| Clone Name | bags39e19 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_479163.1| Oryza sativa (japonica cultivar-group), mRNA Length = 351 Score = 246 bits (124), Expect = 7e-62 Identities = 289/344 (84%) Strand = Plus / Plus Query: 52 gccatgagcgccctcaagttctgcagcaaatgcgacaacatgctgtacccgcaggaggac 111 |||||||||||||||||||||||| || ||||| ||||||||| ||||||| ||||||| Sbjct: 4 gccatgagcgccctcaagttctgcggcgaatgcagcaacatgctctacccgcgggaggac 63 Query: 112 aaggtgatgcacgtcctcctctacgcctgctcgaattgccagcaccaggagattgctgct 171 |||| || |||| ||| |||||||||||| ||| ||||||||||| ||| || Sbjct: 64 aaggagacgcacaccctgctctacgcctgcaattcctgcgagcaccaggagcctgccact 123 Query: 172 gatacttgtgtgtacaaaagggttcttcgtaaatctgctgatgaacctaaggacacccta 231 || ||||||||||||||||||||||| |||||| |||||| ||||| || || | |||| Sbjct: 124 gacacttgtgtgtacaaaagggttctccgtaaacctgctggggaacccaaagatatccta 183 Query: 232 aaagatgcagctgctgatccttctctgccacgcaccaaaagtgttaaatgctacaactgt 291 ||||||||||| ||||||| | ||||| ||||||| |||| ||||||| ||||||||| Sbjct: 184 aaagatgcagcaactgatcccaccctgcctcgcaccagaagtattaaatgttacaactgt 243 Query: 292 ggttatccagaagctgcttatttccaggctccgacgaagggagagcgtggcctgacgctg 351 || ||||||| ||||||| ||| |||||||| || ||||| ||| |||||||| ||| Sbjct: 244 ggccatccagaggctgctttttttcaggctccaactaagggggagaaaggcctgacactg 303 Query: 352 tacttcatctgctgcagccctacctgtggtcacaggtggaggga 395 |||||||||||||||| ||| | ||||||||||||||||||||| Sbjct: 304 tacttcatctgctgcaacccaagctgtggtcacaggtggaggga 347
>gb|AY105628.1| Zea mays PCO108049 mRNA sequence Length = 805 Score = 123 bits (62), Expect = 7e-25 Identities = 251/314 (79%) Strand = Plus / Plus Query: 86 acaacatgctgtacccgcaggaggacaaggtgatgcacgtcctcctctacgcctgctcga 145 |||||||||||||||||| ||||||||||| || || | |||||| ||||| ||| | Sbjct: 105 acaacatgctgtacccgcgggaggacaaggagacgcgcaccctcctgtacgcgtgccaaa 164 Query: 146 attgccagcaccaggagattgctgctgatacttgtgtgtacaaaagggttcttcgtaaat 205 ||| |||| |||||||||| |||||||||||||||||||||||||| | || || Sbjct: 165 cgtgcgagcatgaggagattgccactgatacttgtgtgtacaaaagggttatccgcaagc 224 Query: 206 ctgctgatgaacctaaggacaccctaaaagatgcagctgctgatccttctctgccacgca 265 ||| || ||| || ||||| ||| || |||||||| |||||||| ||||| |||| Sbjct: 225 ctggtggtgagcccaaggatgtcctgaaggatgcagcaactgatcctagcctgcctcgca 284 Query: 266 ccaaaagtgttaaatgctacaactgtggttatccagaagctgcttatttccaggctccga 325 ||| ||| || | ||| |||||||| ||||||||||||| | ||| ||||| |||| Sbjct: 285 ccagaagcgtcagatgttacaactgcaaccatccagaagctgccttttttcaggccccga 344 Query: 326 cgaagggagagcgtggcctgacgctgtacttcatctgctgcagccctacctgtggtcaca 385 | |||||||| | | | |||||||||||||||||||||||| ||| | ||| || |||| Sbjct: 345 ctaagggagaacaagccatgacgctgtacttcatctgctgcaacccaagctgcgggcaca 404 Query: 386 ggtggagggactga 399 |||||||||||||| Sbjct: 405 ggtggagggactga 418
