No.
Definition
Score (bits)
E Value
1 dbj|AK103286.1| Oryza sativa (japonica cultivar-group) cDNA clon...
718
0.0
2 gb|BT018117.1| Zea mays clone EL01N0554A04.c mRNA sequence
509
e-141
3 gb|AC138454.2| Oryza sativa (japonica cultivar-group) chromosome...
242
1e-60
4 gb|AC123516.2| Oryza sativa (japonica cultivar-group) chromosome...
242
1e-60
5 dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D...
242
1e-60
6 gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome...
242
1e-60
7 dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D...
234
3e-58
8 gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome...
234
3e-58
9 emb|BX000507.2|CNS08CDX Oryza sativa chromosome 12, . BAC OJ1003...
234
3e-58
10 gb|AC169378.2| Sorghum bicolor clone SB_BBc0007L02, complete seq...
194
3e-46
11 gb|AY023576.1| Oryza sativa microsatellite MRG5901 containing (T...
135
2e-28
12 emb|BX000558.5|CNS08CE5 Oryza sativa chromosome 12, . Partial se...
90
1e-14
13 emb|BX000498.1|CNS08CDO Oryza sativa chromosome 12, . BAC OSJNBa...
90
1e-14
14 gb|AC091091.2| Gallus gallus clone WAG-93J15, complete sequence
46
0.15
15 emb|AJ720875.1| Gallus gallus mRNA for hypothetical protein, clo...
46
0.15
16 gb|U67955.1| Caenorhabditis elegans cosmid C16H3, complete sequence
44
0.59
17 emb|AL445590.4| Human DNA sequence from clone RP11-50D16 on chro...
44
0.59
18 ref|NM_115549.2| Arabidopsis thaliana unknown protein AT3G56900 ...
42
2.3
19 gb|AC129775.4| Mus musculus BAC clone RP23-174N20 from chromosom...
42
2.3
20 gb|AC124388.4| Mus musculus BAC clone RP24-426O7 from chromosome...
42
2.3
21 gb|AC141107.5| Medicago truncatula clone mth2-34a12, complete se...
42
2.3
22 emb|AL390921.1|ATT8M16 Arabidopsis thaliana DNA chromosome 3, BA...
42
2.3
23 gb|AC123595.1| Homo sapiens chromosome 5 clone RP11-213H15, comp...
42
2.3
24 gb|AC116333.2| Homo sapiens chromosome 5 clone CTD-2242E19, comp...
42
2.3
25 gb|AC093281.2| Homo sapiens chromosome 5 clone RP11-414H23, comp...
42
2.3
26 gb|AC149050.2| Medicago truncatula chromosome 7 BAC clone mth2-6...
42
2.3
27 emb|BX822596.1|CNS0A5YE Arabidopsis thaliana Full-length cDNA Co...
42
2.3
28 emb|BX822954.1|CNS0A5WY Arabidopsis thaliana Full-length cDNA Co...
42
2.3
29 emb|BX824632.1|CNS0A4QE Arabidopsis thaliana Full-length cDNA Co...
42
2.3
30 gb|BT005366.1| Arabidopsis thaliana At3g56900 mRNA, complete cds
42
2.3
31 gb|AC112204.2| Homo sapiens chromosome 5 clone RP11-79C6, comple...
42
2.3
32 dbj|AK118686.1| Arabidopsis thaliana At3g56900 mRNA for unknown ...
42
2.3
33 gb|AC147473.3| Mus musculus BAC clone RP24-353P11 from 13, compl...
42
2.3
34 emb|AL731789.9| Mouse DNA sequence from clone RP23-52F6 on chrom...
42
2.3
35 gb|AC122563.8| Mus musculus chromosome 1, clone RP24-208F6, comp...
40
9.2
36 ref|XM_629042.1| Dictyostelium discoideum hypothetical protein (...
40
9.2
37 gb|AC110261.25| Mus musculus chromosome 1, clone RP23-289I3, com...
40
9.2
38 ref|XM_322748.1| Neurospora crassa OR74A hypothetical protein ( ...
40
9.2
39 ref|XM_950785.1| Neurospora crassa OR74A hypothetical protein ( ...
40
9.2
40 gb|AC125171.4| Mus musculus BAC clone RP24-475M20 from chromosom...
40
9.2
41 gb|AC126431.3| Mus musculus BAC clone RP24-407P8 from chromosome...
40
9.2
42 gb|CP000089.1| Dechloromonas aromatica RCB, complete genome
40
9.2
43 emb|AL669988.1|NCB23H20 Neurospora crassa DNA linkage group II B...
40
9.2
44 emb|AL646096.8| Mouse DNA sequence from clone RP23-176J13 on chr...
40
9.2
45 gb|AC160411.8| Mus musculus BAC RP23-231J3 (Roswell Park Cancer...
40
9.2
46 dbj|AK123332.1| Homo sapiens cDNA FLJ41338 fis, clone BRAMY3000307
40
9.2
47 dbj|AB194086.1| Physcomitrella patens subsp. patens pseudogene m...
40
9.2
48 dbj|AB194085.1| Physcomitrella patens subsp. patens pseudogene m...
40
9.2
49 gb|AC025289.6| Homo sapiens chromosome 16 clone RP11-533D19, com...
40
9.2
50 gb|AC025480.7| Homo sapiens chromosome 18, clone RP11-12N19, com...
40
9.2
51 gb|AC020716.3| Homo sapiens BAC clone RP11-449G13 from 16, compl...
40
9.2
52 gb|AC160405.7| Mus musculus BAC RP23-380K24 (Roswell Park Cance...
40
9.2
53 gb|AC017047.4|AC017047 Homo sapiens BAC clone RP11-323F10 from X...
40
9.2
54 gb|AC026472.8| Homo sapiens chromosome 16 clone RP11-511J24, com...
40
9.2
55 gb|AC138811.3| Homo sapiens chromosome 16 clone RP11-1035H13, co...
40
9.2
56 gb|AC009295.14|AC009295 Mus musculus chromosome 10, clone RP21-3...
40
9.2
57 gb|AC155726.4| Mus musculus 6 BAC RP24-180C9 (Roswell Park Cance...
40
9.2
58 gb|AF130355.1|AF130355 Neurospora crassa Pad-1 (pad-1) gene, com...
