ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags39d13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK103286.1| Oryza sativa (japonica cultivar-group) cDNA clon... 718 0.0
2gb|BT018117.1| Zea mays clone EL01N0554A04.c mRNA sequence 509 e-141
3gb|AC138454.2| Oryza sativa (japonica cultivar-group) chromosome... 242 1e-60
4gb|AC123516.2| Oryza sativa (japonica cultivar-group) chromosome... 242 1e-60
5dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 242 1e-60
6gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 242 1e-60
7dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 234 3e-58
8gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 234 3e-58
9emb|BX000507.2|CNS08CDX Oryza sativa chromosome 12, . BAC OJ1003... 234 3e-58
10gb|AC169378.2| Sorghum bicolor clone SB_BBc0007L02, complete seq... 194 3e-46
11gb|AY023576.1| Oryza sativa microsatellite MRG5901 containing (T... 135 2e-28
12emb|BX000558.5|CNS08CE5 Oryza sativa chromosome 12, . Partial se... 90 1e-14
13emb|BX000498.1|CNS08CDO Oryza sativa chromosome 12, . BAC OSJNBa... 90 1e-14
14gb|AC091091.2| Gallus gallus clone WAG-93J15, complete sequence 46 0.15
15emb|AJ720875.1| Gallus gallus mRNA for hypothetical protein, clo... 46 0.15
16gb|U67955.1| Caenorhabditis elegans cosmid C16H3, complete sequence 44 0.59
17emb|AL445590.4| Human DNA sequence from clone RP11-50D16 on chro... 44 0.59
18ref|NM_115549.2| Arabidopsis thaliana unknown protein AT3G56900 ... 42 2.3
19gb|AC129775.4| Mus musculus BAC clone RP23-174N20 from chromosom... 42 2.3
20gb|AC124388.4| Mus musculus BAC clone RP24-426O7 from chromosome... 42 2.3
21gb|AC141107.5| Medicago truncatula clone mth2-34a12, complete se... 42 2.3
22emb|AL390921.1|ATT8M16 Arabidopsis thaliana DNA chromosome 3, BA... 42 2.3
23gb|AC123595.1| Homo sapiens chromosome 5 clone RP11-213H15, comp... 42 2.3
24gb|AC116333.2| Homo sapiens chromosome 5 clone CTD-2242E19, comp... 42 2.3
25gb|AC093281.2| Homo sapiens chromosome 5 clone RP11-414H23, comp... 42 2.3
26gb|AC149050.2| Medicago truncatula chromosome 7 BAC clone mth2-6... 42 2.3
27emb|BX822596.1|CNS0A5YE Arabidopsis thaliana Full-length cDNA Co... 42 2.3
28emb|BX822954.1|CNS0A5WY Arabidopsis thaliana Full-length cDNA Co... 42 2.3
29emb|BX824632.1|CNS0A4QE Arabidopsis thaliana Full-length cDNA Co... 42 2.3
30gb|BT005366.1| Arabidopsis thaliana At3g56900 mRNA, complete cds 42 2.3
31gb|AC112204.2| Homo sapiens chromosome 5 clone RP11-79C6, comple... 42 2.3
32dbj|AK118686.1| Arabidopsis thaliana At3g56900 mRNA for unknown ... 42 2.3
33gb|AC147473.3| Mus musculus BAC clone RP24-353P11 from 13, compl... 42 2.3
34emb|AL731789.9| Mouse DNA sequence from clone RP23-52F6 on chrom... 42 2.3
35gb|AC122563.8| Mus musculus chromosome 1, clone RP24-208F6, comp... 40 9.2
36ref|XM_629042.1| Dictyostelium discoideum hypothetical protein (... 40 9.2
37gb|AC110261.25| Mus musculus chromosome 1, clone RP23-289I3, com... 40 9.2
38ref|XM_322748.1| Neurospora crassa OR74A hypothetical protein ( ... 40 9.2
39ref|XM_950785.1| Neurospora crassa OR74A hypothetical protein ( ... 40 9.2
40gb|AC125171.4| Mus musculus BAC clone RP24-475M20 from chromosom... 40 9.2
41gb|AC126431.3| Mus musculus BAC clone RP24-407P8 from chromosome... 40 9.2
42gb|CP000089.1| Dechloromonas aromatica RCB, complete genome 40 9.2
43emb|AL669988.1|NCB23H20 Neurospora crassa DNA linkage group II B... 40 9.2
44emb|AL646096.8| Mouse DNA sequence from clone RP23-176J13 on chr... 40 9.2
45gb|AC160411.8| Mus musculus BAC RP23-231J3 (Roswell Park Cancer... 40 9.2
46dbj|AK123332.1| Homo sapiens cDNA FLJ41338 fis, clone BRAMY3000307 40 9.2
47dbj|AB194086.1| Physcomitrella patens subsp. patens pseudogene m... 40 9.2
48dbj|AB194085.1| Physcomitrella patens subsp. patens pseudogene m... 40 9.2
49gb|AC025289.6| Homo sapiens chromosome 16 clone RP11-533D19, com... 40 9.2
50gb|AC025480.7| Homo sapiens chromosome 18, clone RP11-12N19, com... 40 9.2
51gb|AC020716.3| Homo sapiens BAC clone RP11-449G13 from 16, compl... 40 9.2
52gb|AC160405.7| Mus musculus BAC RP23-380K24 (Roswell Park Cance... 40 9.2
53gb|AC017047.4|AC017047 Homo sapiens BAC clone RP11-323F10 from X... 40 9.2
54gb|AC026472.8| Homo sapiens chromosome 16 clone RP11-511J24, com... 40 9.2
55gb|AC138811.3| Homo sapiens chromosome 16 clone RP11-1035H13, co... 40 9.2
56gb|AC009295.14|AC009295 Mus musculus chromosome 10, clone RP21-3... 40 9.2
57gb|AC155726.4| Mus musculus 6 BAC RP24-180C9 (Roswell Park Cance... 40 9.2
58gb|AF130355.1|AF130355 Neurospora crassa Pad-1 (pad-1) gene, com... 40 9.2

>dbj|AK103286.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033124M23, full
           insert sequence
          Length = 1787

 Score =  718 bits (362), Expect = 0.0
 Identities = 594/670 (88%), Gaps = 1/670 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   ccatagccgagtccttcaagcaaatgctcttcccttcttgcaatccaaaactgctagaag 61
           ||||||| ||||||||||| |||||| |||||||||| ||| ||||||| |||||| |||
Sbjct: 305 ccatagctgagtccttcaaacaaatgatcttcccttcatgcgatccaaatctgctacaag 364

                                                                       
Query: 62  aatttgataccaagaaagtaagctggaatccgcacaaacactgtttagcatttgtatctg 121
           || |||||||| |||||||||| |||||||||||||| || || || |||||||||||||
Sbjct: 365 aaattgatacccagaaagtaagttggaatccgcacaagcattgcttggcatttgtatctg 424

                                                                       
Query: 122 ggaaggaccaggttacggtccatgactttgaggattcagatggtaaagaatcgtgcagtc 181
           ||||| |||| ||||| || ||||||||||||||  |||||  ||||||||| | || ||
Sbjct: 425 ggaagaaccaagttacagttcatgactttgaggagccagataataaagaatcctacattc 484

                                                                       
Query: 182 taacaagtgaacatcaaaaggaagttaaagctattgaatggaggccaaacagcgggaaga 241
           |||||||||| ||||||||||| ||||||||| |||||||||||||||| || || ||||
Sbjct: 485 taacaagtgaccatcaaaaggatgttaaagctgttgaatggaggccaaatagtggaaaga 544

                                                                       
Query: 242 tgattgcagttggctgcaagggaggtatatgcctctggtcagcatcatatcctggcaatg 301
           ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct: 545 tgattgcagttgggtgcaagggagggatatgcctctggtcagcatcatatcctggcaacg 604

                                                                       
Query: 302 ttgcatccgtgaaatctggtgtcacttcttcttcctttggtgccttccctagaggttcta 361
           ||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||| 
Sbjct: 605 ttgcatctgtgaaatctggtgtcacctcttcttcctttggtgcctttcctagaggttctg 664

                                                                       
Query: 362 ctggtcagtggattctggtggatgttcttcgtggttcttctactgagctagttagtgcac 421
            |||||| ||||| || |||||  |||| |||||||||||| ||||||||||||| ||||
Sbjct: 665 gtggtcaatggatactcgtggacattctccgtggttcttctgctgagctagttagcgcac 724

                                                                       
Query: 422 tttgctggaaacctgatggaagatacttggcctcggcctcttgtaatggccagtcattca 481
           |||| |||||||||||||||||||||||||  || |||||||||||| |||  |||||||
Sbjct: 725 tttgttggaaacctgatggaagatacttggtgtccgcctcttgtaatagcccatcattca 784

                                                                       
Query: 482 caatttgggatgtttctgaagggttgggaactcctatacgacgcggattaagtagcatat 541
           |||||||||| |||||| ||||||||||||  |||||| |||| ||||||||||| ||||
Sbjct: 785 caatttgggacgtttctcaagggttgggaatgcctataagacgtggattaagtagtatat 844

