ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags39d21
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_467229.1| Oryza sativa (japonica cultivar-group), mRNA 400 e-108
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 400 e-108
3dbj|AP004096.3| Oryza sativa (japonica cultivar-group) genomic D... 400 e-108
4dbj|AK072634.1| Oryza sativa (japonica cultivar-group) cDNA clon... 400 e-108
5dbj|AK063776.1| Oryza sativa (japonica cultivar-group) cDNA clon... 137 3e-29
6dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 129 8e-27
7dbj|AP003951.3| Oryza sativa (japonica cultivar-group) genomic D... 129 8e-27
8gb|AC130604.4| Oryza sativa (japonica cultivar-group) chromosome... 46 0.092
9dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.092
10ref|XM_365502.1| Magnaporthe grisea 70-15 hypothetical protein (... 44 0.36
11emb|AJ579366.1|CRE579366 Chlamydomonas reinhardtii mRNA for aspa... 44 0.36
12ref|NM_197733.1| Oryza sativa (japonica cultivar-group) hypothet... 42 1.4
13ref|XM_323339.1| Neurospora crassa OR74A hypothetical protein (N... 42 1.4
14ref|XM_952543.1| Neurospora crassa OR74A hypothetical protein (N... 42 1.4
15emb|AL139794.3|LMFLCHR4B Leishmania major Friedlin chromosome 4,... 42 1.4
16emb|BX295540.1|NC49D12 Neurospora crassa DNA linkage group VI Co... 42 1.4
17gb|AC079874.21| Oryza sativa chromosome 10 BAC OSJNBa0042H09 gen... 42 1.4
18dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
19dbj|AK070091.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.4
20gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.4
21gb|AC121363.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.6
22ref|NM_001013024.1| Mus musculus ubiquitin specific peptidase 13... 40 5.6
23gb|AC108501.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.6
24gb|BC090999.1| Mus musculus ubiquitin specific peptidase 13 (iso... 40 5.6
25gb|AC111140.11| Mus musculus chromosome 3, clone RP23-369L16, co... 40 5.6
26gb|AC011495.8| Homo sapiens chromosome 19 clone CTB-33G10, compl... 40 5.6
27dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, co... 40 5.6
28tpg|BK005031.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-gr... 40 5.6
29gb|AC010619.7| Homo sapiens chromosome 19 clone CTD-3148I10, com... 40 5.6
30dbj|AK135141.1| Mus musculus 10 days neonate cerebellum cDNA, RI... 40 5.6
31gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete g... 40 5.6
32gb|AC154531.2| Mus musculus BAC clone RP23-468B10 from chromosom... 40 5.6
33ref|XM_392550.2| PREDICTED: Apis mellifera similar to ENSANGP000... 40 5.6
34dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
35dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
36dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
37dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 5.6
38gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 5.6
39dbj|AP001539.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
40dbj|AP005884.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
41dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 5.6
42dbj|AP003517.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
43dbj|AP005789.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
44dbj|AP005831.5| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
45dbj|AP005248.4| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
46dbj|AB119059.1| Nannochloris bacillaris NbftsZ2 gene for plastid... 40 5.6
47dbj|AK121901.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.6
48dbj|AK119644.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.6
49dbj|AK106282.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.6
50emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 40 5.6
51dbj|AK065569.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.6 
>ref|XM_467229.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 980

 Score =  400 bits (202), Expect = e-108
 Identities = 286/315 (90%)
 Strand = Plus / Plus

                                                                       
Query: 107 gtggtccgagcggcgtggacgcggcggtcgcgcggcgagttggacaagagcccgaaccgc 166
           ||||| || |||||||||||||||||||||||    |||  |||  |||| || ||||||
Sbjct: 197 gtggtgcgcgcggcgtggacgcggcggtcgcggaaggaggcggaggagaggcccaaccgc 256

                                                                       
Query: 167 aagtcgtggaagcagcgcacggacatgnacatgcgcccgttcctgctcaacgtcttcttc 226
           ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 257 aagtcgtggaagcagcgcacggacatgtacatgcggccgttcctgctcaacgtcttcttc 316

                                                                       
Query: 227 tccaagcgcttcgnccacgccaaggtcatgcaccggggcaccagcaaggttatcgccgtc 286
           ||||||||||||| ||||||||||||| ||||| |||||||||||||||| ||| |||||
Sbjct: 317 tccaagcgcttcgtccacgccaaggtcgtgcacaggggcaccagcaaggtcatctccgtc 376