40
9.2
>gb|AC138454.2 | Oryza sativa (japonica cultivar-group) chromosome 11 clone
OSJNBa0019B24, complete sequence
Length = 162385
Score = 242 bits (122), Expect = 1e-60
Identities = 170/186 (91%)
Strand = Plus / Minus
Query: 261 gggaggtatatgcctctggtcagcatcatatcctggcaatgttgcatccgtgaaatctgg 320
|||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 10878 gggagggatatgcctctggtcagcatcatatcctggcaacgttgcatctgtgaaatctgg 10819
Query: 321 tgtcacttcttcttcctttggtgccttccctagaggttctactggtcagtggattctggt 380
|||||| |||||||||||||||||||| |||||||||||| |||||| ||||| || ||
Sbjct: 10818 tgtcacctcttcttcctttggtgcctttcctagaggttctggtggtcaatggatactcgt 10759
Query: 381 ggatgttcttcgtggttcttctactgagctagttagtgcactttgctggaaacctgatgg 440
||| |||| |||||||||||| ||||||||||||| |||||||| ||||||||||||||
Sbjct: 10758 ggacattctccgtggttcttctgctgagctagttagcgcactttgttggaaacctgatgg 10699
Query: 441 aagata 446
||||||
Sbjct: 10698 aagata 10693
Score = 115 bits (58), Expect = 2e-22
Identities = 97/110 (88%)
Strand = Plus / Minus
Query: 46 ccaaaactgctagaagaatttgataccaagaaagtaagctggaatccgcacaaacactgt 105
||||| |||||| ||||| |||||||| |||||||||| |||||||||||||| || ||
Sbjct: 11415 ccaaatctgctacaagaaattgatacccagaaagtaagttggaatccgcacaagcattgc 11356
Query: 106 ttagcatttgtatctgggaaggaccaggttacggtccatgactttgagga 155
|| |||||||||||||||||| |||| ||||| || ||||||||||||||
Sbjct: 11355 ttggcatttgtatctgggaagaaccaagttacagttcatgactttgagga 11306
Score = 113 bits (57), Expect = 8e-22
Identities = 87/97 (89%)
Strand = Plus / Minus
Query: 165 taaagaatcgtgcagtctaacaagtgaacatcaaaaggaagttaaagctattgaatggag 224
||||||||| | || |||||||||||| ||||||||||| ||||||||| ||||||||||
Sbjct: 11137 taaagaatcctacattctaacaagtgaccatcaaaaggatgttaaagctgttgaatggag 11078
Query: 225 gccaaacagcgggaagatgattgcagttggctgcaag 261
|||||| || || ||||||||||||||||| ||||||
Sbjct: 11077 gccaaatagtggaaagatgattgcagttgggtgcaag 11041
Score = 93.7 bits (47), Expect = 7e-16
Identities = 77/87 (88%)
Strand = Plus / Minus
Query: 501 agggttgggaactcctatacgacgcggattaagtagcatatcgttggtgcggtggtcacc 560
||||||||||| |||||| |||| ||||||||||| ||||| || |||| |||||||||
Sbjct: 10382 agggttgggaatgcctataagacgtggattaagtagtatatcattagtgcagtggtcacc 10323
Query: 561 tagtggagattactttttgactgctaa 587
||||||||||||| |||| ||||||||
Sbjct: 10322 tagtggagattaccttttaactgctaa 10296
Score = 89.7 bits (45), Expect = 1e-14
Identities = 60/65 (92%)
Strand = Plus / Minus
Query: 592 gatggaacttttcacttatgggagaccaacacatggacgtcagaaccctggtcttcatcc 651
||||||||||||||||||||||| || || ||||||||||||||||| |||||||||||
Sbjct: 10216 gatggaacttttcacttatgggaaacaaatacatggacgtcagaaccatggtcttcatct 10157
Query: 652 aatgg 656
|||||
Sbjct: 10156 aatgg 10152
Score = 56.0 bits (28), Expect = 2e-04
Identities = 52/60 (86%)
Strand = Plus / Minus
Query: 444 atacttggcctcggcctcttgtaatggccagtcattcacaatttgggatgtttctgaagg 503
|||||||| || |||||||||||| ||| ||||||||||||||||| |||||| ||||
Sbjct: 10526 atacttggtgtccgcctcttgtaatagcccatcattcacaatttgggacgtttctcaagg 10467
Score = 50.1 bits (25), Expect = 0.010
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 2 ccatagccgagtccttcaagcaaatgctcttcccttc 38
||||||| ||||||||||| |||||| ||||||||||
Sbjct: 11656 ccatagctgagtccttcaaacaaatgatcttcccttc 11620
>gb|AC123516.2 | Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0035B18,
complete sequence
Length = 123425
Score = 242 bits (122), Expect = 1e-60
Identities = 170/186 (91%)
Strand = Plus / Minus
Query: 261 gggaggtatatgcctctggtcagcatcatatcctggcaatgttgcatccgtgaaatctgg 320
|||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 115137 gggagggatatgcctctggtcagcatcatatcctggcaacgttgcatctgtgaaatctgg 115078
Query: 321 tgtcacttcttcttcctttggtgccttccctagaggttctactggtcagtggattctggt 380
|||||| |||||||||||||||||||| |||||||||||| |||||| ||||| || ||
Sbjct: 115077 tgtcacctcttcttcctttggtgcctttcctagaggttctggtggtcaatggatactcgt 115018
Query: 381 ggatgttcttcgtggttcttctactgagctagttagtgcactttgctggaaacctgatgg 440
||| |||| |||||||||||| ||||||||||||| |||||||| ||||||||||||||
Sbjct: 115017 ggacattctccgtggttcttctgctgagctagttagcgcactttgttggaaacctgatgg 114958
Query: 441 aagata 446
||||||
Sbjct: 114957 aagata 114952
Score = 115 bits (58), Expect = 2e-22
Identities = 97/110 (88%)
Strand = Plus / Minus
Query: 46 ccaaaactgctagaagaatttgataccaagaaagtaagctggaatccgcacaaacactgt 105
||||| |||||| ||||| |||||||| |||||||||| |||||||||||||| || ||
Sbjct: 115674 ccaaatctgctacaagaaattgatacccagaaagtaagttggaatccgcacaagcattgc 115615
Query: 106 ttagcatttgtatctgggaaggaccaggttacggtccatgactttgagga 155
|| |||||||||||||||||| |||| ||||| || ||||||||||||||