                                                                       
Query: 542 cgttggtgcggtggtcacctagtggagattactttttgactgctaaattcgatggaactt 601
           | || |||| |||||||||||||||||||||| |||| ||||||||  | ||||||||||
Sbjct: 845 cattagtgcagtggtcacctagtggagattaccttttaactgctaagcttgatggaactt 904

                                                                       
Query: 602 ttcacttatgggagaccaacacatggacgtcagaaccctggtcttcatccaatgggatat 661
           ||||||||||||| || || ||||||||||||||||| ||||||||||| ||| ||||||
Sbjct: 905 ttcacttatgggaaacaaatacatggacgtcagaaccatggtcttcatctaat-ggatat 963

                     
Query: 662 gtaactggag 671
           ||| ||||||
Sbjct: 964 gtatctggag 973



to top

>gb|BT018117.1| Zea mays clone EL01N0554A04.c mRNA sequence
          Length = 1436

 Score =  509 bits (257), Expect = e-141
 Identities = 523/611 (85%), Gaps = 3/611 (0%)
 Strand = Plus / Plus

                                                                       
Query: 46  ccaaaactgctagaagaatttgataccaagaaagtaagctggaatccgcacaaacactgt 105
           ||||| ||||||||||||||||| ||  |||||||||| ||||| ||  |||| || || 
Sbjct: 300 ccaaatctgctagaagaatttgacactcagaaagtaagttggaacccatacaagcattgc 359

                                                                       
Query: 106 ttagcatttgtatctgggaaggaccaggttacggtccatgactttgaggattcagatggt 165
           ||||| || || ||||||||| |||||||||| ||||| ||||||||||||||||||| |
Sbjct: 360 ttagcgttcgtgtctgggaagaaccaggttactgtccaagactttgaggattcagatgct 419

                                                                       
Query: 166 aaagaatcgtgcagtctaacaagtgaacatcaaaaggaagttaaagctattgaatggagg 225
           |||||| | |||| | |||||| ||| ||||||| ||| ||||| ||| |||| ||||| 
Sbjct: 420 aaagaaccatgcattttaacaaatgatcatcaaacggatgttaaggctgttgagtggaga 479

                                                                       
Query: 226 ccaaacagcgggaagatgattgcagttggctgcaagggaggtatatgcctctggtcagca 285
           ||||| || ||||||||||||||||||| |||||| ||||| |||||||||||||| |||
Sbjct: 480 ccaaatagtgggaagatgattgcagttgcctgcaaaggagggatatgcctctggtcggca 539

                                                                       
Query: 286 tcatatcctggcaatgttgcatccgtgaaatctggtgtcacttcttcttcctttggtgcc 345
           |||||||||||||||||  ||| | |||||||||| ||||   ||||||||||| |||||
Sbjct: 540 tcatatcctggcaatgtcccattcatgaaatctggggtca---cttcttcctttagtgcc 596

                                                                       
Query: 346 ttccctagaggttctactggtcagtggattctggtggatgttcttcgtggttcttctact 405
           |||||||||||||||  |||||||||||| || ||||| ||||||||||| |||||| ||
Sbjct: 597 ttccctagaggttctggtggtcagtggatacttgtggacgttcttcgtggctcttctgct 656

                                                                       
Query: 406 gagctagttagtgcactttgctggaaacctgatggaagatacttggcctcggcctcttgt 465
           ||||| |||||||| ||||| |||||||||||||||||||||||||| || ||||| |||
Sbjct: 657 gagctcgttagtgcgctttgttggaaacctgatggaagatacttggcatctgcctcatgt 716

                                                                       
Query: 466 aatggccagtcattcacaatttgggatgtttctgaagggttgggaactcctatacgacgc 525
           ||| |    || ||||||||||||||||| ||| |||||||||||||||||||||| || 
Sbjct: 717 aatagttcatctttcacaatttgggatgtgtctcaagggttgggaactcctatacggcgt 776

                                                                       
Query: 526 ggattaagtagcatatcgttggtgcggtggtcacctagtggagattactttttgactgct 585
           |||||||| |  ||||| || |||||||||||||| |||||||||||| || |   ||||
Sbjct: 777 ggattaagcaatatatcattagtgcggtggtcacccagtggagattaccttctagttgct 836

                                                                       
Query: 586 aaattcgatggaacttttcacttatgggagaccaacacatggacgtcagaaccctggtct 645
           ||||| ||||| |||||||| || |||||||| ||||||||||| |||||| ||||||||
Sbjct: 837 aaatttgatggtacttttcatttctgggagacaaacacatggacttcagaaacctggtct 896

                      
Query: 646 tcatccaatgg 656
           || || |||||
Sbjct: 897 tcgtctaatgg 907



to top

>gb|AC138454.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0019B24, complete sequence
          Length = 162385

 Score =  242 bits (122), Expect = 1e-60
 Identities = 170/186 (91%)
 Strand = Plus / Minus

                                                                         
Query: 261   gggaggtatatgcctctggtcagcatcatatcctggcaatgttgcatccgtgaaatctgg 320
             |||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 10878 gggagggatatgcctctggtcagcatcatatcctggcaacgttgcatctgtgaaatctgg 10819

                                                                         
Query: 321   tgtcacttcttcttcctttggtgccttccctagaggttctactggtcagtggattctggt 380
             |||||| |||||||||||||||||||| ||||||||||||  |||||| ||||| || ||
Sbjct: 10818 tgtcacctcttcttcctttggtgcctttcctagaggttctggtggtcaatggatactcgt 10759

                                                                         
Query: 381   ggatgttcttcgtggttcttctactgagctagttagtgcactttgctggaaacctgatgg 440
             |||  |||| |||||||||||| ||||||||||||| |||||||| ||||||||||||||
Sbjct: 10758 ggacattctccgtggttcttctgctgagctagttagcgcactttgttggaaacctgatgg 10699

                   
Query: 441   aagata 446
             ||||||
Sbjct: 10698 aagata 10693



 Score =  115 bits (58), Expect = 2e-22
 Identities = 97/110 (88%)
 Strand = Plus / Minus

                                                                         
Query: 46    ccaaaactgctagaagaatttgataccaagaaagtaagctggaatccgcacaaacactgt 105
             ||||| |||||| ||||| |||||||| |||||||||| |||||||||||||| || || 
Sbjct: 11415 ccaaatctgctacaagaaattgatacccagaaagtaagttggaatccgcacaagcattgc 11356

                                                               
Query: 106   ttagcatttgtatctgggaaggaccaggttacggtccatgactttgagga 155
             || |||||||||||||||||| |||| ||||| || ||||||||||||||
Sbjct: 11355 ttggcatttgtatctgggaagaaccaagttacagttcatgactttgagga 11306



 Score =  113 bits (57), Expect = 8e-22
 Identities = 87/97 (89%)
 Strand = Plus / Minus

                                                                         
Query: 165   taaagaatcgtgcagtctaacaagtgaacatcaaaaggaagttaaagctattgaatggag 224
             ||||||||| | || |||||||||||| ||||||||||| ||||||||| ||||||||||
Sbjct: 11137 taaagaatcctacattctaacaagtgaccatcaaaaggatgttaaagctgttgaatggag 11078

                                                  
Query: 225   gccaaacagcgggaagatgattgcagttggctgcaag 261
             |||||| || || ||||||||||||||||| ||||||
Sbjct: 11077 gccaaatagtggaaagatgattgcagttgggtgcaag 11041



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 77/87 (88%)
 Strand = Plus / Minus

                                                                         
Query: 501   agggttgggaactcctatacgacgcggattaagtagcatatcgttggtgcggtggtcacc 560
             |||||||||||  |||||| |||| ||||||||||| ||||| || |||| |||||||||
Sbjct: 10382 agggttgggaatgcctataagacgtggattaagtagtatatcattagtgcagtggtcacc 10323

                                        
Query: 561   tagtggagattactttttgactgctaa 587
             ||||||||||||| |||| ||||||||
Sbjct: 10322 tagtggagattaccttttaactgctaa 10296



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 60/65 (92%)
 Strand = Plus / Minus

                                                                         
Query: 592   gatggaacttttcacttatgggagaccaacacatggacgtcagaaccctggtcttcatcc 651
             ||||||||||||||||||||||| || || ||||||||||||||||| ||||||||||| 
Sbjct: 10216 gatggaacttttcacttatgggaaacaaatacatggacgtcagaaccatggtcttcatct 10157

                  
Query: 652   aatgg 656
             |||||
Sbjct: 10156 aatgg 10152



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 52/60 (86%)
 Strand = Plus / Minus

                                                                         
Query: 444   atacttggcctcggcctcttgtaatggccagtcattcacaatttgggatgtttctgaagg 503
             ||||||||  || |||||||||||| |||  ||||||||||||||||| |||||| ||||
Sbjct: 10526 atacttggtgtccgcctcttgtaatagcccatcattcacaatttgggacgtttctcaagg 10467



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                  
Query: 2     ccatagccgagtccttcaagcaaatgctcttcccttc 38
             ||||||| ||||||||||| |||||| ||||||||||
Sbjct: 11656 ccatagctgagtccttcaaacaaatgatcttcccttc 11620



to top

>gb|AC123516.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0035B18,
              complete sequence
          Length = 123425

