ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags38n08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_468083.1| Oryza sativa (japonica cultivar-group), mRNA 76 5e-11
2ref|XM_468082.1| Oryza sativa (japonica cultivar-group), mRNA 76 5e-11
3dbj|AK100242.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 5e-11
4dbj|AK058466.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 5e-11
5dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.010
6dbj|AP004846.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.010
7dbj|AP004140.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.010
8gb|AC136521.2| Oryza sativa (japonica cultivar-group) chromosome... 40 2.5
9gb|AC134345.2| Oryza sativa (jpaonica cultivar-group) chromosome... 40 2.5
10emb|Z97343.1|ATFCA8 Arabidopsis thaliana DNA chromosome 4, ESSA ... 40 2.5
11emb|AL161546.2|ATCHRIV46 Arabidopsis thaliana DNA chromosome 4, ... 40 2.5
12gb|AC087710.8| Homo sapiens chromosome 8, clone RP11-11A18, comp... 40 2.5
13dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.5
14dbj|AP002979.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 40 2.5
15gb|AC152821.5| Mus musculus BAC clone RP24-366H21 from chromosom... 38 9.9
16gb|AC135808.4| Mus musculus BAC clone RP24-316N5 from chromosome... 38 9.9
17gb|AC123565.6| Homo sapiens 3 BAC RP11-539J20 (Roswell Park Canc... 38 9.9
18gb|AC146141.2| Pan troglodytes BAC clone RP43-3A23 from 7, compl... 38 9.9
19emb|AL096776.12|HSJ646B12 Human DNA sequence from clone RP4-646B... 38 9.9
20gb|AC124907.3| Equus caballus clone CH241-409I22, complete sequence 38 9.9
21gb|DP000004.1| Lemur catta target 1 genomic scaffold 38 9.9
22gb|AC159235.2| Mus musculus BAC clone RP24-432L4 from chromosome... 38 9.9
23gb|AC068888.35| Homo sapiens 12 BAC RP11-983P16 (Roswell Park Ca... 38 9.9
24gb|AC023108.4| Homo sapiens BAC clone RP11-121I13 from 2, comple... 38 9.9
25gb|AC123970.3| Lemur catta clone LB2-159J16, complete sequence 38 9.9
26emb|BX890639.3| Mouse DNA sequence from clone RP23-290E8 on chro... 38 9.9
27dbj|BA000016.3| Clostridium perfringens str. 13 DNA, complete ge... 38 9.9
28emb|AL929534.12| Mouse DNA sequence from clone RP23-275L13 on ch... 38 9.9
29dbj|AP005059.2| Homo sapiens genomic DNA, chromosome 18 clone:RP... 38 9.9
30gb|DP000020.1| Equus caballus target 1 genomic scaffold 38 9.9 
>ref|XM_468083.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2350

 Score = 75.8 bits (38), Expect = 5e-11
 Identities = 139/173 (80%), Gaps = 6/173 (3%)
 Strand = Plus / Plus

                                                                        
Query: 33   gctggatgtttcatgagcttatacatagggcacatccataaatacaactctttgaatgag 92
            |||||||||||||||||||||||| || |||| ||||| || ||||||||| |||||| |
Sbjct: 1333 gctggatgtttcatgagcttatacttatggcatatccacaagtacaactctctgaatggg 1392

                                                                        
Query: 93   cagcctgacattctacggccactttattctgc------actgcaaccatctagttcgttg 146
            || ||||| ||| | ||| |  | ||||||||      ||| |||||||||||||| |||
Sbjct: 1393 caccctgatattttgcggtccttatattctgcactccaactccaaccatctagttctttg 1452

                                                                 
Query: 147  gaagagataaggtactatgattctcgtctgtctgatcaacaaatggcactgct 199
            |||||   |||||| ||||||  |||| | ||||| || |||||||| |||||
Sbjct: 1453 gaagaacgaaggtattatgatggtcgtttttctgaccagcaaatggctctgct 1505
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>ref|XM_468082.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1777

