ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags39c11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_476192.1| Oryza sativa (japonica cultivar-group), predic... 309 6e-81
2dbj|AK109456.1| Oryza sativa (japonica cultivar-group) cDNA clon... 309 6e-81
3gb|AC135422.2| Oryza sativa (japonica cultivar-group) chromosome... 220 5e-54
4gb|AC146716.1| Oryza sativa (japonica cultivar-group) chromosome... 220 5e-54
5dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 220 5e-54
6ref|NM_114655.3| Arabidopsis thaliana unknown protein AT3G47850 ... 46 0.15
7emb|BX511168.4| Zebrafish DNA sequence from clone DKEY-22F5 in l... 46 0.15
8gb|AY116964.1| Arabidopsis thaliana AT3g47850/T23J7_180 mRNA, co... 46 0.15
9ref|XM_685788.1| PREDICTED: Danio rerio similar to phosphorylase... 46 0.15
10gb|AF428310.1|AF428310 Arabidopsis thaliana AT3g47850/T23J7_180 ... 46 0.15
11emb|BX822580.1|CNS0A765 Arabidopsis thaliana Full-length cDNA Co... 46 0.15
12emb|BX825399.1|CNS0A6EB Arabidopsis thaliana Full-length cDNA Co... 46 0.15
13emb|BX842231.1|CNS09YEF Arabidopsis thaliana Full-length cDNA Co... 46 0.15
14gb|AY086386.1| Arabidopsis thaliana clone 2485 mRNA, complete se... 46 0.15
15emb|AL049552.20|HSJ388E23 Human DNA sequence from clone RP3-388E... 44 0.59
16emb|BX927104.11| Zebrafish DNA sequence from clone CH211-210P22 ... 44 0.59
17emb|BX548041.14| Zebrafish DNA sequence from clone CH211-223G17 ... 44 0.59
18emb|AL627250.8| Human DNA sequence from clone RP13-222H17 on chr... 42 2.3
19gb|AC084377.5| Homo sapiens BAC clone RP11-478L9 from 2, complet... 42 2.3
20gb|AC019060.5|AC019060 Homo sapiens BAC clone RP11-125K5 from Y,... 42 2.3
21gb|AC159273.4| Mus musculus BAC clone RP23-391G8 from chromosome... 40 9.2
22gb|AE017261.1| Picrophilus torridus DSM 9790, complete genome 40 9.2
23gb|AC095021.2| Sus scrofa clone RP44-290D23, complete sequence 40 9.2
24ref|XM_662875.1| Cryptosporidium hominis TU502 hypothetical prot... 40 9.2
25emb|AL732594.5| Mouse DNA sequence from clone RP24-189G18 on chr... 40 9.2
26emb|AL049746.1|ATT23J7 Arabidopsis thaliana DNA chromosome 3, BA... 40 9.2
27emb|BX548248.9| Zebrafish DNA sequence from clone DKEY-245P14 in... 40 9.2
28ref|XM_626205.1| Cryptosporidium parvum Iowa II hypothetical pro... 40 9.2
29gb|AC060788.11| Homo sapiens chromosome 8, clone CTD-2008O4, com... 40 9.2
30dbj|AK077205.1| Mus musculus adult male testis cDNA, RIKEN full-... 40 9.2
31gb|AC093469.11| Mus musculus chromosome 7, clone RP23-21I4, comp... 40 9.2
32gb|AC124730.5| Mus musculus chromosome 5 clone RP23-286M3, compl... 40 9.2
33ref|NM_177607.2| Mus musculus RIKEN cDNA 4933430I17 gene (493343... 40 9.2
34gb|AF051241.1|AF051241 Picea mariana phosphoglycerate kinase (Sb... 40 9.2
35gb|AC125063.4| Mus musculus BAC clone RP23-425N17 from 5, comple... 40 9.2
36gb|AC113434.34| Mus musculus strain C57BL/6J clone rp23-456n12 m... 40 9.2 
>ref|XM_476192.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1056

 Score =  309 bits (156), Expect = 6e-81
 Identities = 346/408 (84%), Gaps = 6/408 (1%)
 Strand = Plus / Plus

