ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags39d10 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC150698.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0072P10, complete sequence Length = 147540 Score = 167 bits (84), Expect = 5e-38 Identities = 171/200 (85%) Strand = Plus / Minus Query: 190 gaccacgtgttcaacgaggcggtgaccaacgcgcggatctacgacctgctcgtccgctcc 249 |||||||||||| ||| ||||| || |||| ||||||||||| | |||| || |||||| Sbjct: 102144 gaccacgtgttcgacggggcggccacgaacgagcggatctacggcgtgctggtgcgctcc 102085 Query: 250 ctcatccgtgctgccgtagatggcttcaacggcaccgcctttgcctacggccagaccagc 309 |||||||| || || || || || ||||||||||||||||| |||||||||||||||||| Sbjct: 102084 ctcatccgcgccgcggtcgacgggttcaacggcaccgccttcgcctacggccagaccagc 102025 Query: 310 agtggcaagacgtttaccatgaacggctccgatgccgaccctgggatcatcccgctcgct 369 ||||| |||||||| |||||||||||||||| | | |||| || |||||||||||||| Sbjct: 102024 agtgggaagacgttcaccatgaacggctccgccgaccacccaggcatcatcccgctcgcc 101965 Query: 370 gttcgcgacatctttgacac 389 || |||||| |||| ||||| Sbjct: 101964 gtccgcgacgtcttcgacac 101945 Score = 103 bits (52), Expect = 7e-19 Identities = 85/96 (88%) Strand = Plus / Minus Query: 412 gagttcctgattagggtctcgtacatggagatttataatgaggagatcaatgacctgctg 471 |||||||| || |||||||| |||||||||||||| || ||||| ||||||||||| || Sbjct: 101821 gagttcctcatcagggtctcctacatggagatttacaacgaggaaatcaatgacctcttg 101762 Query: 472 acacttgggagcgagaagctgccaattcatgagagc 507 || || ||||||||||||||||| |||||||||||| Sbjct: 101761 acgctcgggagcgagaagctgccgattcatgagagc 101726 Score = 58.0 bits (29), Expect = 4e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 7 acgagggagaaaatctccgtcgccgtccgcttccgcccgcc 47 |||| |||||| ||||||||||| ||||||||||||||||| Sbjct: 102394 acgatggagaagatctccgtcgcagtccgcttccgcccgcc 102354 Score = 52.0 bits (26), Expect = 0.002 Identities = 70/84 (83%), Gaps = 3/84 (3%) Strand = Plus / Minus Query: 110 accgcgagtggcgcatcgacgact---ctcgaatctccctcctccaccgcgccgtccccg 166 |||||||||||||| |||||||| | || ||| |||||||||||||| || ||||| Sbjct: 102303 accgcgagtggcgcgtcgacgacgacacccgcatcaccctcctccaccgcagcgcccccg 102244 Query: 167 tcaccggcacctccttcgtcttcg 190 || ||||| ||||||||| ||||| Sbjct: 102243 tccccggcgcctccttcgccttcg 102220
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 167 bits (84), Expect = 5e-38 Identities = 171/200 (85%) Strand = Plus / Minus Query: 190 gaccacgtgttcaacgaggcggtgaccaacgcgcggatctacgacctgctcgtccgctcc 249 |||||||||||| ||| ||||| || |||| ||||||||||| | |||| || |||||| Sbjct: 19746571 gaccacgtgttcgacggggcggccacgaacgagcggatctacggcgtgctggtgcgctcc 19746512 Query: 250 ctcatccgtgctgccgtagatggcttcaacggcaccgcctttgcctacggccagaccagc 309 |||||||| || || || || || ||||||||||||||||| |||||||||||||||||| Sbjct: 19746511 ctcatccgcgccgcggtcgacgggttcaacggcaccgccttcgcctacggccagaccagc 19746452 Query: 310 agtggcaagacgtttaccatgaacggctccgatgccgaccctgggatcatcccgctcgct 369 ||||| |||||||| |||||||||||||||| | | |||| || |||||||||||||| Sbjct: 19746451 agtgggaagacgttcaccatgaacggctccgccgaccacccaggcatcatcccgctcgcc 19746392 Query: 370 gttcgcgacatctttgacac 389 || |||||| |||| ||||| Sbjct: 19746391 gtccgcgacgtcttcgacac 19746372 Score = 103 bits (52), Expect = 7e-19 Identities = 85/96 (88%) Strand = Plus / Minus Query: 412 gagttcctgattagggtctcgtacatggagatttataatgaggagatcaatgacctgctg 471 |||||||| || |||||||| |||||||||||||| || ||||| ||||||||||| || Sbjct: 19746248 gagttcctcatcagggtctcctacatggagatttacaacgaggaaatcaatgacctcttg 19746189 Query: 472 acacttgggagcgagaagctgccaattcatgagagc 507 || || ||||||||||||||||| |||||||||||| Sbjct: 19746188 acgctcgggagcgagaagctgccgattcatgagagc 