ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags39e04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_472569.1| Oryza sativa (japonica cultivar-group), predic... 400 e-108
2dbj|AK101879.1| Oryza sativa (japonica cultivar-group) cDNA clon... 400 e-108
3gb|AY105923.1| Zea mays PCO122658 mRNA sequence 196 7e-47
4emb|AL606706.3|OSJN00063 Oryza sativa genomic DNA, chromosome 4,... 184 3e-43
5emb|AL606626.3|OSJN00050 Oryza sativa genomic DNA, chromosome 4,... 184 3e-43
6dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 184 3e-43
7ref|NM_105867.2| Arabidopsis thaliana catalytic/ iron ion bindin... 80 1e-11
8gb|AF367274.1|AF367274 Arabidopsis thaliana At1g72090/F28P5_4 mR... 80 1e-11
9gb|BT002712.1| Arabidopsis thaliana At1g72090/F28P5_4 gene, comp... 80 1e-11
10gb|BT013138.1| Lycopersicon esculentum clone 114440F, mRNA sequence 64 7e-07
11gb|AC069273.4|AC069273 Arabidopsis thaliana chromosome 1 BAC F28... 54 7e-04
12ref|XM_545362.2| PREDICTED: Canis familiaris similar to CDK5 reg... 50 0.010
13ref|XM_844340.1| PREDICTED: Canis familiaris similar to CDK5 reg... 50 0.010
14gb|AC135587.3| Homo sapiens 3 BAC RP11-309B5 (Roswell Park Cance... 44 0.63
15ref|XM_641493.1| Dictyostelium discoideum hypothetical protein (... 40 9.8
16ref|XM_467122.1| Oryza sativa (japonica cultivar-group), mRNA 40 9.8
17gb|BC073249.1| Xenopus laevis MGC80594 protein, mRNA (cDNA clone... 40 9.8
18ref|XM_608624.2| PREDICTED: Bos taurus similar to CDK5 regulator... 40 9.8
19ref|XM_663417.1| Cryptosporidium hominis TU502 glycosyl transfer... 40 9.8
20emb|CR392025.7| Zebrafish DNA sequence from clone CH211-248P17 i... 40 9.8
21gb|BC114871.1| Bos taurus cDNA clone IMAGE:8185602, partial cds 40 9.8
22emb|AL672176.10| Zebrafish DNA sequence from clone BUSM1-12F11 i... 40 9.8
23gb|AC087417.27| Mus musculus strain C57BL/6J chromosome 2 clone ... 40 9.8
24dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.8
25dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.8
26emb|AL935130.10| Mouse DNA sequence from clone RP23-452B16 on ch... 40 9.8
27dbj|BA000022.2| Synechocystis sp. PCC 6803 DNA, complete genome 40 9.8
28dbj|AP005006.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.8
29dbj|AP003728.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.8
30dbj|AP003723.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.8
31dbj|AK070096.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 9.8
32gb|AC110171.29| Mus musculus chromosome 12, clone RP23-400A5, co... 40 9.8
33emb|AJ307662.1|OSA307662 Oryza sativa genomic DNA fragment, chro... 40 9.8 
>ref|XM_472569.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1881

 Score =  400 bits (202), Expect = e-108
 Identities = 331/374 (88%)
 Strand = Plus / Plus

                                                                        
Query: 33   aaacggttaaccttataaaagaatatcagttacctcaagttcacatatcacagttttatc 92
            |||| ||||||||| ||||| ||||||  || ||||| |||||||||||||| || || |
Sbjct: 1094 aaactgttaaccttgtaaaacaatatctattccctcaggttcacatatcacaattctacc 1153

                                                                        
Query: 93   ccagaccaggaacacctgctgctaggatgaagaaagtgcctagcattgaagtgaaaaaac 152
            ||||||||||||||||||||||||||||||| || || || ||| |||||||||| ||| 
Sbjct: 1154 ccagaccaggaacacctgctgctaggatgaaaaaggttccaagcgttgaagtgaagaaaa 1213

                                                                        
Query: 153  gaagtcgtgaattgacgtcagtttttgaagctttttcaccatacgaaggactgaaaggca 212
            | || ||||||||||| |||||||| ||  | |||||||| ||| ||||| || ||||||
Sbjct: 1214 ggagccgtgaattgacctcagttttcgagtcattttcaccctaccaaggaatggaaggca 1273

