ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags39h18 |
|---|---|
| Clone Library Name | barley_pub |
>YE7A_SCHPO (O14162) Hypothetical protein C4A8.10 in chromosome I| Length = 723 Score = 52.4 bits (124), Expect = 1e-06 Identities = 46/155 (29%), Positives = 72/155 (46%), Gaps = 2/155 (1%) Frame = +3 Query: 12 ISFVAHSVGGLVARYAIGRLYRPPRQALANCPQSLRDSNRGNIHGLEAVNFITVASPHLG 191 IS VAHS+GGLV YA+G ++ A + V F+T+A+P LG Sbjct: 322 ISVVAHSLGGLVQTYAVGYVHAKTHGAF--------------FQAIHPVFFVTLATPWLG 367 Query: 192 SRGNKQVPFLFGVTAIEKFACCIIHLIFRRTGKHLFLT--DNDDGKPPLLQCMVDDSGDL 365 G + P G + + I +TG+ L LT ++ P L M D S Sbjct: 368 VAG--EHPSYIGK--------ALSYGIIGKTGQDLSLTPLNHSIESRPFLVLMSDPS--T 415 Query: 366 RFISALQAFQRRVAYSNVGYDHIVGWRTSSIRGAS 470 F A+ F++R+ ++N D+IV + TS++ +S Sbjct: 416 PFFQAVSFFEKRILFANTTNDYIVPFGTSAMEVSS 450
>YGO4_YEAST (P53118) Hypothetical 78.1 kDa protein in TIP20-MRF1 intergenic| region Length = 685 Score = 50.4 bits (119), Expect = 4e-06 Identities = 49/156 (31%), Positives = 69/156 (44%), Gaps = 4/156 (2%) Frame = +3 Query: 3 ITKISFVAHSVGGLVARYAIGRLYRPPRQALANCPQSLRDSNRGNIHGLEAVNFITVASP 182 I KISFV HS+GGL+ +AI +Y P + N +NFIT+ASP Sbjct: 260 IRKISFVGHSLGGLIQAFAIAYIYEV-------YPWFFKKVN--------PINFITLASP 304 Query: 183 HLG----SRGNKQVPFLFGVTAIEKFACCIIHLIFRRTGKHLFLTDNDDGKPPLLQCMVD 350 LG + +V FGV +TG+ L L ++ + PLL + Sbjct: 305 LLGIVTDNPAYIKVLLSFGVIG--------------KTGQDLGLENDVEVGKPLLYLL-- 348 Query: 351 DSGDLRFISALQAFQRRVAYSNVGYDHIVGWRTSSI 458 L I L+ F+RR Y+N D IV T+S+ Sbjct: 349 --SGLPLIEILRRFKRRTVYANAINDGIVPLYTASL 382
>PUR5_SYNPX (Q7U4N8) Phosphoribosylformylglycinamidine cyclo-ligase (EC| 6.3.3.1) (AIRS) (Phosphoribosyl-aminoimidazole synthetase) (AIR synthase) Length = 343 Score = 33.1 bits (74), Expect = 0.62 Identities = 25/69 (36%), Positives = 32/69 (46%) Frame = -1 Query: 490 STHLGSSEAPLIDDVLHPTI*S*PTLEYATLR*NACKADMNRRSPESSTIHCNNGGFPSS 311 ST G + PLIDD+L PT YA+L K ++ P + H GG P + Sbjct: 203 STLYGPDQRPLIDDLLR------PTQLYASL----VKHLLSSSLPIHAMAHITGGGLPEN 252 Query: 310 LSVRNRCLP 284 L RCLP Sbjct: 253 LP---RCLP 258
>NHS_HUMAN (Q6T4R5) Nance-Horan syndrome protein (Congenital cataracts and| dental anomalies protein) Length = 1630 Score = 31.2 bits (69), Expect = 2.4 Identities = 17/56 (30%), Positives = 30/56 (53%) Frame = +3 Query: 69 LYRPPRQALANCPQSLRDSNRGNIHGLEAVNFITVASPHLGSRGNKQVPFLFGVTA 236 L +PP + A PQS D+++G+ G EA++ ++ SP + + G F +A Sbjct: 1524 LPKPPGELTAESPQSTDDAHQGS-QGAEALSPLSPCSPRVNAEGFSSKSFATSASA 1578