 Score =  242 bits (122), Expect = 1e-60
 Identities = 170/186 (91%)
 Strand = Plus / Minus

                                                                          
Query: 261    gggaggtatatgcctctggtcagcatcatatcctggcaatgttgcatccgtgaaatctgg 320
              |||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 115137 gggagggatatgcctctggtcagcatcatatcctggcaacgttgcatctgtgaaatctgg 115078

                                                                          
Query: 321    tgtcacttcttcttcctttggtgccttccctagaggttctactggtcagtggattctggt 380
              |||||| |||||||||||||||||||| ||||||||||||  |||||| ||||| || ||
Sbjct: 115077 tgtcacctcttcttcctttggtgcctttcctagaggttctggtggtcaatggatactcgt 115018

                                                                          
Query: 381    ggatgttcttcgtggttcttctactgagctagttagtgcactttgctggaaacctgatgg 440
              |||  |||| |||||||||||| ||||||||||||| |||||||| ||||||||||||||
Sbjct: 115017 ggacattctccgtggttcttctgctgagctagttagcgcactttgttggaaacctgatgg 114958

                    
Query: 441    aagata 446
              ||||||
Sbjct: 114957 aagata 114952



 Score =  115 bits (58), Expect = 2e-22
 Identities = 97/110 (88%)
 Strand = Plus / Minus

                                                                          
Query: 46     ccaaaactgctagaagaatttgataccaagaaagtaagctggaatccgcacaaacactgt 105
              ||||| |||||| ||||| |||||||| |||||||||| |||||||||||||| || || 
Sbjct: 115674 ccaaatctgctacaagaaattgatacccagaaagtaagttggaatccgcacaagcattgc 115615

                                                                
Query: 106    ttagcatttgtatctgggaaggaccaggttacggtccatgactttgagga 155
              || |||||||||||||||||| |||| ||||| || ||||||||||||||
Sbjct: 115614 ttggcatttgtatctgggaagaaccaagttacagttcatgactttgagga 115565



 Score =  113 bits (57), Expect = 8e-22
 Identities = 87/97 (89%)
 Strand = Plus / Minus

                                                                          
Query: 165    taaagaatcgtgcagtctaacaagtgaacatcaaaaggaagttaaagctattgaatggag 224
              ||||||||| | || |||||||||||| ||||||||||| ||||||||| ||||||||||
Sbjct: 115396 taaagaatcctacattctaacaagtgaccatcaaaaggatgttaaagctgttgaatggag 115337

                                                   
Query: 225    gccaaacagcgggaagatgattgcagttggctgcaag 261
              |||||| || || ||||||||||||||||| ||||||
Sbjct: 115336 gccaaatagtggaaagatgattgcagttgggtgcaag 115300



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 77/87 (88%)
 Strand = Plus / Minus

                                                                          
Query: 501    agggttgggaactcctatacgacgcggattaagtagcatatcgttggtgcggtggtcacc 560
              |||||||||||  |||||| |||| ||||||||||| ||||| || |||| |||||||||
Sbjct: 114641 agggttgggaatgcctataagacgtggattaagtagtatatcattagtgcagtggtcacc 114582

                                         
Query: 561    tagtggagattactttttgactgctaa 587
              ||||||||||||| |||| ||||||||
Sbjct: 114581 tagtggagattaccttttaactgctaa 114555



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 60/65 (92%)
 Strand = Plus / Minus

                                                                          
Query: 592    gatggaacttttcacttatgggagaccaacacatggacgtcagaaccctggtcttcatcc 651
              ||||||||||||||||||||||| || || ||||||||||||||||| ||||||||||| 
Sbjct: 114475 gatggaacttttcacttatgggaaacaaatacatggacgtcagaaccatggtcttcatct 114416

                   
Query: 652    aatgg 656
              |||||
Sbjct: 114415 aatgg 114411



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 52/60 (86%)
 Strand = Plus / Minus

                                                                          
Query: 444    atacttggcctcggcctcttgtaatggccagtcattcacaatttgggatgtttctgaagg 503
              ||||||||  || |||||||||||| |||  ||||||||||||||||| |||||| ||||
Sbjct: 114785 atacttggtgtccgcctcttgtaatagcccatcattcacaatttgggacgtttctcaagg 114726



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                   
Query: 2      ccatagccgagtccttcaagcaaatgctcttcccttc 38
              ||||||| ||||||||||| |||||| ||||||||||
Sbjct: 115915 ccatagctgagtccttcaaacaaatgatcttcccttc 115879



to top

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score =  242 bits (122), Expect = 1e-60
 Identities = 170/186 (91%)
 Strand = Plus / Minus

                                                                           
Query: 261     gggaggtatatgcctctggtcagcatcatatcctggcaatgttgcatccgtgaaatctgg 320
               |||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 1496342 gggagggatatgcctctggtcagcatcatatcctggcaacgttgcatctgtgaaatctgg 1496283

                                                                           
Query: 321     tgtcacttcttcttcctttggtgccttccctagaggttctactggtcagtggattctggt 380
               |||||| |||||||||||||||||||| ||||||||||||  |||||| ||||| || ||
Sbjct: 1496282 tgtcacctcttcttcctttggtgcctttcctagaggttctggtggtcaatggatactcgt 1496223

                                                                           
Query: 381     ggatgttcttcgtggttcttctactgagctagttagtgcactttgctggaaacctgatgg 440
               |||  |||| |||||||||||| ||||||||||||| |||||||| ||||||||||||||
Sbjct: 1496222 ggacattctccgtggttcttctgctgagctagttagcgcactttgttggaaacctgatgg 1496163

                     
Query: 441     aagata 446
               ||||||
Sbjct: 1496162 aagata 1496157



 Score =  115 bits (58), Expect = 2e-22
 Identities = 97/110 (88%)
 Strand = Plus / Minus

                                                                           
Query: 46      ccaaaactgctagaagaatttgataccaagaaagtaagctggaatccgcacaaacactgt 105
               ||||| |||||| ||||| |||||||| |||||||||| |||||||||||||| || || 
Sbjct: 1496879 ccaaatctgctacaagaaattgatacccagaaagtaagttggaatccgcacaagcattgc 1496820

                                                                 
Query: 106     ttagcatttgtatctgggaaggaccaggttacggtccatgactttgagga 155
               || |||||||||||||||||| |||| ||||| || ||||||||||||||
Sbjct: 1496819 ttggcatttgtatctgggaagaaccaagttacagttcatgactttgagga 1496770



 Score =  113 bits (57), Expect = 8e-22
 Identities = 87/97 (89%)
 Strand = Plus / Minus

                                                                           
Query: 165     taaagaatcgtgcagtctaacaagtgaacatcaaaaggaagttaaagctattgaatggag 224
               ||||||||| | || |||||||||||| ||||||||||| ||||||||| ||||||||||
Sbjct: 1496601 taaagaatcctacattctaacaagtgaccatcaaaaggatgttaaagctgttgaatggag 1496542

                                                    
Query: 225     gccaaacagcgggaagatgattgcagttggctgcaag 261
               |||||| || || ||||||||||||||||| ||||||
Sbjct: 1496541 gccaaatagtggaaagatgattgcagttgggtgcaag 1496505



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 77/87 (88%)
 Strand = Plus / Minus

                                                                           
Query: 501     agggttgggaactcctatacgacgcggattaagtagcatatcgttggtgcggtggtcacc 560
               |||||||||||  |||||| |||| ||||||||||| ||||| || |||| |||||||||
Sbjct: 1495846 agggttgggaatgcctataagacgtggattaagtagtatatcattagtgcagtggtcacc 1495787

                                          
Query: 561     tagtggagattactttttgactgctaa 587
               ||||||||||||| |||| ||||||||
Sbjct: 1495786 tagtggagattaccttttaactgctaa 1495760



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 60/65 (92%)
 Strand = Plus / Minus

                                                                           
Query: 592     gatggaacttttcacttatgggagaccaacacatggacgtcagaaccctggtcttcatcc 651
               ||||||||||||||||||||||| || || ||||||||||||||||| ||||||||||| 
Sbjct: 1495680 gatggaacttttcacttatgggaaacaaatacatggacgtcagaaccatggtcttcatct 1495621

                    
Query: 652     aatgg 656
               |||||
Sbjct: 1495620 aatgg 1495616



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 52/60 (86%)
 Strand = Plus / Minus

                                                                           
Query: 444     atacttggcctcggcctcttgtaatggccagtcattcacaatttgggatgtttctgaagg 503
               ||||||||  || |||||||||||| |||  ||||||||||||||||| |||||| ||||
Sbjct: 1495990 atacttggtgtccgcctcttgtaatagcccatcattcacaatttgggacgtttctcaagg 1495931



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                    
Query: 2       ccatagccgagtccttcaagcaaatgctcttcccttc 38
               ||||||| ||||||||||| |||||| ||||||||||
Sbjct: 1497120 ccatagctgagtccttcaaacaaatgatcttcccttc 1497084



to top

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  242 bits (122), Expect = 1e-60
 Identities = 170/186 (91%)
 Strand = Plus / Minus