                                                                        
Query: 213  aagtggagaggatatggatcactgaaatagctactgatggtgttcatctggttggacata 272
            |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1274 aagtagagaggatatggatcactgaaatagctactgatggtgttcatttggttggacata 1333

                                                                        
Query: 273  ccaaagggtatatccaggttcttgtcattgctccagatagtatgctaggaacatcagcag 332
            ||||||| ||||||||||| |||||||||||||| ||||| ||| |||||||||||||||
Sbjct: 1334 ccaaaggatatatccaggtgcttgtcattgctcctgatagcatgttaggaacatcagcag 1393

                                                                        
Query: 333  atgcgaagatcacatctgtcggaagatggtctgtatttggtgaagtgatagaaggaacca 392
            ||| ||||||||||||||| || ||||||||||| ||||||||||||||||||||| || 
Sbjct: 1394 atgtgaagatcacatctgttgggagatggtctgtgtttggtgaagtgatagaaggatccg 1453

                          
Query: 393  ttgcagtaaaggaa 406
            ||| || |||||||
Sbjct: 1454 ttgtagcaaaggaa 1467
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>dbj|AK101879.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033070J24, full
            insert sequence
          Length = 1961

 Score =  400 bits (202), Expect = e-108
 Identities = 331/374 (88%)
 Strand = Plus / Plus

                                                                        
Query: 33   aaacggttaaccttataaaagaatatcagttacctcaagttcacatatcacagttttatc 92
            |||| ||||||||| ||||| ||||||  || ||||| |||||||||||||| || || |
Sbjct: 1079 aaactgttaaccttgtaaaacaatatctattccctcaggttcacatatcacaattctacc 1138

                                                                        
Query: 93   ccagaccaggaacacctgctgctaggatgaagaaagtgcctagcattgaagtgaaaaaac 152
            ||||||||||||||||||||||||||||||| || || || ||| |||||||||| ||| 
Sbjct: 1139 ccagaccaggaacacctgctgctaggatgaaaaaggttccaagcgttgaagtgaagaaaa 1198

                                                                        
Query: 153  gaagtcgtgaattgacgtcagtttttgaagctttttcaccatacgaaggactgaaaggca 212
            | || ||||||||||| |||||||| ||  | |||||||| ||| ||||| || ||||||
Sbjct: 1199 ggagccgtgaattgacctcagttttcgagtcattttcaccctaccaaggaatggaaggca 1258

                                                                        
Query: 213  aagtggagaggatatggatcactgaaatagctactgatggtgttcatctggttggacata 272
            |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1259 aagtagagaggatatggatcactgaaatagctactgatggtgttcatttggttggacata 1318

                                                                        
Query: 273  ccaaagggtatatccaggttcttgtcattgctccagatagtatgctaggaacatcagcag 332
            ||||||| ||||||||||| |||||||||||||| ||||| ||| |||||||||||||||
Sbjct: 1319 ccaaaggatatatccaggtgcttgtcattgctcctgatagcatgttaggaacatcagcag 1378

                                                                        
Query: 333  atgcgaagatcacatctgtcggaagatggtctgtatttggtgaagtgatagaaggaacca 392
            ||| ||||||||||||||| || ||||||||||| ||||||||||||||||||||| || 
Sbjct: 1379 atgtgaagatcacatctgttgggagatggtctgtgtttggtgaagtgatagaaggatccg 1438

                          
Query: 393  ttgcagtaaaggaa 406
            ||| || |||||||
Sbjct: 1439 ttgtagcaaaggaa 1452
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>gb|AY105923.1| Zea mays PCO122658 mRNA sequence
          Length = 985

 Score =  196 bits (99), Expect = 7e-47
 Identities = 288/351 (82%)
 Strand = Plus / Plus

                                                                       
Query: 38  gttaaccttataaaagaatatcagttacctcaagttcacatatcacagttttatcccaga 97
           ||||||||  |||| |||||||| || |||||||| ||||| || ||||| || ||||||
Sbjct: 279 gttaacctcgtaaaggaatatcaattccctcaagtccacatttcgcagttctaccccaga 338

                                                                       
Query: 98  ccaggaacacctgctgctaggatgaagaaagtgcctagcattgaagtgaaaaaacgaagt 157
           ||||| || ||||||||||||||||||||||| || ||||  |||||||| || || || 
Sbjct: 339 ccagggacgcctgctgctaggatgaagaaagtaccaagcaacgaagtgaagaagcggagc 398