Sbjct: 115614 ttggcatttgtatctgggaagaaccaagttacagttcatgactttgagga 115565
Score = 113 bits (57), Expect = 8e-22
Identities = 87/97 (89%)
Strand = Plus / Minus
Query: 165 taaagaatcgtgcagtctaacaagtgaacatcaaaaggaagttaaagctattgaatggag 224
||||||||| | || |||||||||||| ||||||||||| ||||||||| ||||||||||
Sbjct: 115396 taaagaatcctacattctaacaagtgaccatcaaaaggatgttaaagctgttgaatggag 115337
Query: 225 gccaaacagcgggaagatgattgcagttggctgcaag 261
|||||| || || ||||||||||||||||| ||||||
Sbjct: 115336 gccaaatagtggaaagatgattgcagttgggtgcaag 115300
Score = 93.7 bits (47), Expect = 7e-16
Identities = 77/87 (88%)
Strand = Plus / Minus
Query: 501 agggttgggaactcctatacgacgcggattaagtagcatatcgttggtgcggtggtcacc 560
||||||||||| |||||| |||| ||||||||||| ||||| || |||| |||||||||
Sbjct: 114641 agggttgggaatgcctataagacgtggattaagtagtatatcattagtgcagtggtcacc 114582
Query: 561 tagtggagattactttttgactgctaa 587
||||||||||||| |||| ||||||||
Sbjct: 114581 tagtggagattaccttttaactgctaa 114555
Score = 89.7 bits (45), Expect = 1e-14
Identities = 60/65 (92%)
Strand = Plus / Minus
Query: 592 gatggaacttttcacttatgggagaccaacacatggacgtcagaaccctggtcttcatcc 651
||||||||||||||||||||||| || || ||||||||||||||||| |||||||||||
Sbjct: 114475 gatggaacttttcacttatgggaaacaaatacatggacgtcagaaccatggtcttcatct 114416
Query: 652 aatgg 656
|||||
Sbjct: 114415 aatgg 114411
Score = 56.0 bits (28), Expect = 2e-04
Identities = 52/60 (86%)
Strand = Plus / Minus
Query: 444 atacttggcctcggcctcttgtaatggccagtcattcacaatttgggatgtttctgaagg 503
|||||||| || |||||||||||| ||| ||||||||||||||||| |||||| ||||
Sbjct: 114785 atacttggtgtccgcctcttgtaatagcccatcattcacaatttgggacgtttctcaagg 114726
Score = 50.1 bits (25), Expect = 0.010
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 2 ccatagccgagtccttcaagcaaatgctcttcccttc 38
||||||| ||||||||||| |||||| ||||||||||
Sbjct: 115915 ccatagctgagtccttcaaacaaatgatcttcccttc 115879
>dbj|AP008217.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
sequence
Length = 28386948
Score = 242 bits (122), Expect = 1e-60
Identities = 170/186 (91%)
Strand = Plus / Minus
Query: 261 gggaggtatatgcctctggtcagcatcatatcctggcaatgttgcatccgtgaaatctgg 320
|||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 1496342 gggagggatatgcctctggtcagcatcatatcctggcaacgttgcatctgtgaaatctgg 1496283
Query: 321 tgtcacttcttcttcctttggtgccttccctagaggttctactggtcagtggattctggt 380
|||||| |||||||||||||||||||| |||||||||||| |||||| ||||| || ||
Sbjct: 1496282 tgtcacctcttcttcctttggtgcctttcctagaggttctggtggtcaatggatactcgt 1496223
Query: 381 ggatgttcttcgtggttcttctactgagctagttagtgcactttgctggaaacctgatgg 440
||| |||| |||||||||||| ||||||||||||| |||||||| ||||||||||||||
Sbjct: 1496222 ggacattctccgtggttcttctgctgagctagttagcgcactttgttggaaacctgatgg 1496163
Query: 441 aagata 446
||||||
Sbjct: 1496162 aagata 1496157
Score = 115 bits (58), Expect = 2e-22
Identities = 97/110 (88%)
Strand = Plus / Minus
Query: 46 ccaaaactgctagaagaatttgataccaagaaagtaagctggaatccgcacaaacactgt 105
||||| |||||| ||||| |||||||| |||||||||| |||||||||||||| || ||
Sbjct: 1496879 ccaaatctgctacaagaaattgatacccagaaagtaagttggaatccgcacaagcattgc 1496820
Query: 106 ttagcatttgtatctgggaaggaccaggttacggtccatgactttgagga 155
|| |||||||||||||||||| |||| ||||| || ||||||||||||||
Sbjct: 1496819 ttggcatttgtatctgggaagaaccaagttacagttcatgactttgagga 1496770
Score = 113 bits (57), Expect = 8e-22
Identities = 87/97 (89%)
Strand = Plus / Minus
Query: 165 taaagaatcgtgcagtctaacaagtgaacatcaaaaggaagttaaagctattgaatggag 224
||||||||| | || |||||||||||| ||||||||||| ||||||||| ||||||||||
Sbjct: 1496601 taaagaatcctacattctaacaagtgaccatcaaaaggatgttaaagctgttgaatggag 1496542
Query: 225 gccaaacagcgggaagatgattgcagttggctgcaag 261
|||||| || || ||||||||||||||||| ||||||
Sbjct: 1496541 gccaaatagtggaaagatgattgcagttgggtgcaag 1496505
Score = 93.7 bits (47), Expect = 7e-16
Identities = 77/87 (88%)
Strand = Plus / Minus
Query: 501 agggttgggaactcctatacgacgcggattaagtagcatatcgttggtgcggtggtcacc 560
||||||||||| |||||| |||| ||||||||||| ||||| || |||| |||||||||
Sbjct: 1495846 agggttgggaatgcctataagacgtggattaagtagtatatcattagtgcagtggtcacc 1495787
Query: 561 tagtggagattactttttgactgctaa 587
||||||||||||| |||| ||||||||
Sbjct: 1495786 tagtggagattaccttttaactgctaa 1495760
Score = 89.7 bits (45), Expect = 1e-14
Identities = 60/65 (92%)
Strand = Plus / Minus
Query: 592 gatggaacttttcacttatgggagaccaacacatggacgtcagaaccctggtcttcatcc 651
||||||||||||||||||||||| || || ||||||||||||||||| |||||||||||
Sbjct: 1495680 gatggaacttttcacttatgggaaacaaatacatggacgtcagaaccatggtcttcatct 1495621
Query: 652 aatgg 656
|||||