                                                                           
Query: 261     gggaggtatatgcctctggtcagcatcatatcctggcaatgttgcatccgtgaaatctgg 320
               |||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 1494063 gggagggatatgcctctggtcagcatcatatcctggcaacgttgcatctgtgaaatctgg 1494004

                                                                           
Query: 321     tgtcacttcttcttcctttggtgccttccctagaggttctactggtcagtggattctggt 380
               |||||| |||||||||||||||||||| ||||||||||||  |||||| ||||| || ||
Sbjct: 1494003 tgtcacctcttcttcctttggtgcctttcctagaggttctggtggtcaatggatactcgt 1493944

                                                                           
Query: 381     ggatgttcttcgtggttcttctactgagctagttagtgcactttgctggaaacctgatgg 440
               |||  |||| |||||||||||| ||||||||||||| |||||||| ||||||||||||||
Sbjct: 1493943 ggacattctccgtggttcttctgctgagctagttagcgcactttgttggaaacctgatgg 1493884

                     
Query: 441     aagata 446
               ||||||
Sbjct: 1493883 aagata 1493878



 Score =  115 bits (58), Expect = 2e-22
 Identities = 97/110 (88%)
 Strand = Plus / Minus

                                                                           
Query: 46      ccaaaactgctagaagaatttgataccaagaaagtaagctggaatccgcacaaacactgt 105
               ||||| |||||| ||||| |||||||| |||||||||| |||||||||||||| || || 
Sbjct: 1494600 ccaaatctgctacaagaaattgatacccagaaagtaagttggaatccgcacaagcattgc 1494541

                                                                 
Query: 106     ttagcatttgtatctgggaaggaccaggttacggtccatgactttgagga 155
               || |||||||||||||||||| |||| ||||| || ||||||||||||||
Sbjct: 1494540 ttggcatttgtatctgggaagaaccaagttacagttcatgactttgagga 1494491



 Score =  113 bits (57), Expect = 8e-22
 Identities = 87/97 (89%)
 Strand = Plus / Minus

                                                                           
Query: 165     taaagaatcgtgcagtctaacaagtgaacatcaaaaggaagttaaagctattgaatggag 224
               ||||||||| | || |||||||||||| ||||||||||| ||||||||| ||||||||||
Sbjct: 1494322 taaagaatcctacattctaacaagtgaccatcaaaaggatgttaaagctgttgaatggag 1494263

                                                    
Query: 225     gccaaacagcgggaagatgattgcagttggctgcaag 261
               |||||| || || ||||||||||||||||| ||||||
Sbjct: 1494262 gccaaatagtggaaagatgattgcagttgggtgcaag 1494226



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 77/87 (88%)
 Strand = Plus / Minus

                                                                           
Query: 501     agggttgggaactcctatacgacgcggattaagtagcatatcgttggtgcggtggtcacc 560
               |||||||||||  |||||| |||| ||||||||||| ||||| || |||| |||||||||
Sbjct: 1493567 agggttgggaatgcctataagacgtggattaagtagtatatcattagtgcagtggtcacc 1493508

                                          
Query: 561     tagtggagattactttttgactgctaa 587
               ||||||||||||| |||| ||||||||
Sbjct: 1493507 tagtggagattaccttttaactgctaa 1493481



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 60/65 (92%)
 Strand = Plus / Minus

                                                                           
Query: 592     gatggaacttttcacttatgggagaccaacacatggacgtcagaaccctggtcttcatcc 651
               ||||||||||||||||||||||| || || ||||||||||||||||| ||||||||||| 
Sbjct: 1493401 gatggaacttttcacttatgggaaacaaatacatggacgtcagaaccatggtcttcatct 1493342

                    
Query: 652     aatgg 656
               |||||
Sbjct: 1493341 aatgg 1493337



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 52/60 (86%)
 Strand = Plus / Minus

                                                                           
Query: 444     atacttggcctcggcctcttgtaatggccagtcattcacaatttgggatgtttctgaagg 503
               ||||||||  || |||||||||||| |||  ||||||||||||||||| |||||| ||||
Sbjct: 1493711 atacttggtgtccgcctcttgtaatagcccatcattcacaatttgggacgtttctcaagg 1493652



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                    
Query: 2       ccatagccgagtccttcaagcaaatgctcttcccttc 38
               ||||||| ||||||||||| |||||| ||||||||||
Sbjct: 1494841 ccatagctgagtccttcaaacaaatgatcttcccttc 1494805



to top

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score =  234 bits (118), Expect = 3e-58
 Identities = 169/186 (90%)
 Strand = Plus / Minus

                                                                           
Query: 261     gggaggtatatgcctctggtcagcatcatatcctggcaatgttgcatccgtgaaatctgg 320
               |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1407088 gggagggatatgcctctggtcagcatcatatcctggcaatgttgcatctgtgaaatctgg 1407029

                                                                           
Query: 321     tgtcacttcttcttcctttggtgccttccctagaggttctactggtcagtggattctggt 380
               |||||| |||||||| ||||||||||| |||||||||||   |||||| ||||| || ||
Sbjct: 1407028 tgtcacctcttcttcttttggtgcctttcctagaggttccggtggtcaatggatactcgt 1406969

                                                                           
Query: 381     ggatgttcttcgtggttcttctactgagctagttagtgcactttgctggaaacctgatgg 440
               |||  |||| |||||||||||| ||||||||||||| |||||||| ||||||||||||||
Sbjct: 1406968 ggacattctccgtggttcttctgctgagctagttagcgcactttgttggaaacctgatgg 1406909

                     
Query: 441     aagata 446
               ||||||
Sbjct: 1406908 aagata 1406903



 Score =  109 bits (55), Expect = 1e-20
 Identities = 79/87 (90%)
 Strand = Plus / Minus

                                                                           
Query: 501     agggttgggaactcctatacgacgcggattaagtagcatatcgttggtgcggtggtcacc 560
               |||||||||||| |||||| |||| ||||||||||| ||||| || ||||||||||||||
Sbjct: 1406597 agggttgggaacgcctataagacgtggattaagtagtatatcattagtgcggtggtcacc 1406538

                                          
Query: 561     tagtggagattactttttgactgctaa 587
               ||||||||||||| |||| ||||||||
Sbjct: 1406537 tagtggagattaccttttaactgctaa 1406511



 Score =  107 bits (54), Expect = 5e-20
 Identities = 96/110 (87%)
 Strand = Plus / Minus

                                                                           
Query: 46      ccaaaactgctagaagaatttgataccaagaaagtaagctggaatccgcacaaacactgt 105
               ||||| |||||| ||||| |||||||| |||||||||| |||||||| ||||| || || 
Sbjct: 1407585 ccaaatctgctacaagaaattgatacccagaaagtaagttggaatcctcacaagcattgc 1407526

                                                                 
Query: 106     ttagcatttgtatctgggaaggaccaggttacggtccatgactttgagga 155
               || |||||||||||||||||| |||| ||||| || ||||||||||||||
Sbjct: 1407525 ttggcatttgtatctgggaagaaccaagttacagttcatgactttgagga 1407476



 Score =  105 bits (53), Expect = 2e-19
 Identities = 86/97 (88%)
 Strand = Plus / Minus

                                                                           
Query: 165     taaagaatcgtgcagtctaacaagtgaacatcaaaaggaagttaaagctattgaatggag 224
               ||||||||| | || |||||||||||| ||||||||||| ||||||||| ||||||||||
Sbjct: 1407307 taaagaatcctacattctaacaagtgaccatcaaaaggatgttaaagctgttgaatggag 1407248

                                                    
Query: 225     gccaaacagcgggaagatgattgcagttggctgcaag 261
               |||||| || || ||| ||||||||||||| ||||||
Sbjct: 1407247 gccaaatagtggaaaggtgattgcagttgggtgcaag 1407211



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 84/97 (86%)
 Strand = Plus / Minus

                                                                           
Query: 165     taaagaatcgtgcagtctaacaagtgaacatcaaaaggaagttaaagctattgaatggag 224
               ||||||||| | || |||||||||||| |  ||||| || ||||||||| ||||||||||
Sbjct: 1444750 taaagaatcctacattctaacaagtgaccgacaaaacgatgttaaagctgttgaatggag 1444691

                                                    
Query: 225     gccaaacagcgggaagatgattgcagttggctgcaag 261
               |||||| || |  ||||||||||||||||||||||||
Sbjct: 1444690 gccaaatagtgaaaagatgattgcagttggctgcaag 1444654



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 60/65 (92%)
 Strand = Plus / Minus

                                                                           
Query: 592     gatggaacttttcacttatgggagaccaacacatggacgtcagaaccctggtcttcatcc 651
               ||||||||||||||||||||||| || || ||||||||||||||||| ||||||||||| 
Sbjct: 1406431 gatggaacttttcacttatgggaaacaaatacatggacgtcagaaccatggtcttcatct 1406372

                    
Query: 652     aatgg 656
               |||||
Sbjct: 1406371 aatgg 1406367



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 57/63 (90%)
 Strand = Plus / Plus