                                                                       
Query: 158 cgtgaattgacgtcagtttttgaagctttttcaccatacgaaggactgaaaggcaaagtg 217
           ||||||||||| ||||| || ||| | ||||| |||||| ||||| || |||||||||| 
Sbjct: 399 cgtgaattgacttcagtcttcgaatcgttttcgccataccaaggaatggaaggcaaagta 458

                                                                       
Query: 218 gagaggatatggatcactgaaatagctactgatggtgttcatctggttggacataccaaa 277
           |||| ||| |||||||| || || ||  | || |||||||| ||||| ||||||||||| 
Sbjct: 459 gagaagatctggatcaccgagattgcgtccgacggtgttcacctggtcggacataccaag 518

                                                                       
Query: 278 gggtatatccaggttcttgtcattgctccagatagtatgctaggaacatcagcagatgcg 337
           || || |||||||| || || | |||||| ||||| ||| | ||||| || || || |||
Sbjct: 519 ggatacatccaggtgctggtaactgctcctgatagcatgttgggaacgtccgcggacgcg 578

                                                              
Query: 338 aagatcacatctgtcggaagatggtctgtatttggtgaagtgatagaagga 388
           |||||||| ||||||||| ||||||| || || |||| |||| ||||||||
Sbjct: 579 aagatcacgtctgtcggacgatggtccgtcttcggtgtagtggtagaagga 629
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>emb|AL606706.3|OSJN00063 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0086G13,
             complete sequence
          Length = 127952

 Score =  184 bits (93), Expect = 3e-43
 Identities = 132/145 (91%)
 Strand = Plus / Minus

                                                                         
Query: 262   ggttggacataccaaagggtatatccaggttcttgtcattgctccagatagtatgctagg 321
             |||||||||||||||||| ||||||||||| |||||||||||||| ||||| ||| ||||
Sbjct: 35331 ggttggacataccaaaggatatatccaggtgcttgtcattgctcctgatagcatgttagg 35272

                                                                         
Query: 322   aacatcagcagatgcgaagatcacatctgtcggaagatggtctgtatttggtgaagtgat 381
             |||||||||||||| ||||||||||||||| || ||||||||||| ||||||||||||||
Sbjct: 35271 aacatcagcagatgtgaagatcacatctgttgggagatggtctgtgtttggtgaagtgat 35212

                                      
Query: 382   agaaggaaccattgcagtaaaggaa 406
             ||||||| || ||| || |||||||
Sbjct: 35211 agaaggatccgttgtagcaaaggaa 35187



 Score =  168 bits (85), Expect = 2e-38
 Identities = 145/165 (87%)
 Strand = Plus / Minus

                                                                         
Query: 100   aggaacacctgctgctaggatgaagaaagtgcctagcattgaagtgaaaaaacgaagtcg 159
             |||||||||||||||||||||||| || || || ||| |||||||||| ||| | || ||
Sbjct: 35600 aggaacacctgctgctaggatgaaaaaggttccaagcgttgaagtgaagaaaaggagccg 35541

                                                                         
Query: 160   tgaattgacgtcagtttttgaagctttttcaccatacgaaggactgaaaggcaaagtgga 219
             ||||||||| |||||||| ||  | |||||||| ||| ||||| || |||||||||| ||
Sbjct: 35540 tgaattgacctcagttttcgagtcattttcaccctaccaaggaatggaaggcaaagtaga 35481

                                                          
Query: 220   gaggatatggatcactgaaatagctactgatggtgttcatctggt 264
             |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 35480 gaggatatggatcactgaaatagctactgatggtgttcatttggt 35436



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 60/70 (85%)
 Strand = Plus / Minus

                                                                         
Query: 33    aaacggttaaccttataaaagaatatcagttacctcaagttcacatatcacagttttatc 92
             |||| ||||||||| ||||| ||||||  || ||||| |||||||||||||| || || |
Sbjct: 35759 aaactgttaaccttgtaaaacaatatctattccctcaggttcacatatcacaattctacc 35700

                       
Query: 93    ccagaccagg 102
             ||||||||||
Sbjct: 35699 ccagaccagg 35690
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>emb|AL606626.3|OSJN00050 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0088K19,
              complete sequence
          Length = 156002

 Score =  184 bits (93), Expect = 3e-43
 Identities = 132/145 (91%)
 Strand = Plus / Minus

