No.
Definition
Score (bits)
E Value
1 dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D...
145
2e-31
2 gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome...
145
2e-31
3 emb|AL713901.3|CNS07YQ1 Oryza sativa chromosome 12, . BAC OJ1102...
145
2e-31
4 dbj|AK064995.1| Oryza sativa (japonica cultivar-group) cDNA clon...
143
9e-31
5 emb|AL831811.5|CNS08CAO Oryza sativa chromosome 12, . BAC OJ1561...
143
9e-31
6 dbj|AK064217.1| Oryza sativa (japonica cultivar-group) cDNA clon...
135
2e-28
7 dbj|AK100699.1| Oryza sativa (japonica cultivar-group) cDNA clon...
129
1e-26
8 ref|XM_947213.1| Theileria annulata strain Ankara pre-mRNA splic...
44
0.60
9 emb|CR925781.6| Zebrafish DNA sequence from clone DKEY-3B23 in l...
42
2.4
10 ref|NM_193838.1| Oryza sativa (japonica cultivar-group), predic...
40
9.4
11 gb|AC146423.3| Pan troglodytes BAC clone RP43-25L18 from 7, comp...
40
9.4
12 gb|AC148833.5| Pan troglodytes BAC clone CH251-55M19 from chromo...
40
9.4
13 gb|AC122228.4| Mus musculus BAC clone RP23-131N12 from chromosom...
40
9.4
14 emb|CT010504.7| M.truncatula DNA sequence from clone MTH2-28A3 o...
40
9.4
15 gb|AC005535.2| Homo sapiens PAC clone RP5-1168M19 from 7, comple...
40
9.4
16 emb|AJ250836.1|CAR250836 Cicer arietinum mRNA for phenylalanine ...
40
9.4
17 gb|AC087269.5| Homo sapiens chromosome 8, clone RP11-211C9, comp...
40
9.4
18 gb|AC063962.11| Homo sapiens chromosome 10 clone RP11-222G7, com...
40
9.4
19 gb|AC115540.3| Homo sapiens BAC clone RP11-629I23 from 4, comple...
40
9.4
20 gb|AC007662.3| Arabidopsis thaliana chromosome 2 BAC F9A16 genom...
40
9.4
21 gb|AC006527.5| Arabidopsis thaliana chromosome 2 clone F27C21 ma...
40
9.4
22 gb|AC090567.7| Homo sapiens chromosome 8, clone RP11-18L2, compl...
40
9.4
23 dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D...
40
9.4
24 gb|AC021878.4| Homo sapiens BAC clone RP11-18N21 from 4, complet...
40
9.4
25 ref|XM_218617.3| PREDICTED: Rattus norvegicus myosin, heavy poly...
40
9.4
26 dbj|AP002914.2| Oryza sativa (japonica cultivar-group) genomic D...
40
9.4
27 dbj|BS000015.1| Pan troglodytes chromosome 22 clone:PTB-017F24, ...
40
9.4
28 dbj|AP000929.6| Homo sapiens genomic DNA, chromosome 11 clone:RP...
40
9.4
29 dbj|AP003781.3| Homo sapiens genomic DNA, chromosome 11 clone:RP...
