ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags38n08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1STIP_SOYBN (Q43468) Heat shock protein STI (Stress-inducible pro... 29 3.0
2CP4C1_BLADI (P29981) Cytochrome P450 4C1 (EC 1.14.14.1) (CYPIVC1) 28 6.6
3IBMP_CAMVB (P16666) Inclusion body matrix protein (Viroplasmin) 28 6.6
4CYAA_PODAN (Q01513) Adenylate cyclase (EC 4.6.1.1) (ATP pyrophos... 28 8.6

>STIP_SOYBN (Q43468) Heat shock protein STI (Stress-inducible protein) (GmSTI)|
          Length = 569

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 87  NEQPDILRPLYSALQPSSSLEEIRYYDSRLSDQ 185
           N  PD L+ L  A +    LE+  Y+D +L+D+
Sbjct: 351 NRNPDTLKKLNEAEKAKKELEQQEYFDPKLADE 383



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>CP4C1_BLADI (P29981) Cytochrome P450 4C1 (EC 1.14.14.1) (CYPIVC1)|
          Length = 511

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 24  VISAGCFMSLYIGHIHKYNSLNEQPDILRP 113
           ++ AGC M+L I H+H+       P+   P
Sbjct: 397 LVPAGCMMNLQIYHVHRNQDQYPNPEAFNP 426



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>IBMP_CAMVB (P16666) Inclusion body matrix protein (Viroplasmin)|
          Length = 522

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 5/37 (13%)
 Frame = +3

Query: 87  NEQPDILRPLYSA-----LQPSSSLEEIRYYDSRLSD 182
           N  P+++R  Y+A     + PS++L+EI+Y   ++ D
Sbjct: 287 NANPEMIREAYNAGLIRTIYPSNNLQEIKYLPKKVKD 323



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>CYAA_PODAN (Q01513) Adenylate cyclase (EC 4.6.1.1) (ATP pyrophosphate-lyase)|
           (Adenylyl cyclase)
          Length = 2145

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 60  GHIHKYNSLNEQPDILRPLYSALQPSSSLEEIR 158
           GH H++N  NE P  LRP  S    + S+ + R
Sbjct: 370 GHHHRHNKSNEDPRSLRPTVSREDSTISVPKDR 402


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,568,384
Number of Sequences: 219361
Number of extensions: 393365
Number of successful extensions: 903
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 80,573,946
effective HSP length: 41
effective length of database: 71,580,145
effective search space used: 1717923480
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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