                                                                           
Query: 259     aagggaggtatatgcctctggtcagcatcatatcctggcaatgttgcatccgtgaaatct 318
               |||||||| ||||||||||||||||| ||||||| || |||||||||||  |||||||||
Sbjct: 1512855 aagggaggaatatgcctctggtcagcgtcatatcatgacaatgttgcatttgtgaaatct 1512914

                  
Query: 319     ggt 321
               |||
Sbjct: 1512915 ggt 1512917



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                           
Query: 2       ccatagccgagtccttcaagcaaatgctcttcccttcttgcaat 45
               ||||||| ||||||||||| ||||||||||||||||| ||||||
Sbjct: 1407829 ccatagctgagtccttcaaacaaatgctcttcccttcgtgcaat 1407786



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 53/60 (88%)
 Strand = Plus / Minus

                                                                           
Query: 444     atacttggcctcggcctcttgtaatggccagtcattcacaatttgggatgtttctgaagg 503
               ||||||||  || |||||||||||| |||  |||||||||||||||||||||||| ||||
Sbjct: 1406741 atacttggtatctgcctcttgtaatagcccatcattcacaatttgggatgtttctcaagg 1406682



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                    
Query: 2       ccatagccgagtccttcaagcaaatgctcttcccttc 38
               ||||||| ||||||||||| |||||||||||||||||
Sbjct: 1444915 ccatagctgagtccttcaaacaaatgctcttcccttc 1444879



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                    
Query: 290     atcctggcaatgttgcatccgtgaaatctggtgtcac 326
               ||||||||||||||||||| ||||||||| |||||||
Sbjct: 1444539 atcctggcaatgttgcatctgtgaaatctagtgtcac 1444503



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                     
Query: 5       tagccgagtccttcaagcaaatgctcttcccttcttgc 42
               |||| ||||||||||| |||||||| ||||||||||||
Sbjct: 1512682 tagctgagtccttcaaacaaatgctattcccttcttgc 1512719



to top

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  234 bits (118), Expect = 3e-58
 Identities = 169/186 (90%)
 Strand = Plus / Minus

                                                                           
Query: 261     gggaggtatatgcctctggtcagcatcatatcctggcaatgttgcatccgtgaaatctgg 320
               |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1407088 gggagggatatgcctctggtcagcatcatatcctggcaatgttgcatctgtgaaatctgg 1407029

                                                                           
Query: 321     tgtcacttcttcttcctttggtgccttccctagaggttctactggtcagtggattctggt 380
               |||||| |||||||| ||||||||||| |||||||||||   |||||| ||||| || ||
Sbjct: 1407028 tgtcacctcttcttcttttggtgcctttcctagaggttccggtggtcaatggatactcgt 1406969

                                                                           
Query: 381     ggatgttcttcgtggttcttctactgagctagttagtgcactttgctggaaacctgatgg 440
               |||  |||| |||||||||||| ||||||||||||| |||||||| ||||||||||||||
Sbjct: 1406968 ggacattctccgtggttcttctgctgagctagttagcgcactttgttggaaacctgatgg 1406909

                     
Query: 441     aagata 446
               ||||||
Sbjct: 1406908 aagata 1406903



 Score =  109 bits (55), Expect = 1e-20
 Identities = 79/87 (90%)
 Strand = Plus / Minus

                                                                           
Query: 501     agggttgggaactcctatacgacgcggattaagtagcatatcgttggtgcggtggtcacc 560
               |||||||||||| |||||| |||| ||||||||||| ||||| || ||||||||||||||
Sbjct: 1406597 agggttgggaacgcctataagacgtggattaagtagtatatcattagtgcggtggtcacc 1406538

                                          
Query: 561     tagtggagattactttttgactgctaa 587
               ||||||||||||| |||| ||||||||
Sbjct: 1406537 tagtggagattaccttttaactgctaa 1406511



 Score =  107 bits (54), Expect = 5e-20
 Identities = 96/110 (87%)
 Strand = Plus / Minus

                                                                           
Query: 46      ccaaaactgctagaagaatttgataccaagaaagtaagctggaatccgcacaaacactgt 105
               ||||| |||||| ||||| |||||||| |||||||||| |||||||| ||||| || || 
Sbjct: 1407585 ccaaatctgctacaagaaattgatacccagaaagtaagttggaatcctcacaagcattgc 1407526

                                                                 
Query: 106     ttagcatttgtatctgggaaggaccaggttacggtccatgactttgagga 155
               || |||||||||||||||||| |||| ||||| || ||||||||||||||
Sbjct: 1407525 ttggcatttgtatctgggaagaaccaagttacagttcatgactttgagga 1407476



 Score =  105 bits (53), Expect = 2e-19
 Identities = 86/97 (88%)
 Strand = Plus / Minus

                                                                           
Query: 165     taaagaatcgtgcagtctaacaagtgaacatcaaaaggaagttaaagctattgaatggag 224
               ||||||||| | || |||||||||||| ||||||||||| ||||||||| ||||||||||
Sbjct: 1407307 taaagaatcctacattctaacaagtgaccatcaaaaggatgttaaagctgttgaatggag 1407248

                                                    
Query: 225     gccaaacagcgggaagatgattgcagttggctgcaag 261
               |||||| || || ||| ||||||||||||| ||||||
Sbjct: 1407247 gccaaatagtggaaaggtgattgcagttgggtgcaag 1407211



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 84/97 (86%)
 Strand = Plus / Minus

                                                                           
Query: 165     taaagaatcgtgcagtctaacaagtgaacatcaaaaggaagttaaagctattgaatggag 224
               ||||||||| | || |||||||||||| |  ||||| || ||||||||| ||||||||||
Sbjct: 1444750 taaagaatcctacattctaacaagtgaccgacaaaacgatgttaaagctgttgaatggag 1444691

                                                    
Query: 225     gccaaacagcgggaagatgattgcagttggctgcaag 261
               |||||| || |  ||||||||||||||||||||||||
Sbjct: 1444690 gccaaatagtgaaaagatgattgcagttggctgcaag 1444654



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 60/65 (92%)
 Strand = Plus / Minus

                                                                           
Query: 592     gatggaacttttcacttatgggagaccaacacatggacgtcagaaccctggtcttcatcc 651
               ||||||||||||||||||||||| || || ||||||||||||||||| ||||||||||| 
Sbjct: 1406431 gatggaacttttcacttatgggaaacaaatacatggacgtcagaaccatggtcttcatct 1406372

                    
Query: 652     aatgg 656
               |||||
Sbjct: 1406371 aatgg 1406367



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 57/63 (90%)
 Strand = Plus / Plus

                                                                           
Query: 259     aagggaggtatatgcctctggtcagcatcatatcctggcaatgttgcatccgtgaaatct 318
               |||||||| ||||||||||||||||| ||||||| || |||||||||||  |||||||||
Sbjct: 1512855 aagggaggaatatgcctctggtcagcgtcatatcatgacaatgttgcatttgtgaaatct 1512914

                  
Query: 319     ggt 321
               |||
Sbjct: 1512915 ggt 1512917



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                           
Query: 2       ccatagccgagtccttcaagcaaatgctcttcccttcttgcaat 45
               ||||||| ||||||||||| ||||||||||||||||| ||||||
Sbjct: 1407829 ccatagctgagtccttcaaacaaatgctcttcccttcgtgcaat 1407786



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 53/60 (88%)
 Strand = Plus / Minus

                                                                           
Query: 444     atacttggcctcggcctcttgtaatggccagtcattcacaatttgggatgtttctgaagg 503
               ||||||||  || |||||||||||| |||  |||||||||||||||||||||||| ||||
Sbjct: 1406741 atacttggtatctgcctcttgtaatagcccatcattcacaatttgggatgtttctcaagg 1406682



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                    
Query: 2       ccatagccgagtccttcaagcaaatgctcttcccttc 38
               ||||||| ||||||||||| |||||||||||||||||
Sbjct: 1444915 ccatagctgagtccttcaaacaaatgctcttcccttc 1444879



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                    
Query: 290     atcctggcaatgttgcatccgtgaaatctggtgtcac 326
               ||||||||||||||||||| ||||||||| |||||||
Sbjct: 1444539 atcctggcaatgttgcatctgtgaaatctagtgtcac 1444503



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                     
Query: 5       tagccgagtccttcaagcaaatgctcttcccttcttgc 42
               |||| ||||||||||| |||||||| ||||||||||||
Sbjct: 1512682 tagctgagtccttcaaacaaatgctattcccttcttgc 1512719



to top

>emb|BX000507.2|CNS08CDX Oryza sativa chromosome 12, . BAC OJ1003_C01 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 157453

 Score =  234 bits (118), Expect = 3e-58
 Identities = 169/186 (90%)
 Strand = Plus / Plus

                                                                         
Query: 261   gggaggtatatgcctctggtcagcatcatatcctggcaatgttgcatccgtgaaatctgg 320
             |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 22081 gggagggatatgcctctggtcagcatcatatcctggcaatgttgcatctgtgaaatctgg 22140

