ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags39e05 |
|---|---|
| Clone Library Name | barley_pub |
>UCRI_MAIZE (P49727) Ubiquinol-cytochrome c reductase iron-sulfur subunit,| mitochondrial precursor (EC 1.10.2.2) (Rieske iron-sulfur protein) (RISP) Length = 273 Score = 287 bits (735), Expect = 2e-77 Identities = 151/210 (71%), Positives = 171/210 (81%), Gaps = 5/210 (2%) Frame = +3 Query: 66 MLRVAGRRISSHLAWRPXXXXXXGRTPLVG-GLPGEDFPWDQN---PRFAIESPFYVAAR 233 MLRVAGRR+SS L+WRP G PL G G+P D + PRF+I+SPF+VA+R Sbjct: 1 MLRVAGRRLSSSLSWRPAAAVARG--PLAGAGVPDRDDDSARGRSQPRFSIDSPFFVASR 58 Query: 234 GFSA-ESLVPRSQDVGLAELPATAAALKNPCAKIVYDEYNHKRYPPGDPSKRAFAYFVLS 410 GFS+ E++VPR+QD GLA+LPAT AA+KNP K+VYDEYNH+RYPPGDPSKRAFAYFVLS Sbjct: 59 GFSSTETVVPRNQDAGLADLPATVAAVKNPNPKVVYDEYNHERYPPGDPSKRAFAYFVLS 118 Query: 411 GGRFVYASXXXXXXXXXXXSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRR 590 GGRF+YAS SMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRR Sbjct: 119 GGRFIYASLLRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRR 178 Query: 591 TEDDVKLANSVDVASLRDPQEDAVRVKNPE 680 TEDD+KLANSVDVASLR P++DA RVKNPE Sbjct: 179 TEDDIKLANSVDVASLRHPEQDAERVKNPE 208
>UCRI_SOLTU (P37841) Ubiquinol-cytochrome c reductase iron-sulfur subunit,| mitochondrial precursor (EC 1.10.2.2) (Rieske iron-sulfur protein) (RISP) Length = 265 Score = 234 bits (597), Expect = 2e-61 Identities = 126/205 (61%), Positives = 149/205 (72%) Frame = +3 Query: 66 MLRVAGRRISSHLAWRPXXXXXXGRTPLVGGLPGEDFPWDQNPRFAIESPFYVAARGFSA 245 MLRVAGRR+SS A + +D ++P ++ S F RGFS+ Sbjct: 1 MLRVAGRRLSSSAARSSSTFFTRSSFTVT-----DDSSPARSPSPSLTSSFLDQIRGFSS 55 Query: 246 ESLVPRSQDVGLAELPATAAALKNPCAKIVYDEYNHKRYPPGDPSKRAFAYFVLSGGRFV 425 S+ P Q +++LPAT AA+KNP +KIVYD+ NH+RYPPGDPSKRAFAYFVL+GGRFV Sbjct: 56 NSVSPAHQLGLVSDLPATVAAIKNPSSKIVYDDSNHERYPPGDPSKRAFAYFVLTGGRFV 115 Query: 426 YASXXXXXXXXXXXSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEDDV 605 YAS SMSASKDVLALASLEVDLSSIEPG+TVTVKWRGKPVFIRRRT+DD+ Sbjct: 116 YASSVRLLILKFVLSMSASKDVLALASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTDDDI 175 Query: 606 KLANSVDVASLRDPQEDAVRVKNPE 680 KLANSVD+ +LRDPQ+DA RVKNPE Sbjct: 176 KLANSVDLGTLRDPQQDAERVKNPE 200
>UCRI3_TOBAC (P51133) Ubiquinol-cytochrome c reductase iron-sulfur subunit 3,| mitochondrial precursor (EC 1.10.2.2) (Rieske iron-sulfur protein 3) (RISP3) Length = 268 Score = 233 bits (595), Expect = 3e-61 Identities = 127/205 (61%), Positives = 147/205 (71%) Frame = +3 Query: 66 MLRVAGRRISSHLAWRPXXXXXXGRTPLVGGLPGEDFPWDQNPRFAIESPFYVAARGFSA 245 MLR+AGR++SS A R R P +P ++ S F RGFS+ Sbjct: 1 MLRIAGRKLSSSAATRSSSAFFT-RNPFTFTDDSSSPARSPSPA-SLASQFLDQFRGFSS 58 Query: 246 ESLVPRSQDVGLAELPATAAALKNPCAKIVYDEYNHKRYPPGDPSKRAFAYFVLSGGRFV 425 S+ P Q +++LPAT AA+KNP +KIVYD+ NH+RYPPGDPSKRAFAYFVL+GGRFV Sbjct: 59 NSVSPAHQTGLVSDLPATVAAIKNPSSKIVYDDSNHERYPPGDPSKRAFAYFVLTGGRFV 118 Query: 426 YASXXXXXXXXXXXSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEDDV 605 YAS SMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTE+D+ Sbjct: 119 YASLVRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDI 178 Query: 606 KLANSVDVASLRDPQEDAVRVKNPE 680 LANSVD+ SLRDPQ+DA RVKNPE Sbjct: 179 NLANSVDLGSLRDPQQDAERVKNPE 203