                                                                       
Query: 2   gctggataccttgaataagaaaaagcatgatctcgtgcagatgctgaagcagattttaaa 61
           ||||||||| || || ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 528 gctggatactttaaacaagaaaaagcatgatcttgtgcagatgctgaagcagattttaaa 587

                                                                       
Query: 62  tgccgaagaagaaatcagaagacgcagcatgcaggcttcgctgcgtgctgccatgcctca 121
           ||| |||||||||||||| |  |||| ||||||||| ||  ||||  || |  |||||||
Sbjct: 588 tgctgaagaagaaatcaggatgcgcaccatgcaggcctcattgcgcactactgtgcctca 647

                                                                       
Query: 122 gccgccagaaaacacagctgatggaagtg---ttcccagacaggtgcccagaatgaccgt 178
           |||  |||||||| |||| |||||||||    || | || | ||||||||||||||||||
Sbjct: 648 gccatcagaaaacgcagccgatggaagttctatttctaggctggtgcccagaatgaccgt 707

                                                                       
Query: 179 tgatgtcaatttcagcgagtttgctggggagtcagatgctggttccaaccagggcactcc 238
           |||||||||||| || ||  ||||||| ||||| || || ||||||||||||||||||||
Sbjct: 708 tgatgtcaattttagtgatgttgctggcgagtctgaggcgggttccaaccagggcactcc 767

                                                                       
Query: 239 tggacgtcccttgcatcatgtccacagtatttctccttcaacagcctcctttgctaggtc 298
           ||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||
Sbjct: 768 tggacgtcccttgcatcatgttcatagtatttctccttcaacagcctcttttgctaggtc 827

                                                                       
Query: 299 tccatttggttctcgcaaccacaaccctggcaacactccaagaagtccagcagcaccttt 358
           ||| || ||||||| | | |||||  ||||  |||||||||||||||   ||||  ||||
Sbjct: 828 tccgttcggttctctccaacacaattctggtcacactccaagaagtc---cagcgacttt 884

                                                           
Query: 359 ctctacagcaagcccgtctcgcttcgcaggtaccgggcatcaaggaca 406
           ||| |||||||| ||||| ||||| |||| ||| ||  ||||||||||
Sbjct: 885 ctcgacagcaagtccgtcccgctttgcagctactggaaatcaaggaca 932



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 77/87 (88%)
 Strand = Plus / Plus

                                                                        
Query: 435  aactttgtagcatcgtcgccttcccctgctgcatccggtggctcttcctccgtattcagg 494
            ||||||||||| || ||||||||||| ||||| ||||| || ||||||||||| ||||||
Sbjct: 970  aactttgtagcctcttcgccttcccccgctgcctccggcggttcttcctccgtgttcagg 1029

                                       
Query: 495  gactatcgcccgcccagttcaacataa 521
            || |||||||| |||| ||||||||||
Sbjct: 1030 gattatcgcccacccaattcaacataa 1056
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>dbj|AK109456.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-119-D12, full
            insert sequence
          Length = 1535

 Score =  309 bits (156), Expect = 6e-81
 Identities = 346/408 (84%), Gaps = 6/408 (1%)
 Strand = Plus / Plus

                                                                        
Query: 2    gctggataccttgaataagaaaaagcatgatctcgtgcagatgctgaagcagattttaaa 61
            ||||||||| || || ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 794  gctggatactttaaacaagaaaaagcatgatcttgtgcagatgctgaagcagattttaaa 853

                                                                        
Query: 62   tgccgaagaagaaatcagaagacgcagcatgcaggcttcgctgcgtgctgccatgcctca 121
            ||| |||||||||||||| |  |||| ||||||||| ||  ||||  || |  |||||||
Sbjct: 854  tgctgaagaagaaatcaggatgcgcaccatgcaggcctcattgcgcactactgtgcctca 913

                                                                        
Query: 122  gccgccagaaaacacagctgatggaagtg---ttcccagacaggtgcccagaatgaccgt 178
            |||  |||||||| |||| |||||||||    || | || | ||||||||||||||||||
Sbjct: 914  gccatcagaaaacgcagccgatggaagttctatttctaggctggtgcccagaatgaccgt 973