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 115 bits (58), Expect = 2e-22 Identities = 127/150 (84%) Strand = Plus / Minus Query: 170 ctgatacttgtgtgtacaaaagggttcttcgtaaatctgctgatgaacctaaggacaccc 229 |||| ||||||||||||||||||||||| |||||| |||||| ||||| || || | || Sbjct: 25316452 ctgacacttgtgtgtacaaaagggttctccgtaaacctgctggggaacccaaagatatcc 25316393 Query: 230 taaaagatgcagctgctgatccttctctgccacgcaccaaaagtgttaaatgctacaact 289 ||||||||||||| ||||||| | ||||| ||||||| |||| ||||||| ||||||| Sbjct: 25316392 taaaagatgcagcaactgatcccaccctgcctcgcaccagaagtattaaatgttacaact 25316333 Query: 290 gtggttatccagaagctgcttatttccagg 319 |||| ||||||| ||||||| ||| |||| Sbjct: 25316332 gtggccatccagaggctgctttttttcagg 25316303 Score = 81.8 bits (41), Expect = 3e-12 Identities = 56/61 (91%) Strand = Plus / Minus Query: 340 ggcctgacgctgtacttcatctgctgcagccctacctgtggtcacaggtggagggactga 399 |||||||| ||||||||||||||||||| ||| | ||||||||||||||||||||| ||| Sbjct: 25315941 ggcctgacactgtacttcatctgctgcaacccaagctgtggtcacaggtggagggattga 25315882 Query: 400 c 400 | Sbjct: 25315881 c 25315881 Score = 54.0 bits (27), Expect = 6e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 87 caacatgctgtacccgcaggaggacaaggtgatgcacgtcctcctctacgcctgc 141 ||||||||| ||||||| ||||||||||| || |||| ||| |||||||||||| Sbjct: 25318092 caacatgctctacccgcgggaggacaaggagacgcacaccctgctctacgcctgc 25318038 Score = 48.1 bits (24), Expect = 0.035 Identities = 24/24 (100%) Strand = Plus / Minus Query: 52 gccatgagcgccctcaagttctgc 75 |||||||||||||||||||||||| Sbjct: 25318224 gccatgagcgccctcaagttctgc 25318201
>dbj|AP005198.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0616D06 Length = 153800 Score = 115 bits (58), Expect = 2e-22 Identities = 127/150 (84%) Strand = Plus / Minus Query: 170 ctgatacttgtgtgtacaaaagggttcttcgtaaatctgctgatgaacctaaggacaccc 229 |||| ||||||||||||||||||||||| |||||| |||||| ||||| || || | || Sbjct: 133123 ctgacacttgtgtgtacaaaagggttctccgtaaacctgctggggaacccaaagatatcc 133064 Query: 230 taaaagatgcagctgctgatccttctctgccacgcaccaaaagtgttaaatgctacaact 289 ||||||||||||| ||||||| | ||||| ||||||| |||| ||||||| ||||||| Sbjct: 133063 taaaagatgcagcaactgatcccaccctgcctcgcaccagaagtattaaatgttacaact 133004 Query: 290 gtggttatccagaagctgcttatttccagg 319 |||| ||||||| ||||||| ||| |||| Sbjct: 133003 gtggccatccagaggctgctttttttcagg 132974 Score = 81.8 bits (41), Expect = 3e-12 Identities = 56/61 (91%) Strand = Plus / Minus Query: 340 ggcctgacgctgtacttcatctgctgcagccctacctgtggtcacaggtggagggactga 399 |||||||| ||||||||||||||||||| ||| | ||||||||||||||||||||| ||| Sbjct: 132612 ggcctgacactgtacttcatctgctgcaacccaagctgtggtcacaggtggagggattga 132553 Query: 400 c 400 | Sbjct: 132552 c 132552 Score = 54.0 bits (27), Expect = 6e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 87 caacatgctgtacccgcaggaggacaaggtgatgcacgtcctcctctacgcctgc 141 ||||||||| ||||||| ||||||||||| || |||| ||| |||||||||||| Sbjct: 134763 caacatgctctacccgcgggaggacaaggagacgcacaccctgctctacgcctgc 134709 Score = 48.1 bits (24), Expect = 0.035 Identities = 24/24 (100%) Strand = Plus / Minus Query: 52 gccatgagcgccctcaagttctgc 75 |||||||||||||||||||||||| Sbjct: 134895 gccatgagcgccctcaagttctgc 134872
>dbj|AP004988.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:B1056G08 Length = 168173 Score = 115 bits (58), Expect = 2e-22 Identities = 127/150 (84%) Strand = Plus / Minus Query: 170 ctgatacttgtgtgtacaaaagggttcttcgtaaatctgctgatgaacctaaggacaccc 229 |||| ||||||||||||||||||||||| |||||| |||||| ||||| || || | || Sbjct: 9542 ctgacacttgtgtgtacaaaagggttctccgtaaacctgctggggaacccaaagatatcc 9483 Query: 230 taaaagatgcagctgctgatccttctctgccacgcaccaaaagtgttaaatgctacaact 289 ||||||||||||| ||||||| | ||||| ||||||| |||| ||||||| ||||||| Sbjct: 9482 taaaagatgcagcaactgatcccaccctgcctcgcaccagaagtattaaatgttacaact 9423 Query: 290 gtggttatccagaagctgcttatttccagg 319 |||| ||||||| ||||||| ||| |||| Sbjct: 9422 gtggccatccagaggctgctttttttcagg 9393 Score = 81.8 bits (41), Expect = 3e-12 Identities = 56/61 (91%) Strand = Plus / Minus Query: 340 ggcctgacgctgtacttcatctgctgcagccctacctgtggtcacaggtggagggactga 399 |||||||| ||||||||||||||||||| ||| | ||||||||||||||||||||| ||| Sbjct: 9031 ggcctgacactgtacttcatctgctgcaacccaagctgtggtcacaggtggagggattga 8972 Query: 400 c 400 | Sbjct: 8971 c 8971 Score = 54.0 bits (27), Expect = 6e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 87 caacatgctgtacccgcaggaggacaaggtgatgcacgtcctcctctacgcctgc 141 ||||||||| ||||||| ||||||||||| || |||| ||| |||||||||||| Sbjct: 11182 caacatgctctacccgcgggaggacaaggagacgcacaccctgctctacgcctgc 11128 Score = 48.1 bits (24), Expect = 0.035 Identities = 24/24 (100%) Strand = Plus / Minus Query: 52 gccatgagcgccctcaagttctgc 75 |||||||||||||||||||||||| Sbjct: 11314 gccatgagcgccctcaagttctgc 11291
>ref|XM_317057.2| Anopheles gambiae str. PEST ENSANGP00000019703 (ENSANGG00000017214), partial mRNA Length = 387 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Plus Query: 80 aatgcgacaacatgctgtacccgcaggaggacaagg 115 ||||| ||||||||||||||||| |||||||||||| Sbjct: 65 aatgcaacaacatgctgtacccgaaggaggacaagg 100
>gb|DQ213144.1| Taeniopygia guttata clone 0058P0035C09 polymerase (RNA) II (DNA directed) polypeptide I 14-like mRNA, complete sequence Length = 901 Score = 44.1 bits (22), Expect = 0.55 Identities = 28/30 (93%) Strand = Plus / Plus Query: 86 acaacatgctgtacccgcaggaggacaagg 115 |||||||||||||||| |||||||||||| Sbjct: 72 acaacatgctgtaccccaaggaggacaagg 101
>gb|AC016792.5| Drosophila melanogaster clone BACR26A02, complete sequence Length = 164971 Score = 44.1 bits (22), Expect = 0.55 Identities = 28/30 (93%) Strand = Plus / Minus Query: 86 acaacatgctgtacccgcaggaggacaagg 115 |||||||||||||||| |||||||||||| Sbjct: 129953 acaacatgctgtaccccaaggaggacaagg 129924
>ref|XM_423952.1| PREDICTED: Gallus gallus similar to DNA-directed RNA polymerase II 14.5 kDa polypeptide (RPB9) (RPB14.5) (LOC426289), mRNA Length = 1276 Score = 44.1 bits (22), Expect = 0.55 Identities = 28/30 (93%) Strand = Plus / Plus Query: 86 acaacatgctgtacccgcaggaggacaagg 115 |||||||||||||||| |||||||||||| Sbjct: 296 acaacatgctgtaccccaaggaggacaagg 325
>ref|XM_426753.1| PREDICTED: Gallus gallus similar to olfactory receptor Olr1365; similar to OLFACTORY RECEPTOR-LIKE PROTEIN F5 (LOC429197), partial mRNA Length = 1555 Score = 44.1 bits (22), Expect = 0.55 Identities = 28/30 (93%) Strand = Plus / Plus Query: 86 acaacatgctgtacccgcaggaggacaagg 115 |||||||||||||||| |||||||||||| Sbjct: 755 acaacatgctgtaccccaaggaggacaagg 784
>emb|AL445071.15| Human DNA sequence from clone RP11-460H18 on chromosome 10 Contains a peptidylprolyl isomerase A (cyclophilin A) (PPIA)(CYPA, CYPH) pseudogene, a ribosomal protein S24 (RPS24) pseudogene, the 5' end of a novel gene and a CpG island, complete sequence Length = 151478 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 374 cctgtggtcacaggtggaggga 395 |||||||||||||||||||||| Sbjct: 47210 cctgtggtcacaggtggaggga 47231