>UCRI5_TOBAC (P51135) Ubiquinol-cytochrome c reductase iron-sulfur subunit 5,| mitochondrial precursor (EC 1.10.2.2) (Rieske iron-sulfur protein 5) (RISP5) Length = 268 Score = 232 bits (591), Expect = 9e-61 Identities = 126/205 (61%), Positives = 147/205 (71%) Frame = +3 Query: 66 MLRVAGRRISSHLAWRPXXXXXXGRTPLVGGLPGEDFPWDQNPRFAIESPFYVAARGFSA 245 MLR+AGR++SS A R R P +P ++ S F RGFS+ Sbjct: 1 MLRIAGRKLSSSAAARSSSAFFT-RNPFTFTDDSSSPTRSPSPT-SLASQFLDQFRGFSS 58 Query: 246 ESLVPRSQDVGLAELPATAAALKNPCAKIVYDEYNHKRYPPGDPSKRAFAYFVLSGGRFV 425 S+ P Q +++LPAT AA+KNP +KIVYD+ NH+RYPPGDPSKRAFAYFVL+GGRFV Sbjct: 59 NSVSPAHQTGLVSDLPATVAAIKNPSSKIVYDDSNHERYPPGDPSKRAFAYFVLTGGRFV 118 Query: 426 YASXXXXXXXXXXXSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEDDV 605 YAS SMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRT++D+ Sbjct: 119 YASLVRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTDEDI 178 Query: 606 KLANSVDVASLRDPQEDAVRVKNPE 680 LANSVD+ SLRDPQ+DA RVKNPE Sbjct: 179 NLANSVDLGSLRDPQQDAERVKNPE 203
>UCRI2_TOBAC (P51132) Ubiquinol-cytochrome c reductase iron-sulfur subunit 2,| mitochondrial precursor (EC 1.10.2.2) (Rieske iron-sulfur protein 2) (RISP2) Length = 272 Score = 231 bits (590), Expect = 1e-60 Identities = 129/209 (61%), Positives = 148/209 (70%), Gaps = 4/209 (1%) Frame = +3 Query: 66 MLRVAGRRISSHLAWRPXXXXXXGRTPLVGGLPGEDFPWDQNPRF---AIESPFYVAARG 236 MLR+AGRR SS W P + + +PR ++ S F RG Sbjct: 1 MLRIAGRRASSLSRW-PVRSVAPSSSAFISANHFSSDDDSSSPRSISPSLASVFLHHTRG 59 Query: 237 FSAESLVPRSQDVGLA-ELPATAAALKNPCAKIVYDEYNHKRYPPGDPSKRAFAYFVLSG 413 FS+ S V + D+GL +LP T AA+KNP +KIVYDE+NH+RYPPGDPSKRAFAYFVL+G Sbjct: 60 FSSNS-VSHAHDMGLVPDLPPTVAAIKNPTSKIVYDEHNHERYPPGDPSKRAFAYFVLTG 118 Query: 414 GRFVYASXXXXXXXXXXXSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRT 593 GRFVYAS SMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRT Sbjct: 119 GRFVYASLVRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRT 178 Query: 594 EDDVKLANSVDVASLRDPQEDAVRVKNPE 680 EDD+ LANSVD+ SLRDPQ+DA RVK+PE Sbjct: 179 EDDINLANSVDLGSLRDPQQDAERVKSPE 207
>UCRI1_TOBAC (P49729) Ubiquinol-cytochrome c reductase iron-sulfur subunit 1,| mitochondrial precursor (EC 1.10.2.2) (Rieske iron-sulfur protein 1) (RISP1) (Fragment) Length = 258 Score = 226 bits (576), Expect = 5e-59 Identities = 117/161 (72%), Positives = 132/161 (81%), Gaps = 1/161 (0%) Frame = +3 Query: 201 AIESPFYVAARGFSAESLVPRSQDVGLA-ELPATAAALKNPCAKIVYDEYNHKRYPPGDP 377 ++ S F RGFS+ S+ P + D+GL +LP T AA+KNP +KIVYDE+NH+RYPPGDP Sbjct: 34 SLASVFLHHTRGFSSNSVSP-AHDMGLVPDLPPTVAAIKNPTSKIVYDEHNHERYPPGDP 92 Query: 378 SKRAFAYFVLSGGRFVYASXXXXXXXXXXXSMSASKDVLALASLEVDLSSIEPGTTVTVK 557 SKRAFAYFVL+GGRFVYAS SMSASKDVLALASLEVDLSSIEPGTTVTVK Sbjct: 93 SKRAFAYFVLTGGRFVYASLMRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVK 152 Query: 558 WRGKPVFIRRRTEDDVKLANSVDVASLRDPQEDAVRVKNPE 680 WRGKPVFIRRRTEDD+ LANSVD+ SLRDPQ+DA RVKNPE Sbjct: 153 WRGKPVFIRRRTEDDISLANSVDLGSLRDPQQDAERVKNPE 193
>UCRI4_TOBAC (P51134) Ubiquinol-cytochrome c reductase iron-sulfur subunit 4,| mitochondrial precursor (EC 1.10.2.2) (Rieske iron-sulfur protein 4) (RISP4) Length = 236 Score = 220 bits (560), Expect = 4e-57 Identities = 114/161 (70%), Positives = 130/161 (80%), Gaps = 1/161 (0%) Frame = +3 Query: 201 AIESPFYVAARGFSAESLVPRSQDVGLA-ELPATAAALKNPCAKIVYDEYNHKRYPPGDP 377 ++ S + GFS+ S V + D+GL +LP T AA+KNP +KIVYDE+NH+RYPPGDP Sbjct: 12 SVTSNSFSIISGFSSNS-VSHAHDMGLVPDLPPTVAAIKNPTSKIVYDEHNHERYPPGDP 70 Query: 378 SKRAFAYFVLSGGRFVYASXXXXXXXXXXXSMSASKDVLALASLEVDLSSIEPGTTVTVK 557 SKRAFAYFVL+GGRFVYAS SMSASKDVLALASLEVDLSSIEPGTTVTVK Sbjct: 71 SKRAFAYFVLTGGRFVYASLVRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVK 130 Query: 558 WRGKPVFIRRRTEDDVKLANSVDVASLRDPQEDAVRVKNPE 680 WRGKPVFIRRRTEDD+ LANSVD+ SLRDPQ+DA RVK+PE Sbjct: 131 WRGKPVFIRRRTEDDINLANSVDLGSLRDPQQDAERVKSPE 171