40
9.4
>dbj|AP008218.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
sequence
Length = 27566993
Score = 145 bits (73), Expect = 2e-31
Identities = 151/177 (85%)
Strand = Plus / Minus
Query: 455 ttaagtgttgatcagatacatgagcacactaggcaatggcattgtccggcatgcaaaaat 514
||||||||||| |||||| |||| | |||||||||||||||||||| ||||||||||||
Sbjct: 5047818 ttaagtgttgaacagataaatgaaaagactaggcaatggcattgtccagcatgcaaaaat 5047759
Query: 515 ggaccaggagcaattgactggttcaaagggctgcaatctttggtgacacatgctagaaca 574
| || || | | || ||||| ||||||| | || ||||| ||| ||||||||||||
Sbjct: 5047758 gtacgtggtggagttacctggtacaaagggttacagcctttgatgaatcatgctagaaca 5047699
Query: 575 aagggttctaagagggttaagctccacagggaattggctgcattgctcgaagaggag 631
||||||||||||||||||||||| ||||| |||||||||||||| || |||||||||
Sbjct: 5047698 aagggttctaagagggttaagcttcacagagaattggctgcattactggaagaggag 5047642
Score = 143 bits (72), Expect = 9e-31
Identities = 171/204 (83%)
Strand = Plus / Minus
Query: 482 actaggcaatggcattgtccggcatgcaaaaatggaccaggagcaattgactggttcaaa 541
||||||||||||||||| || ||||||||||||||||| || ||||||||||||| ||||
Sbjct: 5037940 actaggcaatggcattgcccagcatgcaaaaatggacctggtgcaattgactggtacaaa 5037881
Query: 542 gggctgcaatctttggtgacacatgctagaacaaagggttctaagagggttaagctccac 601
||||| ||| ||||| |||| ||||| | |||||||||||||| | ||| |||| |||
Sbjct: 5037880 gggctacaacctttgatgactcatgccaaaacaaagggttctataaaggtcaagcgtcac 5037821
Query: 602 agggaattggctgcattgctcgaagaggagatgtctcgcaggggatcttctgtcgtacca 661
|| ||||||||| || | ||||| ||| | |||||||||||| |||| || ||||||
Sbjct: 5037820 agagaattggctagtttattggaagaagagctatctcgcaggggaacttcagtggtacca 5037761
Query: 662 tctggtgagcaatttgggaaatgg 685
||||| || |||||| ||||||||
Sbjct: 5037760 tctggcgaacaatttaggaaatgg 5037737
Score = 77.8 bits (39), Expect = 4e-11
Identities = 63/71 (88%)
Strand = Plus / Minus
Query: 199 agttgtgactccacccctggcaaatggttggcagtgggcatccaggcctcgcccatctgg 258
|||||||||| |||| |||||||||||||||||||||| | ||||| || ||||| ||||
Sbjct: 5038235 agttgtgactgcacctctggcaaatggttggcagtggggagccaggtcttgcccacctgg 5038176
Query: 259 tcctgaaagca 269
| |||||||||
Sbjct: 5038175 tactgaaagca 5038165
Score = 71.9 bits (36), Expect = 3e-09
Identities = 132/164 (80%)
Strand = Plus / Minus
Query: 106 tcaaccttctgatcgtaggcctgctgctagaggcaatcccagggcatcatcacaaacaaa 165
||||| |||||||| |||||||||||| ||||||| ||| ||| || |||||| ||
Sbjct: 5048401 tcaacattctgatcataggcctgctgccagaggcagtcctaggtcactgccacaaaataa 5048342
Query: 166 gtctacagaaccagacttgcaagcaccaaacccagttgtgactccacccctggcaaatgg 225
| ||||||| || | ||||||||||| |||||||||||| |||| || ||||||||
Sbjct: 5048341 gcatacagaaacaaaattgcaagcaccgtgtccagttgtgactgcacctcttgcaaatgg 5048282
Query: 226 ttggcagtgggcatccaggcctcgcccatctggtcctgaaagca 269
|| |||||||| | ||| | ||||| |||||||| |||| ||||
Sbjct: 5048281 tttgcagtgggtacccaagtctcgctcatctggttctgagagca 5048238
Score = 46.1 bits (23), Expect = 0.15
Identities = 71/87 (81%)
Strand = Plus / Minus
Query: 195 acccagttgtgactccacccctggcaaatggttggcagtgggcatccaggcctcgcccat 254
|||||||||||||| || | || |||||||| | |||||||| ||||| ||||| |||
Sbjct: 5048180 acccagttgtgactgcaactcttgcaaatggcttgcagtgggtgcccaggtctcgctcat 5048121
Query: 255 ctggtcctgaaagcagcaaggatgatg 281
||| || |||||| |||||||||||
Sbjct: 5048120 ctgactctcaaagcaacaaggatgatg 5048094
Score = 44.1 bits (22), Expect = 0.60
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 384 catctgagaaaagttttgagactcgcaaaa 413