                                                                        
Query: 179  tgatgtcaatttcagcgagtttgctggggagtcagatgctggttccaaccagggcactcc 238
            |||||||||||| || ||  ||||||| ||||| || || ||||||||||||||||||||
Sbjct: 974  tgatgtcaattttagtgatgttgctggcgagtctgaggcgggttccaaccagggcactcc 1033

                                                                        
Query: 239  tggacgtcccttgcatcatgtccacagtatttctccttcaacagcctcctttgctaggtc 298
            ||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||
Sbjct: 1034 tggacgtcccttgcatcatgttcatagtatttctccttcaacagcctcttttgctaggtc 1093

                                                                        
Query: 299  tccatttggttctcgcaaccacaaccctggcaacactccaagaagtccagcagcaccttt 358
            ||| || ||||||| | | |||||  ||||  |||||||||||||||   ||||  ||||
Sbjct: 1094 tccgttcggttctctccaacacaattctggtcacactccaagaagtc---cagcgacttt 1150

                                                            
Query: 359  ctctacagcaagcccgtctcgcttcgcaggtaccgggcatcaaggaca 406
            ||| |||||||| ||||| ||||| |||| ||| ||  ||||||||||
Sbjct: 1151 ctcgacagcaagtccgtcccgctttgcagctactggaaatcaaggaca 1198



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 77/87 (88%)
 Strand = Plus / Plus

                                                                        
Query: 435  aactttgtagcatcgtcgccttcccctgctgcatccggtggctcttcctccgtattcagg 494
            ||||||||||| || ||||||||||| ||||| ||||| || ||||||||||| ||||||
Sbjct: 1236 aactttgtagcctcttcgccttcccccgctgcctccggcggttcttcctccgtgttcagg 1295

                                       
Query: 495  gactatcgcccgcccagttcaacataa 521
            || |||||||| |||| ||||||||||
Sbjct: 1296 gattatcgcccacccaattcaacataa 1322
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>gb|AC135422.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0043H23, complete sequence
          Length = 134097

 Score =  220 bits (111), Expect = 5e-54
 Identities = 227/265 (85%), Gaps = 3/265 (1%)
 Strand = Plus / Plus

                                                                         
Query: 51    cagattttaaatgccgaagaagaaatcagaagacgcagcatgcaggcttcgctgcgtgct 110
             |||||||||||||| |||||||||||||| |  |||| ||||||||| ||  ||||  ||
Sbjct: 39701 cagattttaaatgctgaagaagaaatcaggatgcgcaccatgcaggcctcattgcgcact 39760

                                                                         
Query: 111   gccatgcctcagccgccagaaaacacagctgatggaagtg---ttcccagacaggtgccc 167
              |  ||||||||||  |||||||| |||| |||||||||    || | || | |||||||
Sbjct: 39761 actgtgcctcagccatcagaaaacgcagccgatggaagttctatttctaggctggtgccc 39820

                                                                         
Query: 168   agaatgaccgttgatgtcaatttcagcgagtttgctggggagtcagatgctggttccaac 227
             ||||||||||||||||||||||| || ||  ||||||| ||||| || || |||||||||
Sbjct: 39821 agaatgaccgttgatgtcaattttagtgatgttgctggcgagtctgaggcgggttccaac 39880

                                                                         
Query: 228   cagggcactcctggacgtcccttgcatcatgtccacagtatttctccttcaacagcctcc 287
             |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| 
Sbjct: 39881 cagggcactcctggacgtcccttgcatcatgttcatagtatttctccttcaacagcctct 39940

                                      
Query: 288   tttgctaggtctccatttggttctc 312
             |||||||||||||| || |||||||
Sbjct: 39941 tttgctaggtctccgttcggttctc 39965



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 77/87 (88%)
 Strand = Plus / Plus

                                                                         
Query: 435   aactttgtagcatcgtcgccttcccctgctgcatccggtggctcttcctccgtattcagg 494
             ||||||||||| || ||||||||||| ||||| ||||| || ||||||||||| ||||||
Sbjct: 40365 aactttgtagcctcttcgccttcccccgctgcctccggcggttcttcctccgtgttcagg 40424

                                        
Query: 495   gactatcgcccgcccagttcaacataa 521
             || |||||||| |||| ||||||||||
Sbjct: 40425 gattatcgcccacccaattcaacataa 40451



