 cggcagcggcggcggaggtgctggtgg 48 |||| |||||||||||||||||||||| Sbjct: 546 cggcggcggcggcggaggtgctggtgg 572
>ref|XM_325614.1| Neurospora crassa OR74A hypothetical protein (NCU05760.1) partial mRNA Length = 699 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Plus Query: 22 cggcagcggcggcggaggtgctggtgg 48 |||| |||||||||||||||||||||| Sbjct: 546 cggcggcggcggcggaggtgctggtgg 572
>gb|AC124494.4| Mus musculus BAC clone RP23-464P12 from chromosome 13, complete sequence Length = 204177 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Minus Query: 22 cggcagcggcggcggaggtgctggtgg 48 |||||||||||||||||||| |||||| Sbjct: 54012 cggcagcggcggcggaggtgatggtgg 53986
>gb|AC106128.6| Rattus norvegicus 1 BAC CH230-149H17 (Children's Hospital Oakland Research Institute) complete sequence Length = 210385 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Minus Query: 22 cggcagcggcggcggaggtgctggtgg 48 |||||||||||||||||||| |||||| Sbjct: 150983 cggcagcggcggcggaggtggtggtgg 150957
>gb|DQ213792.1| Taeniopygia guttata clone 0065P0015B08 LSM6-like U6 small nuclear RNA associated-like mRNA, complete sequence Length = 455 Score = 44.1 bits (22), Expect = 0.47 Identities = 34/38 (89%) Strand = Plus / Plus Query: 131 cgaggtattctggcttgcctggacggttatatgaacat 168 |||||| | |||||||||||||| || ||||||||||| Sbjct: 148 cgaggtgtcctggcttgcctggatggatatatgaacat 185
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 256 catcagcacgtcgaagcggcc 276 ||||||||||||||||||||| Sbjct: 2233337 catcagcacgtcgaagcggcc 2233357
>gb|AC112209.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0030I09 map C83B, complete sequence Length = 123477 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 366 tgtggtgaactggtgatctga 386 ||||||||||||||||||||| Sbjct: 36212 tgtggtgaactggtgatctga 36192
>gb|AC128768.4| Rattus norvegicus 1 BAC CH230-445L3 (Children's Hospital Oakland Research Institute) complete sequence Length = 156228 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 402 tcactctcgtacctgctgtctgcta 426 |||||| |||||||||||||||||| Sbjct: 117712 tcactcacgtacctgctgtctgcta 117688
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 21 ccggcagcggcggcggaggtg 41 ||||||||||||||||||||| Sbjct: 10066120 ccggcagcggcggcggaggtg 10066100 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 20 tccggcagcggcggcggagg 39 |||||||||||||||||||| Sbjct: 17032174 tccggcagcggcggcggagg 17032193
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 366 tgtggtgaactggtgatctga 386 ||||||||||||||||||||| Sbjct: 2586192 tgtggtgaactggtgatctga 2586212
>ref|XM_315329.2| Anopheles gambiae str. PEST ENSANGP00000021121 (ENSANGG00000018632), mRNA Length = 380 Score = 42.1 bits (21), Expect = 1.9 Identities = 87/109 (79%) Strand = Plus / Plus Query: 150 tggacggttatatgaacattgcgatggagcaaaccgaagagtacgtgaacggccaactga 209 ||||||| || ||||||||||| |||| || || ||||||||||| || || || |||| Sbjct: 189 tggacggctacatgaacattgccctggaccagacggaagagtacgtaaatgggcagctga 248 Query: 210 agaacaaatatggtgacgctttcataagaggcaacaacgtcctctacat 258 | ||||| || || || || ||||| | |||||||| || |||||||| Sbjct: 249 aaaacaagtacggcgatgcgttcatccgcggcaacaatgtactctacat 297
>ref|XM_310462.2| Anopheles gambiae str. PEST ENSANGP00000007331 (ENSANGG00000005528), partial mRNA Length = 621 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 24 gcagcggcggcggaggtgctggtgg 48 |||||||||||||||||| |||||| Sbjct: 383 gcagcggcggcggaggtggtggtgg 359
>gb|AY609906.1| Sus scrofa clone Clu_4190.scr.msk.p1.Contig2, mRNA sequence Length = 753 Score = 42.1 bits (21), Expect = 1.9 Identities = 63/77 (81%) Strand = Plus / Plus Query: 140 ctggcttgcctggacggttatatgaacattgcgatggagcaaaccgaagagtacgtgaac 199 ||||| ||||||||||| || |||||||| || |||| || || || ||||| || ||| Sbjct: 278 ctggcgtgcctggacggctacatgaacatagccttggaacagacggaggagtatgtaaac 337 Query: 200 ggccaactgaagaacaa 216 || || ||||||||||| Sbjct: 338 ggacagctgaagaacaa 354