Sbjct: 1495620 aatgg 1495616
Score = 56.0 bits (28), Expect = 2e-04
Identities = 52/60 (86%)
Strand = Plus / Minus
Query: 444 atacttggcctcggcctcttgtaatggccagtcattcacaatttgggatgtttctgaagg 503
|||||||| || |||||||||||| ||| ||||||||||||||||| |||||| ||||
Sbjct: 1495990 atacttggtgtccgcctcttgtaatagcccatcattcacaatttgggacgtttctcaagg 1495931
Score = 50.1 bits (25), Expect = 0.010
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 2 ccatagccgagtccttcaagcaaatgctcttcccttc 38
||||||| ||||||||||| |||||| ||||||||||
Sbjct: 1497120 ccatagctgagtccttcaaacaaatgatcttcccttc 1497084
>gb|DP000010.1 | Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
Length = 28369397
Score = 242 bits (122), Expect = 1e-60
Identities = 170/186 (91%)
Strand = Plus / Minus
Query: 261 gggaggtatatgcctctggtcagcatcatatcctggcaatgttgcatccgtgaaatctgg 320
|||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 1494063 gggagggatatgcctctggtcagcatcatatcctggcaacgttgcatctgtgaaatctgg 1494004
Query: 321 tgtcacttcttcttcctttggtgccttccctagaggttctactggtcagtggattctggt 380
|||||| |||||||||||||||||||| |||||||||||| |||||| ||||| || ||
Sbjct: 1494003 tgtcacctcttcttcctttggtgcctttcctagaggttctggtggtcaatggatactcgt 1493944
Query: 381 ggatgttcttcgtggttcttctactgagctagttagtgcactttgctggaaacctgatgg 440
||| |||| |||||||||||| ||||||||||||| |||||||| ||||||||||||||
Sbjct: 1493943 ggacattctccgtggttcttctgctgagctagttagcgcactttgttggaaacctgatgg 1493884
Query: 441 aagata 446
||||||
Sbjct: 1493883 aagata 1493878
Score = 115 bits (58), Expect = 2e-22
Identities = 97/110 (88%)
Strand = Plus / Minus
Query: 46 ccaaaactgctagaagaatttgataccaagaaagtaagctggaatccgcacaaacactgt 105
||||| |||||| ||||| |||||||| |||||||||| |||||||||||||| || ||
Sbjct: 1494600 ccaaatctgctacaagaaattgatacccagaaagtaagttggaatccgcacaagcattgc 1494541
Query: 106 ttagcatttgtatctgggaaggaccaggttacggtccatgactttgagga 155
|| |||||||||||||||||| |||| ||||| || ||||||||||||||
Sbjct: 1494540 ttggcatttgtatctgggaagaaccaagttacagttcatgactttgagga 1494491
Score = 113 bits (57), Expect = 8e-22
Identities = 87/97 (89%)
Strand = Plus / Minus
Query: 165 taaagaatcgtgcagtctaacaagtgaacatcaaaaggaagttaaagctattgaatggag 224
||||||||| | || |||||||||||| ||||||||||| ||||||||| ||||||||||
Sbjct: 1494322 taaagaatcctacattctaacaagtgaccatcaaaaggatgttaaagctgttgaatggag 1494263
Query: 225 gccaaacagcgggaagatgattgcagttggctgcaag 261
|||||| || || ||||||||||||||||| ||||||
Sbjct: 1494262 gccaaatagtggaaagatgattgcagttgggtgcaag 1494226
Score = 93.7 bits (47), Expect = 7e-16
Identities = 77/87 (88%)
Strand = Plus / Minus
Query: 501 agggttgggaactcctatacgacgcggattaagtagcatatcgttggtgcggtggtcacc 560
||||||||||| |||||| |||| ||||||||||| ||||| || |||| |||||||||
Sbjct: 1493567 agggttgggaatgcctataagacgtggattaagtagtatatcattagtgcagtggtcacc 1493508
Query: 561 tagtggagattactttttgactgctaa 587
||||||||||||| |||| ||||||||
Sbjct: 1493507 tagtggagattaccttttaactgctaa 1493481
Score = 89.7 bits (45), Expect = 1e-14
Identities = 60/65 (92%)
Strand = Plus / Minus
Query: 592 gatggaacttttcacttatgggagaccaacacatggacgtcagaaccctggtcttcatcc 651
||||||||||||||||||||||| || || ||||||||||||||||| |||||||||||
Sbjct: 1493401 gatggaacttttcacttatgggaaacaaatacatggacgtcagaaccatggtcttcatct 1493342
Query: 652 aatgg 656
|||||
Sbjct: 1493341 aatgg 1493337
Score = 56.0 bits (28), Expect = 2e-04
Identities = 52/60 (86%)
Strand = Plus / Minus
Query: 444 atacttggcctcggcctcttgtaatggccagtcattcacaatttgggatgtttctgaagg 503
|||||||| || |||||||||||| ||| ||||||||||||||||| |||||| ||||
Sbjct: 1493711 atacttggtgtccgcctcttgtaatagcccatcattcacaatttgggacgtttctcaagg 1493652
Score = 50.1 bits (25), Expect = 0.010
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 2 ccatagccgagtccttcaagcaaatgctcttcccttc 38
||||||| ||||||||||| |||||| ||||||||||
Sbjct: 1494841 ccatagctgagtccttcaaacaaatgatcttcccttc 1494805
>dbj|AP008218.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
sequence
Length = 27566993
Score = 234 bits (118), Expect = 3e-58
Identities = 169/186 (90%)
Strand = Plus / Minus
Query: 261 gggaggtatatgcctctggtcagcatcatatcctggcaatgttgcatccgtgaaatctgg 320
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1407088 gggagggatatgcctctggtcagcatcatatcctggcaatgttgcatctgtgaaatctgg 1407029
Query: 321 tgtcacttcttcttcctttggtgccttccctagaggttctactggtcagtggattctggt 380
|||||| |||||||| ||||||||||| ||||||||||| |||||| ||||| || ||
Sbjct: 1407028 tgtcacctcttcttcttttggtgcctttcctagaggttccggtggtcaatggatactcgt 1406969
Query: 381 ggatgttcttcgtggttcttctactgagctagttagtgcactttgctggaaacctgatgg 440
||| |||| |||||||||||| ||||||||||||| |||||||| ||||||||||||||