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 48/52 (92%)
 Strand = Plus / Plus

                                                                 
Query: 2     gctggataccttgaataagaaaaagcatgatctcgtgcagatgctgaagcag 53
             ||||||||| || || ||||||||||||||||| ||||||||||||||||||
Sbjct: 38574 gctggatactttaaacaagaaaaagcatgatcttgtgcagatgctgaagcag 38625
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>gb|AC146716.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1003C08,
             complete sequence
          Length = 152527

 Score =  220 bits (111), Expect = 5e-54
 Identities = 227/265 (85%), Gaps = 3/265 (1%)
 Strand = Plus / Plus

                                                                         
Query: 51    cagattttaaatgccgaagaagaaatcagaagacgcagcatgcaggcttcgctgcgtgct 110
             |||||||||||||| |||||||||||||| |  |||| ||||||||| ||  ||||  ||
Sbjct: 75179 cagattttaaatgctgaagaagaaatcaggatgcgcaccatgcaggcctcattgcgcact 75238

                                                                         
Query: 111   gccatgcctcagccgccagaaaacacagctgatggaagtg---ttcccagacaggtgccc 167
              |  ||||||||||  |||||||| |||| |||||||||    || | || | |||||||
Sbjct: 75239 actgtgcctcagccatcagaaaacgcagccgatggaagttctatttctaggctggtgccc 75298

                                                                         
Query: 168   agaatgaccgttgatgtcaatttcagcgagtttgctggggagtcagatgctggttccaac 227
             ||||||||||||||||||||||| || ||  ||||||| ||||| || || |||||||||
Sbjct: 75299 agaatgaccgttgatgtcaattttagtgatgttgctggcgagtctgaggcgggttccaac 75358

                                                                         
Query: 228   cagggcactcctggacgtcccttgcatcatgtccacagtatttctccttcaacagcctcc 287
             |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| 
Sbjct: 75359 cagggcactcctggacgtcccttgcatcatgttcatagtatttctccttcaacagcctct 75418

                                      
Query: 288   tttgctaggtctccatttggttctc 312
             |||||||||||||| || |||||||
Sbjct: 75419 tttgctaggtctccgttcggttctc 75443



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 77/87 (88%)
 Strand = Plus / Plus

                                                                         
Query: 435   aactttgtagcatcgtcgccttcccctgctgcatccggtggctcttcctccgtattcagg 494
             ||||||||||| || ||||||||||| ||||| ||||| || ||||||||||| ||||||
Sbjct: 75843 aactttgtagcctcttcgccttcccccgctgcctccggcggttcttcctccgtgttcagg 75902

                                        
Query: 495   gactatcgcccgcccagttcaacataa 521
             || |||||||| |||| ||||||||||
Sbjct: 75903 gattatcgcccacccaattcaacataa 75929



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 48/52 (92%)
 Strand = Plus / Plus

                                                                 
Query: 2     gctggataccttgaataagaaaaagcatgatctcgtgcagatgctgaagcag 53
             ||||||||| || || ||||||||||||||||| ||||||||||||||||||
Sbjct: 74052 gctggatactttaaacaagaaaaagcatgatcttgtgcagatgctgaagcag 74103
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score =  220 bits (111), Expect = 5e-54
 Identities = 227/265 (85%), Gaps = 3/265 (1%)
 Strand = Plus / Plus

                                                                           
Query: 51      cagattttaaatgccgaagaagaaatcagaagacgcagcatgcaggcttcgctgcgtgct 110
               |||||||||||||| |||||||||||||| |  |||| ||||||||| ||  ||||  ||
Sbjct: 7336924 cagattttaaatgctgaagaagaaatcaggatgcgcaccatgcaggcctcattgcgcact 7336983

                                                                           
Query: 111     gccatgcctcagccgccagaaaacacagctgatggaagtg---ttcccagacaggtgccc 167
                |  ||||||||||  |||||||| |||| |||||||||    || | || | |||||||
Sbjct: 7336984 actgtgcctcagccatcagaaaacgcagccgatggaagttctatttctaggctggtgccc 7337043