>emb|Y00228.1|DMSUHW Drosophila melanogaster su(Hw) gene for suppressor of hairy wing Length = 5803 Score = 44.1 bits (22), Expect = 0.55 Identities = 28/30 (93%) Strand = Plus / Minus Query: 86 acaacatgctgtacccgcaggaggacaagg 115 |||||||||||||||| |||||||||||| Sbjct: 386 acaacatgctgtaccccaaggaggacaagg 357
>ref|NM_169575.1| Drosophila melanogaster RNA polymerase II 15kD subunit CG3284-RA (RpII15), mRNA Length = 696 Score = 44.1 bits (22), Expect = 0.55 Identities = 28/30 (93%) Strand = Plus / Plus Query: 86 acaacatgctgtacccgcaggaggacaagg 115 |||||||||||||||| |||||||||||| Sbjct: 112 acaacatgctgtaccccaaggaggacaagg 141
>gb|S88139.1| RpII15=Saccharomyces cerevisiae RPB9 homolog {putative zinc fingers} [Drosophila melanogaster, Genomic, 752 nt] Length = 752 Score = 44.1 bits (22), Expect = 0.55 Identities = 28/30 (93%) Strand = Plus / Plus Query: 86 acaacatgctgtacccgcaggaggacaagg 115 |||||||||||||||| |||||||||||| Sbjct: 167 acaacatgctgtaccccaaggaggacaagg 196
>emb|BX934278.2| Gallus gallus finished cDNA, clone ChEST49c1 Length = 449 Score = 44.1 bits (22), Expect = 0.55 Identities = 28/30 (93%) Strand = Plus / Plus Query: 86 acaacatgctgtacccgcaggaggacaagg 115 |||||||||||||||| |||||||||||| Sbjct: 129 acaacatgctgtaccccaaggaggacaagg 158
>emb|BX933030.2| Gallus gallus finished cDNA, clone ChEST1003n5 Length = 1041 Score = 44.1 bits (22), Expect = 0.55 Identities = 28/30 (93%) Strand = Plus / Plus Query: 86 acaacatgctgtacccgcaggaggacaagg 115 |||||||||||||||| |||||||||||| Sbjct: 61 acaacatgctgtaccccaaggaggacaagg 90
>gb|AC007904.6|AC007904 Drosophila melanogaster, chromosome 3R, region 88B-88B, BAC clone BACR01H04, complete sequence Length = 190325 Score = 44.1 bits (22), Expect = 0.55 Identities = 28/30 (93%) Strand = Plus / Plus Query: 86 acaacatgctgtacccgcaggaggacaagg 115 |||||||||||||||| |||||||||||| Sbjct: 189434 acaacatgctgtaccccaaggaggacaagg 189463
>emb|BX933808.1| Gallus gallus finished cDNA, clone ChEST997d4 Length = 1343 Score = 44.1 bits (22), Expect = 0.55 Identities = 28/30 (93%) Strand = Plus / Plus Query: 86 acaacatgctgtacccgcaggaggacaagg 115 |||||||||||||||| |||||||||||| Sbjct: 168 acaacatgctgtaccccaaggaggacaagg 197
>gb|S66940.1|S66940 Drosophila melanogaster RNA polymerase II subunit 9 (RPII15) gene, complete cds Length = 396 Score = 44.1 bits (22), Expect = 0.55 Identities = 28/30 (93%) Strand = Plus / Plus Query: 86 acaacatgctgtacccgcaggaggacaagg 115 |||||||||||||||| |||||||||||| Sbjct: 74 acaacatgctgtaccccaaggaggacaagg 103
>dbj|AK120183.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013034D10, full insert sequence Length = 672 Score = 44.1 bits (22), Expect = 0.55 Identities = 58/70 (82%) Strand = Plus / Plus Query: 46 gccgccgccatgagcgccctcaagttctgcagcaaatgcgacaacatgctgtacccgcag 105 ||||||||||||||| || | ||||| ||| || | ||| ||||||| |||||||| || Sbjct: 62 gccgccgccatgagcaccatgaagttttgccgcgagtgcaacaacatcctgtaccctaag 121 Query: 106 gaggacaagg 115 ||||| |||| Sbjct: 122 gaggagaagg 131
>gb|AE003704.3| Drosophila melanogaster chromosome 3R, section 42 of 118 of the complete sequence Length = 220679 Score = 44.1 bits (22), Expect = 0.55 Identities = 28/30 (93%) Strand = Plus / Plus Query: 86 acaacatgctgtacccgcaggaggacaagg 115 |||||||||||||||| |||||||||||| Sbjct: 49167 acaacatgctgtaccccaaggaggacaagg 49196