                                                                         
Query: 321   tgtcacttcttcttcctttggtgccttccctagaggttctactggtcagtggattctggt 380
             |||||| |||||||| ||||||||||| |||||||||||   |||||| ||||| || ||
Sbjct: 22141 tgtcacctcttcttcttttggtgcctttcctagaggttccggtggtcaatggatactcgt 22200

                                                                         
Query: 381   ggatgttcttcgtggttcttctactgagctagttagtgcactttgctggaaacctgatgg 440
             |||  |||| |||||||||||| ||||||||||||| |||||||| ||||||||||||||
Sbjct: 22201 ggacattctccgtggttcttctgctgagctagttagcgcactttgttggaaacctgatgg 22260

                   
Query: 441   aagata 446
             ||||||
Sbjct: 22261 aagata 22266



 Score =  109 bits (55), Expect = 1e-20
 Identities = 79/87 (90%)
 Strand = Plus / Plus

                                                                         
Query: 501   agggttgggaactcctatacgacgcggattaagtagcatatcgttggtgcggtggtcacc 560
             |||||||||||| |||||| |||| ||||||||||| ||||| || ||||||||||||||
Sbjct: 22572 agggttgggaacgcctataagacgtggattaagtagtatatcattagtgcggtggtcacc 22631

                                        
Query: 561   tagtggagattactttttgactgctaa 587
             ||||||||||||| |||| ||||||||
Sbjct: 22632 tagtggagattaccttttaactgctaa 22658



 Score =  107 bits (54), Expect = 5e-20
 Identities = 96/110 (87%)
 Strand = Plus / Plus

                                                                         
Query: 46    ccaaaactgctagaagaatttgataccaagaaagtaagctggaatccgcacaaacactgt 105
             ||||| |||||| ||||| |||||||| |||||||||| |||||||| ||||| || || 
Sbjct: 21584 ccaaatctgctacaagaaattgatacccagaaagtaagttggaatcctcacaagcattgc 21643

                                                               
Query: 106   ttagcatttgtatctgggaaggaccaggttacggtccatgactttgagga 155
             || |||||||||||||||||| |||| ||||| || ||||||||||||||
Sbjct: 21644 ttggcatttgtatctgggaagaaccaagttacagttcatgactttgagga 21693



 Score =  105 bits (53), Expect = 2e-19
 Identities = 86/97 (88%)
 Strand = Plus / Plus

                                                                         
Query: 165   taaagaatcgtgcagtctaacaagtgaacatcaaaaggaagttaaagctattgaatggag 224
             ||||||||| | || |||||||||||| ||||||||||| ||||||||| ||||||||||
Sbjct: 21862 taaagaatcctacattctaacaagtgaccatcaaaaggatgttaaagctgttgaatggag 21921

                                                  
Query: 225   gccaaacagcgggaagatgattgcagttggctgcaag 261
             |||||| || || ||| ||||||||||||| ||||||
Sbjct: 21922 gccaaatagtggaaaggtgattgcagttgggtgcaag 21958



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 60/65 (92%)
 Strand = Plus / Plus

                                                                         
Query: 592   gatggaacttttcacttatgggagaccaacacatggacgtcagaaccctggtcttcatcc 651
             ||||||||||||||||||||||| || || ||||||||||||||||| ||||||||||| 
Sbjct: 22738 gatggaacttttcacttatgggaaacaaatacatggacgtcagaaccatggtcttcatct 22797

                  
Query: 652   aatgg 656
             |||||
Sbjct: 22798 aatgg 22802



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 53/60 (88%)
 Strand = Plus / Plus

                                                                         
Query: 444   atacttggcctcggcctcttgtaatggccagtcattcacaatttgggatgtttctgaagg 503
             ||||||||  || |||||||||||| |||  |||||||||||||||||||||||| ||||
Sbjct: 22428 atacttggtatctgcctcttgtaatagcccatcattcacaatttgggatgtttctcaagg 22487



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 41/44 (93%)
 Strand = Plus / Plus

                                                         
Query: 2     ccatagccgagtccttcaagcaaatgctcttcccttcttgcaat 45
             ||||||| ||||||||||| ||||||||||||||||| ||||||
Sbjct: 21340 ccatagctgagtccttcaaacaaatgctcttcccttcgtgcaat 21383



to top

>gb|AC169378.2| Sorghum bicolor clone SB_BBc0007L02, complete sequence
          Length = 138518

 Score =  194 bits (98), Expect = 3e-46
 Identities = 164/186 (88%)
 Strand = Plus / Plus

                                                                          
Query: 261    gggaggtatatgcctctggtcagcatcatatcctggcaatgttgcatccgtgaaatctgg 320
              |||||| |||||||||||||| ||||||||||||||||||||| | | | ||||| ||||
Sbjct: 110101 gggagggatatgcctctggtcggcatcatatcctggcaatgttccgttcatgaaacctgg 110160

                                                                          
Query: 321    tgtcacttcttcttcctttggtgccttccctagaggttctactggtcagtggattctggt 380
                |||| || ||||||| | ||||||||||||||||||||  |||||||||||| |||||
Sbjct: 110161 catcacctcatcttcctctagtgccttccctagaggttctggtggtcagtggatactggt 110220

                                                                          
Query: 381    ggatgttcttcgtggttcttctactgagctagttagtgcactttgctggaaacctgatgg 440
              ||||||||||||||| |||||| |||||||  ||||||||||||| ||||||||||||||
Sbjct: 110221 ggatgttcttcgtggctcttctgctgagctcattagtgcactttgttggaaacctgatgg 110280

                    
Query: 441    aagata 446
               |||||
Sbjct: 110281 gagata 110286



 Score =  111 bits (56), Expect = 3e-21
 Identities = 95/108 (87%)
 Strand = Plus / Plus

                                                                          
Query: 53     tgctagaagaatttgataccaagaaagtaagctggaatccgcacaaacactgtttagcat 112
              |||||||||||||||| ||| |||||||||| ||||||||  |||| || || |||||||
Sbjct: 109677 tgctagaagaatttgacacccagaaagtaagttggaatccatacaagcattgcttagcat 109736

                                                              
Query: 113    ttgtatctgggaaggaccaggttacggtccatgactttgaggattcag 160
              |||| ||||| ||| |||||||||| ||||| ||||||||||||||||
Sbjct: 109737 ttgtgtctggcaagaaccaggttactgtccaagactttgaggattcag 109784



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 90/104 (86%)
 Strand = Plus / Plus

                                                                          
Query: 158    cagatggtaaagaatcgtgcagtctaacaagtgaacatcaaaaggaagttaaagctattg 217
              |||||| ||||||| | |||| | |||||||||| ||||||| ||| ||||| ||| |||
Sbjct: 109887 cagatgctaaagaaccatgcattttaacaagtgaccatcaaacggatgttaaggctgttg 109946

                                                          
Query: 218    aatggaggccaaacagcgggaagatgattgcagttggctgcaag 261
              | ||||| ||||| |||||||||||||||||||||| |||||||
Sbjct: 109947 agtggagaccaaatagcgggaagatgattgcagttgcctgcaag 109990



 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 78/90 (86%)
 Strand = Plus / Plus

                                                                          
Query: 501    agggttgggaactcctatacgacgcggattaagtagcatatcgttggtgcggtggtcacc 560
              ||||||||||||||||||||| || |||||||| |  ||||| || ||||||||||||||
Sbjct: 110889 agggttgggaactcctatacggcgtggattaagcaatatatcattagtgcggtggtcacc 110948

                                            
Query: 561    tagtggagattactttttgactgctaaatt 590
               |||||||||||| || |  ||||||||||
Sbjct: 110949 cagtggagattaccttctagctgctaaatt 110978



 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 58/65 (89%)
 Strand = Plus / Plus

                                                                          
Query: 592    gatggaacttttcacttatgggagaccaacacatggacgtcagaaccctggtcttcatcc 651
              ||||| || |||||||| |||||||| ||||||||||| ||||||||||||||||| || 
Sbjct: 111059 gatggtacatttcacttctgggagacgaacacatggacttcagaaccctggtcttcgtct 111118

                   
Query: 652    aatgg 656
              |||||
Sbjct: 111119 aatgg 111123



 Score = 40.1 bits (20), Expect = 9.2
 Identities = 50/60 (83%)
 Strand = Plus / Plus

                                                                          
Query: 444    atacttggcctcggcctcttgtaatggccagtcattcacaatttgggatgtttctgaagg 503
              ||||||||| || ||||| |||||| | |  || ||||||||||||||||| ||| ||||
Sbjct: 110740 atacttggcatctgcctcatgtaatagtccatctttcacaatttgggatgtgtctcaagg 110799



to top

>gb|AY023576.1| Oryza sativa microsatellite MRG5901 containing (TTA)X18, closest to
           marker R2954, genomic sequence
          Length = 254

 Score =  135 bits (68), Expect = 2e-28
 Identities = 86/92 (93%)
 Strand = Plus / Plus

                                                                       
Query: 261 gggaggtatatgcctctggtcagcatcatatcctggcaatgttgcatccgtgaaatctgg 320
           |||||| ||||||||||||||||||||||||||| |||| |||||||| |||||||||||
Sbjct: 162 gggagggatatgcctctggtcagcatcatatcctcgcaacgttgcatctgtgaaatctgg 221