19746153 Score = 58.0 bits (29), Expect = 4e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 7 acgagggagaaaatctccgtcgccgtccgcttccgcccgcc 47 |||| |||||| ||||||||||| ||||||||||||||||| Sbjct: 19746821 acgatggagaagatctccgtcgcagtccgcttccgcccgcc 19746781 Score = 52.0 bits (26), Expect = 0.002 Identities = 70/84 (83%), Gaps = 3/84 (3%) Strand = Plus / Minus Query: 110 accgcgagtggcgcatcgacgact---ctcgaatctccctcctccaccgcgccgtccccg 166 |||||||||||||| |||||||| | || ||| |||||||||||||| || ||||| Sbjct: 19746730 accgcgagtggcgcgtcgacgacgacacccgcatcaccctcctccaccgcagcgcccccg 19746671 Query: 167 tcaccggcacctccttcgtcttcg 190 || ||||| ||||||||| ||||| Sbjct: 19746670 tccccggcgcctccttcgccttcg 19746647
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 167 bits (84), Expect = 5e-38 Identities = 171/200 (85%) Strand = Plus / Minus Query: 190 gaccacgtgttcaacgaggcggtgaccaacgcgcggatctacgacctgctcgtccgctcc 249 |||||||||||| ||| ||||| || |||| ||||||||||| | |||| || |||||| Sbjct: 20032422 gaccacgtgttcgacggggcggccacgaacgagcggatctacggcgtgctggtgcgctcc 20032363 Query: 250 ctcatccgtgctgccgtagatggcttcaacggcaccgcctttgcctacggccagaccagc 309 |||||||| || || || || || ||||||||||||||||| |||||||||||||||||| Sbjct: 20032362 ctcatccgcgccgcggtcgacgggttcaacggcaccgccttcgcctacggccagaccagc 20032303 Query: 310 agtggcaagacgtttaccatgaacggctccgatgccgaccctgggatcatcccgctcgct 369 ||||| |||||||| |||||||||||||||| | | |||| || |||||||||||||| Sbjct: 20032302 agtgggaagacgttcaccatgaacggctccgccgaccacccaggcatcatcccgctcgcc 20032243 Query: 370 gttcgcgacatctttgacac 389 || |||||| |||| ||||| Sbjct: 20032242 gtccgcgacgtcttcgacac 20032223 Score = 103 bits (52), Expect = 7e-19 Identities = 85/96 (88%) Strand = Plus / Minus Query: 412 gagttcctgattagggtctcgtacatggagatttataatgaggagatcaatgacctgctg 471 |||||||| || |||||||| |||||||||||||| || ||||| ||||||||||| || Sbjct: 20032099 gagttcctcatcagggtctcctacatggagatttacaacgaggaaatcaatgacctcttg 20032040 Query: 472 acacttgggagcgagaagctgccaattcatgagagc 507 || || ||||||||||||||||| |||||||||||| Sbjct: 20032039 acgctcgggagcgagaagctgccgattcatgagagc 20032004 Score = 58.0 bits (29), Expect = 4e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 7 acgagggagaaaatctccgtcgccgtccgcttccgcccgcc 47 |||| |||||| ||||||||||| ||||||||||||||||| Sbjct: 20032672 acgatggagaagatctccgtcgcagtccgcttccgcccgcc 20032632 Score = 52.0 bits (26), Expect = 0.002 Identities = 70/84 (83%), Gaps = 3/84 (3%) Strand = Plus / Minus Query: 110 accgcgagtggcgcatcgacgact---ctcgaatctccctcctccaccgcgccgtccccg 166 |||||||||||||| |||||||| | || ||| |||||||||||||| || ||||| Sbjct: 20032581 accgcgagtggcgcgtcgacgacgacacccgcatcaccctcctccaccgcagcgcccccg 20032522 Query: 167 tcaccggcacctccttcgtcttcg 190 || ||||| ||||||||| ||||| Sbjct: 20032521 tccccggcgcctccttcgccttcg 20032498
>gb|AY152827.1| Felis catus clone BAC 186b21 major histocompatiblity complex extended class II region, partial sequence Length = 146453 Score = 50.1 bits (25), Expect = 0.009 Identities = 31/33 (93%) Strand = Plus / Minus Query: 288 ctttgcctacggccagaccagcagtggcaagac 320 |||||||||||||||||| ||||||||||||| Sbjct: 3018 ctttgcctacggccagacaggcagtggcaagac 2986
>emb|X83576.1|CGCHO2A C.griseus mRNA for CHO2 antigen Length = 2311 Score = 50.1 bits (25), Expect = 0.009 Identities = 31/33 (93%) Strand = Plus / Plus Query: 288 ctttgcctacggccagaccagcagtggcaagac 320 |||||||||||| |||||| ||||||||||||| Sbjct: 1338 ctttgcctacggacagaccggcagtggcaagac 1370