>UCRI_NEUCR (P07056) Ubiquinol-cytochrome c reductase iron-sulfur subunit,| mitochondrial precursor (EC 1.10.2.2) (Rieske iron-sulfur protein) (RISP) Length = 231 Score = 95.1 bits (235), Expect = 2e-19 Identities = 48/97 (49%), Positives = 65/97 (67%) Frame = +3 Query: 390 FAYFVLSGGRFVYASXXXXXXXXXXXSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGK 569 F+YF++ + A+ +MSAS DVLA+A +EVDL++I G V +KWRGK Sbjct: 70 FSYFMVGTMGAITAAGAKSTIQEFLKNMSASADVLAMAKVEVDLNAIPEGKNVIIKWRGK 129 Query: 570 PVFIRRRTEDDVKLANSVDVASLRDPQEDAVRVKNPE 680 PVFIR RT +++ AN V+VA+LRDP+ DA RVK PE Sbjct: 130 PVFIRHRTPAEIEEANKVNVATLRDPETDADRVKKPE 166
>UCRI_YEAST (P08067) Ubiquinol-cytochrome c reductase iron-sulfur subunit,| mitochondrial precursor (EC 1.10.2.2) (Rieske iron-sulfur protein) (RISP) Length = 215 Score = 94.0 bits (232), Expect = 4e-19 Identities = 45/99 (45%), Positives = 69/99 (69%) Frame = +3 Query: 384 RAFAYFVLSGGRFVYASXXXXXXXXXXXSMSASKDVLALASLEVDLSSIEPGTTVTVKWR 563 R++AYF++ + ++ SM+A+ DVLA+A +EV+L++I G V VKW+ Sbjct: 53 RSYAYFMVGAMGLLSSAGAKSTVETFISSMTATADVLAMAKVEVNLAAIPLGKNVVVKWQ 112 Query: 564 GKPVFIRRRTEDDVKLANSVDVASLRDPQEDAVRVKNPE 680 GKPVFIR RT +++ ANSVD+++L+DPQ DA RVK+P+ Sbjct: 113 GKPVFIRHRTPHEIQEANSVDMSALKDPQTDADRVKDPQ 151
>UCRI_SCHPO (Q09154) Ubiquinol-cytochrome c reductase iron-sulfur subunit,| mitochondrial precursor (EC 1.10.2.2) (Rieske iron-sulfur protein) (RISP) Length = 228 Score = 90.9 bits (224), Expect = 3e-18 Identities = 51/115 (44%), Positives = 70/115 (60%) Frame = +3 Query: 336 YDEYNHKRYPPGDPSKRAFAYFVLSGGRFVYASXXXXXXXXXXXSMSASKDVLALASLEV 515 + EY K GD S R +Y ++ + A+ S SAS DVLA++ EV Sbjct: 53 FSEYQTKS--TGDRS-RVISYAMVGTMGALTAAGAQATVHDFLASWSASADVLAMSKAEV 109 Query: 516 DLSSIEPGTTVTVKWRGKPVFIRRRTEDDVKLANSVDVASLRDPQEDAVRVKNPE 680 DLS I G + VKW+GKPVFIR RT ++++ ANSVD+++LRDPQ D+ RV+ PE Sbjct: 110 DLSKIPEGKNLVVKWQGKPVFIRHRTPEEIQEANSVDISTLRDPQADSDRVQKPE 164
>UCRI_PONPY (Q69BK3) Ubiquinol-cytochrome c reductase iron-sulfur subunit,| mitochondrial precursor (EC 1.10.2.2) (Rieske iron-sulfur protein) (RISP) Length = 274 Score = 85.9 bits (211), Expect = 1e-16 Identities = 43/101 (42%), Positives = 60/101 (59%) Frame = +3 Query: 378 SKRAFAYFVLSGGRFVYASXXXXXXXXXXXSMSASKDVLALASLEVDLSSIEPGTTVTVK 557 +++ F+Y V A SMSAS DVLALA +E+ LS I G +T K Sbjct: 109 ARKGFSYLVTGVTTVGVAYAAKNVVTQFVSSMSASADVLALAKIEIKLSDIPEGKNMTFK 168 Query: 558 WRGKPVFIRRRTEDDVKLANSVDVASLRDPQEDAVRVKNPE 680 WRGKP+F+R RT+ +++ +V+++ LRDPQ D RVK PE Sbjct: 169 WRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPE 209
>UCRI_THEGE (Q69BK2) Ubiquinol-cytochrome c reductase iron-sulfur subunit,| mitochondrial precursor (EC 1.10.2.2) (Rieske iron-sulfur protein) (RISP) Length = 274 Score = 85.1 bits (209), Expect = 2e-16 Identities = 47/125 (37%), Positives = 69/125 (55%), Gaps = 9/125 (7%) Frame = +3 Query: 333 VYDEYNHKRYPPGDPSK---------RAFAYFVLSGGRFVYASXXXXXXXXXXXSMSASK 485 V D Y+++R D +K + F+Y V + A SMSAS Sbjct: 85 VPDFYDYRRLEVLDSTKSSRESSEARKGFSYLVTAVTTVGVAYAAKNAVTQFISSMSASA 144 Query: 486 DVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEDDVKLANSVDVASLRDPQEDAVR 665 DVLA+A +E++LS I G + KWRGKP+F+R RT+ +++ +V+++ LRDPQ D R Sbjct: 145 DVLAMAKIEINLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDR 204 Query: 666 VKNPE 680 VK PE Sbjct: 205 VKKPE 209
>UCRI_HYLSY (Q69BJ6) Ubiquinol-cytochrome c reductase iron-sulfur subunit,| mitochondrial precursor (EC 1.10.2.2) (Rieske iron-sulfur protein) (RISP) Length = 274 Score = 84.7 bits (208), Expect = 2e-16 Identities = 42/101 (41%), Positives = 60/101 (59%) Frame = +3 Query: 378 SKRAFAYFVLSGGRFVYASXXXXXXXXXXXSMSASKDVLALASLEVDLSSIEPGTTVTVK 557 +++ F+Y V + A SMSAS DVLALA +E+ LS I G + K Sbjct: 109 ARKGFSYLVTAVTTVGVAYAAKNAVTQFVSSMSASADVLALAKIEIKLSDIPEGKNMAFK 168 Query: 558 WRGKPVFIRRRTEDDVKLANSVDVASLRDPQEDAVRVKNPE 680 WRGKP+F+R RT+ +++ +V+++ LRDPQ D RVK PE Sbjct: 169 WRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKRPE 209
