| Clone Name | bags39g08 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_493842.1| Oryza sativa (japonica cultivar-group), mRNA Length = 717 Score = 103 bits (52), Expect = 6e-19 Identities = 130/156 (83%) Strand = Plus / Plus Query: 188 aagaacatgctgaagactgacattatccattaccttgaccaatgtgaactgtcactggat 247 |||| |||||| || ||||| |||||||| ||||||| ||| ||||||||||||||| Sbjct: 250 aagagcatgctcaaaactgatattatccaccaccttgataaatctgaactgtcactggac 309 Query: 248 gatgtgaagattgattacaacaagggattttatcccatgggcgcattattgaagtttcct 307 ||||||||||||||||| |||| ||||| |||||| ||||||| || |||| |||| || Sbjct: 310 gatgtgaagattgattataacaggggatattatccagtgggcgcgttgttgaggttttct 369 Query: 308 tcagtggaatcatttgaggcagcactcaggcaaaca 343 |||||| || |||| | ||||| ||||||||||| Sbjct: 370 tcagtgccattatttaacacagcagtcaggcaaaca 405 Score = 79.8 bits (40), Expect = 9e-12 Identities = 121/148 (81%) Strand = Plus / Plus Query: 411 atggaaaagctgtactgttgcaaggagtccctcgaagcgctcaagctgatgacatagaac 470 ||||||||||| |||| ||||||||||||||||||| ||| | | || |||||||||| Sbjct: 473 atggaaaagctatactattgcaaggagtccctcgaaatgctgtaccagaggacatagaac 532 Query: 471 gtttcttgtgcggcactaactatgaacctcctccatttgaaaactttgtcagagctgggg 530 | ||| |||| ||||| || ||||||||| |||||||||| |||| ||||| |||| | Sbjct: 533 gattcctgtgtggcaccaatgttgaacctccgccatttgaaagctttctcagacctggtg 592 Query: 531 ttcctgagcctgtaagaatggtgctggt 558 | || || ||| | ||| |||||||||| Sbjct: 593 tcccagatcctatcagagtggtgctggt 620
>dbj|AK104514.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-B01, full insert sequence Length = 1090 Score = 103 bits (52), Expect = 6e-19 Identities = 130/156 (83%) Strand = Plus / Plus Query: 188 aagaacatgctgaagactgacattatccattaccttgaccaatgtgaactgtcactggat 247 |||| |||||| || ||||| |||||||| ||||||| ||| ||||||||||||||| Sbjct: 353 aagagcatgctcaaaactgatattatccaccaccttgataaatctgaactgtcactggac 412 Query: 248 gatgtgaagattgattacaacaagggattttatcccatgggcgcattattgaagtttcct 307 ||||||||||||||||| |||| ||||| |||||| ||||||| || |||| |||| || Sbjct: 413 gatgtgaagattgattataacaggggatattatccagtgggcgcgttgttgaggttttct 472 Query: 308 tcagtggaatcatttgaggcagcactcaggcaaaca 343 |||||| || |||| | ||||| ||||||||||| Sbjct: 473 tcagtgccattatttaacacagcagtcaggcaaaca 508 Score = 79.8 bits (40), Expect = 9e-12 Identities = 121/148 (81%) Strand = Plus / Plus Query: 411 atggaaaagctgtactgttgcaaggagtccctcgaagcgctcaagctgatgacatagaac 470 ||||||||||| |||| ||||||||||||||||||| ||| | | || |||||||||| Sbjct: 576 atggaaaagctatactattgcaaggagtccctcgaaatgctgtaccagaggacatagaac 635 Query: 471 gtttcttgtgcggcactaactatgaacctcctccatttgaaaactttgtcagagctgggg 530 | ||| |||| ||||| || ||||||||| |||||||||| |||| ||||| |||| | Sbjct: 636 gattcctgtgtggcaccaatgttgaacctccgccatttgaaagctttctcagacctggtg 695 Query: 531 ttcctgagcctgtaagaatggtgctggt 558 | || || ||| | ||| |||||||||| Sbjct: 696 tcccagatcctatcagagtggtgctggt 723
>dbj|AK102161.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033086G07, full insert sequence Length = 1124 Score = 103 bits (52), Expect = 6e-19 Identities = 130/156 (83%) Strand = Plus / Plus Query: 188 aagaacatgctgaagactgacattatccattaccttgaccaatgtgaactgtcactggat 247 |||| |||||| || ||||| |||||||| ||||||| ||| ||||||||||||||| Sbjct: 376 aagagcatgctcaaaactgatattatccaccaccttgataaatctgaactgtcactggac 435 Query: 248 gatgtgaagattgattacaacaagggattttatcccatgggcgcattattgaagtttcct 307 ||||||||||||||||| |||| ||||| |||||| ||||||| || |||| |||| || Sbjct: 