>ref|XM_608907.2| PREDICTED: Bos taurus similar to Kinesin-like protein KIF17 (KIF3-related motor protein) (LOC530435), mRNA Length = 3544 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Plus Query: 271 ggcttcaacggcaccgcctttgcctacggccagac 305 |||| |||||||||| |||||||||||||||||| Sbjct: 421 ggctacaacggcaccatctttgcctacggccagac 455
>gb|BC052732.1| Mus musculus kinesin family member 3C, mRNA (cDNA clone IMAGE:6816501), **** WARNING: chimeric clone **** Length = 2729 Score = 46.1 bits (23), Expect = 0.13 Identities = 41/47 (87%) Strand = Plus / Plus Query: 274 ttcaacggcaccgcctttgcctacggccagaccagcagtggcaagac 320 ||||||||||||| |||||||| |||||||| ||| ||||||||| Sbjct: 271 ttcaacggcaccgtatttgcctatggccagactggcactggcaagac 317
>gb|BC053053.1| Mus musculus cDNA clone IMAGE:5709334, **** WARNING: chimeric clone **** Length = 4388 Score = 46.1 bits (23), Expect = 0.13 Identities = 41/47 (87%) Strand = Plus / Plus Query: 274 ttcaacggcaccgcctttgcctacggccagaccagcagtggcaagac 320 ||||||||||||| |||||||| |||||||| ||| ||||||||| Sbjct: 1056 ttcaacggcaccgtatttgcctatggccagactggcactggcaagac 1102
>ref|NM_008445.2| Mus musculus kinesin family member 3C (Kif3c), mRNA Length = 6849 Score = 46.1 bits (23), Expect = 0.13 Identities = 41/47 (87%) Strand = Plus / Plus Query: 274 ttcaacggcaccgcctttgcctacggccagaccagcagtggcaagac 320 ||||||||||||| |||||||| |||||||| ||| ||||||||| Sbjct: 1114 ttcaacggcaccgtatttgcctatggccagactggcactggcaagac 1160
>gb|BC062648.1| Mus musculus cDNA clone IMAGE:6826103, containing frame-shift errors Length = 4119 Score = 46.1 bits (23), Expect = 0.13 Identities = 41/47 (87%) Strand = Plus / Plus Query: 274 ttcaacggcaccgcctttgcctacggccagaccagcagtggcaagac 320 ||||||||||||| |||||||| |||||||| ||| ||||||||| Sbjct: 789 ttcaacggcaccgtatttgcctatggccagactggcactggcaagac 835
>gb|AC160138.2| Mus musculus BAC clone RP23-83G6 from chromosome 12, complete sequence Length = 223906 Score = 46.1 bits (23), Expect = 0.13 Identities = 41/47 (87%) Strand = Plus / Minus Query: 274 ttcaacggcaccgcctttgcctacggccagaccagcagtggcaagac 320 ||||||||||||| |||||||| |||||||| ||| ||||||||| Sbjct: 108695 ttcaacggcaccgtatttgcctatggccagactggcactggcaagac 108649
>dbj|AK220283.1| Mus musculus mRNA for mKIAA4058 protein Length = 4144 Score = 46.1 bits (23), Expect = 0.13 Identities = 41/47 (87%) Strand = Plus / Plus Query: 274 ttcaacggcaccgcctttgcctacggccagaccagcagtggcaagac 320 ||||||||||||| |||||||| |||||||| ||| ||||||||| Sbjct: 839 ttcaacggcaccgtatttgcctatggccagactggcactggcaagac 885
>dbj|AK133649.1| Mus musculus adult male pituitary gland cDNA, RIKEN full-length enriched library, clone:5330428K09 product:kinesin family member 3C, full insert sequence Length = 2306 Score = 46.1 bits (23), Expect = 0.13 Identities = 41/47 (87%) Strand = Plus / Plus Query: 274 ttcaacggcaccgcctttgcctacggccagaccagcagtggcaagac 320 ||||||||||||| |||||||| |||||||| ||| ||||||||| Sbjct: 1096 ttcaacggcaccgtatttgcctatggccagactggcactggcaagac 1142
>dbj|AK147572.1| Mus musculus adult male brain UNDEFINED_CELL_LINE cDNA, RIKEN full-length enriched library, clone:M5C1080M04 product:kinesin family member 3C, full insert sequence Length = 6641 Score = 46.1 bits (23), Expect = 0.13 Identities = 41/47 (87%) Strand = Plus / Plus Query: 274 ttcaacggcaccgcctttgcctacggccagaccagcagtggcaagac 320 ||||||||||||| |||||||| |||||||| ||| ||||||||| Sbjct: 916 ttcaacggcaccgtatttgcctatggccagactggcactggcaagac 962
>ref|XM_307936.2| Anopheles gambiae str. PEST ENSANGP00000006252 (ENSANGG00000004759), partial mRNA Length = 1005 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Plus Query: 288 ctttgcctacggccagaccagcagtggcaagacgt 322 |||||| |||||||| ||| ||||||||||||||| Sbjct: 249 ctttgcgtacggccaaaccggcagtggcaagacgt 283