>UCRI_COLPO (Q69BK0) Ubiquinol-cytochrome c reductase iron-sulfur subunit,| mitochondrial precursor (EC 1.10.2.2) (Rieske iron-sulfur protein) (RISP) Length = 274 Score = 84.7 bits (208), Expect = 2e-16 Identities = 42/101 (41%), Positives = 61/101 (60%) Frame = +3 Query: 378 SKRAFAYFVLSGGRFVYASXXXXXXXXXXXSMSASKDVLALASLEVDLSSIEPGTTVTVK 557 ++++F+Y V + A SMSAS DVLA+A +EV LS I G + K Sbjct: 109 ARKSFSYMVTAVTTVGVAYAAKNAVTQFVSSMSASADVLAMAKIEVKLSDIPEGKNMAFK 168 Query: 558 WRGKPVFIRRRTEDDVKLANSVDVASLRDPQEDAVRVKNPE 680 WRGKP+F+R RT+ +++ +V+++ LRDPQ D RVK PE Sbjct: 169 WRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPE 209
>UCRI_PANTR (Q69BK5) Ubiquinol-cytochrome c reductase iron-sulfur subunit,| mitochondrial precursor (EC 1.10.2.2) (Rieske iron-sulfur protein) (RISP) Length = 274 Score = 84.3 bits (207), Expect = 3e-16 Identities = 42/101 (41%), Positives = 59/101 (58%) Frame = +3 Query: 378 SKRAFAYFVLSGGRFVYASXXXXXXXXXXXSMSASKDVLALASLEVDLSSIEPGTTVTVK 557 +++ F+Y V A SMSAS DVLALA +E+ LS I G + K Sbjct: 109 ARKGFSYLVTGVTTVGVAYAAKNAVTQFVSSMSASADVLALAKIEIKLSDIPEGKNMAFK 168 Query: 558 WRGKPVFIRRRTEDDVKLANSVDVASLRDPQEDAVRVKNPE 680 WRGKP+F+R RT+ +++ +V+++ LRDPQ D RVK PE Sbjct: 169 WRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPE 209
>UCRI_PANPA (Q69BK6) Ubiquinol-cytochrome c reductase iron-sulfur subunit,| mitochondrial precursor (EC 1.10.2.2) (Rieske iron-sulfur protein) (RISP) Length = 274 Score = 84.3 bits (207), Expect = 3e-16 Identities = 42/101 (41%), Positives = 59/101 (58%) Frame = +3 Query: 378 SKRAFAYFVLSGGRFVYASXXXXXXXXXXXSMSASKDVLALASLEVDLSSIEPGTTVTVK 557 +++ F+Y V A SMSAS DVLALA +E+ LS I G + K Sbjct: 109 ARKGFSYLVTGVTTVGVAYAAKNAVTQFVSSMSASADVLALAKIEIKLSDIPEGKNMAFK 168 Query: 558 WRGKPVFIRRRTEDDVKLANSVDVASLRDPQEDAVRVKNPE 680 WRGKP+F+R RT+ +++ +V+++ LRDPQ D RVK PE Sbjct: 169 WRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPE 209
>UCRI_HUMAN (P47985) Ubiquinol-cytochrome c reductase iron-sulfur subunit,| mitochondrial precursor (EC 1.10.2.2) (Rieske iron-sulfur protein) (RISP) Length = 274 Score = 84.3 bits (207), Expect = 3e-16 Identities = 42/101 (41%), Positives = 59/101 (58%) Frame = +3 Query: 378 SKRAFAYFVLSGGRFVYASXXXXXXXXXXXSMSASKDVLALASLEVDLSSIEPGTTVTVK 557 +++ F+Y V A SMSAS DVLALA +E+ LS I G + K Sbjct: 109 ARKGFSYLVTGVTTVGVAYAAKNAVTQFVSSMSASADVLALAKIEIKLSDIPEGKNMAFK 168 Query: 558 WRGKPVFIRRRTEDDVKLANSVDVASLRDPQEDAVRVKNPE 680 WRGKP+F+R RT+ +++ +V+++ LRDPQ D RVK PE Sbjct: 169 WRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPE 209
>UCRI_GORGO (Q69BK4) Ubiquinol-cytochrome c reductase iron-sulfur subunit,| mitochondrial precursor (EC 1.10.2.2) (Rieske iron-sulfur protein) (RISP) Length = 274 Score = 84.3 bits (207), Expect = 3e-16 Identities = 42/101 (41%), Positives = 59/101 (58%) Frame = +3 Query: 378 SKRAFAYFVLSGGRFVYASXXXXXXXXXXXSMSASKDVLALASLEVDLSSIEPGTTVTVK 557 +++ F+Y V A SMSAS DVLALA +E+ LS I G + K Sbjct: 109 ARKGFSYLVTGVTTVGVAYAAKNAVTQFVSSMSASADVLALAKIEIKLSDIPEGKNMAFK 168 Query: 558 WRGKPVFIRRRTEDDVKLANSVDVASLRDPQEDAVRVKNPE 680 WRGKP+F+R RT+ +++ +V+++ LRDPQ D RVK PE Sbjct: 169 WRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPE 209