                                                                           
Query: 168     agaatgaccgttgatgtcaatttcagcgagtttgctggggagtcagatgctggttccaac 227
               ||||||||||||||||||||||| || ||  ||||||| ||||| || || |||||||||
Sbjct: 7337044 agaatgaccgttgatgtcaattttagtgatgttgctggcgagtctgaggcgggttccaac 7337103

                                                                           
Query: 228     cagggcactcctggacgtcccttgcatcatgtccacagtatttctccttcaacagcctcc 287
               |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| 
Sbjct: 7337104 cagggcactcctggacgtcccttgcatcatgttcatagtatttctccttcaacagcctct 7337163

                                        
Query: 288     tttgctaggtctccatttggttctc 312
               |||||||||||||| || |||||||
Sbjct: 7337164 tttgctaggtctccgttcggttctc 7337188



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 77/87 (88%)
 Strand = Plus / Plus

                                                                           
Query: 435     aactttgtagcatcgtcgccttcccctgctgcatccggtggctcttcctccgtattcagg 494
               ||||||||||| || ||||||||||| ||||| ||||| || ||||||||||| ||||||
Sbjct: 7337588 aactttgtagcctcttcgccttcccccgctgcctccggcggttcttcctccgtgttcagg 7337647

                                          
Query: 495     gactatcgcccgcccagttcaacataa 521
               || |||||||| |||| ||||||||||
Sbjct: 7337648 gattatcgcccacccaattcaacataa 7337674



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 48/52 (92%)
 Strand = Plus / Plus

                                                                   
Query: 2       gctggataccttgaataagaaaaagcatgatctcgtgcagatgctgaagcag 53
               ||||||||| || || ||||||||||||||||| ||||||||||||||||||
Sbjct: 7335797 gctggatactttaaacaagaaaaagcatgatcttgtgcagatgctgaagcag 7335848
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>ref|NM_114655.3| Arabidopsis thaliana unknown protein AT3G47850 mRNA, complete cds
          Length = 1235

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                          
Query: 43  tgctgaagcagattttaaatgccgaagaagaaatcagaagacgcagc 89
           |||| ||||||||||||||||| || |||||| | | ||||||||||
Sbjct: 613 tgcttaagcagattttaaatgctgaggaagaattgaaaagacgcagc 659
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>emb|BX511168.4| Zebrafish DNA sequence from clone DKEY-22F5 in linkage group 21, complete
              sequence
          Length = 263757

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 32     tctcgtgcagatgctgaagcaga 54
              |||||||||||||||||||||||
Sbjct: 234705 tctcgtgcagatgctgaagcaga 234727
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>gb|AY116964.1| Arabidopsis thaliana AT3g47850/T23J7_180 mRNA, complete cds
          Length = 969

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                          
Query: 43  tgctgaagcagattttaaatgccgaagaagaaatcagaagacgcagc 89
           |||| ||||||||||||||||| || |||||| | | ||||||||||
Sbjct: 524 tgcttaagcagattttaaatgctgaggaagaattgaaaagacgcagc 570
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>ref|XM_685788.1| PREDICTED: Danio rerio similar to phosphorylase kinase alpha 1
            (LOC562402), mRNA
          Length = 3228

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 32   tctcgtgcagatgctgaagcaga 54
            |||||||||||||||||||||||
Sbjct: 2148 tctcgtgcagatgctgaagcaga 2170
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>gb|AF428310.1|AF428310 Arabidopsis thaliana AT3g47850/T23J7_180 mRNA, complete cds
          Length = 1160

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                          
Query: 43  tgctgaagcagattttaaatgccgaagaagaaatcagaagacgcagc 89
           |||| ||||||||||||||||| || |||||| | | ||||||||||
Sbjct: 575 tgcttaagcagattttaaatgctgaggaagaattgaaaagacgcagc 621
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>emb|BX822580.1|CNS0A765 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB4ZG08 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1247

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                          
Query: 43  tgctgaagcagattttaaatgccgaagaagaaatcagaagacgcagc 89
           |||| ||||||||||||||||| || |||||| | | ||||||||||
Sbjct: 616 tgcttaagcagattttaaatgctgaggaagaattgaaaagacgcagc 662
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>emb|BX825399.1|CNS0A6EB Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL34ZF10 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 1157