>gb|AF013116.1|AF013116 Mus musculus kinesin motor protein KIF3C mRNA, complete cds Length = 4017 Score = 46.1 bits (23), Expect = 0.13 Identities = 41/47 (87%) Strand = Plus / Plus Query: 274 ttcaacggcaccgcctttgcctacggccagaccagcagtggcaagac 320 ||||||||||||| |||||||| |||||||| ||| ||||||||| Sbjct: 690 ttcaacggcaccgtatttgcctatggccagactggcactggcaagac 736
>ref|NM_115899.2| Arabidopsis thaliana ubiquitin-protein ligase AT3G60350 mRNA, complete cds Length = 3722 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 559 gctgaacaagtgctacaactcc 580 |||||||||||||||||||||| Sbjct: 2441 gctgaacaagtgctacaactcc 2420
>emb|Z93019.1|HS49C23 Human DNA sequence from clone RP1-49C23 on chromosome Xp11 Contains a malate dehydrogenase 1 NAD (soluble) (MDH1) pseudogene, complete sequence Length = 153078 Score = 44.1 bits (22), Expect = 0.53 Identities = 25/26 (96%) Strand = Plus / Plus Query: 583 gagcttggagaagcaaatagacattt 608 ||||||| |||||||||||||||||| Sbjct: 81962 gagcttgcagaagcaaatagacattt 81987
>emb|AL163852.1|ATF27H5 Arabidopsis thaliana DNA chromosome 3, BAC clone F27H5 Length = 88548 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Plus Query: 559 gctgaacaagtgctacaactcc 580 |||||||||||||||||||||| Sbjct: 82560 gctgaacaagtgctacaactcc 82581
>emb|AL138646.2|ATT8B10 Arabidopsis thaliana DNA chromosome 3, BAC clone T8B10 Length = 103787 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Plus Query: 559 gctgaacaagtgctacaactcc 580 |||||||||||||||||||||| Sbjct: 9107 gctgaacaagtgctacaactcc 9128
>gb|AC144481.6| Medicago truncatula clone mth2-35e10, complete sequence Length = 127189 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 437 tggagatttataatgaggagat 458 |||||||||||||||||||||| Sbjct: 22407 tggagatttataatgaggagat 22386
>gb|AC012173.9| Homo sapiens chromosome 16 clone RP11-152P23, complete sequence Length = 74925 Score = 44.1 bits (22), Expect = 0.53 Identities = 25/26 (96%) Strand = Plus / Plus Query: 139 atctccctcctccaccgcgccgtccc 164 |||||||||||||||||| ||||||| Sbjct: 38848 atctccctcctccaccgccccgtccc 38873
>ref|NM_002263.2| Homo sapiens kinesin family member C1 (KIFC1), mRNA Length = 2391 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 288 ctttgcctacggccagaccagcagtggcaagac 320 ||||||||| |||||||| ||||||||||||| Sbjct: 1376 ctttgcctatggccagacaggcagtggcaagac 1408
>gb|AY729989.1| Drosophila melanogaster kinesin-like motor protein (ncd) gene, ncd-9 allele, partial cds Length = 2439 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 288 ctttgcctacggccagaccagcagtggcaagac 320 |||||||||||| ||||| ||||||||||||| Sbjct: 1522 ctttgcctacggacagacgggcagtggcaagac 1554
>gb|AC113333.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1115_B06, complete sequence Length = 139139 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 139 atctccctcctccaccgcgcc 159 ||||||||||||||||||||| Sbjct: 26323 atctccctcctccaccgcgcc 26343
>gb|AC007893.8| Drosophila melanogaster clone BACR02E15, complete sequence Length = 182430 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Minus Query: 288 ctttgcctacggccagaccagcagtggcaagac 320 |||||||||||| ||||| ||||||||||||| Sbjct: 34351 ctttgcctacggacagacgggcagtggcaagac 34319
>gb|AC144735.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0001A14, complete sequence Length = 129292 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 139 atctccctcctccaccgcgcc 159 ||||||||||||||||||||| Sbjct: 129041 atctccctcctccaccgcgcc 129061
>ref|XM_415645.1| PREDICTED: Gallus gallus similar to Kif2-A-prov protein (LOC417390), mRNA Length = 1969 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 288 ctttgcctacggccagaccagcagtggcaagac 320 ||||||||| |||||||| ||||||||||||| Sbjct: 859 ctttgcctatggccagacaggcagtggcaagac 891