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 366 tgtggtgaactggtgatctga 386 ||||||||||||||||||||| Sbjct: 2595223 tgtggtgaactggtgatctga 2595243
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 21 ccggcagcggcggcggaggtg 41 ||||||||||||||||||||| Sbjct: 10066005 ccggcagcggcggcggaggtg 10065985 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 20 tccggcagcggcggcggagg 39 |||||||||||||||||||| Sbjct: 16985550 tccggcagcggcggcggagg 16985569
>emb|AL731739.4|CNS08C7O Oryza sativa chromosome 12, . BAC OSJNBa0056I18 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 145890 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 21 ccggcagcggcggcggaggtg 41 ||||||||||||||||||||| Sbjct: 96501 ccggcagcggcggcggaggtg 96521
>emb|Y00661.1|HSBCR Human bcr mRNA (break point cluster gene) Length = 4714 Score = 42.1 bits (21), Expect = 1.9 Identities = 30/33 (90%) Strand = Plus / Plus Query: 22 cggcagcggcggcggaggtgctggtgggccggt 54 ||||||||||||||| || ||||||||| |||| Sbjct: 219 cggcagcggcggcggcggggctggtggggcggt 251
>gb|AY570293.2| Mus musculus Muc19 precursor mRNA, complete cds Length = 22806 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 29 ggcggcggaggtgctggtgg 48 |||||||||||||||||||| Sbjct: 4138 ggcggcggaggtgctggtgg 4119
>ref|XM_462679.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1545 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 22 cggcagcggcggcggaggtgctggtggg 49 |||| ||||||||||||||| ||||||| Sbjct: 420 cggcggcggcggcggaggtggtggtggg 447
>ref|NM_207243.2| Mus musculus mucin 19 (Muc19), mRNA Length = 22806 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 29 ggcggcggaggtgctggtgg 48 |||||||||||||||||||| Sbjct: 4138 ggcggcggaggtgctggtgg 4119
>ref|XM_473734.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1545 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 22 cggcagcggcggcggaggtgctggtggg 49 |||| ||||||||||||||| ||||||| Sbjct: 420 cggcggcggcggcggaggtggtggtggg 447
>ref|XM_001003036.1| PREDICTED: Mus musculus mucin 19 (Muc19), mRNA Length = 10223 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 29 ggcggcggaggtgctggtgg 48 |||||||||||||||||||| Sbjct: 3795 ggcggcggaggtgctggtgg 3776
>ref|XM_909167.2| PREDICTED: Mus musculus mucin 19 (Muc19), mRNA Length = 6838 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 29 ggcggcggaggtgctggtgg 48 |||||||||||||||||||| Sbjct: 3516 ggcggcggaggtgctggtgg 3497
>ref|XM_992108.1| PREDICTED: Mus musculus similar to mucin 19 (LOC667734), mRNA Length = 8317 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 29 ggcggcggaggtgctggtgg 48 |||||||||||||||||||| Sbjct: 3615 ggcggcggaggtgctggtgg 3596
>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome Length = 2462499 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 20 tccggcagcggcggcggagg 39 |||||||||||||||||||| Sbjct: 170849 tccggcagcggcggcggagg 170868 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 20 tccggcagcggcggcggagg 39 |||||||||||||||||||| Sbjct: 170822 tccggcagcggcggcggagg 170841
>emb|BX294155.1| Pirellula sp. strain 1 complete genome; segment 23/24 Length = 306550 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 gcggcggcggaggtgctggt 46 |||||||||||||||||||| Sbjct: 80044 gcggcggcggaggtgctggt 80063
>emb|AL939113.1|SCO939113 Streptomyces coelicolor A3(2) complete genome; segment 10/29 Length = 310550 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 27 gcggcggcggaggtgctggtgggc 50 |||||||||| ||||||||||||| Sbjct: 227139 gcggcggcggtggtgctggtgggc 227162
>emb|AL731614.4|OSJN00260 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0079F16, complete sequence Length = 157801 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 22 cggcagcggcggcggaggtg 41 |||||||||||||||||||| Sbjct: 36024 cggcagcggcggcggaggtg 36005