                                                                       
Query: 287 gccaccaccaacgccaaggacctcaggaccacgctgccgtacctcatagacgacaacgcc 346
           |||| ||||||||||||||||||||||||||||||||| | |||| | ||||||||||||
Sbjct: 377 gccagcaccaacgccaaggacctcaggaccacgctgccctccctcgtcgacgacaacgcc 436

                                                                       
Query: 347 tgcaggaccatcggncgtctcatagccgagaggtccatggacgccgacgtcttcgccatg 406
           |||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 437 tgcaggaccatcggccgcctcatcgccgagaggtccatggacgccgacgtcttcgccatg 496

                          
Query: 407 gcgtacgagcccaag 421
            | ||||||||||||
Sbjct: 497 tcctacgagcccaag 511
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  400 bits (202), Expect = e-108
 Identities = 286/315 (90%)
 Strand = Plus / Minus

                                                                            
Query: 107      gtggtccgagcggcgtggacgcggcggtcgcgcggcgagttggacaagagcccgaaccgc 166
                ||||| || |||||||||||||||||||||||    |||  |||  |||| || ||||||
Sbjct: 28309976 gtggtgcgcgcggcgtggacgcggcggtcgcggaaggaggcggaggagaggcccaaccgc 28309917

                                                                            
Query: 167      aagtcgtggaagcagcgcacggacatgnacatgcgcccgttcctgctcaacgtcttcttc 226
                ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 28309916 aagtcgtggaagcagcgcacggacatgtacatgcggccgttcctgctcaacgtcttcttc 28309857

                                                                            
Query: 227      tccaagcgcttcgnccacgccaaggtcatgcaccggggcaccagcaaggttatcgccgtc 286
                ||||||||||||| ||||||||||||| ||||| |||||||||||||||| ||| |||||
Sbjct: 28309856 tccaagcgcttcgtccacgccaaggtcgtgcacaggggcaccagcaaggtcatctccgtc 28309797

                                                                            
Query: 287      gccaccaccaacgccaaggacctcaggaccacgctgccgtacctcatagacgacaacgcc 346
                |||| ||||||||||||||||||||||||||||||||| | |||| | ||||||||||||
Sbjct: 28309796 gccagcaccaacgccaaggacctcaggaccacgctgccctccctcgtcgacgacaacgcc 28309737

                                                                            
Query: 347      tgcaggaccatcggncgtctcatagccgagaggtccatggacgccgacgtcttcgccatg 406
                |||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 28309736 tgcaggaccatcggccgcctcatcgccgagaggtccatggacgccgacgtcttcgccatg 28309677

                               
Query: 407      gcgtacgagcccaag 421
                 | ||||||||||||
Sbjct: 28309676 tcctacgagcccaag 28309662
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>dbj|AP004096.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1743_B12
          Length = 175645

 Score =  400 bits (202), Expect = e-108
 Identities = 286/315 (90%)
 Strand = Plus / Minus

                                                                          
Query: 107    gtggtccgagcggcgtggacgcggcggtcgcgcggcgagttggacaagagcccgaaccgc 166
              ||||| || |||||||||||||||||||||||    |||  |||  |||| || ||||||
Sbjct: 101733 gtggtgcgcgcggcgtggacgcggcggtcgcggaaggaggcggaggagaggcccaaccgc 101674

                                                                          
Query: 167    aagtcgtggaagcagcgcacggacatgnacatgcgcccgttcctgctcaacgtcttcttc 226
              ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 101673 aagtcgtggaagcagcgcacggacatgtacatgcggccgttcctgctcaacgtcttcttc 101614

                                                                          
Query: 227    tccaagcgcttcgnccacgccaaggtcatgcaccggggcaccagcaaggttatcgccgtc 286
              ||||||||||||| ||||||||||||| ||||| |||||||||||||||| ||| |||||
Sbjct: 101613 tccaagcgcttcgtccacgccaaggtcgtgcacaggggcaccagcaaggtcatctccgtc 101554

                                                                          
Query: 287    gccaccaccaacgccaaggacctcaggaccacgctgccgtacctcatagacgacaacgcc 346
              |||| ||||||||||||||||||||||||||||||||| | |||| | ||||||||||||
Sbjct: 101553 gccagcaccaacgccaaggacctcaggaccacgctgccctccctcgtcgacgacaacgcc 101494

                                                                          
Query: 347    tgcaggaccatcggncgtctcatagccgagaggtccatggacgccgacgtcttcgccatg 406
              |||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 101493 tgcaggaccatcggccgcctcatcgccgagaggtccatggacgccgacgtcttcgccatg 101434