>gb|BC073878.1| Homo sapiens kinesin family member C1, mRNA (cDNA clone IMAGE:3914750), partial cds Length = 2432 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 288 ctttgcctacggccagaccagcagtggcaagac 320 ||||||||| |||||||| ||||||||||||| Sbjct: 1361 ctttgcctatggccagacaggcagtggcaagac 1393
>gb|BC063567.1| Homo sapiens kinesin family member C1, mRNA (cDNA clone IMAGE:4178503), partial cds Length = 2367 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 288 ctttgcctacggccagaccagcagtggcaagac 320 ||||||||| |||||||| ||||||||||||| Sbjct: 1326 ctttgcctatggccagacaggcagtggcaagac 1358
>ref|XM_844776.1| PREDICTED: Canis familiaris similar to Kinesin-like protein KIFC1 (Kinesin-like protein 2) (Kinesin-related protein HSET) (LOC607916), mRNA Length = 2397 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 288 ctttgcctacggccagaccagcagtggcaagac 320 ||||||||| |||||||| ||||||||||||| Sbjct: 1476 ctttgcctatggccagacaggcagtggcaagac 1508
>gb|AY397729.1| Synthetic construct chimeric kinesin-NCD protein mRNA, partial cds Length = 1637 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 288 ctttgcctacggccagaccagcagtggcaagac 320 |||||||||||| ||||| ||||||||||||| Sbjct: 825 ctttgcctacggacagacgggcagtggcaagac 857
>gb|AY397728.1| Synthetic construct chimeric NCD-kinesin protein mRNA, partial cds Length = 1638 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 288 ctttgcctacggccagaccagcagtggcaagac 320 |||||||||||| ||||| ||||||||||||| Sbjct: 666 ctttgcctacggacagacgggcagtggcaagac 698
>gb|BC000712.2| Homo sapiens kinesin family member C1, mRNA (cDNA clone IMAGE:3506669), partial cds Length = 2391 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 288 ctttgcctacggccagaccagcagtggcaagac 320 ||||||||| |||||||| ||||||||||||| Sbjct: 1376 ctttgcctatggccagacaggcagtggcaagac 1408
>gb|AF485901.1| Dendrobium sp. XMW-2002-10 MYB10 (MYB10) mRNA, complete cds Length = 1157 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1 ttcggcacgagggagaaaatc 21 ||||||||||||||||||||| Sbjct: 5 ttcggcacgagggagaaaatc 25
>emb|BX248088.18| Human DNA sequence from clone DAQB-126H3 on chromosome 6 Contains the TAPBP gene for TAP binding protein (tapasin), the ZNF297 gene for zinc finger protein 297, the DAXX gene for death-associated protein 6, the MYL8P pseudogene for myosin, light polypeptide 8, the LYPLA2P1 pseudogene for lysophospholipase II pseudogene 1, the KIFC1 gene for kinesin family member C1, the RPL12P1 pseudogene for ribosomal protein L12 pseudogene 1, the 5'end of the PHF1 gene for PHD finger protein 1, and 6 CpG islands, complete sequence Length = 114575 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 288 ctttgcctacggccagaccagcagtggcaagac 320 ||||||||| |||||||| ||||||||||||| Sbjct: 107898 ctttgcctatggccagacaggcagtggcaagac 107930
>emb|BX088650.9| Human DNA sequence from clone DASS-97D12 on chromosome 6, complete sequence Length = 92518 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 288 ctttgcctacggccagaccagcagtggcaagac 320 ||||||||| |||||||| ||||||||||||| Sbjct: 17260 ctttgcctatggccagacaggcagtggcaagac 17292
>emb|AL662799.16| Human DNA sequence from clone XXbac-294E21 on chromosome 6 contains the gene for a novel protein similar to lysophospholipase II (LYPLA2), the KNSL2 gene for kinesin-like 2, the PHF1 gene for PHD finger protein 1, the gene for divalent cation tolerant protein CUTA, the SYNGAP1 gene for synaptic Ras GTPase activating protein 1 homolog and five CpG islands, complete sequence Length = 136021 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 288 ctttgcctacggccagaccagcagtggcaagac 320 ||||||||| |||||||| ||||||||||||| Sbjct: 57682 ctttgcctatggccagacaggcagtggcaagac 57714