>UCRI_CERAE (Q69BK1) Ubiquinol-cytochrome c reductase iron-sulfur subunit,| mitochondrial precursor (EC 1.10.2.2) (Rieske iron-sulfur protein) (RISP) Length = 274 Score = 84.3 bits (207), Expect = 3e-16 Identities = 47/125 (37%), Positives = 69/125 (55%), Gaps = 9/125 (7%) Frame = +3 Query: 333 VYDEYNHKRYPPGDPSK---------RAFAYFVLSGGRFVYASXXXXXXXXXXXSMSASK 485 V D Y+++R D +K + F+Y V + A SMSAS Sbjct: 85 VPDFYDYRRLEVLDSTKSSRESSEARKGFSYLVTAVTTVGVAYAAKNVVTQFISSMSASA 144 Query: 486 DVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEDDVKLANSVDVASLRDPQEDAVR 665 DVLA+A +E++LS I G + KWRGKP+F+R RT+ +++ +V+++ LRDPQ D R Sbjct: 145 DVLAMAKIEINLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEEEAAVELSQLRDPQHDLDR 204 Query: 666 VKNPE 680 VK PE Sbjct: 205 VKKPE 209
>UCRI_RHORU (P23136) Ubiquinol-cytochrome c reductase iron-sulfur subunit (EC| 1.10.2.2) (Rieske iron-sulfur protein) (RISP) Length = 182 Score = 84.0 bits (206), Expect = 4e-16 Identities = 48/113 (42%), Positives = 63/113 (55%) Frame = +3 Query: 342 EYNHKRYPPGDPSKRAFAYFVLSGGRFVYASXXXXXXXXXXXSMSASKDVLALASLEVDL 521 E H PG S R F++ G V A M+ + D LALAS EVD+ Sbjct: 2 EAEHTASTPGGESSRRD--FLIYGTTAVGAVGVALAVWPFIDFMNPAADTLALASTEVDV 59 Query: 522 SSIEPGTTVTVKWRGKPVFIRRRTEDDVKLANSVDVASLRDPQEDAVRVKNPE 680 S+I G +TV WRGKPVF+R RT+ ++ +A +VD ASLRDPQ D RV+ + Sbjct: 60 SAIAEGQAITVTWRGKPVFVRHRTQKEIVVARAVDPASLRDPQTDEARVQQAQ 112
>UCRI_RAT (P20788) Ubiquinol-cytochrome c reductase iron-sulfur subunit,| mitochondrial precursor (EC 1.10.2.2) (Rieske iron-sulfur protein) (RISP) (Liver regeneration-related protein LRRGT00195) Length = 274 Score = 83.6 bits (205), Expect = 5e-16 Identities = 41/101 (40%), Positives = 59/101 (58%) Frame = +3 Query: 378 SKRAFAYFVLSGGRFVYASXXXXXXXXXXXSMSASKDVLALASLEVDLSSIEPGTTVTVK 557 +++ F+Y V + A SMSAS DVLA++ +E+ LS I G + K Sbjct: 109 ARKGFSYLVTATTTVGVAYAAKNAVSQFVSSMSASADVLAMSKIEIKLSDIPEGKNMAFK 168 Query: 558 WRGKPVFIRRRTEDDVKLANSVDVASLRDPQEDAVRVKNPE 680 WRGKP+F+R RT+ ++ +V+V+ LRDPQ D RVK PE Sbjct: 169 WRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPE 209
>UCRI_BOVIN (P13272) Ubiquinol-cytochrome c reductase iron-sulfur subunit,| mitochondrial precursor (EC 1.10.2.2) (Rieske iron-sulfur protein) (RISP) [Contains: Ubiquinol-cytochrome c reductase 8 kDa protein (Complex III subunit IX)] Length = 274 Score = 83.2 bits (204), Expect = 7e-16 Identities = 41/101 (40%), Positives = 59/101 (58%) Frame = +3 Query: 378 SKRAFAYFVLSGGRFVYASXXXXXXXXXXXSMSASKDVLALASLEVDLSSIEPGTTVTVK 557 +++ F+Y V + A SMSAS DVLA++ +E+ LS I G + K Sbjct: 109 ARKGFSYLVTATTTVGVAYAAKNVVSQFVSSMSASADVLAMSKIEIKLSDIPEGKNMAFK 168 Query: 558 WRGKPVFIRRRTEDDVKLANSVDVASLRDPQEDAVRVKNPE 680 WRGKP+F+R RT+ ++ +V+V+ LRDPQ D RVK PE Sbjct: 169 WRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPE 209
>UCRI_MOUSE (Q9CR68) Ubiquinol-cytochrome c reductase iron-sulfur subunit,| mitochondrial precursor (EC 1.10.2.2) (Rieske iron-sulfur protein) (RISP) Length = 274 Score = 82.8 bits (203), Expect = 9e-16 Identities = 41/101 (40%), Positives = 59/101 (58%) Frame = +3 Query: 378 SKRAFAYFVLSGGRFVYASXXXXXXXXXXXSMSASKDVLALASLEVDLSSIEPGTTVTVK 557 +++ F+Y V + A SMSAS DVLA++ +E+ LS I G + K Sbjct: 109 ARKGFSYLVTATTTVGVAYAAKNVVSQFVSSMSASADVLAMSKIEIKLSDIPEGKNMAFK 168 Query: 558 WRGKPVFIRRRTEDDVKLANSVDVASLRDPQEDAVRVKNPE 680 WRGKP+F+R RT+ ++ +V+V+ LRDPQ D RVK PE Sbjct: 169 WRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLDRVKKPE 209
>UCRI_LAGLA (Q69BJ8) Ubiquinol-cytochrome c reductase iron-sulfur subunit,| mitochondrial precursor (EC 1.10.2.2) (Rieske iron-sulfur protein) (RISP) Length = 274 Score = 82.4 bits (202), Expect = 1e-15 Identities = 39/101 (38%), Positives = 59/101 (58%) Frame = +3 Query: 378 SKRAFAYFVLSGGRFVYASXXXXXXXXXXXSMSASKDVLALASLEVDLSSIEPGTTVTVK 557 +++ F+Y V + SMSAS DVLA++ +E+ LS I G + K Sbjct: 109 ARKGFSYLVTAATAVGVTYAAKSIVTQFVSSMSASADVLAMSKIEIKLSDIPEGKNMAFK 168 Query: 558 WRGKPVFIRRRTEDDVKLANSVDVASLRDPQEDAVRVKNPE 680 WRGKP+F+R RT+ +++ +V+++ LRDPQ D RVK PE Sbjct: 169 WRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPE 209