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                          
Query: 43  tgctgaagcagattttaaatgccgaagaagaaatcagaagacgcagc 89
           |||| ||||||||||||||||| || |||||| | | ||||||||||
Sbjct: 613 tgcttaagcagattttaaatgctgaggaagaattgaaaagacgcagc 659
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>emb|BX842231.1|CNS09YEF Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL88ZH01 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 1127

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                          
Query: 43  tgctgaagcagattttaaatgccgaagaagaaatcagaagacgcagc 89
           |||| ||||||||||||||||| || |||||| | | ||||||||||
Sbjct: 529 tgcttaagcagattttaaatgctgaggaagaattgaaaagacgcagc 575
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>gb|AY086386.1| Arabidopsis thaliana clone 2485 mRNA, complete sequence
          Length = 1168

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                          
Query: 43  tgctgaagcagattttaaatgccgaagaagaaatcagaagacgcagc 89
           |||| ||||||||||||||||| || |||||| | | ||||||||||
Sbjct: 556 tgcttaagcagattttaaatgctgaggaagaattgaaaagacgcagc 602
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>emb|AL049552.20|HSJ388E23 Human DNA sequence from clone RP3-388E23 on chromosome 6q22.33-24.1
             Contains part of the gene for a novel protein, a novel
             gene and a CpG Island, complete sequence
          Length = 98828

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 594   ctttgaattgctactttattga 615
             ||||||||||||||||||||||
Sbjct: 52354 ctttgaattgctactttattga 52375
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>emb|BX927104.11| Zebrafish DNA sequence from clone CH211-210P22 in linkage group 17,
              complete sequence
          Length = 146265

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 608    tttattgacaatattatgtgaa 629
              ||||||||||||||||||||||
Sbjct: 105306 tttattgacaatattatgtgaa 105285
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>emb|BX548041.14| Zebrafish DNA sequence from clone CH211-223G17 in linkage group 12,
             complete sequence
          Length = 123626

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 608   tttattgacaatattatgtgaa 629
             ||||||||||||||||||||||
Sbjct: 87882 tttattgacaatattatgtgaa 87861
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>emb|AL627250.8| Human DNA sequence from clone RP13-222H17 on chromosome X Contains a
             novel pseudogene, complete sequence
          Length = 177796

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 262   acagtatttctccttcaacag 282
             |||||||||||||||||||||
Sbjct: 10504 acagtatttctccttcaacag 10524
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>gb|AC084377.5| Homo sapiens BAC clone RP11-478L9 from 2, complete sequence
          Length = 152320

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 258   gtccacagtatttctccttca 278
             |||||||||||||||||||||
Sbjct: 95067 gtccacagtatttctccttca 95047
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>gb|AC019060.5|AC019060 Homo sapiens BAC clone RP11-125K5 from Y, complete sequence
          Length = 116795

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 262  acagtatttctccttcaacag 282
            |||||||||||||||||||||
Sbjct: 9292 acagtatttctccttcaacag 9312
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>gb|AC159273.4| Mus musculus BAC clone RP23-391G8 from chromosome 7, complete sequence
          Length = 227709

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 271   ctccttcaacagcctccttt 290
             ||||||||||||||||||||
Sbjct: 22812 ctccttcaacagcctccttt 22831
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>gb|AE017261.1| Picrophilus torridus DSM 9790, complete genome
          Length = 1545895

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 275     ttcaacagcctcctttgcta 294
               ||||||||||||||||||||
Sbjct: 1236745 ttcaacagcctcctttgcta 1236726
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>gb|AC095021.2| Sus scrofa clone RP44-290D23, complete sequence
          Length = 165901

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 146   aagtgttcccagacaggtgcccag 169
             |||||||||||| |||||||||||
Sbjct: 15426 aagtgttcccaggcaggtgcccag 15403
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>ref|XM_662875.1| Cryptosporidium hominis TU502 hypothetical protein (Chro.50109)
           partial mRNA
          Length = 1800