Sbjct: 1406968 ggacattctccgtggttcttctgctgagctagttagcgcactttgttggaaacctgatgg 1406909
Query: 441 aagata 446
||||||
Sbjct: 1406908 aagata 1406903
Score = 109 bits (55), Expect = 1e-20
Identities = 79/87 (90%)
Strand = Plus / Minus
Query: 501 agggttgggaactcctatacgacgcggattaagtagcatatcgttggtgcggtggtcacc 560
|||||||||||| |||||| |||| ||||||||||| ||||| || ||||||||||||||
Sbjct: 1406597 agggttgggaacgcctataagacgtggattaagtagtatatcattagtgcggtggtcacc 1406538
Query: 561 tagtggagattactttttgactgctaa 587
||||||||||||| |||| ||||||||
Sbjct: 1406537 tagtggagattaccttttaactgctaa 1406511
Score = 107 bits (54), Expect = 5e-20
Identities = 96/110 (87%)
Strand = Plus / Minus
Query: 46 ccaaaactgctagaagaatttgataccaagaaagtaagctggaatccgcacaaacactgt 105
||||| |||||| ||||| |||||||| |||||||||| |||||||| ||||| || ||
Sbjct: 1407585 ccaaatctgctacaagaaattgatacccagaaagtaagttggaatcctcacaagcattgc 1407526
Query: 106 ttagcatttgtatctgggaaggaccaggttacggtccatgactttgagga 155
|| |||||||||||||||||| |||| ||||| || ||||||||||||||
Sbjct: 1407525 ttggcatttgtatctgggaagaaccaagttacagttcatgactttgagga 1407476
Score = 105 bits (53), Expect = 2e-19
Identities = 86/97 (88%)
Strand = Plus / Minus
Query: 165 taaagaatcgtgcagtctaacaagtgaacatcaaaaggaagttaaagctattgaatggag 224
||||||||| | || |||||||||||| ||||||||||| ||||||||| ||||||||||
Sbjct: 1407307 taaagaatcctacattctaacaagtgaccatcaaaaggatgttaaagctgttgaatggag 1407248
Query: 225 gccaaacagcgggaagatgattgcagttggctgcaag 261
|||||| || || ||| ||||||||||||| ||||||
Sbjct: 1407247 gccaaatagtggaaaggtgattgcagttgggtgcaag 1407211
Score = 89.7 bits (45), Expect = 1e-14
Identities = 84/97 (86%)
Strand = Plus / Minus
Query: 165 taaagaatcgtgcagtctaacaagtgaacatcaaaaggaagttaaagctattgaatggag 224
||||||||| | || |||||||||||| | ||||| || ||||||||| ||||||||||
Sbjct: 1444750 taaagaatcctacattctaacaagtgaccgacaaaacgatgttaaagctgttgaatggag 1444691
Query: 225 gccaaacagcgggaagatgattgcagttggctgcaag 261
|||||| || | ||||||||||||||||||||||||
Sbjct: 1444690 gccaaatagtgaaaagatgattgcagttggctgcaag 1444654
Score = 89.7 bits (45), Expect = 1e-14
Identities = 60/65 (92%)
Strand = Plus / Minus
Query: 592 gatggaacttttcacttatgggagaccaacacatggacgtcagaaccctggtcttcatcc 651
||||||||||||||||||||||| || || ||||||||||||||||| |||||||||||
Sbjct: 1406431 gatggaacttttcacttatgggaaacaaatacatggacgtcagaaccatggtcttcatct 1406372
Query: 652 aatgg 656
|||||
Sbjct: 1406371 aatgg 1406367
Score = 77.8 bits (39), Expect = 4e-11
Identities = 57/63 (90%)
Strand = Plus / Plus
Query: 259 aagggaggtatatgcctctggtcagcatcatatcctggcaatgttgcatccgtgaaatct 318
|||||||| ||||||||||||||||| ||||||| || ||||||||||| |||||||||
Sbjct: 1512855 aagggaggaatatgcctctggtcagcgtcatatcatgacaatgttgcatttgtgaaatct 1512914
Query: 319 ggt 321
|||
Sbjct: 1512915 ggt 1512917
Score = 63.9 bits (32), Expect = 6e-07
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 2 ccatagccgagtccttcaagcaaatgctcttcccttcttgcaat 45
||||||| ||||||||||| ||||||||||||||||| ||||||
Sbjct: 1407829 ccatagctgagtccttcaaacaaatgctcttcccttcgtgcaat 1407786
Score = 63.9 bits (32), Expect = 6e-07
Identities = 53/60 (88%)
Strand = Plus / Minus
Query: 444 atacttggcctcggcctcttgtaatggccagtcattcacaatttgggatgtttctgaagg 503
|||||||| || |||||||||||| ||| |||||||||||||||||||||||| ||||
Sbjct: 1406741 atacttggtatctgcctcttgtaatagcccatcattcacaatttgggatgtttctcaagg 1406682
Score = 58.0 bits (29), Expect = 4e-05
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 2 ccatagccgagtccttcaagcaaatgctcttcccttc 38
||||||| ||||||||||| |||||||||||||||||
Sbjct: 1444915 ccatagctgagtccttcaaacaaatgctcttcccttc 1444879
Score = 58.0 bits (29), Expect = 4e-05
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 290 atcctggcaatgttgcatccgtgaaatctggtgtcac 326
||||||||||||||||||| ||||||||| |||||||
Sbjct: 1444539 atcctggcaatgttgcatctgtgaaatctagtgtcac 1444503
Score = 52.0 bits (26), Expect = 0.002
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 5 tagccgagtccttcaagcaaatgctcttcccttcttgc 42
|||| ||||||||||| |||||||| ||||||||||||
Sbjct: 1512682 tagctgagtccttcaaacaaatgctattcccttcttgc 1512719
>gb|DP000011.1 | Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 234 bits (118), Expect = 3e-58
Identities = 169/186 (90%)
Strand = Plus / Minus
Query: 261 gggaggtatatgcctctggtcagcatcatatcctggcaatgttgcatccgtgaaatctgg 320
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1407088 gggagggatatgcctctggtcagcatcatatcctggcaatgttgcatctgtgaaatctgg 1407029
Query: 321 tgtcacttcttcttcctttggtgccttccctagaggttctactggtcagtggattctggt 380
|||||| |||||||| ||||||||||| ||||||||||| |||||| ||||| || ||