                                                                          
Query: 262    ggttggacataccaaagggtatatccaggttcttgtcattgctccagatagtatgctagg 321
              |||||||||||||||||| ||||||||||| |||||||||||||| ||||| ||| ||||
Sbjct: 122878 ggttggacataccaaaggatatatccaggtgcttgtcattgctcctgatagcatgttagg 122819

                                                                          
Query: 322    aacatcagcagatgcgaagatcacatctgtcggaagatggtctgtatttggtgaagtgat 381
              |||||||||||||| ||||||||||||||| || ||||||||||| ||||||||||||||
Sbjct: 122818 aacatcagcagatgtgaagatcacatctgttgggagatggtctgtgtttggtgaagtgat 122759

                                       
Query: 382    agaaggaaccattgcagtaaaggaa 406
              ||||||| || ||| || |||||||
Sbjct: 122758 agaaggatccgttgtagcaaaggaa 122734



 Score =  168 bits (85), Expect = 2e-38
 Identities = 145/165 (87%)
 Strand = Plus / Minus

                                                                          
Query: 100    aggaacacctgctgctaggatgaagaaagtgcctagcattgaagtgaaaaaacgaagtcg 159
              |||||||||||||||||||||||| || || || ||| |||||||||| ||| | || ||
Sbjct: 123147 aggaacacctgctgctaggatgaaaaaggttccaagcgttgaagtgaagaaaaggagccg 123088

                                                                          
Query: 160    tgaattgacgtcagtttttgaagctttttcaccatacgaaggactgaaaggcaaagtgga 219
              ||||||||| |||||||| ||  | |||||||| ||| ||||| || |||||||||| ||
Sbjct: 123087 tgaattgacctcagttttcgagtcattttcaccctaccaaggaatggaaggcaaagtaga 123028

                                                           
Query: 220    gaggatatggatcactgaaatagctactgatggtgttcatctggt 264
              |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 123027 gaggatatggatcactgaaatagctactgatggtgttcatttggt 122983



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 60/70 (85%)
 Strand = Plus / Minus

                                                                          
Query: 33     aaacggttaaccttataaaagaatatcagttacctcaagttcacatatcacagttttatc 92
              |||| ||||||||| ||||| ||||||  || ||||| |||||||||||||| || || |
Sbjct: 123306 aaactgttaaccttgtaaaacaatatctattccctcaggttcacatatcacaattctacc 123247

                        
Query: 93     ccagaccagg 102
              ||||||||||
Sbjct: 123246 ccagaccagg 123237
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  184 bits (93), Expect = 3e-43
 Identities = 132/145 (91%)
 Strand = Plus / Minus

                                                                            
Query: 262      ggttggacataccaaagggtatatccaggttcttgtcattgctccagatagtatgctagg 321
                |||||||||||||||||| ||||||||||| |||||||||||||| ||||| ||| ||||
Sbjct: 21600789 ggttggacataccaaaggatatatccaggtgcttgtcattgctcctgatagcatgttagg 21600730

                                                                            
Query: 322      aacatcagcagatgcgaagatcacatctgtcggaagatggtctgtatttggtgaagtgat 381
                |||||||||||||| ||||||||||||||| || ||||||||||| ||||||||||||||
Sbjct: 21600729 aacatcagcagatgtgaagatcacatctgttgggagatggtctgtgtttggtgaagtgat 21600670

                                         
Query: 382      agaaggaaccattgcagtaaaggaa 406
                ||||||| || ||| || |||||||
Sbjct: 21600669 agaaggatccgttgtagcaaaggaa 21600645



 Score =  168 bits (85), Expect = 2e-38
 Identities = 145/165 (87%)
 Strand = Plus / Minus

                                                                            
Query: 100      aggaacacctgctgctaggatgaagaaagtgcctagcattgaagtgaaaaaacgaagtcg 159
                |||||||||||||||||||||||| || || || ||| |||||||||| ||| | || ||
Sbjct: 21601058 aggaacacctgctgctaggatgaaaaaggttccaagcgttgaagtgaagaaaaggagccg 21600999

                                                                            
Query: 160      tgaattgacgtcagtttttgaagctttttcaccatacgaaggactgaaaggcaaagtgga 219
                ||||||||| |||||||| ||  | |||||||| ||| ||||| || |||||||||| ||
Sbjct: 21600998 tgaattgacctcagttttcgagtcattttcaccctaccaaggaatggaaggcaaagtaga 21600939

