ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags39g08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ACCD_MYCTU (P63405) Putative acetyl-coenzyme A carboxylase carbo... 30 3.6
2ACCD_MYCBO (P63406) Putative acetyl-coenzyme A carboxylase carbo... 30 3.6
3NIFD_RHOCA (P08717) Nitrogenase molybdenum-iron protein alpha ch... 30 4.8
4AGC1_ASHGO (Q75AH6) Mitochondrial aspartate-glutamate transporte... 30 4.8
5ITB7_HUMAN (P26010) Integrin beta-7 precursor 30 4.8
6G3PA_ARATH (P25856) Glyceraldehyde-3-phosphate dehydrogenase A, ... 30 6.2
7PLCG1_HUMAN (P19174) 1-phosphatidylinositol-4,5-bisphosphate pho... 29 8.1
8YQC1_SCHPO (O74463) Hypothetical protein C1739.01 in chromosome III 29 8.1
9XYNA_CLOSR (P33558) Endo-1,4-beta-xylanase A precursor (EC 3.2.1... 29 8.1
10PLCG1_MOUSE (Q62077) 1-phosphatidylinositol-4,5-bisphosphate pho... 29 8.1

>ACCD_MYCTU (P63405) Putative acetyl-coenzyme A carboxylase carboxyl|
           transferase subunit beta (EC 6.4.1.2) (ACCase beta
           chain)
          Length = 495

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +2

Query: 35  STPVAFPLASSRLFSTDASGAVAGSQDDSSSGEGHTYGR 151
           S P+A P+A S      A+ A  G+ +   +GEG  +GR
Sbjct: 24  SEPLAVPVADSYARELAAARAATGADESVQTGEGRVFGR 62



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>ACCD_MYCBO (P63406) Putative acetyl-coenzyme A carboxylase carboxyl|
           transferase subunit beta (EC 6.4.1.2) (ACCase beta
           chain)
          Length = 495

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +2

Query: 35  STPVAFPLASSRLFSTDASGAVAGSQDDSSSGEGHTYGR 151
           S P+A P+A S      A+ A  G+ +   +GEG  +GR
Sbjct: 24  SEPLAVPVADSYARELAAARAATGADESVQTGEGRVFGR 62



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>NIFD_RHOCA (P08717) Nitrogenase molybdenum-iron protein alpha chain (EC|
           1.18.6.1) (Nitrogenase component I) (Dinitrogenase)
          Length = 499

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
 Frame = +2

Query: 392 EHKISLNGKAVLLQGVPRSAQA----DDIERFLCGTNYEPPPFENFVRAG 529
           ++K  L GK+V+L   PRSA      DD+   + GT YE    +++ R G
Sbjct: 354 KYKPRLEGKSVMLYVRPRSAPRRHAYDDLGMVIAGTGYEFAHNDDYKRTG 403



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>AGC1_ASHGO (Q75AH6) Mitochondrial aspartate-glutamate transporter AGC1|
           (Aspartate-glutamate carrier 1)
          Length = 911

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +3

Query: 18  PGRAL-TRPQWHFPLHPLVSFQPTHPAP*RDHRTTHRPAK 134
           P R L + PQ+ F L     F    PAP  D  TTHRP +
Sbjct: 782 PARVLRSSPQFGFTLAAYEIFHNLFPAPRYDDSTTHRPTR 821



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>ITB7_HUMAN (P26010) Integrin beta-7 precursor|
          Length = 798

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 13/31 (41%), Positives = 13/31 (41%)
 Frame = -2

Query: 266 CNQSSHHPVTVHIGQGNG*CQSSACSCQDGR 174
           CN S   P   H   G G  Q   CSC  GR
Sbjct: 476 CNCSDTQPQAPHCSDGQGHLQCGVCSCAPGR 506



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>G3PA_ARATH (P25856) Glyceraldehyde-3-phosphate dehydrogenase A, chloroplast|
           precursor (EC 1.2.1.13) (NADP-dependent
           glyceraldehydephosphate dehydrogenase subunit A)
          Length = 396

