>YJJI_ECOLI (P37342) Hypothetical protein yjjI|
          Length = 516

 Score = 32.3 bits (72), Expect = 0.98
 Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 6/40 (15%)
 Frame = +3

Query: 264 HPSSKPREVDP------ARLAEWKQLESAKDRQDAISIVT 365
           H   KPR V P      A  +EW +LE AKD  DA+S++T
Sbjct: 64  HAPYKPRYVLPDYARFLANGSEWLELEGAKDLDDALSLLT 103

>GLYA_HALSA (Q9HPY5) Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine|
           methylase) (SHMT)
          Length = 415

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 24/119 (20%)
 Frame = +3

Query: 231 YKKLCKHVKARHP-------SSKPREVDPARLAEWKQLESAKDRQDAISI-----VTGL- 371
           Y+ L +H  A  P       S+ PREV      EW+++++A D   A+ +     +TGL 
Sbjct: 154 YEALREHADAFEPDMIVSGFSAYPREV------EWERIQAAADAVGALHMADIAHITGLV 207

Query: 372 ----NPGSMIIGDYLIDPN-----SGSSDSFMGNSDWSDDSDSYTFPG--GGDIMFSEA 515
               +   + + D++         +G     M +  ++DD DS  FPG  GG +M + A
Sbjct: 208 AAGEHASPVGVADFVTGSTHKTIRAGRGGIVMCDEAFADDIDSAVFPGAQGGPLMHNIA 266

>CBLC_HUMAN (Q9ULV8) Signal transduction protein CBL-C (SH3-binding protein|
           CBL-C) (CBL-3) (RING finger protein 57)
          Length = 474

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +3

Query: 12  CLEQFKNAYVKEKPANEVSIAVAAASKKPKDVELACPICRGEVKGWTVV 158
           C E  K+  VK +P   +  +   A+ +  D +  CP CR E+KGW  V
Sbjct: 354 CAESNKD--VKIEPCGHLLCSCCLAAWQHSDSQ-TCPFCRCEIKGWEAV 399

>CHIX_STROI (Q05638) Exochitinase 1 precursor (EC 3.2.1.14)|
          Length = 597

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 6/106 (5%)
 Frame = -3

Query: 373 FKPVTMLIASCLSFALSSCFHSAKRAG----STSRGFDEGCLAFTCLQ-SFLYDPMNKQS 209
           F+P+ +LIA+ L+ + ++   SA RA     + + GF+ G   +TC   + +  P+   S
Sbjct: 4   FRPLAVLIAAALTLSGTTALSSAARAADADLARNGGFEAGLDGWTCTAGTTVNSPVRSGS 63

Query: 208 S*MQVLFLRLRN*RAGST-TVQPFTSPRQIGQASSTSFGFLLAAAT 74
           S ++       N R   T TVQP +     G     S+ +L A+ T
Sbjct: 64  SALKATPAGSDNARCAQTVTVQPNSQYTLSGHVQG-SYVYLGASGT 108

>GLYA_HALMA (Q5V3D7) Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine|
           methylase) (SHMT)
          Length = 415

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 11/93 (11%)
 Frame = +3

Query: 270 SSKPREVDPARLAEWKQLESAKDRQDAISIV----TGLNPGSMIIGDYLIDPN-----SG 422
           S+ PREVD  R+ E      A    D   I      G++   + + D++         +G
Sbjct: 174 SAYPREVDFERIQEAADAVDAYHLADIAHITGLVAAGVHESPVGVADFVTGSTHKTIRAG 233

Query: 423 SSDSFMGNSDWSDDSDSYTFPG--GGDIMFSEA 515
                M + +++DD D+  FPG  GG +M + A
Sbjct: 234 RGGIIMCDEEYADDIDAAVFPGSQGGPLMHNVA 266

>LPHN2_BOVIN (O97817) Latrophilin-2 precursor (Calcium-independent|
           alpha-latrotoxin receptor 2)
          Length = 1478

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +3

Query: 294 PARLAEWKQLESAKDRQDAISIVTGLNPGSMIIGDYLIDP 413
           P  L  WK + S++    A  ++  L  G+ ++ D L++P
Sbjct: 623 PEALESWKHMNSSEQAHTATMLLDTLEEGAFVLADNLVEP 662

>MODA_HAEIN (P45323) Molybdate-binding periplasmic protein precursor|
          Length = 254