                                                             
Query: 220      gaggatatggatcactgaaatagctactgatggtgttcatctggt 264
                |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 21600938 gaggatatggatcactgaaatagctactgatggtgttcatttggt 21600894



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 60/70 (85%)
 Strand = Plus / Minus

                                                                            
Query: 33       aaacggttaaccttataaaagaatatcagttacctcaagttcacatatcacagttttatc 92
                |||| ||||||||| ||||| ||||||  || ||||| |||||||||||||| || || |
Sbjct: 21601217 aaactgttaaccttgtaaaacaatatctattccctcaggttcacatatcacaattctacc 21601158

                          
Query: 93       ccagaccagg 102
                ||||||||||
Sbjct: 21601157 ccagaccagg 21601148
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>ref|NM_105867.2| Arabidopsis thaliana catalytic/ iron ion binding AT1G72090 mRNA,
            complete cds
          Length = 1976

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 133/164 (81%)
 Strand = Plus / Plus

                                                                        
Query: 218  gagaggatatggatcactgaaatagctactgatggtgttcatctggttggacataccaaa 277
            |||||||||||||| |||||| |||||||||||||  ||||| ||||||||||||| || 
Sbjct: 1339 gagaggatatggataactgaagtagctactgatggaattcatttggttggacatacgaag 1398

                                                                        
Query: 278  gggtatatccaggttcttgtcattgctccagatagtatgctaggaacatcagcagatgcg 337
            || ||| | |||||  | || | ||  ||||| |||||||| || || |||||    |||
Sbjct: 1399 ggatatgtacaggtcttagttactggaccagaaagtatgcttgggacttcagctatggcg 1458

                                                        
Query: 338  aagatcacatctgtcggaagatggtctgtatttggtgaagtgat 381
            | ||| |||||||| || |||||||| |||||||| ||||||||
Sbjct: 1459 aggataacatctgtggggagatggtcagtatttggggaagtgat 1502
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>gb|AF367274.1|AF367274 Arabidopsis thaliana At1g72090/F28P5_4 mRNA, complete cds
          Length = 1977

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 133/164 (81%)
 Strand = Plus / Plus

                                                                        
Query: 218  gagaggatatggatcactgaaatagctactgatggtgttcatctggttggacataccaaa 277
            |||||||||||||| |||||| |||||||||||||  ||||| ||||||||||||| || 
Sbjct: 1339 gagaggatatggataactgaagtagctactgatggaattcatttggttggacatacgaag 1398

                                                                        
Query: 278  gggtatatccaggttcttgtcattgctccagatagtatgctaggaacatcagcagatgcg 337
            || ||| | |||||  | || | ||  ||||| |||||||| || || |||||    |||
Sbjct: 1399 ggatatgtacaggtcttagttactggaccagaaagtatgcttgggacttcagctatggcg 1458

                                                        
Query: 338  aagatcacatctgtcggaagatggtctgtatttggtgaagtgat 381
            | ||| |||||||| || |||||||| |||||||| ||||||||
Sbjct: 1459 aggataacatctgtggggagatggtcagtatttggggaagtgat 1502
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>gb|BT002712.1| Arabidopsis thaliana At1g72090/F28P5_4 gene, complete cds
          Length = 1806

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 133/164 (81%)
 Strand = Plus / Plus

                                                                        
Query: 218  gagaggatatggatcactgaaatagctactgatggtgttcatctggttggacataccaaa 277
            |||||||||||||| |||||| |||||||||||||  ||||| ||||||||||||| || 
Sbjct: 1297 gagaggatatggataactgaagtagctactgatggaattcatttggttggacatacgaag 1356

                                                                        
Query: 278  gggtatatccaggttcttgtcattgctccagatagtatgctaggaacatcagcagatgcg 337
            || ||| | |||||  | || | ||  ||||| |||||||| || || |||||    |||
Sbjct: 1357 ggatatgtacaggtcttagttactggaccagaaagtatgcttgggacttcagctatggcg 1416

                                                        
Query: 338  aagatcacatctgtcggaagatggtctgtatttggtgaagtgat 381
            | ||| |||||||| || |||||||| |||||||| ||||||||
Sbjct: 1417 aggataacatctgtggggagatggtcagtatttggggaagtgat 1460
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>gb|BT013138.1| Lycopersicon esculentum clone 114440F, mRNA sequence
          Length = 2084

 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 83/100 (83%)
 Strand = Plus / Plus