436 gatgtgaagattgattataacaggggatattatccagtgggcgcgttgttgaggttttct 495 Query: 308 tcagtggaatcatttgaggcagcactcaggcaaaca 343 |||||| || |||| | ||||| ||||||||||| Sbjct: 496 tcagtgccattatttaacacagcagtcaggcaaaca 531 Score = 79.8 bits (40), Expect = 9e-12 Identities = 121/148 (81%) Strand = Plus / Plus Query: 411 atggaaaagctgtactgttgcaaggagtccctcgaagcgctcaagctgatgacatagaac 470 ||||||||||| |||| ||||||||||||||||||| ||| | | || |||||||||| Sbjct: 599 atggaaaagctatactattgcaaggagtccctcgaaatgctgtaccagaggacatagaac 658 Query: 471 gtttcttgtgcggcactaactatgaacctcctccatttgaaaactttgtcagagctgggg 530 | ||| |||| ||||| || ||||||||| |||||||||| |||| ||||| |||| | Sbjct: 659 gattcctgtgtggcaccaatgttgaacctccgccatttgaaagctttctcagacctggtg 718 Query: 531 ttcctgagcctgtaagaatggtgctggt 558 | || || ||| | ||| |||||||||| Sbjct: 719 tcccagatcctatcagagtggtgctggt 746
>dbj|AK061166.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-209-A08, full insert sequence Length = 1122 Score = 103 bits (52), Expect = 6e-19 Identities = 130/156 (83%) Strand = Plus / Plus Query: 188 aagaacatgctgaagactgacattatccattaccttgaccaatgtgaactgtcactggat 247 |||| |||||| || ||||| |||||||| ||||||| ||| ||||||||||||||| Sbjct: 375 aagagcatgctcaaaactgatattatccaccaccttgataaatctgaactgtcactggac 434 Query: 248 gatgtgaagattgattacaacaagggattttatcccatgggcgcattattgaagtttcct 307 ||||||||||||||||| |||| ||||| |||||| ||||||| || |||| |||| || Sbjct: 435 gatgtgaagattgattataacaggggatattatccagtgggcgcgttgttgaggttttct 494 Query: 308 tcagtggaatcatttgaggcagcactcaggcaaaca 343 |||||| || |||| | ||||| ||||||||||| Sbjct: 495 tcagtgccattatttaacacagcagtcaggcaaaca 530 Score = 79.8 bits (40), Expect = 9e-12 Identities = 121/148 (81%) Strand = Plus / Plus Query: 411 atggaaaagctgtactgttgcaaggagtccctcgaagcgctcaagctgatgacatagaac 470 ||||||||||| |||| ||||||||||||||||||| ||| | | || |||||||||| Sbjct: 598 atggaaaagctatactattgcaaggagtccctcgaaatgctgtaccagaggacatagaac 657 Query: 471 gtttcttgtgcggcactaactatgaacctcctccatttgaaaactttgtcagagctgggg 530 | ||| |||| ||||| || ||||||||| |||||||||| |||| ||||| |||| | Sbjct: 658 gattcctgtgtggcaccaatgttgaacctccgccatttgaaagctttctcagacctggtg 717 Query: 531 ttcctgagcctgtaagaatggtgctggt 558 | || || ||| | ||| |||||||||| Sbjct: 718 tcccagatcctatcagagtggtgctggt 745
>gb|AY109783.1| Zea mays CL19997_1 mRNA sequence Length = 1041 Score = 89.7 bits (45), Expect = 9e-15 Identities = 84/97 (86%) Strand = Plus / Minus Query: 179 cgtcttggcaagaacatgctgaagactgacattatccattaccttgaccaatgtgaactg 238 ||||||| |||||||| |||| ||||| ||||||||| |||||||| ||||| | || Sbjct: 761 cgtcttgagaagaacatattgaaaactgatattatccatcaccttgacagatgtggattg 702 Query: 239 tcactggatgatgtgaagattgattacaacaagggat 275 ||| ||||||||||||||||||| ||||||||||||| Sbjct: 701 tcattggatgatgtgaagattgaatacaacaagggat 665
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 87.7 bits (44), Expect = 4e-14 Identities = 89/104 (85%) Strand = Plus / Plus Query: 188 aagaacatgctgaagactgacattatccattaccttgaccaatgtgaactgtcactggat 247 |||| |||||| || ||||| |||||||| ||||||| ||| ||||||||||||||| Sbjct: 9676489 aagagcatgctcaaaactgatattatccaccaccttgataaatctgaactgtcactggac 9676548 Query: 248 gatgtgaagattgattacaacaagggattttatcccatgggcgc 291 ||||||||||||||||| |||| ||||| |||||| ||||||| Sbjct: 9676549 gatgtgaagattgattataacaggggatattatccagtgggcgc 9676592 Score = 56.0 bits (28), Expect = 1e-04 Identities = 82/100 (82%) Strand = Plus / Plus Query: 423 tactgttgcaaggagtccctcgaagcgctcaagctgatgacatagaacgtttcttgtgcg 482 |||| ||||||||||||||||||| ||| | | || ||||||||||| ||| |||| | Sbjct: 9678446 tactattgcaaggagtccctcgaaatgctgtaccagaggacatagaacgattcctgtgtg 9678505 Query: 483 gcactaactatgaacctcctccatttgaaaactttgtcag 522 |||| || ||||||||| |||||||||| |||| |||| Sbjct: 9678506 gcaccaatgttgaacctccgccatttgaaagctttctcag 9678545