>ref|XM_502544.1| Yarrowia lipolytica CLIB122, YALI0D07722g predicted mRNA Length = 1692 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 289 tttgcctacggccagaccagcagtggcaa 317 ||||||||||||||||| |||||||||| Sbjct: 475 tttgcctacggccagacaggcagtggcaa 503
>emb|AL050332.15|HSDJ570F3 Human DNA sequence from clone RP4-570F3 on chromosome 6 Contains the 5' end of the SYNGAP1 gene for synaptic Ras GTPase activating protein 1 homolog (rat), gene LOC51596 for divalent cation tolerant protein CUTA or brain acetylcholinesterase putative membrane anchor, the PHF1 gene for PHD finger protein 1, the KNSL2 gene for kinesin-like protein 2, a ribosomal protein L12 pseudogene (RPL12P1), a lysophospholipase II (LYPLA2) pseudogene and four CpG islands, complete sequence Length = 94770 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Minus Query: 288 ctttgcctacggccagaccagcagtggcaagac 320 ||||||||| |||||||| ||||||||||||| Sbjct: 40317 ctttgcctatggccagacaggcagtggcaagac 40285
>emb|AL021366.1|HSICK721Q Human DNA sequence from clone ICRF6c-CK0721Q on chromosome 6p21.1-21.32, complete sequence Length = 40775 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 288 ctttgcctacggccagaccagcagtggcaagac 320 ||||||||| |||||||| ||||||||||||| Sbjct: 21250 ctttgcctatggccagacaggcagtggcaagac 21282
>gb|BC098438.1| Homo sapiens cDNA clone IMAGE:3532250, partial cds Length = 2407 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 288 ctttgcctacggccagaccagcagtggcaagac 320 ||||||||| |||||||| ||||||||||||| Sbjct: 1358 ctttgcctatggccagacaggcagtggcaagac 1390
>emb|CR596317.1| full-length cDNA clone CS0DM014YH13 of Fetal liver of Homo sapiens (human) Length = 2340 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 288 ctttgcctacggccagaccagcagtggcaagac 320 ||||||||| |||||||| ||||||||||||| Sbjct: 1345 ctttgcctatggccagacaggcagtggcaagac 1377
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 170 ccggcacctccttcgtcttcg 190 ||||||||||||||||||||| Sbjct: 4499856 ccggcacctccttcgtcttcg 4499876 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 ggcggcggcgctgtcgggaa 110 |||||||||||||||||||| Sbjct: 4632726 ggcggcggcgctgtcgggaa 4632707
>ref|NM_057303.4| Drosophila melanogaster non-claret disjunctional CG7831-RA (ncd), mRNA Length = 2723 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 288 ctttgcctacggccagaccagcagtggcaagac 320 |||||||||||| ||||| ||||||||||||| Sbjct: 1791 ctttgcctacggacagacgggcagtggcaagac 1823
>gb|AY058596.1| Drosophila melanogaster LD29131 full length cDNA Length = 2347 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 288 ctttgcctacggccagaccagcagtggcaagac 320 |||||||||||| ||||| ||||||||||||| Sbjct: 1389 ctttgcctacggacagacgggcagtggcaagac 1421
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 139 atctccctcctccaccgcgcc 159 ||||||||||||||||||||| Sbjct: 27661765 atctccctcctccaccgcgcc 27661785
>gb|AC007892.4|AC007892 Drosophila melanogaster, chromosome 3R, region 99B-99B, BAC clone BACR02O03, complete sequence Length = 202929 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Minus Query: 288 ctttgcctacggccagaccagcagtggcaagac 320 |||||||||||| ||||| ||||||||||||| Sbjct: 160053 ctttgcctacggacagacgggcagtggcaagac 160021
>dbj|AK072239.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023003G05, full insert sequence Length = 1944 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 139 atctccctcctccaccgcgcc 159 ||||||||||||||||||||| Sbjct: 560 atctccctcctccaccgcgcc 540