 Score = 75.8 bits (38), Expect = 5e-11
 Identities = 139/173 (80%), Gaps = 6/173 (3%)
 Strand = Plus / Plus

                                                                       
Query: 33  gctggatgtttcatgagcttatacatagggcacatccataaatacaactctttgaatgag 92
           |||||||||||||||||||||||| || |||| ||||| || ||||||||| |||||| |
Sbjct: 800 gctggatgtttcatgagcttatacttatggcatatccacaagtacaactctctgaatggg 859

                                                                       
Query: 93  cagcctgacattctacggccactttattctgc------actgcaaccatctagttcgttg 146
           || ||||| ||| | ||| |  | ||||||||      ||| |||||||||||||| |||
Sbjct: 860 caccctgatattttgcggtccttatattctgcactccaactccaaccatctagttctttg 919

                                                                
Query: 147 gaagagataaggtactatgattctcgtctgtctgatcaacaaatggcactgct 199
           |||||   |||||| ||||||  |||| | ||||| || |||||||| |||||
Sbjct: 920 gaagaacgaaggtattatgatggtcgtttttctgaccagcaaatggctctgct 972
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>dbj|AK100242.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023055F23, full
            insert sequence
          Length = 2349

 Score = 75.8 bits (38), Expect = 5e-11
 Identities = 139/173 (80%), Gaps = 6/173 (3%)
 Strand = Plus / Plus

                                                                        
Query: 33   gctggatgtttcatgagcttatacatagggcacatccataaatacaactctttgaatgag 92
            |||||||||||||||||||||||| || |||| ||||| || ||||||||| |||||| |
Sbjct: 1332 gctggatgtttcatgagcttatacttatggcatatccacaagtacaactctctgaatggg 1391

                                                                        
Query: 93   cagcctgacattctacggccactttattctgc------actgcaaccatctagttcgttg 146
            || ||||| ||| | ||| |  | ||||||||      ||| |||||||||||||| |||
Sbjct: 1392 caccctgatattttgcggtccttatattctgcactccaactccaaccatctagttctttg 1451

                                                                 
Query: 147  gaagagataaggtactatgattctcgtctgtctgatcaacaaatggcactgct 199
            |||||   |||||| ||||||  |||| | ||||| || |||||||| |||||
Sbjct: 1452 gaagaacgaaggtattatgatggtcgtttttctgaccagcaaatggctctgct 1504
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>dbj|AK058466.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-A12, full
           insert sequence
          Length = 1777

 Score = 75.8 bits (38), Expect = 5e-11
 Identities = 139/173 (80%), Gaps = 6/173 (3%)
 Strand = Plus / Plus

                                                                       
Query: 33  gctggatgtttcatgagcttatacatagggcacatccataaatacaactctttgaatgag 92
           |||||||||||||||||||||||| || |||| ||||| || ||||||||| |||||| |
Sbjct: 800 gctggatgtttcatgagcttatacttatggcatatccacaagtacaactctctgaatggg 859

                                                                       
Query: 93  cagcctgacattctacggccactttattctgc------actgcaaccatctagttcgttg 146
           || ||||| ||| | ||| |  | ||||||||      ||| |||||||||||||| |||
Sbjct: 860 caccctgatattttgcggtccttatattctgcactccaactccaaccatctagttctttg 919

                                                                
Query: 147 gaagagataaggtactatgattctcgtctgtctgatcaacaaatggcactgct 199
           |||||   |||||| ||||||  |||| | ||||| || |||||||| |||||
Sbjct: 920 gaagaacgaaggtattatgatggtcgtttttctgaccagcaaatggctctgct 972
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 48.1 bits (24), Expect = 0.010
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                        
Query: 33       gctggatgtttcatgagcttatac 56
                ||||||||||||||||||||||||
Sbjct: 32966421 gctggatgtttcatgagcttatac 32966444