Sbjct: 1407028 tgtcacctcttcttcttttggtgcctttcctagaggttccggtggtcaatggatactcgt 1406969
Query: 381 ggatgttcttcgtggttcttctactgagctagttagtgcactttgctggaaacctgatgg 440
||| |||| |||||||||||| ||||||||||||| |||||||| ||||||||||||||
Sbjct: 1406968 ggacattctccgtggttcttctgctgagctagttagcgcactttgttggaaacctgatgg 1406909
Query: 441 aagata 446
||||||
Sbjct: 1406908 aagata 1406903
Score = 109 bits (55), Expect = 1e-20
Identities = 79/87 (90%)
Strand = Plus / Minus
Query: 501 agggttgggaactcctatacgacgcggattaagtagcatatcgttggtgcggtggtcacc 560
|||||||||||| |||||| |||| ||||||||||| ||||| || ||||||||||||||
Sbjct: 1406597 agggttgggaacgcctataagacgtggattaagtagtatatcattagtgcggtggtcacc 1406538
Query: 561 tagtggagattactttttgactgctaa 587
||||||||||||| |||| ||||||||
Sbjct: 1406537 tagtggagattaccttttaactgctaa 1406511
Score = 107 bits (54), Expect = 5e-20
Identities = 96/110 (87%)
Strand = Plus / Minus
Query: 46 ccaaaactgctagaagaatttgataccaagaaagtaagctggaatccgcacaaacactgt 105
||||| |||||| ||||| |||||||| |||||||||| |||||||| ||||| || ||
Sbjct: 1407585 ccaaatctgctacaagaaattgatacccagaaagtaagttggaatcctcacaagcattgc 1407526
Query: 106 ttagcatttgtatctgggaaggaccaggttacggtccatgactttgagga 155
|| |||||||||||||||||| |||| ||||| || ||||||||||||||
Sbjct: 1407525 ttggcatttgtatctgggaagaaccaagttacagttcatgactttgagga 1407476
Score = 105 bits (53), Expect = 2e-19
Identities = 86/97 (88%)
Strand = Plus / Minus
Query: 165 taaagaatcgtgcagtctaacaagtgaacatcaaaaggaagttaaagctattgaatggag 224
||||||||| | || |||||||||||| ||||||||||| ||||||||| ||||||||||
Sbjct: 1407307 taaagaatcctacattctaacaagtgaccatcaaaaggatgttaaagctgttgaatggag 1407248
Query: 225 gccaaacagcgggaagatgattgcagttggctgcaag 261
|||||| || || ||| ||||||||||||| ||||||
Sbjct: 1407247 gccaaatagtggaaaggtgattgcagttgggtgcaag 1407211
Score = 89.7 bits (45), Expect = 1e-14
Identities = 84/97 (86%)
Strand = Plus / Minus
Query: 165 taaagaatcgtgcagtctaacaagtgaacatcaaaaggaagttaaagctattgaatggag 224
||||||||| | || |||||||||||| | ||||| || ||||||||| ||||||||||
Sbjct: 1444750 taaagaatcctacattctaacaagtgaccgacaaaacgatgttaaagctgttgaatggag 1444691
Query: 225 gccaaacagcgggaagatgattgcagttggctgcaag 261
|||||| || | ||||||||||||||||||||||||
Sbjct: 1444690 gccaaatagtgaaaagatgattgcagttggctgcaag 1444654
Score = 89.7 bits (45), Expect = 1e-14
Identities = 60/65 (92%)
Strand = Plus / Minus
Query: 592 gatggaacttttcacttatgggagaccaacacatggacgtcagaaccctggtcttcatcc 651
||||||||||||||||||||||| || || ||||||||||||||||| |||||||||||
Sbjct: 1406431 gatggaacttttcacttatgggaaacaaatacatggacgtcagaaccatggtcttcatct 1406372
Query: 652 aatgg 656
|||||
Sbjct: 1406371 aatgg 1406367
Score = 77.8 bits (39), Expect = 4e-11
Identities = 57/63 (90%)
Strand = Plus / Plus
Query: 259 aagggaggtatatgcctctggtcagcatcatatcctggcaatgttgcatccgtgaaatct 318
|||||||| ||||||||||||||||| ||||||| || ||||||||||| |||||||||
Sbjct: 1512855 aagggaggaatatgcctctggtcagcgtcatatcatgacaatgttgcatttgtgaaatct 1512914
Query: 319 ggt 321
|||
Sbjct: 1512915 ggt 1512917
Score = 63.9 bits (32), Expect = 6e-07
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 2 ccatagccgagtccttcaagcaaatgctcttcccttcttgcaat 45
||||||| ||||||||||| ||||||||||||||||| ||||||
Sbjct: 1407829 ccatagctgagtccttcaaacaaatgctcttcccttcgtgcaat 1407786
Score = 63.9 bits (32), Expect = 6e-07
Identities = 53/60 (88%)
Strand = Plus / Minus
Query: 444 atacttggcctcggcctcttgtaatggccagtcattcacaatttgggatgtttctgaagg 503
|||||||| || |||||||||||| ||| |||||||||||||||||||||||| ||||
Sbjct: 1406741 atacttggtatctgcctcttgtaatagcccatcattcacaatttgggatgtttctcaagg 1406682
Score = 58.0 bits (29), Expect = 4e-05
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 2 ccatagccgagtccttcaagcaaatgctcttcccttc 38
||||||| ||||||||||| |||||||||||||||||
Sbjct: 1444915 ccatagctgagtccttcaaacaaatgctcttcccttc 1444879
Score = 58.0 bits (29), Expect = 4e-05
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 290 atcctggcaatgttgcatccgtgaaatctggtgtcac 326
||||||||||||||||||| ||||||||| |||||||
Sbjct: 1444539 atcctggcaatgttgcatctgtgaaatctagtgtcac 1444503
Score = 52.0 bits (26), Expect = 0.002
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 5 tagccgagtccttcaagcaaatgctcttcccttcttgc 42
|||| ||||||||||| |||||||| ||||||||||||
Sbjct: 1512682 tagctgagtccttcaaacaaatgctattcccttcttgc 1512719
>emb|BX000507.2 |CNS08CDX Oryza sativa chromosome 12, . BAC OJ1003_C01 of library Monsanto from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 157453
Score = 234 bits (118), Expect = 3e-58
Identities = 169/186 (90%)
Strand = Plus / Plus