                             
Query: 407    gcgtacgagcccaag 421
               | ||||||||||||
Sbjct: 101433 tcctacgagcccaag 101419
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>dbj|AK072634.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023132I06, full
           insert sequence
          Length = 979

 Score =  400 bits (202), Expect = e-108
 Identities = 286/315 (90%)
 Strand = Plus / Plus

                                                                       
Query: 107 gtggtccgagcggcgtggacgcggcggtcgcgcggcgagttggacaagagcccgaaccgc 166
           ||||| || |||||||||||||||||||||||    |||  |||  |||| || ||||||
Sbjct: 196 gtggtgcgcgcggcgtggacgcggcggtcgcggaaggaggcggaggagaggcccaaccgc 255

                                                                       
Query: 167 aagtcgtggaagcagcgcacggacatgnacatgcgcccgttcctgctcaacgtcttcttc 226
           ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 256 aagtcgtggaagcagcgcacggacatgtacatgcggccgttcctgctcaacgtcttcttc 315

                                                                       
Query: 227 tccaagcgcttcgnccacgccaaggtcatgcaccggggcaccagcaaggttatcgccgtc 286
           ||||||||||||| ||||||||||||| ||||| |||||||||||||||| ||| |||||
Sbjct: 316 tccaagcgcttcgtccacgccaaggtcgtgcacaggggcaccagcaaggtcatctccgtc 375

                                                                       
Query: 287 gccaccaccaacgccaaggacctcaggaccacgctgccgtacctcatagacgacaacgcc 346
           |||| ||||||||||||||||||||||||||||||||| | |||| | ||||||||||||
Sbjct: 376 gccagcaccaacgccaaggacctcaggaccacgctgccctccctcgtcgacgacaacgcc 435

                                                                       
Query: 347 tgcaggaccatcggncgtctcatagccgagaggtccatggacgccgacgtcttcgccatg 406
           |||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 436 tgcaggaccatcggccgcctcatcgccgagaggtccatggacgccgacgtcttcgccatg 495

                          
Query: 407 gcgtacgagcccaag 421
            | ||||||||||||
Sbjct: 496 tcctacgagcccaag 510
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>dbj|AK063776.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-121-D02, full
           insert sequence
          Length = 496

 Score =  137 bits (69), Expect = 3e-29
 Identities = 95/104 (91%)
 Strand = Plus / Plus

                                                                       
Query: 318 cgctgccgtacctcatagacgacaacgcctgcaggaccatcggncgtctcatagccgaga 377
           ||||||| | |||| | |||||||||||||||||||||||||| || ||||| |||||||
Sbjct: 1   cgctgccctccctcgtcgacgacaacgcctgcaggaccatcggccgcctcatcgccgaga 60

                                                       
Query: 378 ggtccatggacgccgacgtcttcgccatggcgtacgagcccaag 421
           ||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 61  ggtccatggacgccgacgtcttcgccatgtcctacgagcccaag 104
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  129 bits (65), Expect = 8e-27
 Identities = 99/111 (89%)
 Strand = Plus / Minus

                                                                            
Query: 161      aaccgcaagtcgtggaagcagcgcacggacatgnacatgcgcccgttcctgctcaacgtc 220
                ||||||||||| || |||||| ||| ||||||| ||||||| ||||| ||||||||||||
Sbjct: 17709142 aaccgcaagtcatgtaagcagtgcatggacatgtacatgcggccgtttctgctcaacgtc 17709083

                                                                   
Query: 221      ttcttctccaagcgcttcgnccacgccaaggtcatgcaccggggcaccagc 271
                |||||||||||||| |||| ||||||||||||  ||||| |||||||||||
Sbjct: 17709082 ttcttctccaagcgattcgtccacgccaaggttgtgcacaggggcaccagc 17709032



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                       
Query: 225      tctccaagcgcttcgnccacgcc 247
                ||||||||||||||| |||||||
Sbjct: 26127240 tctccaagcgcttcgtccacgcc 26127218
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>dbj|AP003951.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OJ1288_C01
          Length = 111223

 Score =  129 bits (65), Expect = 8e-27
 Identities = 99/111 (89%)
 Strand = Plus / Minus