>emb|AL162508.1|ATT7H20 Arabidopsis thaliana DNA chromosome 5, BAC clone T7H20 (ESSA project) Length = 87581 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 470 atgttatctgtgttttttag 489 |||||||||||||||||||| Sbjct: 32998 atgttatctgtgttttttag 33017
>gb|AC108480.3| Drosophila melanogaster X BAC RP98-2A13 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 175996 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 gcgatggagcaaaccgaaga 189 |||||||||||||||||||| Sbjct: 76916 gcgatggagcaaaccgaaga 76935
>tpg|BK005040.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) WRKY transcription factor 37 (WRKY37) gene, complete cds Length = 3091 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 22 cggcagcggcggcggaggtgctggtggg 49 |||| ||||||||||||||| ||||||| Sbjct: 345 cggcggcggcggcggaggtggtggtggg 372
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 22 cggcagcggcggcggaggtg 41 |||||||||||||||||||| Sbjct: 3399150 cggcagcggcggcggaggtg 3399169
>gb|AC025726.2| Caenorhabditis elegans cosmid Y71G12B, complete sequence Length = 191954 Score = 40.1 bits (20), Expect = 7.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 110 ctcaactcgggcgtcgactaccgaggtattct 141 |||||||| |||||||||||||| || ||||| Sbjct: 61011 ctcaactctggcgtcgactaccgtggcattct 61042
>emb|CR390394.1| Gallus gallus finished cDNA, clone ChEST423j16 Length = 762 Score = 40.1 bits (20), Expect = 7.4 Identities = 38/44 (86%) Strand = Plus / Plus Query: 122 gtcgactaccgaggtattctggcttgcctggacggttatatgaa 165 ||||| || |||||| | |||||||||||||| || |||||||| Sbjct: 399 gtcgattatcgaggtgtcctggcttgcctggatgggtatatgaa 442
>gb|AC010843.10|AC010843 Drosophila melanogaster, chromosome X, region 12A-12A, BAC clone BACR08A22, complete sequence Length = 170914 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 29 ggcggcggaggtgctggtgg 48 |||||||||||||||||||| Sbjct: 101018 ggcggcggaggtgctggtgg 100999
>emb|CR354038.1| Gallus gallus finished cDNA, clone ChEST463i2 Length = 753 Score = 40.1 bits (20), Expect = 7.4 Identities = 38/44 (86%) Strand = Plus / Plus Query: 122 gtcgactaccgaggtattctggcttgcctggacggttatatgaa 165 ||||| || |||||| | |||||||||||||| || |||||||| Sbjct: 390 gtcgattatcgaggtgtcctggcttgcctggatgggtatatgaa 433
>emb|CR353169.1| Gallus gallus finished cDNA, clone ChEST781b6 Length = 482 Score = 40.1 bits (20), Expect = 7.4 Identities = 38/44 (86%) Strand = Plus / Plus Query: 122 gtcgactaccgaggtattctggcttgcctggacggttatatgaa 165 ||||| || |||||| | |||||||||||||| || |||||||| Sbjct: 117 gtcgattatcgaggtgtcctggcttgcctggatgggtatatgaa 160
>gb|AC010995.11|AC010995 Drosophila melanogaster, chromosome X, region 12A-12A, BAC clone BACR30C16, complete sequence Length = 185810 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 29 ggcggcggaggtgctggtgg 48 |||||||||||||||||||| Sbjct: 3356 ggcggcggaggtgctggtgg 3337
>gb|AC099053.2| Homo sapiens chromosome 3 clone RP11-464H2, complete sequence Length = 200069 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 aggtattctggcttgcctgg 152 |||||||||||||||||||| Sbjct: 118093 aggtattctggcttgcctgg 118112
>dbj|AP004840.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0544B02 Length = 156339 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 22 cggcagcggcggcggaggtgctgg 45 ||||||||||||||| |||||||| Sbjct: 106929 cggcagcggcggcggcggtgctgg 106952
>dbj|AK110722.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-170-E01, full insert sequence Length = 1079 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 22 cggcagcggcggcggaggtgctgg 45 ||||||||||||||| |||||||| Sbjct: 222 cggcagcggcggcggcggtgctgg 245
>dbj|AK108886.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-152-D12, full insert sequence Length = 932 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 22 cggcagcggcggcggaggtg 41 |||||||||||||||||||| Sbjct: 52 cggcagcggcggcggaggtg 71