>UCRI_SAISC (Q69BJ7) Ubiquinol-cytochrome c reductase iron-sulfur subunit,| mitochondrial precursor (EC 1.10.2.2) (Rieske iron-sulfur protein) (RISP) Length = 274 Score = 81.6 bits (200), Expect = 2e-15 Identities = 39/101 (38%), Positives = 59/101 (58%) Frame = +3 Query: 378 SKRAFAYFVLSGGRFVYASXXXXXXXXXXXSMSASKDVLALASLEVDLSSIEPGTTVTVK 557 +++ F+Y V + SMSAS DVLA++ +E+ LS I G + K Sbjct: 109 ARKVFSYMVTATTAVGVTYAAKSIVTQFISSMSASADVLAMSKIEIKLSDIPEGKNMAFK 168 Query: 558 WRGKPVFIRRRTEDDVKLANSVDVASLRDPQEDAVRVKNPE 680 WRGKP+F+R RT+ +++ +V+++ LRDPQ D RVK PE Sbjct: 169 WRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPE 209
>UCRI_AOTAZ (Q69BJ9) Ubiquinol-cytochrome c reductase iron-sulfur subunit,| mitochondrial precursor (EC 1.10.2.2) (Rieske iron-sulfur protein) (RISP) Length = 274 Score = 81.6 bits (200), Expect = 2e-15 Identities = 39/101 (38%), Positives = 59/101 (58%) Frame = +3 Query: 378 SKRAFAYFVLSGGRFVYASXXXXXXXXXXXSMSASKDVLALASLEVDLSSIEPGTTVTVK 557 +++ F+Y V + SMSAS DVLA++ +E+ LS I G + K Sbjct: 109 ARKGFSYLVTATTAVGVTYAAKSIVTQFVSSMSASADVLAMSKIEIKLSDIPEGKNMAFK 168 Query: 558 WRGKPVFIRRRTEDDVKLANSVDVASLRDPQEDAVRVKNPE 680 WRGKP+F+R RT+ +++ +V+++ LRDPQ D RVK PE Sbjct: 169 WRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPE 209
>UCRI_RICPR (Q9ZDQ5) Ubiquinol-cytochrome c reductase iron-sulfur subunit (EC| 1.10.2.2) (Rieske iron-sulfur protein) (RISP) Length = 177 Score = 80.9 bits (198), Expect = 3e-15 Identities = 39/68 (57%), Positives = 51/68 (75%) Frame = +3 Query: 468 SMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEDDVKLANSVDVASLRDP 647 S + S DVLAL+S+EVDLS+I G TVTVKW+GKP+FI RT D++ A +V ++ L DP Sbjct: 40 SFNPSADVLALSSIEVDLSNIAIGQTVTVKWQGKPIFITNRTHDEIAAARAVKMSELIDP 99 Query: 648 QEDAVRVK 671 + D VRVK Sbjct: 100 ERDEVRVK 107
>UCRI_RHOCA (P08500) Ubiquinol-cytochrome c reductase iron-sulfur subunit (EC| 1.10.2.2) (Rieske iron-sulfur protein) (RISP) Length = 191 Score = 77.4 bits (189), Expect = 4e-14 Identities = 37/58 (63%), Positives = 48/58 (82%) Frame = +3 Query: 471 MSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEDDVKLANSVDVASLRD 644 M+AS DV A+AS+ VD+S++E GT +TVKWRGKPVFIRRR E D++LA SV + +LRD Sbjct: 38 MNASADVKAMASIFVDVSAVEVGTQLTVKWRGKPVFIRRRDEKDIELARSVPLGALRD 95
>UCRI_PARDE (P05417) Ubiquinol-cytochrome c reductase iron-sulfur subunit (EC| 1.10.2.2) (Rieske iron-sulfur protein) (RISP) Length = 190 Score = 77.0 bits (188), Expect = 5e-14 Identities = 40/89 (44%), Positives = 54/89 (60%) Frame = +3 Query: 378 SKRAFAYFVLSGGRFVYASXXXXXXXXXXXSMSASKDVLALASLEVDLSSIEPGTTVTVK 557 ++R F Y+ +G V A M+ S DV ALAS++VD+S +E GT +TVK Sbjct: 14 TRRDFLYYATAGAGTVAAGAAAWTLVN---QMNPSADVQALASIQVDVSGVETGTQLTVK 70 Query: 558 WRGKPVFIRRRTEDDVKLANSVDVASLRD 644 W GKPVFIRRRTED+++ VD+ L D Sbjct: 71 WLGKPVFIRRRTEDEIQAGREVDLGQLID 99
>UCRI_RHOSH (Q02762) Ubiquinol-cytochrome c reductase iron-sulfur subunit (EC| 1.10.2.2) (Rieske iron-sulfur protein) (RISP) Length = 187 Score = 70.9 bits (172), Expect = 3e-12 Identities = 39/89 (43%), Positives = 53/89 (59%) Frame = +3 Query: 378 SKRAFAYFVLSGGRFVYASXXXXXXXXXXXSMSASKDVLALASLEVDLSSIEPGTTVTVK 557 ++R F Y+ +G V M+ S DV ALAS+ VD+SS+EPG +TVK Sbjct: 10 TRRDFLYYATAGAGAV---ATGAAVWPLINQMNPSADVQALASIFVDVSSVEPGVQLTVK 66 Query: 558 WRGKPVFIRRRTEDDVKLANSVDVASLRD 644 + GKP+FIRRRTE D++L SV + L D Sbjct: 67 FLGKPIFIRRRTEADIELGRSVQLGQLVD 95