                                                                        
Query: 66   ctcaagttcacatatcacagttttatcccagaccaggaacacctgctgctaggatgaaga 125
            |||||||||| ||||||||||| ||||| || || || || |||||||| ||||||||||
Sbjct: 1167 ctcaagttcatatatcacagttctatcctaggcctggcactcctgctgcaaggatgaaga 1226

                                                    
Query: 126  aagtgcctagcattgaagtgaaaaaacgaagtcgtgaatt 165
            | || ||||| | ||  |||||  |||| |||||||||||
Sbjct: 1227 aggttcctagtaatgtggtgaagcaacgtagtcgtgaatt 1266



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 55/64 (85%)
 Strand = Plus / Plus

                                                                        
Query: 207  aaggcaaagtggagaggatatggatcactgaaatagctactgatggtgttcatctggttg 266
            |||| ||||| |||||||||||||| |||||  ||||| | ||||| |||||| ||||||
Sbjct: 1308 aaggaaaagtagagaggatatggattactgacgtagcttcagatggggttcatttggttg 1367

                
Query: 267  gaca 270
            ||||
Sbjct: 1368 gaca 1371
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>gb|AC069273.4|AC069273 Arabidopsis thaliana chromosome 1 BAC F28P5 genomic sequence, complete
             sequence
          Length = 38629

 Score = 54.0 bits (27), Expect = 7e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                                
Query: 218   gagaggatatggatcactgaaatagctactgatgg 252
             |||||||||||||| |||||| |||||||||||||
Sbjct: 15251 gagaggatatggataactgaagtagctactgatgg 15217



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                        
Query: 60    agttacctcaagttcacatatcacagttttatcccagaccagg 102
             |||| ||||||||||| || || |||||||| |||||||||||
Sbjct: 15503 agtttcctcaagttcatatttctcagttttaccccagaccagg 15461
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>ref|XM_545362.2| PREDICTED: Canis familiaris similar to CDK5 regulatory subunit
            associated protein 1-like 1, transcript variant 1
            (LOC488240), mRNA
          Length = 2054

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                         
Query: 83   cagttttatcccagaccaggaacacctgc 111
            ||||||||||||||||||||||| |||||
Sbjct: 1174 cagttttatcccagaccaggaactcctgc 1202
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>ref|XM_844340.1| PREDICTED: Canis familiaris similar to CDK5 regulatory subunit
            associated protein 1-like 1, transcript variant 3
            (LOC488240), mRNA
          Length = 2117

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                         
Query: 83   cagttttatcccagaccaggaacacctgc 111
            ||||||||||||||||||||||| |||||
Sbjct: 1174 cagttttatcccagaccaggaactcctgc 1202
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>gb|AC135587.3| Homo sapiens 3 BAC RP11-309B5 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 71577

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 269   cataccaaagggtatatccagg 290
             ||||||||||||||||||||||
Sbjct: 12392 cataccaaagggtatatccagg 12371
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>ref|XM_641493.1| Dictyostelium discoideum hypothetical protein (DDB0201969), partial
            mRNA
          Length = 2580

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 172  agtttttgaagctttttcaccata 195
            ||||||||||| ||||||||||||
Sbjct: 1362 agtttttgaagttttttcaccata 1339
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>ref|XM_467122.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2701

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 405  aagcagcgcttcaacaaaattctg 428
            |||||| |||||||||||||||||
Sbjct: 1860 aagcagagcttcaacaaaattctg 1837
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>gb|BC073249.1| Xenopus laevis MGC80594 protein, mRNA (cDNA clone MGC:80594
           IMAGE:5505839), complete cds
          Length = 1294

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 390 ccattgcagtaaaggaagcagcgc 413
           |||||||| |||||||||||||||
Sbjct: 413 ccattgcaataaaggaagcagcgc 390
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>ref|XM_608624.2| PREDICTED: Bos taurus similar to CDK5 regulatory subunit associated
           protein 1-like 1 (LOC530159), mRNA
          Length = 792

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 83  cagttttatcccagaccaggaacacctgctgc 114
           |||||||| || ||||||||||| ||||||||
Sbjct: 307 cagttttacccaagaccaggaactcctgctgc 338
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>ref|XM_663417.1| Cryptosporidium hominis TU502 glycosyl transferase (Chro.70211)
           partial mRNA
          Length = 1233