>gb|AE003771.3| Drosophila melanogaster chromosome 3R, section 109 of 118 of the complete sequence Length = 242528 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Minus Query: 288 ctttgcctacggccagaccagcagtggcaagac 320 |||||||||||| ||||| ||||||||||||| Sbjct: 71283 ctttgcctacggacagacgggcagtggcaagac 71251
>gb|AE015924.1| Porphyromonas gingivalis W83, complete genome Length = 2343476 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 171 cggcacctccttcgtcttcga 191 ||||||||||||||||||||| Sbjct: 1573428 cggcacctccttcgtcttcga 1573448
>dbj|D14678.1|HUMMHCB Homo sapiens HSET mRNA for kinesin-related protein, partial cds Length = 1779 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 288 ctttgcctacggccagaccagcagtggcaagac 320 ||||||||| |||||||| ||||||||||||| Sbjct: 758 ctttgcctatggccagacaggcagtggcaagac 790
>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica Length = 3633272 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 289 tttgcctacggccagaccagcagtggcaa 317 ||||||||||||||||| |||||||||| Sbjct: 998891 tttgcctacggccagacaggcagtggcaa 998863
>emb|X52814.1|DMCLARET D.melanogaster claret nondisjunctional+ gene for claret segregational product, claret disjunctin Length = 2429 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 288 ctttgcctacggccagaccagcagtggcaagac 320 |||||||||||| ||||| ||||||||||||| Sbjct: 1506 ctttgcctacggacagacgggcagtggcaagac 1538
>emb|X57475.1|DMNCDCD D.melanogaster ncdD gene (nonclaret disjunctional dominant) for ncd kinesin-related microtubule motor protein Length = 2221 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 288 ctttgcctacggccagaccagcagtggcaagac 320 |||||||||||| ||||| ||||||||||||| Sbjct: 1408 ctttgcctacggacagacgggcagtggcaagac 1440
>gb|M33932.1|DRONCDA D.melanogaster non-claret disjunctional protein (ncd) mRNA, complete cds Length = 2294 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 288 ctttgcctacggccagaccagcagtggcaagac 320 |||||||||||| ||||| ||||||||||||| Sbjct: 1355 ctttgcctacggacagacgggcagtggcaagac 1387
>ref|XM_956868.1| Neurospora crassa OR74A hypothetical protein (NCU08660.1) partial mRNA Length = 747 Score = 40.1 bits (20), Expect = 8.3 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Minus Query: 142 tccctcctccaccg-cgccgtccccgtc 168 |||||||||||||| ||||||||||||| Sbjct: 600 tccctcctccaccgtcgccgtccccgtc 573
>ref|XM_329783.1| Neurospora crassa OR74A hypothetical protein (NCU08660.1) partial mRNA Length = 747 Score = 40.1 bits (20), Expect = 8.3 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Minus Query: 142 tccctcctccaccg-cgccgtccccgtc 168 |||||||||||||| ||||||||||||| Sbjct: 600 tccctcctccaccgtcgccgtccccgtc 573
>gb|AC147635.4| Mus musculus BAC clone RP23-290C4 from chromosome 3, complete sequence Length = 213637 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 510 tgagcgtggtgtgtatgtgt 529 |||||||||||||||||||| Sbjct: 56094 tgagcgtggtgtgtatgtgt 56113
>emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB Length = 1683333 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 cgtgttcaacgaggcggtga 214 |||||||||||||||||||| Sbjct: 129632 cgtgttcaacgaggcggtga 129613
>emb|AJ225894.1|SRKINESIN Syncephalastrum racemosum mRNA for kinesin Length = 3274 Score = 40.1 bits (20), Expect = 8.3 Identities = 32/36 (88%) Strand = Plus / Plus Query: 270 tggcttcaacggcaccgcctttgcctacggccagac 305 ||||| ||||||||||| ||||||||| || ||||| Sbjct: 350 tggctacaacggcaccgtctttgcctatggtcagac 385