>gb|CP000153.1| Thiomicrospira denitrificans ATCC 33889, complete genome Length = 2201561 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 261 acgcaccaaaagtgttaaatgctacaact 289 ||||||||||||||||||| ||| ||||| Sbjct: 2029760 acgcaccaaaagtgttaaaagcttcaact 2029788
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 350 tgtacttcatctgctgcagcc 370 ||||||||||||||||||||| Sbjct: 3235418 tgtacttcatctgctgcagcc 3235438
>gb|AC100400.10| Mus musculus chromosome 15, clone RP23-134E16, complete sequence Length = 211743 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 567 ttctgagcttgttctcttcaatctt 591 ||||||| ||||||||||||||||| Sbjct: 116924 ttctgagattgttctcttcaatctt 116948
>gb|AC007819.8|AC007819 Drosophila melanogaster, chromosome 3R, region 98C-98C, BAC clone BACR06K21, complete sequence Length = 189649 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 394 gactgactggctggctgacaa 414 ||||||||||||||||||||| Sbjct: 122768 gactgactggctggctgacaa 122788
>gb|AC007005.3| Homo sapiens BAC clone RP11-532N23 from 2, complete sequence Length = 167776 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 385 aggtggagggactgactggct 405 ||||||||||||||||||||| Sbjct: 79737 aggtggagggactgactggct 79757
>gb|AE003764.3| Drosophila melanogaster chromosome 3R, section 102 of 118 of the complete sequence Length = 231455 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 394 gactgactggctggctgacaa 414 ||||||||||||||||||||| Sbjct: 108245 gactgactggctggctgacaa 108265
>dbj|AB047828.1| Citrus sinensis x Citrus reticulata DNA, family Rutaceae-specific repeat sequence, clone:JB-7 Length = 367 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 273 tgttaaatgctacaactgtgg 293 ||||||||||||||||||||| Sbjct: 146 tgttaaatgctacaactgtgg 166
>gb|AC141638.3| Mus musculus BAC clone RP23-415K1 from chromosome 7, complete sequence Length = 190553 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 298 ccagaagctgcttatttcca 317 |||||||||||||||||||| Sbjct: 887 ccagaagctgcttatttcca 868
>ref|XM_001000412.1| PREDICTED: Mus musculus polymerase (RNA) II (DNA directed) polypeptide I, transcript variant 2 (Polr2i), mRNA Length = 512 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 88 aacatgctgtacccgcaggaggacaagg 115 |||||||||||||| |||||||||||| Sbjct: 155 aacatgctgtaccccaaggaggacaagg 182
>ref|XM_001000426.1| PREDICTED: Mus musculus polymerase (RNA) II (DNA directed) polypeptide I, transcript variant 3 (Polr2i), mRNA Length = 1162 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 88 aacatgctgtacccgcaggaggacaagg 115 |||||||||||||| |||||||||||| Sbjct: 805 aacatgctgtaccccaaggaggacaagg 832
>ref|XM_899531.2| PREDICTED: Mus musculus polymerase (RNA) II (DNA directed) polypeptide I, transcript variant 5 (Polr2i), mRNA Length = 512 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 88 aacatgctgtacccgcaggaggacaagg 115 |||||||||||||| |||||||||||| Sbjct: 155 aacatgctgtaccccaaggaggacaagg 182