Query: 261 gggaggtatatgcctctggtcagcatcatatcctggcaatgttgcatccgtgaaatctgg 320
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 22081 gggagggatatgcctctggtcagcatcatatcctggcaatgttgcatctgtgaaatctgg 22140
Query: 321 tgtcacttcttcttcctttggtgccttccctagaggttctactggtcagtggattctggt 380
|||||| |||||||| ||||||||||| ||||||||||| |||||| ||||| || ||
Sbjct: 22141 tgtcacctcttcttcttttggtgcctttcctagaggttccggtggtcaatggatactcgt 22200
Query: 381 ggatgttcttcgtggttcttctactgagctagttagtgcactttgctggaaacctgatgg 440
||| |||| |||||||||||| ||||||||||||| |||||||| ||||||||||||||
Sbjct: 22201 ggacattctccgtggttcttctgctgagctagttagcgcactttgttggaaacctgatgg 22260
Query: 441 aagata 446
||||||
Sbjct: 22261 aagata 22266
Score = 109 bits (55), Expect = 1e-20
Identities = 79/87 (90%)
Strand = Plus / Plus
Query: 501 agggttgggaactcctatacgacgcggattaagtagcatatcgttggtgcggtggtcacc 560
|||||||||||| |||||| |||| ||||||||||| ||||| || ||||||||||||||
Sbjct: 22572 agggttgggaacgcctataagacgtggattaagtagtatatcattagtgcggtggtcacc 22631
Query: 561 tagtggagattactttttgactgctaa 587
||||||||||||| |||| ||||||||
Sbjct: 22632 tagtggagattaccttttaactgctaa 22658
Score = 107 bits (54), Expect = 5e-20
Identities = 96/110 (87%)
Strand = Plus / Plus
Query: 46 ccaaaactgctagaagaatttgataccaagaaagtaagctggaatccgcacaaacactgt 105
||||| |||||| ||||| |||||||| |||||||||| |||||||| ||||| || ||
Sbjct: 21584 ccaaatctgctacaagaaattgatacccagaaagtaagttggaatcctcacaagcattgc 21643
Query: 106 ttagcatttgtatctgggaaggaccaggttacggtccatgactttgagga 155
|| |||||||||||||||||| |||| ||||| || ||||||||||||||
Sbjct: 21644 ttggcatttgtatctgggaagaaccaagttacagttcatgactttgagga 21693
Score = 105 bits (53), Expect = 2e-19
Identities = 86/97 (88%)
Strand = Plus / Plus
Query: 165 taaagaatcgtgcagtctaacaagtgaacatcaaaaggaagttaaagctattgaatggag 224
||||||||| | || |||||||||||| ||||||||||| ||||||||| ||||||||||
Sbjct: 21862 taaagaatcctacattctaacaagtgaccatcaaaaggatgttaaagctgttgaatggag 21921
Query: 225 gccaaacagcgggaagatgattgcagttggctgcaag 261
|||||| || || ||| ||||||||||||| ||||||
Sbjct: 21922 gccaaatagtggaaaggtgattgcagttgggtgcaag 21958
Score = 89.7 bits (45), Expect = 1e-14
Identities = 60/65 (92%)
Strand = Plus / Plus
Query: 592 gatggaacttttcacttatgggagaccaacacatggacgtcagaaccctggtcttcatcc 651
||||||||||||||||||||||| || || ||||||||||||||||| |||||||||||
Sbjct: 22738 gatggaacttttcacttatgggaaacaaatacatggacgtcagaaccatggtcttcatct 22797
Query: 652 aatgg 656
|||||
Sbjct: 22798 aatgg 22802
Score = 63.9 bits (32), Expect = 6e-07
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 444 atacttggcctcggcctcttgtaatggccagtcattcacaatttgggatgtttctgaagg 503
|||||||| || |||||||||||| ||| |||||||||||||||||||||||| ||||
Sbjct: 22428 atacttggtatctgcctcttgtaatagcccatcattcacaatttgggatgtttctcaagg 22487
Score = 63.9 bits (32), Expect = 6e-07
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 2 ccatagccgagtccttcaagcaaatgctcttcccttcttgcaat 45
||||||| ||||||||||| ||||||||||||||||| ||||||
Sbjct: 21340 ccatagctgagtccttcaaacaaatgctcttcccttcgtgcaat 21383
>gb|AC169378.2 | Sorghum bicolor clone SB_BBc0007L02, complete sequence
Length = 138518
Score = 194 bits (98), Expect = 3e-46
Identities = 164/186 (88%)
Strand = Plus / Plus
Query: 261 gggaggtatatgcctctggtcagcatcatatcctggcaatgttgcatccgtgaaatctgg 320
|||||| |||||||||||||| ||||||||||||||||||||| | | | ||||| ||||
Sbjct: 110101 gggagggatatgcctctggtcggcatcatatcctggcaatgttccgttcatgaaacctgg 110160
Query: 321 tgtcacttcttcttcctttggtgccttccctagaggttctactggtcagtggattctggt 380
|||| || ||||||| | |||||||||||||||||||| |||||||||||| |||||
Sbjct: 110161 catcacctcatcttcctctagtgccttccctagaggttctggtggtcagtggatactggt 110220
Query: 381 ggatgttcttcgtggttcttctactgagctagttagtgcactttgctggaaacctgatgg 440
||||||||||||||| |||||| ||||||| ||||||||||||| ||||||||||||||
Sbjct: 110221 ggatgttcttcgtggctcttctgctgagctcattagtgcactttgttggaaacctgatgg 110280
Query: 441 aagata 446
|||||
Sbjct: 110281 gagata 110286
Score = 111 bits (56), Expect = 3e-21
Identities = 95/108 (87%)
Strand = Plus / Plus
Query: 53 tgctagaagaatttgataccaagaaagtaagctggaatccgcacaaacactgtttagcat 112
|||||||||||||||| ||| |||||||||| |||||||| |||| || || |||||||
Sbjct: 109677 tgctagaagaatttgacacccagaaagtaagttggaatccatacaagcattgcttagcat 109736
Query: 113 ttgtatctgggaaggaccaggttacggtccatgactttgaggattcag 160
|||| ||||| ||| |||||||||| ||||| ||||||||||||||||
Sbjct: 109737 ttgtgtctggcaagaaccaggttactgtccaagactttgaggattcag 109784
Score = 95.6 bits (48), Expect = 2e-16
Identities = 90/104 (86%)
Strand = Plus / Plus
Query: 158 cagatggtaaagaatcgtgcagtctaacaagtgaacatcaaaaggaagttaaagctattg 217