>gb|AE005893.1| Caulobacter crescentus CB15 section 219 of 359 of the complete genome Length = 10274 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 cgggcggcggcgctgtcggg 108 |||||||||||||||||||| Sbjct: 2583 cgggcggcggcgctgtcggg 2564
>dbj|AB226551.1| Aspergillus oryzae cDNA, contig sequence: AoEST3413 Length = 704 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 ttcggcacgagggagaaaat 20 |||||||||||||||||||| Sbjct: 4 ttcggcacgagggagaaaat 23
>gb|AE006470.1| Chlorobium tepidum TLS, complete genome Length = 2154946 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 gcaccgcctttgcctacggc 300 |||||||||||||||||||| Sbjct: 1849535 gcaccgcctttgcctacggc 1849554
>gb|AY005136.1| Chlorobium tepidum FruB (fruB) gene, partial cds; BchH2 (bchH2), BchH1 (bchH1), BchM (bchM), and BchE (bchE) genes, complete cds; Dld1 (dld1) gene, partial cds; and unknown gene Length = 14155 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 gcaccgcctttgcctacggc 300 |||||||||||||||||||| Sbjct: 5172 gcaccgcctttgcctacggc 5191
>ref|XM_393457.2| PREDICTED: Apis mellifera similar to ENSANGP00000004412 (LOC409968), mRNA Length = 4476 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 544 gaaattgttaacaatgctga 563 |||||||||||||||||||| Sbjct: 1940 gaaattgttaacaatgctga 1959
>ref|XM_217893.3| PREDICTED: Rattus norvegicus kinesin family member 13A (predicted) (Kif13a_predicted), mRNA Length = 5319 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 430 tcgtacatggagatttataatgag 453 ||||| |||||||||||||||||| Sbjct: 442 tcgtatatggagatttataatgag 465
>emb|AM055942.1| Toxoplasma gondii, strain RH, genomic DNA chromosome Ia Length = 1923819 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 532 ggtctgcgggaagaaattgt 551 |||||||||||||||||||| Sbjct: 1227429 ggtctgcgggaagaaattgt 1227410
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 8.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 48 caagctttcggtcgacgccaacggcgac 75 |||||||||||||||||| | ||||||| Sbjct: 60910 caagctttcggtcgacgcgaccggcgac 60937
>gb|U94967.1|LBU94967 Leishmania braziliensis M2903 250kb minichromosome GENE53 pseudogene, complete sequence and GTP-binding protein homolog (lgp2) gene, complete cds Length = 7229 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 ccaacggcgactcgtcctcc 84 |||||||||||||||||||| Sbjct: 1239 ccaacggcgactcgtcctcc 1220
>gb|U94966.1|LBU94966 Leishmania braziliensis M2903 GENE53 mRNA, complete cds Length = 2209 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 ccaacggcgactcgtcctcc 84 |||||||||||||||||||| Sbjct: 1126 ccaacggcgactcgtcctcc 1107
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 72 cgactcgtcctccttctcgggcgg 95 ||||||||||||||||||| |||| Sbjct: 3435453 cgactcgtcctccttctcgcgcgg 3435476
>emb|AL772402.5| Mouse DNA sequence from clone RP23-65J9 on chromosome 11, complete sequence Length = 242502 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 510 tgagcgtggtgtgtatgtgt 529 |||||||||||||||||||| Sbjct: 97753 tgagcgtggtgtgtatgtgt 97734 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,384,486 Number of Sequences: 3902068 Number of extensions: 4384486 Number of successful extensions: 84752 Number of sequences better than 10.0: 73 Number of HSP's better than 10.0 without gapping: 71 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 84140 Number of HSP's gapped (non-prelim): 611 length of query: 609 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 586 effective length of database: 17,143,297,704 effective search space: 10045972454544 effective search space used: 10045972454544 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