|||||||||||| |||||||||||| ||||
Sbjct: 5047889 catctgagaaaaattttgagactcgaaaaa 5047860
>gb|DP000011.1 | Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 145 bits (73), Expect = 2e-31
Identities = 151/177 (85%)
Strand = Plus / Minus
Query: 455 ttaagtgttgatcagatacatgagcacactaggcaatggcattgtccggcatgcaaaaat 514
||||||||||| |||||| |||| | |||||||||||||||||||| ||||||||||||
Sbjct: 5047800 ttaagtgttgaacagataaatgaaaagactaggcaatggcattgtccagcatgcaaaaat 5047741
Query: 515 ggaccaggagcaattgactggttcaaagggctgcaatctttggtgacacatgctagaaca 574
| || || | | || ||||| ||||||| | || ||||| ||| ||||||||||||
Sbjct: 5047740 gtacgtggtggagttacctggtacaaagggttacagcctttgatgaatcatgctagaaca 5047681
Query: 575 aagggttctaagagggttaagctccacagggaattggctgcattgctcgaagaggag 631
||||||||||||||||||||||| ||||| |||||||||||||| || |||||||||
Sbjct: 5047680 aagggttctaagagggttaagcttcacagagaattggctgcattactggaagaggag 5047624
Score = 143 bits (72), Expect = 9e-31
Identities = 171/204 (83%)
Strand = Plus / Minus
Query: 482 actaggcaatggcattgtccggcatgcaaaaatggaccaggagcaattgactggttcaaa 541
||||||||||||||||| || ||||||||||||||||| || ||||||||||||| ||||
Sbjct: 5037922 actaggcaatggcattgcccagcatgcaaaaatggacctggtgcaattgactggtacaaa 5037863
Query: 542 gggctgcaatctttggtgacacatgctagaacaaagggttctaagagggttaagctccac 601
||||| ||| ||||| |||| ||||| | |||||||||||||| | ||| |||| |||
Sbjct: 5037862 gggctacaacctttgatgactcatgccaaaacaaagggttctataaaggtcaagcgtcac 5037803
Query: 602 agggaattggctgcattgctcgaagaggagatgtctcgcaggggatcttctgtcgtacca 661
|| ||||||||| || | ||||| ||| | |||||||||||| |||| || ||||||
Sbjct: 5037802 agagaattggctagtttattggaagaagagctatctcgcaggggaacttcagtggtacca 5037743
Query: 662 tctggtgagcaatttgggaaatgg 685
||||| || |||||| ||||||||
Sbjct: 5037742 tctggcgaacaatttaggaaatgg 5037719
Score = 77.8 bits (39), Expect = 4e-11
Identities = 63/71 (88%)
Strand = Plus / Minus
Query: 199 agttgtgactccacccctggcaaatggttggcagtgggcatccaggcctcgcccatctgg 258
|||||||||| |||| |||||||||||||||||||||| | ||||| || ||||| ||||
Sbjct: 5038217 agttgtgactgcacctctggcaaatggttggcagtggggagccaggtcttgcccacctgg 5038158
Query: 259 tcctgaaagca 269
| |||||||||
Sbjct: 5038157 tactgaaagca 5038147
Score = 71.9 bits (36), Expect = 3e-09
Identities = 132/164 (80%)
Strand = Plus / Minus
Query: 106 tcaaccttctgatcgtaggcctgctgctagaggcaatcccagggcatcatcacaaacaaa 165
||||| |||||||| |||||||||||| ||||||| ||| ||| || |||||| ||
Sbjct: 5048383 tcaacattctgatcataggcctgctgccagaggcagtcctaggtcactgccacaaaataa 5048324
Query: 166 gtctacagaaccagacttgcaagcaccaaacccagttgtgactccacccctggcaaatgg 225
| ||||||| || | ||||||||||| |||||||||||| |||| || ||||||||
Sbjct: 5048323 gcatacagaaacaaaattgcaagcaccgtgtccagttgtgactgcacctcttgcaaatgg 5048264
Query: 226 ttggcagtgggcatccaggcctcgcccatctggtcctgaaagca 269
|| |||||||| | ||| | ||||| |||||||| |||| ||||
Sbjct: 5048263 tttgcagtgggtacccaagtctcgctcatctggttctgagagca 5048220
Score = 46.1 bits (23), Expect = 0.15
Identities = 71/87 (81%)
Strand = Plus / Minus
Query: 195 acccagttgtgactccacccctggcaaatggttggcagtgggcatccaggcctcgcccat 254
|||||||||||||| || | || |||||||| | |||||||| ||||| ||||| |||
Sbjct: 5048162 acccagttgtgactgcaactcttgcaaatggcttgcagtgggtgcccaggtctcgctcat 5048103
Query: 255 ctggtcctgaaagcagcaaggatgatg 281
||| || |||||| |||||||||||
Sbjct: 5048102 ctgactctcaaagcaacaaggatgatg 5048076