                                           
Query: 321 tgtcacttcttcttcctttggtgccttcccta 352
           |||||| |||||||||||||||||||| ||||
Sbjct: 222 tgtcacctcttcttcctttggtgcctttccta 253



to top

>emb|BX000558.5|CNS08CE5 Oryza sativa chromosome 12, . Partial sequence from BAC OJ1227_F03 of
             library Monsanto from chromosome 12 of cultivar Nipponbare
             of ssp. japonica of Oryza sativa (rice), complete sequence
          Length = 28516

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 84/97 (86%)
 Strand = Plus / Minus

                                                                         
Query: 165   taaagaatcgtgcagtctaacaagtgaacatcaaaaggaagttaaagctattgaatggag 224
             ||||||||| | || |||||||||||| |  ||||| || ||||||||| ||||||||||
Sbjct: 25942 taaagaatcctacattctaacaagtgaccgacaaaacgatgttaaagctgttgaatggag 25883

                                                  
Query: 225   gccaaacagcgggaagatgattgcagttggctgcaag 261
             |||||| || |  ||||||||||||||||||||||||
Sbjct: 25882 gccaaatagtgaaaagatgattgcagttggctgcaag 25846



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                  
Query: 2     ccatagccgagtccttcaagcaaatgctcttcccttc 38
             ||||||| ||||||||||| |||||||||||||||||
Sbjct: 26107 ccatagctgagtccttcaaacaaatgctcttcccttc 26071



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                  
Query: 290   atcctggcaatgttgcatccgtgaaatctggtgtcac 326
             ||||||||||||||||||| ||||||||| |||||||
Sbjct: 25731 atcctggcaatgttgcatctgtgaaatctagtgtcac 25695



to top

>emb|BX000498.1|CNS08CDO Oryza sativa chromosome 12, . BAC OSJNBa0009F13 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 183385

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 84/97 (86%)
 Strand = Plus / Plus

                                                                          
Query: 165    taaagaatcgtgcagtctaacaagtgaacatcaaaaggaagttaaagctattgaatggag 224
              ||||||||| | || |||||||||||| |  ||||| || ||||||||| ||||||||||
Sbjct: 180982 taaagaatcctacattctaacaagtgaccgacaaaacgatgttaaagctgttgaatggag 181041

                                                   
Query: 225    gccaaacagcgggaagatgattgcagttggctgcaag 261
              |||||| || |  ||||||||||||||||||||||||
Sbjct: 181042 gccaaatagtgaaaagatgattgcagttggctgcaag 181078



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 57/63 (90%)
 Strand = Plus / Minus

                                                                          
Query: 259    aagggaggtatatgcctctggtcagcatcatatcctggcaatgttgcatccgtgaaatct 318
              |||||||| ||||||||||||||||| ||||||| || |||||||||||  |||||||||
Sbjct: 112877 aagggaggaatatgcctctggtcagcgtcatatcatgacaatgttgcatttgtgaaatct 112818

                 
Query: 319    ggt 321
              |||
Sbjct: 112817 ggt 112815



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                   
Query: 290    atcctggcaatgttgcatccgtgaaatctggtgtcac 326
              ||||||||||||||||||| ||||||||| |||||||
Sbjct: 181193 atcctggcaatgttgcatctgtgaaatctagtgtcac 181229



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                   
Query: 2      ccatagccgagtccttcaagcaaatgctcttcccttc 38
              ||||||| ||||||||||| |||||||||||||||||
Sbjct: 180817 ccatagctgagtccttcaaacaaatgctcttcccttc 180853



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                    
Query: 5      tagccgagtccttcaagcaaatgctcttcccttcttgc 42
              |||| ||||||||||| |||||||| ||||||||||||
Sbjct: 113050 tagctgagtccttcaaacaaatgctattcccttcttgc 113013



to top

>gb|AC091091.2| Gallus gallus clone WAG-93J15, complete sequence
          Length = 136822

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 329   cttcttcctttggtgccttccct 351
             |||||||||||||||||||||||
Sbjct: 96419 cttcttcctttggtgccttccct 96397



to top

>emb|AJ720875.1| Gallus gallus mRNA for hypothetical protein, clone 28j4
          Length = 4160

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 329  cttcttcctttggtgccttccct 351
            |||||||||||||||||||||||
Sbjct: 1858 cttcttcctttggtgccttccct 1836



to top

>gb|U67955.1| Caenorhabditis elegans cosmid C16H3, complete sequence
          Length = 21396

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 57    agaagaatttgataccaagaaa 78
             ||||||||||||||||||||||
Sbjct: 14765 agaagaatttgataccaagaaa 14744



to top

>emb|AL445590.4| Human DNA sequence from clone RP11-50D16 on chromosome 13 Contains the
             gene for a novel protein similar to stomatin peptide, gene
             FLJ12661 (FLJ23780), a novel gene, and two CpG islands,
             complete sequence
          Length = 157957

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 481   acaatttgggatgtttctgaag 502
             ||||||||||||||||||||||
Sbjct: 95790 acaatttgggatgtttctgaag 95811



to top

>ref|NM_115549.2| Arabidopsis thaliana unknown protein AT3G56900 mRNA, complete cds
          Length = 2081

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                 
Query: 610  tgggagaccaacacatggacgtcagaaccctggtctt 646
            ||||| || ||||||||||| || |||||||||||||
Sbjct: 1021 tgggaaacaaacacatggacatctgaaccctggtctt 1057



to top

>gb|AC129775.4| Mus musculus BAC clone RP23-174N20 from chromosome 3, complete sequence
          Length = 225505

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 94    cacaaacactgtttagcatttgtat 118
             |||||||||||||||| ||||||||
Sbjct: 76030 cacaaacactgtttagaatttgtat 76054



to top

>gb|AC124388.4| Mus musculus BAC clone RP24-426O7 from chromosome 13, complete
            sequence
          Length = 149152

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 106  ttagcatttgtatctgggaag 126
            |||||||||||||||||||||
Sbjct: 6749 ttagcatttgtatctgggaag 6729



to top

>gb|AC141107.5| Medicago truncatula clone mth2-34a12, complete sequence
          Length = 142659

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                       
Query: 610    tgggagaccaacacatggacgtcagaaccctggtcttcatc 650
              |||||||| ||||||||||| |||||||  ||||| |||||
Sbjct: 124460 tgggagacaaacacatggacatcagaacaatggtcatcatc 124420



to top

>emb|AL390921.1|ATT8M16 Arabidopsis thaliana DNA chromosome 3, BAC clone T8M16
          Length = 107271

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                  
Query: 610   tgggagaccaacacatggacgtcagaaccctggtctt 646
             ||||| || ||||||||||| || |||||||||||||
Sbjct: 84164 tgggaaacaaacacatggacatctgaaccctggtctt 84200



to top

>gb|AC123595.1| Homo sapiens chromosome 5 clone RP11-213H15, complete sequence
          Length = 174874

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 496    tctgaagggttgggaactcct 516
              |||||||||||||||||||||
Sbjct: 164179 tctgaagggttgggaactcct 164159



to top

>gb|AC116333.2| Homo sapiens chromosome 5 clone CTD-2242E19, complete sequence
          Length = 112119

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 282    agcatcatatcctggcaatgttgca 306
              ||||| |||||||||||||||||||
Sbjct: 108264 agcatgatatcctggcaatgttgca 108240



to top

>gb|AC093281.2| Homo sapiens chromosome 5 clone RP11-414H23, complete sequence
          Length = 167455

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 496    tctgaagggttgggaactcct 516
              |||||||||||||||||||||
Sbjct: 139751 tctgaagggttgggaactcct 139771



to top

>gb|AC149050.2| Medicago truncatula chromosome 7 BAC clone mth2-6j14, complete
            sequence
          Length = 119126

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 610  tgggagaccaacacatggacgtcagaaccctggtcttcatc 650
            |||||||| ||||||||||| |||||||  ||||| |||||
Sbjct: 3361 tgggagacaaacacatggacatcagaacaatggtcatcatc 3321



to top

>emb|BX822596.1|CNS0A5YE Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB51ZE07 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1604

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                 
Query: 610  tgggagaccaacacatggacgtcagaaccctggtctt 646
            ||||||||  |||||||||| || |||||||||||||
Sbjct: 992  tgggagacacacacatggacatctgaaccctggtctt 1028



to top

>emb|BX822954.1|CNS0A5WY Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB75ZF10 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1657

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                 
Query: 610  tgggagaccaacacatggacgtcagaaccctggtctt 646
            ||||| || ||||||||||| || |||||||||||||
Sbjct: 1053 tgggaaacaaacacatggacatctgaaccctggtctt 1089



to top

>emb|BX824632.1|CNS0A4QE Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH60ZH12 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1565

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                 
Query: 610  tgggagaccaacacatggacgtcagaaccctggtctt 646
            ||||| || ||||||||||| || |||||||||||||
Sbjct: 990  tgggaaacaaacacatggacatctgaaccctggtctt 1026



to top

>gb|BT005366.1| Arabidopsis thaliana At3g56900 mRNA, complete cds
          Length = 1344