                                                                         
Query: 161   aaccgcaagtcgtggaagcagcgcacggacatgnacatgcgcccgttcctgctcaacgtc 220
             ||||||||||| || |||||| ||| ||||||| ||||||| ||||| ||||||||||||
Sbjct: 87040 aaccgcaagtcatgtaagcagtgcatggacatgtacatgcggccgtttctgctcaacgtc 86981

                                                                
Query: 221   ttcttctccaagcgcttcgnccacgccaaggtcatgcaccggggcaccagc 271
             |||||||||||||| |||| ||||||||||||  ||||| |||||||||||
Sbjct: 86980 ttcttctccaagcgattcgtccacgccaaggttgtgcacaggggcaccagc 86930
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>gb|AC130604.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1155G07,
              complete sequence
          Length = 146712

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 62     cgcctcgctctctcgccgccgcc 84
              |||||||||||||||||||||||
Sbjct: 125205 cgcctcgctctctcgccgccgcc 125227
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 62       cgcctcgctctctcgccgccgcc 84
                |||||||||||||||||||||||
Sbjct: 25262364 cgcctcgctctctcgccgccgcc 25262386



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 258      accggggcaccagcaaggtt 277
                ||||||||||||||||||||
Sbjct: 18415108 accggggcaccagcaaggtt 18415089



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 59       ccgcgcctcgctctctcgccgccgcccg 86
                ||||||||||| ||| ||||||||||||
Sbjct: 16774288 ccgcgcctcgcgctcccgccgccgcccg 16774261
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>ref|XM_365502.1| Magnaporthe grisea 70-15 hypothetical protein (MG02204.4) partial
            mRNA
          Length = 1614

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 284  gtcgccaccaccaacgccaagg 305
            ||||||||||||||||||||||
Sbjct: 1322 gtcgccaccaccaacgccaagg 1301
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>emb|AJ579366.1|CRE579366 Chlamydomonas reinhardtii mRNA for aspartic proteinase (chlapsin
            gene)
          Length = 2443

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 72   tctcgccgccgcccgcgtccaa 93
            ||||||||||||||||||||||
Sbjct: 1743 tctcgccgccgcccgcgtccaa 1722
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>ref|NM_197733.1| Oryza sativa (japonica cultivar-group) hypothetical protein
           (OSJNBa0042H09.18), mRNA
          Length = 564

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 211 gctcaacgtcttcttctccaagcgcttcg 239
           |||| |||||||| |||||||||||||||
Sbjct: 267 gctcgacgtcttcatctccaagcgcttcg 295
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>ref|XM_323339.1| Neurospora crassa OR74A hypothetical protein (NCU04021.1) partial
            mRNA
          Length = 4935

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 67   cgctctctcgccgccgcccgc 87
            |||||||||||||||||||||
Sbjct: 4069 cgctctctcgccgccgcccgc 4089
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>ref|XM_952543.1| Neurospora crassa OR74A hypothetical protein (NCU04021.1) partial
            mRNA
          Length = 4935

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 67   cgctctctcgccgccgcccgc 87
            |||||||||||||||||||||
Sbjct: 4069 cgctctctcgccgccgcccgc 4089
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>emb|AL139794.3|LMFLCHR4B Leishmania major Friedlin chromosome 4, right end
          Length = 247462

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 64     cctcgctctctcgccgccgcc 84
              |||||||||||||||||||||
Sbjct: 168103 cctcgctctctcgccgccgcc 168083
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>emb|BX295540.1|NC49D12 Neurospora crassa DNA linkage group VI Cosmid contig 49D12
          Length = 95032

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 67    cgctctctcgccgccgcccgc 87
             |||||||||||||||||||||
Sbjct: 82028 cgctctctcgccgccgcccgc 82048
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>gb|AC079874.21| Oryza sativa chromosome 10 BAC OSJNBa0042H09 genomic sequence, complete
             sequence
          Length = 144191

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 211   gctcaacgtcttcttctccaagcgcttcg 239
             |||| |||||||| |||||||||||||||
Sbjct: 81612 gctcgacgtcttcatctccaagcgcttcg 81584
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 211      gctcaacgtcttcttctccaagcgcttcg 239
                |||| |||||||| |||||||||||||||
Sbjct: 21528445 gctcgacgtcttcatctccaagcgcttcg 21528473
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>dbj|AK070091.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023040K18, full
           insert sequence
          Length = 1003

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 211 gctcaacgtcttcttctccaagcgcttcg 239
           |||| |||||||| |||||||||||||||
Sbjct: 577 gctcgacgtcttcatctccaagcgcttcg 605
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 211      gctcaacgtcttcttctccaagcgcttcg 239
                |||| |||||||| |||||||||||||||
Sbjct: 21540108 gctcgacgtcttcatctccaagcgcttcg 21540136
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>gb|AC121363.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0036C12, complete sequence
          Length = 145517