>ref|XM_133304.7| PREDICTED: Mus musculus polymerase (RNA) II (DNA directed) polypeptide I, transcript variant 1 (Polr2i), mRNA Length = 1162 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 88 aacatgctgtacccgcaggaggacaagg 115 |||||||||||||| |||||||||||| Sbjct: 805 aacatgctgtaccccaaggaggacaagg 832
>ref|XM_923618.2| PREDICTED: Mus musculus polymerase (RNA) II (DNA directed) polypeptide I, transcript variant 8 (Polr2i), mRNA Length = 512 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 88 aacatgctgtacccgcaggaggacaagg 115 |||||||||||||| |||||||||||| Sbjct: 155 aacatgctgtaccccaaggaggacaagg 182
>ref|XM_915179.2| PREDICTED: Mus musculus polymerase (RNA) II (DNA directed) polypeptide I, transcript variant 6 (Polr2i), mRNA Length = 1149 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 88 aacatgctgtacccgcaggaggacaagg 115 |||||||||||||| |||||||||||| Sbjct: 792 aacatgctgtaccccaaggaggacaagg 819
>emb|BX323045.14| Zebrafish DNA sequence from clone CH211-248I1 in linkage group 11, complete sequence Length = 104629 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 394 gactgactggctggctgaca 413 |||||||||||||||||||| Sbjct: 46603 gactgactggctggctgaca 46622
>gb|AC123833.3| Mus musculus BAC clone RP24-127A22 from chromosome 13, complete sequence Length = 146493 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 515 tggtatctgtgttccaaagt 534 |||||||||||||||||||| Sbjct: 88044 tggtatctgtgttccaaagt 88025
>emb|CR293520.5| Zebrafish DNA sequence from clone CH211-150J10 in linkage group 7, complete sequence Length = 168537 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 394 gactgactggctggctgaca 413 |||||||||||||||||||| Sbjct: 101801 gactgactggctggctgaca 101782
>emb|BX537348.8| Zebrafish DNA sequence from clone CH211-218O21 in linkage group 8, complete sequence Length = 207282 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 394 gactgactggctggctgaca 413 |||||||||||||||||||| Sbjct: 8573 gactgactggctggctgaca 8592
>emb|CR684072.2|CNS0FQS4 Tetraodon nigroviridis full-length cDNA Length = 600 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 88 aacatgctgtacccgcaggaggacaagg 115 |||||| |||||||| |||||||||||| Sbjct: 152 aacatgttgtacccgaaggaggacaagg 179
>gb|AC149067.3| Mus musculus BAC clone RP23-56C20 from chromosome 7, complete sequence Length = 267610 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 88 aacatgctgtacccgcaggaggacaagg 115 |||||||||||||| |||||||||||| Sbjct: 41185 aacatgctgtaccccaaggaggacaagg 41212
>gb|DQ475526.1| Porcine respiratory and reproductive syndrome virus isolate PRRSV0000973 envelope glycoprotein gene, complete cds Length = 603 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 395 actgactggctggctgacaa 414 |||||||||||||||||||| Sbjct: 157 actgactggctggctgacaa 176
>emb|CR381637.5| Zebrafish DNA sequence from clone DKEY-225P19 in linkage group 21, complete sequence Length = 171229 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 488 ttgtgtttgccttaacatgt 507 |||||||||||||||||||| Sbjct: 67814 ttgtgtttgccttaacatgt 67795
>gb|AC155933.3| Mus musculus BAC clone RP23-89K6 from chromosome 7, complete sequence Length = 265770 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 ccagaagctgcttatttcca 317 |||||||||||||||||||| Sbjct: 66318 ccagaagctgcttatttcca 66337