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                
Query: 610 tgggagaccaacacatggacgtcagaaccctggtctt 646
           ||||| || ||||||||||| || |||||||||||||
Sbjct: 841 tgggaaacaaacacatggacatctgaaccctggtctt 877



to top

>gb|AC112204.2| Homo sapiens chromosome 5 clone RP11-79C6, complete sequence
          Length = 165304

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 282   agcatcatatcctggcaatgttgca 306
             ||||| |||||||||||||||||||
Sbjct: 43056 agcatgatatcctggcaatgttgca 43032



to top

>dbj|AK118686.1| Arabidopsis thaliana At3g56900 mRNA for unknown protein, complete
            cds, clone: RAFL19-95-H13
          Length = 1664

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                 
Query: 610  tgggagaccaacacatggacgtcagaaccctggtctt 646
            ||||| || ||||||||||| || |||||||||||||
Sbjct: 1021 tgggaaacaaacacatggacatctgaaccctggtctt 1057



to top

>gb|AC147473.3| Mus musculus BAC clone RP24-353P11 from 13, complete sequence
          Length = 158972

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 106   ttagcatttgtatctgggaag 126
             |||||||||||||||||||||
Sbjct: 64082 ttagcatttgtatctgggaag 64062



to top

>emb|AL731789.9| Mouse DNA sequence from clone RP23-52F6 on chromosome X, complete
              sequence
          Length = 218939

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 16     ttcaagcaaatgctcttcccttctt 40
              ||||| |||||||||||||||||||
Sbjct: 109154 ttcaaacaaatgctcttcccttctt 109130



to top

>gb|AC122563.8| Mus musculus chromosome 1, clone RP24-208F6, complete sequence
          Length = 180825

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 401    ctactgagctagttagtgca 420
              ||||||||||||||||||||
Sbjct: 122737 ctactgagctagttagtgca 122756



to top

>ref|XM_629042.1| Dictyostelium discoideum hypothetical protein (DDB0192041), partial
           mRNA
          Length = 1107

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 483 aatttgggatgtttctgaag 502
           ||||||||||||||||||||
Sbjct: 909 aatttgggatgtttctgaag 928



to top

>gb|AC110261.25| Mus musculus chromosome 1, clone RP23-289I3, complete sequence
          Length = 213116

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 386   ttcttcgtggttcttctactgagc 409
             |||||| |||||||||||||||||
Sbjct: 55580 ttcttcatggttcttctactgagc 55603



to top

>ref|XM_322748.1| Neurospora crassa OR74A hypothetical protein ( (AF130355) Pad-1
            [Neurospora crassa OR74A] ) (NCU03491.1) partial mRNA
          Length = 1731

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 444  atacttggcctcggcctctt 463
            ||||||||||||||||||||
Sbjct: 1524 atacttggcctcggcctctt 1505



to top

>ref|XM_950785.1| Neurospora crassa OR74A hypothetical protein ( (AF130355) Pad-1
            [Neurospora crassa OR74A] ) (NCU03491.1) partial mRNA
          Length = 1731

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 444  atacttggcctcggcctctt 463
            ||||||||||||||||||||
Sbjct: 1524 atacttggcctcggcctctt 1505



to top

>gb|AC125171.4| Mus musculus BAC clone RP24-475M20 from chromosome 6, complete
           sequence
          Length = 167590

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 387 tcttcgtggttcttctactgagct 410
           ||||||||||||||||| ||||||
Sbjct: 742 tcttcgtggttcttctaatgagct 719



to top

>gb|AC126431.3| Mus musculus BAC clone RP24-407P8 from chromosome 6, complete sequence
          Length = 144924

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 57     agaagaatttgataccaagaaagt 80
              |||||||||||| |||||||||||
Sbjct: 104588 agaagaatttgagaccaagaaagt 104565



to top

>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome
          Length = 4501104

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 220     tggaggccaaacagcgggaa 239
               ||||||||||||||||||||
Sbjct: 1753430 tggaggccaaacagcgggaa 1753449



to top

>emb|AL669988.1|NCB23H20 Neurospora crassa DNA linkage group II BAC contig B23H20
          Length = 122151

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 444   atacttggcctcggcctctt 463
             ||||||||||||||||||||
Sbjct: 53555 atacttggcctcggcctctt 53536



to top

>emb|AL646096.8| Mouse DNA sequence from clone RP23-176J13 on chromosome 11 Contains the
              5' end of the Scpep1 gene for serine carboxypeptidase 1,
              two transcription elongation factor B (SIII) polypeptide 2
              (Tceb2) pseudogenes, four novel genes (incl.
              A930013B10Rik), the Coil gene for coilin, the Trim25 gene
              for tripartite motif protein 25 and the Dgke gene for
              diacylglycerol kinase epsilon, complete sequence
          Length = 171512

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 302    ttgcatccgtgaaatctggt 321
              ||||||||||||||||||||
Sbjct: 146230 ttgcatccgtgaaatctggt 146211



to top

>gb|AC160411.8| Mus musculus  BAC RP23-231J3 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 207444

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 129   ccaggttacggtccatgact 148
             ||||||||||||||||||||
Sbjct: 16610 ccaggttacggtccatgact 16629



to top

>dbj|AK123332.1| Homo sapiens cDNA FLJ41338 fis, clone BRAMY3000307
          Length = 3417

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 593 atggaacttttcacttatgg 612
           ||||||||||||||||||||
Sbjct: 26  atggaacttttcacttatgg 7



to top

>dbj|AB194086.1| Physcomitrella patens subsp. patens pseudogene mRNA for
            penicillin-binding protein, clone:pphn11h02
          Length = 2845

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 190  gaacatcaaaaggaagttaa 209
            ||||||||||||||||||||
Sbjct: 1364 gaacatcaaaaggaagttaa 1383



to top

>dbj|AB194085.1| Physcomitrella patens subsp. patens pseudogene mRNA for
            penicillin-binding protein, clone:pphn18h06
          Length = 2845

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 190  gaacatcaaaaggaagttaa 209
            ||||||||||||||||||||
Sbjct: 1364 gaacatcaaaaggaagttaa 1383



to top

>gb|AC025289.6| Homo sapiens chromosome 16 clone RP11-533D19, complete sequence
          Length = 185047

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 593    atggaacttttcacttatgg 612
              ||||||||||||||||||||
Sbjct: 143740 atggaacttttcacttatgg 143759



to top

>gb|AC025480.7| Homo sapiens chromosome 18, clone RP11-12N19, complete sequence
          Length = 169594

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 64    tttgataccaagaaagtaag 83
             ||||||||||||||||||||
Sbjct: 73194 tttgataccaagaaagtaag 73175



to top

>gb|AC020716.3| Homo sapiens BAC clone RP11-449G13 from 16, complete sequence
          Length = 171805

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 593   atggaacttttcacttatgg 612
             ||||||||||||||||||||
Sbjct: 65091 atggaacttttcacttatgg 65072



to top

>gb|AC160405.7| Mus musculus  BAC RP23-380K24 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 184615

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 129    ccaggttacggtccatgact 148
              ||||||||||||||||||||
Sbjct: 122784 ccaggttacggtccatgact 122803



to top

>gb|AC017047.4|AC017047 Homo sapiens BAC clone RP11-323F10 from X, complete sequence
          Length = 180322

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 316    tctggtgtcacttcttcttc 335
              ||||||||||||||||||||
Sbjct: 161805 tctggtgtcacttcttcttc 161824



to top

>gb|AC026472.8| Homo sapiens chromosome 16 clone RP11-511J24, complete sequence
          Length = 185047

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 593    atggaacttttcacttatgg 612
              ||||||||||||||||||||
Sbjct: 143740 atggaacttttcacttatgg 143759



to top

>gb|AC138811.3| Homo sapiens chromosome 16 clone RP11-1035H13, complete sequence
          Length = 194779

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 593    atggaacttttcacttatgg 612
              ||||||||||||||||||||
Sbjct: 187243 atggaacttttcacttatgg 187262



to top

>gb|AC009295.14|AC009295 Mus musculus chromosome 10, clone RP21-39C4, complete sequence
          Length = 159108

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 129   ccaggttacggtccatgact 148
             ||||||||||||||||||||
Sbjct: 90815 ccaggttacggtccatgact 90796



to top

>gb|AC155726.4| Mus musculus 6 BAC RP24-180C9 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 187560

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 387    tcttcgtggttcttctactgagct 410
              ||||||||||||||||| ||||||
Sbjct: 136731 tcttcgtggttcttctaatgagct 136708



to top

>gb|AF130355.1|AF130355 Neurospora crassa Pad-1 (pad-1) gene, complete cds
          Length = 3921

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 444  atacttggcctcggcctctt 463
            ||||||||||||||||||||
Sbjct: 2494 atacttggcctcggcctctt 2475


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,862,292
Number of Sequences: 3902068
Number of extensions: 5862292
Number of successful extensions: 106477
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 106162
Number of HSP's gapped (non-prelim): 312
length of query: 671
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 648
effective length of database: 17,143,297,704
effective search space: 11108856912192
effective search space used: 11108856912192
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top