>dbj|AK108523.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-144-B06, full insert sequence Length = 1050 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 20 tccggcagcggcggcggagg 39 |||||||||||||||||||| Sbjct: 482 tccggcagcggcggcggagg 501
>dbj|AK073070.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033013H23, full insert sequence Length = 1524 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 22 cggcagcggcggcggaggtg 41 |||||||||||||||||||| Sbjct: 14 cggcagcggcggcggaggtg 33
>gb|AE003492.3| Drosophila melanogaster chromosome X, section 44 of 74 of the complete sequence Length = 296756 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 29 ggcggcggaggtgctggtgg 48 |||||||||||||||||||| Sbjct: 252759 ggcggcggaggtgctggtgg 252740
>gb|AE003427.3| Drosophila melanogaster chromosome X, section 11 of 74 of the complete sequence Length = 213230 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 170 gcgatggagcaaaccgaaga 189 |||||||||||||||||||| Sbjct: 127500 gcgatggagcaaaccgaaga 127481
>dbj|AK115117.1| Ciona intestinalis cDNA, clone:cieg032o21, full insert sequence Length = 1224 Score = 40.1 bits (20), Expect = 7.4 Identities = 128/164 (78%) Strand = Plus / Plus Query: 101 gtcgttaaactcaactcgggcgtcgactaccgaggtattctggcttgcctggacggttat 160 ||||| ||||||||||| || || || ||| ||||| |||| || ||| |||| || || Sbjct: 758 gtcgtcaaactcaactctggggttgattacagaggtgttcttgcgtgcttggatggctac 817 Query: 161 atgaacattgcgatggagcaaaccgaagagtacgtgaacggccaactgaagaacaaatat 220 |||||||| || | || ||||| ||||| || ||||| || || | |||||||| || Sbjct: 818 atgaacatagctcttgaacaaacagaagaatatgtgaatggtcagttaaagaacaagtac 877 Query: 221 ggtgacgctttcataagaggcaacaacgtcctctacatcagcac 264 || || || || || ||||||||||| || ||||||||||||| Sbjct: 878 ggagatgcatttatcagaggcaacaatgtgttctacatcagcac 921
>emb|AL607004.4|OSJN00129 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNba0093F12, complete sequence Length = 186142 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 22 cggcagcggcggcggaggtgctggtggg 49 |||| ||||||||||||||| ||||||| Sbjct: 63845 cggcggcggcggcggaggtggtggtggg 63872
>emb|AL713941.3|CNS07YP9 Oryza sativa chromosome 12, . BAC OSJNBa0006M08 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 136254 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 20 tccggcagcggcggcggagg 39 |||||||||||||||||||| Sbjct: 116569 tccggcagcggcggcggagg 116550
>dbj|AP004625.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT14E05b, TM0089b, complete sequence Length = 126514 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 356 gattattggttgtggtgaac 375 |||||||||||||||||||| Sbjct: 53236 gattattggttgtggtgaac 53217
>gb|AC101660.25| Mus musculus chromosome 15, clone RP23-4I22, complete sequence Length = 188464 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 29 ggcggcggaggtgctggtgg 48 |||||||||||||||||||| Sbjct: 45567 ggcggcggaggtgctggtgg 45586
>dbj|AB070343.1| Volvox carteri f. nagariensis lsg1 mRNA for PR-1 like protein, complete cds Length = 2560 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 29 ggcggcggaggtgctggtgg 48 |||||||||||||||||||| Sbjct: 883 ggcggcggaggtgctggtgg 864 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,621,882 Number of Sequences: 3902068 Number of extensions: 3621882 Number of successful extensions: 79227 Number of sequences better than 10.0: 100 Number of HSP's better than 10.0 without gapping: 104 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 78164 Number of HSP's gapped (non-prelim): 1059 length of query: 543 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 520 effective length of database: 17,143,297,704 effective search space: 8914514806080 effective search space used: 8914514806080 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