>emb|CR788281.7| Zebrafish DNA sequence from clone DKEY-175G20 in linkage group 2, complete sequence Length = 138235 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 394 gactgactggctggctgaca 413 |||||||||||||||||||| Sbjct: 62678 gactgactggctggctgaca 62697
>emb|BX530023.5| Zebrafish DNA sequence from clone DKEYP-50D11 in linkage group 21, complete sequence Length = 75972 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 488 ttgtgtttgccttaacatgt 507 |||||||||||||||||||| Sbjct: 5493 ttgtgtttgccttaacatgt 5474
>gb|DQ275647.1| HIV-1 isolate 02ZAPS008MB1 from South Africa truncated gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), truncated envelope glycoprotein (env), and nef protein (nef) genes, complete cds Length = 9011 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 270 aagtgttaaatgctacaactgtgg 293 |||||||||||||| ||||||||| Sbjct: 1363 aagtgttaaatgcttcaactgtgg 1386
>gb|AE017340.1| Idiomarina loihiensis L2TR, complete genome Length = 2839318 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 64 ctcaagttctgcagcaaatgcgacaaca 91 |||||||| |||||||||||| |||||| Sbjct: 173321 ctcaagttgtgcagcaaatgcaacaaca 173294
>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome Length = 6260361 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 tcgtaaatctgctgatgaac 217 |||||||||||||||||||| Sbjct: 1622464 tcgtaaatctgctgatgaac 1622445
>gb|AC154839.3| Mus musculus BAC clone RP23-61L24 from chromosome 13, complete sequence Length = 209819 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 515 tggtatctgtgttccaaagt 534 |||||||||||||||||||| Sbjct: 11895 tggtatctgtgttccaaagt 11876
>dbj|AK012635.1| Mus musculus 10, 11 days embryo whole body cDNA, RIKEN full-length enriched library, clone:2810002B19 product:DNA-DIRECTED RNA POLYMERASE II 14.5 KDA POLYPEPTIDE (EC 2.7.7.6) (RPB9) (RPB14.5) homolog [Homo sapiens], full insert sequence Length = 426 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 88 aacatgctgtacccgcaggaggacaagg 115 |||||||||||||| |||||||||||| Sbjct: 73 aacatgctgtaccccaaggaggacaagg 100
>emb|BX279524.5| Zebrafish DNA sequence from clone DKEY-35H11 in linkage group 11, complete sequence Length = 157440 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 394 gactgactggctggctgaca 413 |||||||||||||||||||| Sbjct: 154134 gactgactggctggctgaca 154153
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 84 cgacaacatgctgtacccgcaggaggac 111 |||||||||||||||| |||||| |||| Sbjct: 19641153 cgacaacatgctgtacgcgcaggtggac 19641180
>gb|AC127460.2| Homo sapiens chromosome 5 clone RP11-689B23, complete sequence Length = 115293 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 275 ttaaatgctacaactgtggt 294 |||||||||||||||||||| Sbjct: 80411 ttaaatgctacaactgtggt 80430
>dbj|AB221537.1| Mus musculus cDNA pooled tissues:(tissue_type=brain,dev_stage=8-12 days neonate,strain=BALB/c),(tissue_type=testis, dev_stage=adult, strain=C57BL/6J), clone:V01X001K03 Length = 378 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 88 aacatgctgtacccgcaggaggacaagg 115 |||||||||||||| |||||||||||| Sbjct: 64 aacatgctgtaccccaaggaggacaagg 91
>gb|AC113390.3| Homo sapiens chromosome 5 clone RP11-360C3, complete sequence Length = 196545 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 275 ttaaatgctacaactgtggt 294 |||||||||||||||||||| Sbjct: 159465 ttaaatgctacaactgtggt 159446