Score = 44.1 bits (22), Expect = 0.60
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 384 catctgagaaaagttttgagactcgcaaaa 413
|||||||||||| |||||||||||| ||||
Sbjct: 5047871 catctgagaaaaattttgagactcgaaaaa 5047842
>emb|AL713901.3 |CNS07YQ1 Oryza sativa chromosome 12, . BAC OJ1102_B11 of library Monsanto from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 112231
Score = 145 bits (73), Expect = 2e-31
Identities = 151/177 (85%)
Strand = Plus / Minus
Query: 455 ttaagtgttgatcagatacatgagcacactaggcaatggcattgtccggcatgcaaaaat 514
||||||||||| |||||| |||| | |||||||||||||||||||| ||||||||||||
Sbjct: 18471 ttaagtgttgaacagataaatgaaaagactaggcaatggcattgtccagcatgcaaaaat 18412
Query: 515 ggaccaggagcaattgactggttcaaagggctgcaatctttggtgacacatgctagaaca 574
| || || | | || ||||| ||||||| | || ||||| ||| ||||||||||||
Sbjct: 18411 gtacgtggtggagttacctggtacaaagggttacagcctttgatgaatcatgctagaaca 18352
Query: 575 aagggttctaagagggttaagctccacagggaattggctgcattgctcgaagaggag 631
||||||||||||||||||||||| ||||| |||||||||||||| || |||||||||
Sbjct: 18351 aagggttctaagagggttaagcttcacagagaattggctgcattactggaagaggag 18295
Score = 143 bits (72), Expect = 9e-31
Identities = 171/204 (83%)
Strand = Plus / Minus
Query: 482 actaggcaatggcattgtccggcatgcaaaaatggaccaggagcaattgactggttcaaa 541
||||||||||||||||| || ||||||||||||||||| || ||||||||||||| ||||
Sbjct: 8593 actaggcaatggcattgcccagcatgcaaaaatggacctggtgcaattgactggtacaaa 8534
Query: 542 gggctgcaatctttggtgacacatgctagaacaaagggttctaagagggttaagctccac 601
||||| ||| ||||| |||| ||||| | |||||||||||||| | ||| |||| |||
Sbjct: 8533 gggctacaacctttgatgactcatgccaaaacaaagggttctataaaggtcaagcgtcac 8474
Query: 602 agggaattggctgcattgctcgaagaggagatgtctcgcaggggatcttctgtcgtacca 661
|| ||||||||| || | ||||| ||| | |||||||||||| |||| || ||||||
Sbjct: 8473 agagaattggctagtttattggaagaagagctatctcgcaggggaacttcagtggtacca 8414
Query: 662 tctggtgagcaatttgggaaatgg 685
||||| || |||||| ||||||||
Sbjct: 8413 tctggcgaacaatttaggaaatgg 8390
Score = 77.8 bits (39), Expect = 4e-11
Identities = 63/71 (88%)
Strand = Plus / Minus
Query: 199 agttgtgactccacccctggcaaatggttggcagtgggcatccaggcctcgcccatctgg 258
|||||||||| |||| |||||||||||||||||||||| | ||||| || ||||| ||||
Sbjct: 8888 agttgtgactgcacctctggcaaatggttggcagtggggagccaggtcttgcccacctgg 8829
Query: 259 tcctgaaagca 269
| |||||||||
Sbjct: 8828 tactgaaagca 8818
Score = 71.9 bits (36), Expect = 3e-09
Identities = 132/164 (80%)
Strand = Plus / Minus
Query: 106 tcaaccttctgatcgtaggcctgctgctagaggcaatcccagggcatcatcacaaacaaa 165
||||| |||||||| |||||||||||| ||||||| ||| ||| || |||||| ||
Sbjct: 19054 tcaacattctgatcataggcctgctgccagaggcagtcctaggtcactgccacaaaataa 18995
Query: 166 gtctacagaaccagacttgcaagcaccaaacccagttgtgactccacccctggcaaatgg 225
| ||||||| || | ||||||||||| |||||||||||| |||| || ||||||||
Sbjct: 18994 gcatacagaaacaaaattgcaagcaccgtgtccagttgtgactgcacctcttgcaaatgg 18935
Query: 226 ttggcagtgggcatccaggcctcgcccatctggtcctgaaagca 269
|| |||||||| | ||| | ||||| |||||||| |||| ||||
Sbjct: 18934 tttgcagtgggtacccaagtctcgctcatctggttctgagagca 18891
Score = 46.1 bits (23), Expect = 0.15
Identities = 71/87 (81%)
Strand = Plus / Minus
Query: 195 acccagttgtgactccacccctggcaaatggttggcagtgggcatccaggcctcgcccat 254
|||||||||||||| || | || |||||||| | |||||||| ||||| ||||| |||
Sbjct: 18833 acccagttgtgactgcaactcttgcaaatggcttgcagtgggtgcccaggtctcgctcat 18774