>UCRI_BRAJA (P51130) Ubiquinol-cytochrome c reductase iron-sulfur subunit (EC| 1.10.2.2) (Rieske iron-sulfur protein) (RISP) Length = 176 Score = 64.3 bits (155), Expect = 3e-10 Identities = 39/100 (39%), Positives = 53/100 (53%) Frame = +3 Query: 375 PSKRAFAYFVLSGGRFVYASXXXXXXXXXXXSMSASKDVLALASLEVDLSSIEPGTTVTV 554 P++R F FV +G + AS + A A +EVDLS I G + V Sbjct: 10 PTRRDFL-FVATGAAAAVGGAAALWPFISQMNPDAST-IAAGAPIEVDLSPIAEGQDIKV 67 Query: 555 KWRGKPVFIRRRTEDDVKLANSVDVASLRDPQEDAVRVKN 674 WRGKP++I RT+ + A +V+VASL DPQ D RVK+ Sbjct: 68 FWRGKPIYISHRTKKQIDEARAVNVASLPDPQSDEARVKS 107
>UCRI_RHOVI (P81380) Ubiquinol-cytochrome c reductase iron-sulfur subunit (EC| 1.10.2.2) (Rieske iron-sulfur protein) (RISP) Length = 179 Score = 60.8 bits (146), Expect = 4e-09 Identities = 27/61 (44%), Positives = 40/61 (65%) Frame = +3 Query: 489 VLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEDDVKLANSVDVASLRDPQEDAVRV 668 + A A +++D+S + G V V WRGKP+FIR RT +++ + DV +L DPQ D+ RV Sbjct: 45 IAAGAPIDIDISPVTEGQIVRVFWRGKPIFIRHRTAKEIQSEEAADVGALIDPQPDSARV 104 Query: 669 K 671 K Sbjct: 105 K 105
>UCRI_CHRVI (O31214) Ubiquinol-cytochrome c reductase iron-sulfur subunit (EC| 1.10.2.2) (Rieske iron-sulfur protein) (RISP) Length = 207 Score = 41.6 bits (96), Expect = 0.002 Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 4/63 (6%) Frame = +3 Query: 501 ASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEDDVKLANSVDVASLRDPQEDAVR----V 668 A +E D+S +EPG + VKWRG PV++ R+ + + +S D L DP + + Sbjct: 58 APVEADISKLEPGALLRVKWRGMPVWVVHRSSEMLAALSSND-PKLVDPTSEVPQQPDYC 116 Query: 669 KNP 677 KNP Sbjct: 117 KNP 119
>LP61_EIMTE (P15714) Antigen LPMC-61 (Fragment)| Length = 255 Score = 37.4 bits (85), Expect = 0.043 Identities = 39/169 (23%), Positives = 61/169 (36%), Gaps = 14/169 (8%) Frame = -2 Query: 660 PHPPVDHGEMQHQH-------YWPASHRLQSCA**KLACPATLQSQWYRAQYLTGQPQGK 502 P P +D + Q QH WP R Q P Q QW Q+ Q Q + Sbjct: 27 PQPWLDRQQQQQQHNQQLQKQQWPEGQRQQ-------LWPEQQQQQWPE-QHQQAQQQQQ 78 Query: 501 QAQAHPYLLTYSG-QTLGRANATTRHTQISHRSTQSRQRHACWGHQVGTSCGYTRRRQFW 325 Q P + Q + + Q HR +Q+ Q CG +++Q Sbjct: 79 WPQQQPQMQQEQWPQQQPQVQQQQQWPQQQHRRQHGQQQQCMNSQQQLQQCGQQQQQQLQ 138 Query: 324 HRDSSEQPQLLGAQPTLHPGSSEQEIQPKSLWQ------QRRRGIQWRS 196 + S +Q Q Q P +Q+ P+ Q Q+++ QW++ Sbjct: 139 QQWSEQQQQQQQQQWPEQPEQQQQQQWPEQQQQQWSDQNQQQQAQQWQA 187
>KCAB1_MUSPU (Q28528) Voltage-gated potassium channel beta-1 subunit (K(+)| channel beta-1 subunit) (Kv-beta-1) Length = 408 Score = 31.2 bits (69), Expect = 3.1 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 3/63 (4%) Frame = -3 Query: 416 PTAQHKVGKGTLAGVTRWVPLVVILVVDNFGTGILQSSRS---CWELSQPYILAPRNKRF 246 P HK+G G + W PL ++ +G G+ +SSR+ C++ + I++ ++ Sbjct: 271 PELYHKIGVGAMT----WSPLACGIISGKYGNGVPESSRASLKCYQWLKERIVSEEGRKQ 326 Query: 245 SRK 237 K Sbjct: 327 QNK 329
>KCAB1_RABIT (Q9XT31) Voltage-gated potassium channel beta-1 subunit (K(+)| channel beta-1 subunit) (Kv-beta-1) Length = 419 Score = 31.2 bits (69), Expect = 3.1 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 3/63 (4%) Frame = -3 Query: 416 PTAQHKVGKGTLAGVTRWVPLVVILVVDNFGTGILQSSRS---CWELSQPYILAPRNKRF 246 P HK+G G + W PL ++ +G G+ +SSR+ C++ + I++ ++ Sbjct: 282 PELYHKIGVGAMT----WSPLACGIISGKYGNGVPESSRASLKCYQWLKERIVSEEGRKQ 337 Query: 245 SRK 237 K Sbjct: 338 QNK 340