 Score = 30.0 bits (66), Expect = 4.9
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 6   SNCLEQFKNAYVKEKPANEVSIAVAAASKKPKDVELACP 122
           ++ L+Q    Y K+ P NEV  + A++S   K VE   P
Sbjct: 35  TDALQQVAKDYAKQNPKNEVVFSFASSSTLAKQVEEGAP 73

>L_MUMPM (P30929) Large structural protein (Protein L) (Transcriptase)|
           (Replicase) [Includes: RNA-directed RNA polymerase (EC
           2.7.7.48); mRNA (guanine-N(7)-)-methyltransferase (EC
           2.1.1.56); mRNA guanylyltransferase (EC 2.7.7.-)]
          Length = 2261

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
 Frame = +1

Query: 100 RMW---SLLALSAVGK*RAGQWLNQLVNFSIARRELAFMKIACSLGHTRNSASM*RPDTL 270
           R+W   +L A  A  K R      ++++F    + LAF       G+ R+   +  P TL
Sbjct: 366 RLWGHPTLTASQAASKVRESMCAPKVLDFQTIMKTLAFFHAILINGYRRSHNGIWPPTTL 425

Query: 271 HQNLVKLTRHVWLSGSSLKVQRI 339
           H N  K    +    S LK + +
Sbjct: 426 HGNAPKSLIEMRHDNSELKYEYV 448

>NR5A2_RAT (Q9QWM1) Orphan nuclear receptor NR5A2 (Liver receptor homolog 1)|
           (LRH-1) (FTZ-F1 beta)
          Length = 560

 Score = 29.3 bits (64), Expect = 8.3
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 10/63 (15%)
 Frame = +3

Query: 99  KDVELACPICRGEVKGW----TVVEPARQFL-----NRKKRTCI-HEDCLFIGSYKKLCK 248
           +D+E  CP+C  +V G+       E  + F      N+K+ TCI +++C    + +K C 
Sbjct: 101 EDLEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNQKRYTCIENQNCQIDKTQRKRCP 160

Query: 249 HVK 257
           + +
Sbjct: 161 YCR 163

>NR5A2_MOUSE (P45448) Orphan nuclear receptor NR5A2 (Liver receptor homolog 1)|
           (LRH-1)
          Length = 560

 Score = 29.3 bits (64), Expect = 8.3
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 10/63 (15%)
 Frame = +3

Query: 99  KDVELACPICRGEVKGW----TVVEPARQFL-----NRKKRTCI-HEDCLFIGSYKKLCK 248
           +D+E  CP+C  +V G+       E  + F      N+K+ TCI +++C    + +K C 
Sbjct: 101 EDLEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNQKRYTCIENQNCQIDKTQRKRCP 160

Query: 249 HVK 257
           + +
Sbjct: 161 YCR 163

>IL3B2_MOUSE (P26954) Interleukin-3 receptor class 2 beta chain precursor|
           (Interleukin-3 receptor class II beta chain)
           (Colony-stimulating factor 2 receptor, beta 2 chain)
          Length = 878

 Score = 29.3 bits (64), Expect = 8.3
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = +3

Query: 267 PSSKPREVDPARLAEWKQLESAKDRQDAISIVTGLNPGSMIIGDYL 404
           PS +P+E  P  L+  KQ   A+D    + I +G   GSM+  DY+
Sbjct: 668 PSVEPKENPPVELSVEKQ--EARDNPMTLPISSGGPEGSMMASDYV 711

>GLYA_NATPD (Q3IRX5) Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine|
           methylase) (SHMT)
          Length = 424

 Score = 29.3 bits (64), Expect = 8.3
 Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
 Frame = +3

Query: 270 SSKPREVDPARLAEWKQLESAKDRQDA-----ISIVTGL-----NPGSMIIGDYLIDPN- 416
           S+ PREV      E+++++ A D  DA     I+ +TGL     +   + + D++     
Sbjct: 174 SAYPREV------EFERIQEAADAVDAYHLADIAHITGLVAAGVHQSPVGVADFVTGSTH 227

Query: 417 ----SGSSDSFMGNSDWSDDSDSYTFPG--GGDIMFSEA 515
               +G     M + +++DD D+  FPG  GG +M + A
Sbjct: 228 KTIRAGRGGIVMCDEEYADDIDAAVFPGAQGGPLMHNVA 266


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,643,625
Number of Sequences: 219361
Number of extensions: 1656724
Number of successful extensions: 4725
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4714
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4815021120
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)