Query: 255 ctggtcctgaaagcagcaaggatgatg 281
||| || |||||| |||||||||||
Sbjct: 18773 ctgactctcaaagcaacaaggatgatg 18747
Score = 44.1 bits (22), Expect = 0.60
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 384 catctgagaaaagttttgagactcgcaaaa 413
|||||||||||| |||||||||||| ||||
Sbjct: 18542 catctgagaaaaattttgagactcgaaaaa 18513
>dbj|AK100699.1 | Oryza sativa (japonica cultivar-group) cDNA clone:J023114M02, full
insert sequence
Length = 2570
Score = 129 bits (65), Expect = 1e-26
Identities = 150/177 (84%), Gaps = 1/177 (0%)
Strand = Plus / Plus
Query: 455 ttaagtgttgatcagatacatgagcacactaggcaatggcattgtccggcatgcaaaaat 514
||||||||||| |||||| |||| | |||||||||||||||||||| |||||||||| |
Sbjct: 876 ttaagtgttgaacagataaatgaaaagactaggcaatggcattgtccagcatgcaaaa-t 934
Query: 515 ggaccaggagcaattgactggttcaaagggctgcaatctttggtgacacatgctagaaca 574
| || || | | || ||||| ||||||| | || ||||| ||| ||||||||||||
Sbjct: 935 gtacgtggtggagttacctggtacaaagggttacagcctttgatgaatcatgctagaaca 994
Query: 575 aagggttctaagagggttaagctccacagggaattggctgcattgctcgaagaggag 631
||||||||||||||||||||||| ||||| |||||||||||||| || |||||||||
Sbjct: 995 aagggttctaagagggttaagcttcacagagaattggctgcattactggaagaggag 1051
Score = 71.9 bits (36), Expect = 3e-09
Identities = 132/164 (80%)
Strand = Plus / Plus
Query: 106 tcaaccttctgatcgtaggcctgctgctagaggcaatcccagggcatcatcacaaacaaa 165
||||| |||||||| |||||||||||| ||||||| ||| ||| || |||||| ||
Sbjct: 293 tcaacattctgatcataggcctgctgccagaggcagtcctaggtcactgccacaaaataa 352
Query: 166 gtctacagaaccagacttgcaagcaccaaacccagttgtgactccacccctggcaaatgg 225
| ||||||| || | ||||||||||| |||||||||||| |||| || ||||||||
Sbjct: 353 gcatacagaaacaaaattgcaagcaccgtgtccagttgtgactgcacctcttgcaaatgg 412
Query: 226 ttggcagtgggcatccaggcctcgcccatctggtcctgaaagca 269
|| |||||||| | ||| | ||||| |||||||| |||| ||||
Sbjct: 413 tttgcagtgggtacccaagtctcgctcatctggttctgagagca 456
Score = 46.1 bits (23), Expect = 0.15
Identities = 71/87 (81%)
Strand = Plus / Plus
Query: 195 acccagttgtgactccacccctggcaaatggttggcagtgggcatccaggcctcgcccat 254
|||||||||||||| || | || |||||||| | |||||||| ||||| ||||| |||
Sbjct: 514 acccagttgtgactgcaactcttgcaaatggcttgcagtgggtgcccaggtctcgctcat 573
Query: 255 ctggtcctgaaagcagcaaggatgatg 281
||| || |||||| |||||||||||
Sbjct: 574 ctgactctcaaagcaacaaggatgatg 600
Score = 44.1 bits (22), Expect = 0.60
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 384 catctgagaaaagttttgagactcgcaaaa 413
|||||||||||| |||||||||||| ||||
Sbjct: 805 catctgagaaaaattttgagactcgaaaaa 834
>dbj|AP003781.3 | Homo sapiens genomic DNA, chromosome 11 clone:RP11-49K4, complete
sequence
Length = 177748
Score = 40.1 bits (20), Expect = 9.4
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 252 catctggtcctgaaagcagc 271
||||||||||||||||||||
Sbjct: 145453 catctggtcctgaaagcagc 145434
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,166,091
Number of Sequences: 3902068
Number of extensions: 5166091
Number of successful extensions: 102699
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 102548
Number of HSP's gapped (non-prelim): 145
length of query: 685
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 662
effective length of database: 17,143,297,704
effective search space: 11348863080048
effective search space used: 11348863080048
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)