>KCAB1_HUMAN (Q14722) Voltage-gated potassium channel beta-1 subunit (K(+)| channel beta-1 subunit) (Kv-beta-1) Length = 419 Score = 31.2 bits (69), Expect = 3.1 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 3/63 (4%) Frame = -3 Query: 416 PTAQHKVGKGTLAGVTRWVPLVVILVVDNFGTGILQSSRS---CWELSQPYILAPRNKRF 246 P HK+G G + W PL ++ +G G+ +SSR+ C++ + I++ ++ Sbjct: 282 PELYHKIGVGAMT----WSPLACGIISGKYGNGVPESSRASLKCYQWLKERIVSEEGRKQ 337 Query: 245 SRK 237 K Sbjct: 338 QNK 340
>KCAB1_RAT (P63144) Voltage-gated potassium channel beta-1 subunit (K(+)| channel beta-1 subunit) (Kv-beta-1) Length = 401 Score = 31.2 bits (69), Expect = 3.1 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 3/63 (4%) Frame = -3 Query: 416 PTAQHKVGKGTLAGVTRWVPLVVILVVDNFGTGILQSSRS---CWELSQPYILAPRNKRF 246 P HK+G G + W PL ++ +G G+ +SSR+ C++ + I++ ++ Sbjct: 264 PELYHKIGVGAMT----WSPLACGIISGKYGNGVPESSRASLKCYQWLKERIVSEEGRKQ 319 Query: 245 SRK 237 K Sbjct: 320 QNK 322
>KCAB1_MOUSE (P63143) Voltage-gated potassium channel beta-1 subunit (K(+)| channel beta-1 subunit) (Kv-beta-1) Length = 401 Score = 31.2 bits (69), Expect = 3.1 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 3/63 (4%) Frame = -3 Query: 416 PTAQHKVGKGTLAGVTRWVPLVVILVVDNFGTGILQSSRS---CWELSQPYILAPRNKRF 246 P HK+G G + W PL ++ +G G+ +SSR+ C++ + I++ ++ Sbjct: 264 PELYHKIGVGAMT----WSPLACGIISGKYGNGVPESSRASLKCYQWLKERIVSEEGRKQ 319 Query: 245 SRK 237 K Sbjct: 320 QNK 322
>KCAB1_CHICK (Q9PWR1) Voltage-gated potassium channel beta-1 subunit (K(+)| channel beta-1 subunit) (Kv-beta-1) Length = 401 Score = 31.2 bits (69), Expect = 3.1 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 3/63 (4%) Frame = -3 Query: 416 PTAQHKVGKGTLAGVTRWVPLVVILVVDNFGTGILQSSRS---CWELSQPYILAPRNKRF 246 P HK+G G + W PL ++ +G G+ +SSR+ C++ + I++ ++ Sbjct: 264 PELYHKIGVGAMT----WSPLACGIISGKYGNGVPESSRAALKCYQWLKEKIISEEGRKQ 319 Query: 245 SRK 237 K Sbjct: 320 QTK 322
>KCAB1_BOVIN (Q4PJK1) Voltage-gated potassium channel beta-1 subunit (K(+)| channel beta-1 subunit) (Kv-beta-1) Length = 401 Score = 31.2 bits (69), Expect = 3.1 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 3/63 (4%) Frame = -3 Query: 416 PTAQHKVGKGTLAGVTRWVPLVVILVVDNFGTGILQSSRS---CWELSQPYILAPRNKRF 246 P HK+G G + W PL ++ +G G+ +SSR+ C++ + I++ ++ Sbjct: 264 PELYHKIGVGAMT----WSPLACGIISGKYGNGVPESSRASLKCYQWLKERIVSEEGRKQ 319 Query: 245 SRK 237 K Sbjct: 320 QNK 322
>DPOE_EMENI (O93845) DNA polymerase epsilon, catalytic subunit A (EC 2.7.7.7)| (DNA polymerase II subunit A) Length = 2207 Score = 30.4 bits (67), Expect = 5.2 Identities = 15/64 (23%), Positives = 30/64 (46%) Frame = +3 Query: 168 EDFPWDQNPRFAIESPFYVAARGFSAESLVPRSQDVGLAELPATAAALKNPCAKIVYDEY 347 +D P D +PR I+ +Y+ G + L+ +PA ++NP ++ + E+ Sbjct: 1097 KDDPGDMDPRSVIDWDYYLERLGSVVQKLIT---------IPAALQKIRNPVPRVAHPEW 1147 Query: 348 NHKR 359 +R Sbjct: 1148 LQRR 1151
>MBHL_RHILV (P18636) Uptake hydrogenase large subunit (EC 1.12.99.6)| (Hydrogenlyase) (Membrane-bound hydrogenase large subunit) Length = 596 Score = 29.6 bits (65), Expect = 8.9 Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 3/67 (4%) Frame = -3 Query: 365 WVPLVVILVVDNFGTGILQSSRSCWELSQPYI---LAPRNKRFSRKASGSNVEGGFNGEA 195 WV +V L D T L S S W LS P + R K+F + G+ G A Sbjct: 130 WVDVVSALSADPKATSALAQSISDWPLSSPGYFKDIQTRLKKFVESGQLGPFKNGYWGNA 189 Query: 194 RILIPGE 174 +P E Sbjct: 190 SYKLPPE 196 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 97,196,834 Number of Sequences: 219361 Number of extensions: 2022664 Number of successful extensions: 5939 Number of sequences better than 10.0: 43 Number of HSP's better than 10.0 without gapping: 5688 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5931 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6712189044 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