>gb|AC084405.6| Oryza sativa chromosome 3 BAC OSJNBa0044H10 genomic sequence, complete sequence Length = 165113 Score = 87.7 bits (44), Expect = 4e-14 Identities = 89/104 (85%) Strand = Plus / Plus Query: 188 aagaacatgctgaagactgacattatccattaccttgaccaatgtgaactgtcactggat 247 |||| |||||| || ||||| |||||||| ||||||| ||| ||||||||||||||| Sbjct: 97388 aagagcatgctcaaaactgatattatccaccaccttgataaatctgaactgtcactggac 97447 Query: 248 gatgtgaagattgattacaacaagggattttatcccatgggcgc 291 ||||||||||||||||| |||| ||||| |||||| ||||||| Sbjct: 97448 gatgtgaagattgattataacaggggatattatccagtgggcgc 97491 Score = 56.0 bits (28), Expect = 1e-04 Identities = 82/100 (82%) Strand = Plus / Plus Query: 423 tactgttgcaaggagtccctcgaagcgctcaagctgatgacatagaacgtttcttgtgcg 482 |||| ||||||||||||||||||| ||| | | || ||||||||||| ||| |||| | Sbjct: 99345 tactattgcaaggagtccctcgaaatgctgtaccagaggacatagaacgattcctgtgtg 99404 Query: 483 gcactaactatgaacctcctccatttgaaaactttgtcag 522 |||| || ||||||||| |||||||||| |||| |||| Sbjct: 99405 gcaccaatgttgaacctccgccatttgaaagctttctcag 99444
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 87.7 bits (44), Expect = 4e-14 Identities = 89/104 (85%) Strand = Plus / Plus Query: 188 aagaacatgctgaagactgacattatccattaccttgaccaatgtgaactgtcactggat 247 |||| |||||| || ||||| |||||||| ||||||| ||| ||||||||||||||| Sbjct: 9674610 aagagcatgctcaaaactgatattatccaccaccttgataaatctgaactgtcactggac 9674669 Query: 248 gatgtgaagattgattacaacaagggattttatcccatgggcgc 291 ||||||||||||||||| |||| ||||| |||||| ||||||| Sbjct: 9674670 gatgtgaagattgattataacaggggatattatccagtgggcgc 9674713 Score = 56.0 bits (28), Expect = 1e-04 Identities = 82/100 (82%) Strand = Plus / Plus Query: 423 tactgttgcaaggagtccctcgaagcgctcaagctgatgacatagaacgtttcttgtgcg 482 |||| ||||||||||||||||||| ||| | | || ||||||||||| ||| |||| | Sbjct: 9676567 tactattgcaaggagtccctcgaaatgctgtaccagaggacatagaacgattcctgtgtg 9676626 Query: 483 gcactaactatgaacctcctccatttgaaaactttgtcag 522 |||| || ||||||||| |||||||||| |||| |||| Sbjct: 9676627 gcaccaatgttgaacctccgccatttgaaagctttctcag 9676666
>gb|AC111050.9| Mus musculus chromosome 3, clone RP24-66H10, complete sequence Length = 230651 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 138 atacctatggaaggttttaca 158 ||||||||||||||||||||| Sbjct: 200593 atacctatggaaggttttaca 200613
>gb|AC122735.18| Mus musculus chromosome 3, clone RP23-215I1, complete sequence Length = 182999 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 138 atacctatggaaggttttaca 158 ||||||||||||||||||||| Sbjct: 1837 atacctatggaaggttttaca 1857
>gb|AC016991.5|AC016991 Homo sapiens BAC clone RP11-17E15 from Y, complete sequence Length = 174402 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 324 aggcagcactcaggcaaacaattca 348 |||||||||||||||||| |||||| Sbjct: 7563 aggcagcactcaggcaaagaattca 7539
>gb|AC167699.2| Reniera sp. JGI-2005 clone JGIBAYC-5H5, complete sequence Length = 35081 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 498 ctcctccatttgaaaacttt 517 |||||||||||||||||||| Sbjct: 8750 ctcctccatttgaaaacttt 8731