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 170 tcagtttttgaagctttttc 189
           ||||||||||||||||||||
Sbjct: 821 tcagtttttgaagctttttc 802
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>emb|CR392025.7| Zebrafish DNA sequence from clone CH211-248P17 in linkage group 17,
             complete sequence
          Length = 158863

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 111   ctgctaggatgaagaaagtg 130
             ||||||||||||||||||||
Sbjct: 54636 ctgctaggatgaagaaagtg 54617
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>gb|BC114871.1| Bos taurus cDNA clone IMAGE:8185602, partial cds
          Length = 1380

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 83   cagttttatcccagaccaggaacacctgctgc 114
            |||||||| || ||||||||||| ||||||||
Sbjct: 1305 cagttttacccaagaccaggaactcctgctgc 1336
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>emb|AL672176.10| Zebrafish DNA sequence from clone BUSM1-12F11 in linkage group 19
             Contains the 3' part of the rxrb gene for retinoid x
             receptor beta, a novel gene, the col11a2 gene for collagen
             type XI alpha-2,  the fabgl gene for FabG
             (beta-ketoacyl-[acyl-carrier-protein] reductase, E. coli)
             like, and the 3' part of the brd2 gene for
             bromodomain-containing protein 2, complete sequence
          Length = 100037

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 79    atcacagttttatcccagac 98
             ||||||||||||||||||||
Sbjct: 40280 atcacagttttatcccagac 40299
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>gb|AC087417.27| Mus musculus strain C57BL/6J chromosome 2 clone rp23-382b13, complete
             sequence
          Length = 225248

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 356   agatggtctgtatttggtga 375
             ||||||||||||||||||||
Sbjct: 96905 agatggtctgtatttggtga 96886
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 405      aagcagcgcttcaacaaaattctg 428
                |||||| |||||||||||||||||
Sbjct: 27875830 aagcagagcttcaacaaaattctg 27875807
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 405      aagcagcgcttcaacaaaattctg 428
                |||||| |||||||||||||||||
Sbjct: 26532843 aagcagagcttcaacaaaattctg 26532820
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>emb|AL935130.10| Mouse DNA sequence from clone RP23-452B16 on chromosome 2, complete
             sequence
          Length = 149810

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 356   agatggtctgtatttggtga 375
             ||||||||||||||||||||
Sbjct: 23939 agatggtctgtatttggtga 23958
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>dbj|BA000022.2| Synechocystis sp. PCC 6803 DNA, complete genome
          Length = 3573470

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 207     aaggcaaagtggagaggata 226
               ||||||||||||||||||||
Sbjct: 1407277 aaggcaaagtggagaggata 1407258
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>dbj|AP005006.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0519E06
          Length = 170634

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 405   aagcagcgcttcaacaaaattctg 428
             |||||| |||||||||||||||||
Sbjct: 75224 aagcagagcttcaacaaaattctg 75201
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>dbj|AP003728.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0710B08
          Length = 186991

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 405    aagcagcgcttcaacaaaattctg 428
              |||||| |||||||||||||||||
Sbjct: 178339 aagcagagcttcaacaaaattctg 178316
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>dbj|AP003723.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0003H08
          Length = 142068

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 405   aagcagcgcttcaacaaaattctg 428
             |||||| |||||||||||||||||
Sbjct: 29753 aagcagagcttcaacaaaattctg 29730
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>dbj|AK070096.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023041N04, full
            insert sequence
          Length = 2720

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 405  aagcagcgcttcaacaaaattctg 428
            |||||| |||||||||||||||||
Sbjct: 1879 aagcagagcttcaacaaaattctg 1856
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>gb|AC110171.29| Mus musculus chromosome 12, clone RP23-400A5, complete sequence
          Length = 188590

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 652   agggaaaacaagtgaaagtg 671
             ||||||||||||||||||||
Sbjct: 74498 agggaaaacaagtgaaagtg 74479
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>emb|AJ307662.1|OSA307662 Oryza sativa genomic DNA fragment, chromosome 2
          Length = 339972

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 405    aagcagcgcttcaacaaaattctg 428
              |||||| |||||||||||||||||
Sbjct: 238497 aagcagagcttcaacaaaattctg 238474


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,923,823
Number of Sequences: 3902068
Number of extensions: 5923823
Number of successful extensions: 100564
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 100389
Number of HSP's gapped (non-prelim): 174
length of query: 716
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 693
effective length of database: 17,143,297,704
effective search space: 11880305308872
effective search space used: 11880305308872
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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