>ref|XM_214895.3| PREDICTED: Rattus norvegicus polymerase (RNA) II (DNA directed) polypeptide I (predicted) (Polr2i_predicted), mRNA Length = 661 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 88 aacatgctgtacccgcaggaggacaagg 115 |||||||||||||| |||||||||||| Sbjct: 306 aacatgctgtaccccaaggaggacaagg 333
>dbj|AP005110.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0605D08 Length = 144340 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 84 cgacaacatgctgtacccgcaggaggac 111 |||||||||||||||| |||||| |||| Sbjct: 107439 cgacaacatgctgtacgcgcaggtggac 107466
>dbj|AP002460.1| Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone:F1D9 Length = 111554 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 270 aagtgttaaatgctacaactgtgg 293 |||||| ||||||||||||||||| Sbjct: 77326 aagtgtcaaatgctacaactgtgg 77349
>dbj|AK073663.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046A21, full insert sequence Length = 1582 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 84 cgacaacatgctgtacccgcaggaggac 111 |||||||||||||||| |||||| |||| Sbjct: 868 cgacaacatgctgtacgcgcaggtggac 895
>dbj|AK072635.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133F15, full insert sequence Length = 1229 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 84 cgacaacatgctgtacccgcaggaggac 111 |||||||||||||||| |||||| |||| Sbjct: 511 cgacaacatgctgtacgcgcaggtggac 538
>emb|AL732360.12| Mouse DNA sequence from clone RP23-405B14 on chromosome X, complete sequence Length = 197398 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 298 ccagaagctgcttatttcca 317 |||||||||||||||||||| Sbjct: 30561 ccagaagctgcttatttcca 30542
>gb|AC159642.2| Mus musculus BAC clone RP23-415N22 from chromosome 12, complete sequence Length = 197100 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 ccagaagctgcttatttcca 317 |||||||||||||||||||| Sbjct: 158117 ccagaagctgcttatttcca 158136
>gb|BC062812.1| Mus musculus polymerase (RNA) II (DNA directed) polypeptide I, transcript variant 1, mRNA (cDNA clone MGC:73656 IMAGE:3466417), complete cds Length = 707 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 88 aacatgctgtacccgcaggaggacaagg 115 |||||||||||||| |||||||||||| Sbjct: 336 aacatgctgtaccccaaggaggacaagg 363
>gb|AC124539.4| Mus musculus BAC clone RP23-359M14 from chromosome 12, complete sequence Length = 183684 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 ccagaagctgcttatttcca 317 |||||||||||||||||||| Sbjct: 36784 ccagaagctgcttatttcca 36803 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,687,713 Number of Sequences: 3902068 Number of extensions: 4687713 Number of successful extensions: 88136 Number of sequences better than 10.0: 65 Number of HSP's better than 10.0 without gapping: 65 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 87907 Number of HSP's gapped (non-prelim): 228 length of query: 632 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 609 effective length of database: 17,143,297,704 effective search space: 10440268301736 effective search space used: 10440268301736 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)