 Score = 29.6 bits (65), Expect = 6.2
 Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 7/105 (6%)
 Frame = +2

Query: 17  SGARSYSTPVAF--PLASSRL-----FSTDASGAVAGSQDDSSSGEGHTYGRFYTNISGV 175
           SG RS S  + F   L+S        F T A G+  G +      +G T  +    I+G 
Sbjct: 16  SGLRSSSASLPFGKKLSSDEFVSIVSFQTSAMGSSGGYR------KGVTEAKLKVAINGF 69

Query: 176 GRLGKNMLKTDIIHYLDQCELSLDDVKIDYNKGFYPMGALLKFPS 310
           GR+G+N L+     +  + +  LD + I+   G      LLK+ S
Sbjct: 70  GRIGRNFLRC----WHGRKDSPLDIIAINDTGGVKQASHLLKYDS 110



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>PLCG1_HUMAN (P19174) 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase|
           gamma 1 (EC 3.1.4.11) (Phosphoinositide phospholipase C)
           (PLC-gamma-1) (Phospholipase C-gamma-1) (PLC-II)
           (PLC-148)
          Length = 1290

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 6/66 (9%)
 Frame = +2

Query: 41  PVAFPLASSRLFSTDASGAVAGSQDD------SSSGEGHTYGRFYTNISGVGRLGKNMLK 202
           P  F L SS+++ ++ + +  G++D+      SSS E H+  +++    G GR G+++ +
Sbjct: 507 PHYFVLTSSKIYYSEETSSDQGNEDEEEPKEVSSSTELHSNEKWFHGKLGAGRDGRHIAE 566

Query: 203 TDIIHY 220
             +  Y
Sbjct: 567 RLLTEY 572



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>YQC1_SCHPO (O74463) Hypothetical protein C1739.01 in chromosome III|
          Length = 547

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 19/68 (27%), Positives = 30/68 (44%)
 Frame = -1

Query: 483 PHKKRSMSSA*ALRGTPCNSTAFPFKDILCSHTSGLTLSSLYMRP*IVCLSAASNDSTEG 304
           P  K + ++A  +RG    S  FPF      H+   T++ +   P    LS+  N  +  
Sbjct: 143 PADKANNTTATDVRGNTATSPYFPFSRSPGRHSGNSTINGMMTTPNF--LSSGVNSRSVD 200

Query: 303 NFNNAPMG 280
            FNN+  G
Sbjct: 201 EFNNSSSG 208



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>XYNA_CLOSR (P33558) Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8) (Xylanase|
           A) (1,4-beta-D-xylan xylanohydrolase A)
          Length = 512

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +2

Query: 17  SGARSYSTPVAFPLASSRLFSTDA-SGAVAGSQDDSSSGEGHTYGRFYTNISGV 175
           SGA  +S  VA  + +S    +D+ +G + G+   SS+G  +TY    TNIS +
Sbjct: 296 SGATGFSATVATEVNTSIQIRSDSPTGTLLGTLYVSSTGSWNTYQTVSTNISKI 349



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>PLCG1_MOUSE (Q62077) 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase|
           gamma 1 (EC 3.1.4.11) (Phosphoinositide phospholipase C)
           (PLC-gamma-1) (Phospholipase C-gamma-1) (PLC-II)
           (PLC-148)
          Length = 1302

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 6/66 (9%)
 Frame = +2

Query: 41  PVAFPLASSRLFSTDASGAVAGSQDD------SSSGEGHTYGRFYTNISGVGRLGKNMLK 202
           P  F L SS+++ ++ + +  G++D+      SSS E H+  +++    G GR G+++ +
Sbjct: 507 PHYFVLTSSKIYYSEETSSDQGNEDEEEPKEASSSTELHSSEKWFHGKLGAGRDGRHIAE 566

Query: 203 TDIIHY 220
             +  Y
Sbjct: 567 RLLTEY 572


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,761,615
Number of Sequences: 219361
Number of extensions: 1873411
Number of successful extensions: 5356
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5331
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4700377760
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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