|||||| ||||||| | |||| | |||||||||| ||||||| ||| ||||| ||| |||
Sbjct: 109887 cagatgctaaagaaccatgcattttaacaagtgaccatcaaacggatgttaaggctgttg 109946
Query: 218 aatggaggccaaacagcgggaagatgattgcagttggctgcaag 261
| ||||| ||||| |||||||||||||||||||||| |||||||
Sbjct: 109947 agtggagaccaaatagcgggaagatgattgcagttgcctgcaag 109990
Score = 83.8 bits (42), Expect = 7e-13
Identities = 78/90 (86%)
Strand = Plus / Plus
Query: 501 agggttgggaactcctatacgacgcggattaagtagcatatcgttggtgcggtggtcacc 560
||||||||||||||||||||| || |||||||| | ||||| || ||||||||||||||
Sbjct: 110889 agggttgggaactcctatacggcgtggattaagcaatatatcattagtgcggtggtcacc 110948
Query: 561 tagtggagattactttttgactgctaaatt 590
|||||||||||| || | ||||||||||
Sbjct: 110949 cagtggagattaccttctagctgctaaatt 110978
Score = 73.8 bits (37), Expect = 7e-10
Identities = 58/65 (89%)
Strand = Plus / Plus
Query: 592 gatggaacttttcacttatgggagaccaacacatggacgtcagaaccctggtcttcatcc 651
||||| || |||||||| |||||||| ||||||||||| ||||||||||||||||| ||
Sbjct: 111059 gatggtacatttcacttctgggagacgaacacatggacttcagaaccctggtcttcgtct 111118
Query: 652 aatgg 656
|||||
Sbjct: 111119 aatgg 111123
Score = 40.1 bits (20), Expect = 9.2
Identities = 50/60 (83%)
Strand = Plus / Plus
Query: 444 atacttggcctcggcctcttgtaatggccagtcattcacaatttgggatgtttctgaagg 503
||||||||| || ||||| |||||| | | || ||||||||||||||||| ||| ||||
Sbjct: 110740 atacttggcatctgcctcatgtaatagtccatctttcacaatttgggatgtgtctcaagg 110799
>emb|BX000498.1 |CNS08CDO Oryza sativa chromosome 12, . BAC OSJNBa0009F13 of library OSJNBa from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 183385
Score = 89.7 bits (45), Expect = 1e-14
Identities = 84/97 (86%)
Strand = Plus / Plus
Query: 165 taaagaatcgtgcagtctaacaagtgaacatcaaaaggaagttaaagctattgaatggag 224
||||||||| | || |||||||||||| | ||||| || ||||||||| ||||||||||
Sbjct: 180982 taaagaatcctacattctaacaagtgaccgacaaaacgatgttaaagctgttgaatggag 181041
Query: 225 gccaaacagcgggaagatgattgcagttggctgcaag 261
|||||| || | ||||||||||||||||||||||||
Sbjct: 181042 gccaaatagtgaaaagatgattgcagttggctgcaag 181078
Score = 77.8 bits (39), Expect = 4e-11
Identities = 57/63 (90%)
Strand = Plus / Minus
Query: 259 aagggaggtatatgcctctggtcagcatcatatcctggcaatgttgcatccgtgaaatct 318
|||||||| ||||||||||||||||| ||||||| || ||||||||||| |||||||||
Sbjct: 112877 aagggaggaatatgcctctggtcagcgtcatatcatgacaatgttgcatttgtgaaatct 112818
Query: 319 ggt 321
|||
Sbjct: 112817 ggt 112815
Score = 58.0 bits (29), Expect = 4e-05
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 290 atcctggcaatgttgcatccgtgaaatctggtgtcac 326
||||||||||||||||||| ||||||||| |||||||
Sbjct: 181193 atcctggcaatgttgcatctgtgaaatctagtgtcac 181229
Score = 58.0 bits (29), Expect = 4e-05
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 2 ccatagccgagtccttcaagcaaatgctcttcccttc 38
||||||| ||||||||||| |||||||||||||||||
Sbjct: 180817 ccatagctgagtccttcaaacaaatgctcttcccttc 180853
Score = 52.0 bits (26), Expect = 0.002
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 5 tagccgagtccttcaagcaaatgctcttcccttcttgc 42
|||| ||||||||||| |||||||| ||||||||||||
Sbjct: 113050 tagctgagtccttcaaacaaatgctattcccttcttgc 113013
>emb|AL646096.8 | Mouse DNA sequence from clone RP23-176J13 on chromosome 11 Contains the
5' end of the Scpep1 gene for serine carboxypeptidase 1,
two transcription elongation factor B (SIII) polypeptide 2
(Tceb2) pseudogenes, four novel genes (incl.
A930013B10Rik), the Coil gene for coilin, the Trim25 gene
for tripartite motif protein 25 and the Dgke gene for
diacylglycerol kinase epsilon, complete sequence
Length = 171512
Score = 40.1 bits (20), Expect = 9.2
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 302 ttgcatccgtgaaatctggt 321
||||||||||||||||||||
Sbjct: 146230 ttgcatccgtgaaatctggt 146211
>gb|AF130355.1 |AF130355 Neurospora crassa Pad-1 (pad-1) gene, complete cds
Length = 3921
Score = 40.1 bits (20), Expect = 9.2
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 444 atacttggcctcggcctctt 463
||||||||||||||||||||
Sbjct: 2494 atacttggcctcggcctctt 2475
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,862,292
Number of Sequences: 3902068
Number of extensions: 5862292
Number of successful extensions: 106477
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 106162
Number of HSP's gapped (non-prelim): 312
length of query: 671
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 648
effective length of database: 17,143,297,704
effective search space: 11108856912192
effective search space used: 11108856912192
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)