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 59    ccgcgcctcgctctctcgccgccgcccg 86
             ||||||||||| ||| ||||||||||||
Sbjct: 98398 ccgcgcctcgcgctcccgccgccgcccg 98371
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>ref|NM_001013024.1| Mus musculus ubiquitin specific peptidase 13 (isopeptidase T-3)
           (Usp13), mRNA
          Length = 4704

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 122 tggacgcggcggtcgcgcgg 141
           ||||||||||||||||||||
Sbjct: 29  tggacgcggcggtcgcgcgg 10
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>gb|AC108501.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1354_D07,
             complete sequence
          Length = 156163

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 258   accggggcaccagcaaggtt 277
             ||||||||||||||||||||
Sbjct: 54945 accggggcaccagcaaggtt 54926
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>gb|BC090999.1| Mus musculus ubiquitin specific peptidase 13 (isopeptidase T-3),
           mRNA (cDNA clone MGC:107670 IMAGE:6754549), complete cds
          Length = 4704

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 122 tggacgcggcggtcgcgcgg 141
           ||||||||||||||||||||
Sbjct: 29  tggacgcggcggtcgcgcgg 10
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>gb|AC111140.11| Mus musculus chromosome 3, clone RP23-369L16, complete sequence
          Length = 236182

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 122    tggacgcggcggtcgcgcgg 141
              ||||||||||||||||||||
Sbjct: 120895 tggacgcggcggtcgcgcgg 120914
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>gb|AC011495.8| Homo sapiens chromosome 19 clone CTB-33G10, complete sequence
          Length = 209844

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 65    ctcgctctctcgccgccgcc 84
             ||||||||||||||||||||
Sbjct: 17082 ctcgctctctcgccgccgcc 17063
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>dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, complete genome
          Length = 5727534

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 44      cgcatccccttgtcaccgcg 63
               ||||||||||||||||||||
Sbjct: 4552171 cgcatccccttgtcaccgcg 4552190
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>tpg|BK005031.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) WRKY
            transcription factor 28 (WRKY28) gene, complete cds
          Length = 4123

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 225  tctccaagcgcttcgnccacgcc 247
            ||||||||||||||| |||||||
Sbjct: 3552 tctccaagcgcttcgtccacgcc 3574
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>gb|AC010619.7| Homo sapiens chromosome 19 clone CTD-3148I10, complete sequence
          Length = 179394

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 65     ctcgctctctcgccgccgcc 84
              ||||||||||||||||||||
Sbjct: 178440 ctcgctctctcgccgccgcc 178421
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>dbj|AK135141.1| Mus musculus 10 days neonate cerebellum cDNA, RIKEN full-length
           enriched library, clone:6530413E19 product:Ubiquitin
           carboxyl-terminal hydrolase 13 (EC 3.1.2.15) (Ubiquitin
           thiolesterase 13) (Ubiquitin-specific processing
           protease 13) (Deubiquitinating enzyme 13) (Isopeptidase
           T-3) (ISOT-3) homolog [Homo sapiens], full insert
           sequence
          Length = 2769

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 122 tggacgcggcggtcgcgcgg 141
           ||||||||||||||||||||
Sbjct: 85  tggacgcggcggtcgcgcgg 66
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>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome
          Length = 6260361

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 195     acatgcgcccgttcctgctcaacg 218
               |||||||| |||||||||||||||
Sbjct: 3232775 acatgcgctcgttcctgctcaacg 3232798
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>gb|AC154531.2| Mus musculus BAC clone RP23-468B10 from chromosome 14, complete sequence
          Length = 180565

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 250    ggtcatgcaccggggcaccagcaa 273
              |||||||||| |||||||||||||
Sbjct: 126199 ggtcatgcactggggcaccagcaa 126222
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>ref|XM_392550.2| PREDICTED: Apis mellifera similar to ENSANGP00000019435
           (LOC409020), mRNA
          Length = 8601