>CJ046_RAT (Q5XI53) Protein C10orf46 homolog| Length = 347 Score = 30.4 bits (67), Expect = 4.0 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%) Frame = -2 Query: 594 CSYPCPCQQH-QHIDQEILLWIVPHIQYVDKSCLSNQPTWVVRR 466 C Y C CQQH + + +++ I H++ V K ++ P + R Sbjct: 174 CVYKCVCQQHSEQMYSDLIKKITSHLERVSKELQASPPDLYIER 217
>CJ046_MOUSE (Q8R0X2) Protein C10orf46 homolog| Length = 377 Score = 30.4 bits (67), Expect = 4.0 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%) Frame = -2 Query: 594 CSYPCPCQQH-QHIDQEILLWIVPHIQYVDKSCLSNQPTWVVRR 466 C Y C CQQH + + +++ I H++ V K ++ P + R Sbjct: 174 CVYKCVCQQHSEQMYSDLIKKITSHLERVSKELQASPPDLYIER 217
>CJ046_HUMAN (Q86Y37) Protein C10orf46| Length = 369 Score = 30.0 bits (66), Expect = 5.3 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%) Frame = -2 Query: 594 CSYPCPCQQH-QHIDQEILLWIVPHIQYVDKSCLSNQPTWVVRR 466 C Y C CQQH + + +++ I H++ V K ++ P + R Sbjct: 166 CVYKCVCQQHSEQMYSDLIKKITNHLERVSKELQASPPDLYIER 209
>R1AB_CVMA5 (P16342) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase Length = 7176 Score = 29.6 bits (65), Expect = 6.9 Identities = 12/29 (41%), Positives = 19/29 (65%) Frame = +3 Query: 510 PHIVYEELSKAESLDQCADVADMDKDNCT 596 PHIV ++LSK LD C + D+++C+ Sbjct: 4566 PHIVRKDLSKFTMLDLCYALRHFDRNDCS 4594
>R1AB_CVMJH (P19751) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase Length = 7180 Score = 29.6 bits (65), Expect = 6.9 Identities = 12/29 (41%), Positives = 19/29 (65%) Frame = +3 Query: 510 PHIVYEELSKAESLDQCADVADMDKDNCT 596 PHIV ++LSK LD C + D+++C+ Sbjct: 4572 PHIVRKDLSKFTMLDLCYALRHFDRNDCS 4600
>R1AB_CVM2 (Q9PYA3) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase ( Length = 7124 Score = 29.6 bits (65), Expect = 6.9 Identities = 12/29 (41%), Positives = 19/29 (65%) Frame = +3 Query: 510 PHIVYEELSKAESLDQCADVADMDKDNCT 596 PHIV ++LSK LD C + D+++C+ Sbjct: 4514 PHIVRKDLSKYTMLDLCYALRHFDRNDCS 4542
>LIN12_CAEEL (P14585) Protein lin-12 precursor (Abnormal cell lineage protein| 12) Length = 1429 Score = 29.6 bits (65), Expect = 6.9 Identities = 15/61 (24%), Positives = 26/61 (42%) Frame = -1 Query: 385 CKADMNRRSPESSTIHCNNGGFPSSLSVRNRCLPVLLNIK*MMQHANFSIAVTPKRKGTC 206 C +++ P+ +++C NGGF S + +C P + S A P G C Sbjct: 205 CFLEISADHPDGRSMYCQNGGFCDKASSKCQCPPGYHGSTCELLEKEDSCASNPCSHGVC 264 Query: 205 L 203 + Sbjct: 265 I 265 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 88,567,379 Number of Sequences: 219361 Number of extensions: 1838219 Number of successful extensions: 4951 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 4794 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4946 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5196311029 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