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 608 tttattgacaatattatgtg 627
           ||||||||||||||||||||
Sbjct: 621 tttattgacaatattatgtg 602
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>emb|AL732594.5| Mouse DNA sequence from clone RP24-189G18 on chromosome 4 Contains the
              Prpf4 gene for PRP4 pre-mRNA processing factor 4 homolog
              (yeast), three novel genes, the Bspry gene for B-box and
              SPRY domain containing protein, the Alad gene for delta
              aminolevulinate dehydratase, the Pole3 gene for polymerase
              (DNA directed) epsilon 3 (p17 subunit) and three CpG
              islands, complete sequence
          Length = 145776

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 450    tcgccttcccctgctgcatc 469
              ||||||||||||||||||||
Sbjct: 136136 tcgccttcccctgctgcatc 136117
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>emb|AL049746.1|ATT23J7 Arabidopsis thaliana DNA chromosome 3, BAC clone T23J7
          Length = 92493

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                     
Query: 50    gcagattttaaatgccgaagaagaaatcagaagacgcagc 89
             ||||||||||||||| || |||||| | | ||||||||||
Sbjct: 78985 gcagattttaaatgctgaggaagaattgaaaagacgcagc 78946
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>emb|BX548248.9| Zebrafish DNA sequence from clone DKEY-245P14 in linkage group 1,
             complete sequence
          Length = 173643

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 605   tactttattgacaatattat 624
             ||||||||||||||||||||
Sbjct: 90537 tactttattgacaatattat 90556
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>ref|XM_626205.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd5_2680),
            partial mRNA
          Length = 3780

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 608  tttattgacaatattatgtg 627
            ||||||||||||||||||||
Sbjct: 2601 tttattgacaatattatgtg 2582
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>gb|AC060788.11| Homo sapiens chromosome 8, clone CTD-2008O4, complete sequence
          Length = 177717

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 591    cctctttgaattgctacttt 610
              ||||||||||||||||||||
Sbjct: 154405 cctctttgaattgctacttt 154386
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>dbj|AK077205.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
            library, clone:4933430I17 product:weakly similar to
            HYPOTHETICAL 53.2 KDA PROTEIN [Macaca fascicularis], full
            insert sequence
          Length = 1785

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 450  tcgccttcccctgctgcatc 469
            ||||||||||||||||||||
Sbjct: 1074 tcgccttcccctgctgcatc 1055
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>gb|AC093469.11| Mus musculus chromosome 7, clone RP23-21I4, complete sequence
          Length = 215022

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 271    ctccttcaacagcctccttt 290
              ||||||||||||||||||||
Sbjct: 179714 ctccttcaacagcctccttt 179733
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>gb|AC124730.5| Mus musculus chromosome 5 clone RP23-286M3, complete sequence
          Length = 194040

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 123    ccgccagaaaacacagctga 142
              ||||||||||||||||||||
Sbjct: 174532 ccgccagaaaacacagctga 174551
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>ref|NM_177607.2| Mus musculus RIKEN cDNA 4933430I17 gene (4933430I17Rik), mRNA
          Length = 1785

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 450  tcgccttcccctgctgcatc 469
            ||||||||||||||||||||
Sbjct: 1074 tcgccttcccctgctgcatc 1055
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>gb|AF051241.1|AF051241 Picea mariana phosphoglycerate kinase (Sb56) mRNA, partial cds
          Length = 663

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 599 aattgctactttattgacaa 618
           ||||||||||||||||||||
Sbjct: 653 aattgctactttattgacaa 634
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>gb|AC125063.4| Mus musculus BAC clone RP23-425N17 from 5, complete sequence
          Length = 194931

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 123    ccgccagaaaacacagctga 142
              ||||||||||||||||||||
Sbjct: 172588 ccgccagaaaacacagctga 172569
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>gb|AC113434.34| Mus musculus strain C57BL/6J clone rp23-456n12 map 5, complete sequence
          Length = 203821

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 123    ccgccagaaaacacagctga 142
              ||||||||||||||||||||
Sbjct: 199898 ccgccagaaaacacagctga 199879


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,908,844
Number of Sequences: 3902068
Number of extensions: 5908844
Number of successful extensions: 107635
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 107525
Number of HSP's gapped (non-prelim): 110
length of query: 671
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 648
effective length of database: 17,143,297,704
effective search space: 11108856912192
effective search space used: 11108856912192
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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