>emb|CR376747.28| Zebrafish DNA sequence from clone CH211-248D20 in linkage group 8, complete sequence Length = 153394 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 149 aggttttacactaatatttc 168 |||||||||||||||||||| Sbjct: 114030 aggttttacactaatatttc 114049
>ref|XM_663576.1| Cryptosporidium hominis TU502 transmembrane phosphatase with tensin y isoform C (Chro.30223) partial mRNA Length = 2244 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 400 gatatctttgaatggaaaagctgt 423 ||||||||||||||||||| |||| Sbjct: 1339 gatatctttgaatggaaaatctgt 1362
>emb|AL354674.5| Human DNA sequence from clone RP11-629E24 on chromosome 13 Contains a novel gene and a CpG island, complete sequence Length = 137347 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 318 catttgaggcagcactcaggcaaa 341 ||||||||| |||||||||||||| Sbjct: 30161 catttgaggaagcactcaggcaaa 30138
>emb|AL121674.12|HSDJ540H1 Human DNA sequence from clone RP4-540H1 on chromosome 20 Contains part of the CHD6 gene for chromodomain helicase DNA binding protein 6, complete sequence Length = 39079 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 191 aacatgctgaagactgacattatc 214 |||||||| ||||||||||||||| Sbjct: 1781 aacatgctaaagactgacattatc 1758
>emb|BX321904.19| Zebrafish DNA sequence from clone DKEY-279K15 in linkage group 1, complete sequence Length = 153891 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 302 tttccttcagtggaatcatttgag 325 |||||||||| ||||||||||||| Sbjct: 22039 tttccttcaggggaatcatttgag 22062
>emb|BX284700.13| Zebrafish DNA sequence from clone CH211-269O12 in linkage group 13, complete sequence Length = 183756 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 504 catttgaaaactttgtcaga 523 |||||||||||||||||||| Sbjct: 174479 catttgaaaactttgtcaga 174460
>gb|AE011865.1| Xanthomonas axonopodis pv. citri str. 306, section 243 of 469 of the complete genome Length = 10029 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 cggggcgcgctcttactcga 38 |||||||||||||||||||| Sbjct: 5554 cggggcgcgctcttactcga 5573
>gb|AC159029.1| Pan troglodytes BAC clone CH251-407C14 from chromosome unknown, complete sequence Length = 175795 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 318 catttgaggcagcactcaggcaaa 341 ||||||||| |||||||||||||| Sbjct: 45290 catttgaggaagcactcaggcaaa 45267
>emb|BX855614.13| Zebrafish DNA sequence from clone DKEY-262G12 in linkage group 4, complete sequence Length = 157594 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 tgtcactggatgatgtgaag 256 |||||||||||||||||||| Sbjct: 20475 tgtcactggatgatgtgaag 20494
>gb|AC158169.2| Mus musculus BAC clone RP23-210A16 from chromosome 5, complete sequence Length = 223006 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 cagcactcaggcaaacaatt 346 |||||||||||||||||||| Sbjct: 71176 cagcactcaggcaaacaatt 71195 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,514,891 Number of Sequences: 3902068 Number of extensions: 4514891 Number of successful extensions: 80908 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 80782 Number of HSP's gapped (non-prelim): 119 length of query: 567 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 544 effective length of database: 17,143,297,704 effective search space: 9325953950976 effective search space used: 9325953950976 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)