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 208 cctgctcaacgtcttcttct 227
           ||||||||||||||||||||
Sbjct: 519 cctgctcaacgtcttcttct 500
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 56      tcaccgcgcctcgctctctc 75
               ||||||||||||||||||||
Sbjct: 1288031 tcaccgcgcctcgctctctc 1288012
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 62       cgcctcgctctctcgccgccgccc 85
                ||||||||||||||||| ||||||
Sbjct: 13534026 cgcctcgctctctcgcccccgccc 13534049
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 65      ctcgctctctcgccgccgcc 84
               ||||||||||||||||||||
Sbjct: 7518724 ctcgctctctcgccgccgcc 7518743
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 73      ctcgccgccgcccgcgtcca 92
               ||||||||||||||||||||
Sbjct: 8818419 ctcgccgccgcccgcgtcca 8818400
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 73      ctcgccgccgcccgcgtcca 92
               ||||||||||||||||||||
Sbjct: 2210644 ctcgccgccgcccgcgtcca 2210663



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 113    cgagcggcgtggacgcggcg 132
              ||||||||||||||||||||
Sbjct: 210280 cgagcggcgtggacgcggcg 210261
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>dbj|AP001539.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
             clone:P0708G02
          Length = 168976

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 65    ctcgctctctcgccgccgcc 84
             ||||||||||||||||||||
Sbjct: 67516 ctcgctctctcgccgccgcc 67535
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>dbj|AP005884.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0598D02
          Length = 155238

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 56    tcaccgcgcctcgctctctc 75
             ||||||||||||||||||||
Sbjct: 59035 tcaccgcgcctcgctctctc 59016
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 118     ggcgtggacgcggcggtcgc 137
               ||||||||||||||||||||
Sbjct: 1264915 ggcgtggacgcggcggtcgc 1264896
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>dbj|AP003517.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0062J02
          Length = 151636

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 225    tctccaagcgcttcgnccacgcc 247
              ||||||||||||||| |||||||
Sbjct: 106485 tctccaagcgcttcgtccacgcc 106463
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>dbj|AP005789.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0563F09
          Length = 174905

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 56     tcaccgcgcctcgctctctc 75
              ||||||||||||||||||||
Sbjct: 118905 tcaccgcgcctcgctctctc 118886
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>dbj|AP005831.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:B1123E10
          Length = 134641

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 62     cgcctcgctctctcgccgccgccc 85
              ||||||||||||||||| ||||||
Sbjct: 113709 cgcctcgctctctcgcccccgccc 113732
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>dbj|AP005248.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
            clone:OSJNBa0084P08
          Length = 158656

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 62   cgcctcgctctctcgccgccgccc 85
            ||||||||||||||||| ||||||
Sbjct: 1645 cgcctcgctctctcgcccccgccc 1668
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>dbj|AB119059.1| Nannochloris bacillaris NbftsZ2 gene for plastid division protein
           FtsZ2, complete cds
          Length = 2196

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 286 cgccaccaccaacgccaaggacct 309
           ||||||||||||||||||| ||||
Sbjct: 510 cgccaccaccaacgccaagtacct 487
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>dbj|AK121901.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033105G24, full
           insert sequence
          Length = 1068

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 59  ccgcgcctcgctctctcgccgccgcccg 86
           ||||||||||| ||| ||||||||||||
Sbjct: 299 ccgcgcctcgcgctcccgccgccgcccg 326
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>dbj|AK119644.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-130-G04, full
           insert sequence
          Length = 1335

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 225 tctccaagcgcttcgnccacgcc 247
           ||||||||||||||| |||||||
Sbjct: 530 tctccaagcgcttcgtccacgcc 552
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>dbj|AK106282.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-101-A04, full
           insert sequence
          Length = 1413

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 225 tctccaagcgcttcgnccacgcc 247
           ||||||||||||||| |||||||
Sbjct: 608 tctccaagcgcttcgtccacgcc 630
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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 203     ccgttcctgctcaacgtcttcttc 226
               |||||||||||| |||||||||||
Sbjct: 4080284 ccgttcctgctcgacgtcttcttc 4080261



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 292     caccaacgccaaggacctca 311
               ||||||||||||||||||||
Sbjct: 2583933 caccaacgccaaggacctca 2583952
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>dbj|AK065569.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013026L08, full
           insert sequence
          Length = 1217

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 65  ctcgctctctcgccgccgcc 84
           ||||||||||||||||||||
Sbjct: 109 ctcgctctctcgccgccgcc 128


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,119,006
Number of Sequences: 3902068
Number of extensions: 2119006
Number of successful extensions: 44364
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43354
Number of HSP's gapped (non-prelim): 1010
length of query: 421
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 399
effective length of database: 17,147,199,772
effective search space: 6841732709028
effective search space used: 6841732709028
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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