 Score = 38.2 bits (19), Expect = 9.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                       
Query: 129      caaccatctagttcgttggaaga 151
                |||||||||||||| ||||||||
Sbjct: 32966803 caaccatctagttctttggaaga 32966825
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>dbj|AP004846.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1293_A01
          Length = 139121

 Score = 48.1 bits (24), Expect = 0.010
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 33    gctggatgtttcatgagcttatac 56
             ||||||||||||||||||||||||
Sbjct: 12361 gctggatgtttcatgagcttatac 12384



 Score = 38.2 bits (19), Expect = 9.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 129   caaccatctagttcgttggaaga 151
             |||||||||||||| ||||||||
Sbjct: 12743 caaccatctagttctttggaaga 12765
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>dbj|AP004140.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1534_E09
          Length = 126209

 Score = 48.1 bits (24), Expect = 0.010
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                      
Query: 33     gctggatgtttcatgagcttatac 56
              ||||||||||||||||||||||||
Sbjct: 121162 gctggatgtttcatgagcttatac 121185



 Score = 38.2 bits (19), Expect = 9.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 129    caaccatctagttcgttggaaga 151
              |||||||||||||| ||||||||
Sbjct: 121544 caaccatctagttctttggaaga 121566
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>gb|AC136521.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone
             OSJNBa0034M22, complete sequence
          Length = 149435

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 31    ccgctggatgtttcatgagcttat 54
             ||||||||||||||||||| ||||
Sbjct: 43246 ccgctggatgtttcatgagattat 43223
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>gb|AC134345.2| Oryza sativa (jpaonica cultivar-group) chromosome 5 PAC clone P0012A07,
              complete sequence
          Length = 136858

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 31     ccgctggatgtttcatgagcttat 54
              ||||||||||||||||||| ||||
Sbjct: 116074 ccgctggatgtttcatgagattat 116051
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>emb|Z97343.1|ATFCA8 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 8
          Length = 207674

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 132   ccatctagttcgttggaagagata 155
             |||| |||||||||||||||||||
Sbjct: 69378 ccatttagttcgttggaagagata 69401
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>emb|AL161546.2|ATCHRIV46 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 46
          Length = 198788

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 132   ccatctagttcgttggaagagata 155
             |||| |||||||||||||||||||
Sbjct: 58743 ccatttagttcgttggaagagata 58766
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>gb|AC087710.8| Homo sapiens chromosome 8, clone RP11-11A18, complete sequence
          Length = 167139

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 121    ctgcactgcaaccatctagt 140
              ||||||||||||||||||||
Sbjct: 120266 ctgcactgcaaccatctagt 120247
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 31       ccgctggatgtttcatgagcttat 54
                ||||||||||||||||||| ||||
Sbjct: 12745787 ccgctggatgtttcatgagattat 12745764
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>dbj|AP002979.2| Homo sapiens genomic DNA, chromosome 8q23, clone:KB1057H12
          Length = 153647

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 121    ctgcactgcaaccatctagt 140
              ||||||||||||||||||||
Sbjct: 130028 ctgcactgcaaccatctagt 130047
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>gb|AC152821.5| Mus musculus BAC clone RP24-366H21 from chromosome y, complete sequence
          Length = 179613

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 118   attctgcactgcaaccatctagt 140
             |||||||||| ||||||||||||
Sbjct: 60249 attctgcactacaaccatctagt 60227
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>gb|AC135808.4| Mus musculus BAC clone RP24-316N5 from chromosome Y, complete sequence
          Length = 149744

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 118   attctgcactgcaaccatctagt 140
             |||||||||| ||||||||||||
Sbjct: 57147 attctgcactacaaccatctagt 57169
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>gb|AC123565.6| Homo sapiens 3 BAC RP11-539J20 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 156163

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 112   cactttattctgcactgca 130
             |||||||||||||||||||
Sbjct: 81218 cactttattctgcactgca 81200
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>gb|AC146141.2| Pan troglodytes BAC clone RP43-3A23 from 7, complete sequence
          Length = 182547

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 67     tccataaatacaactcttt 85
              |||||||||||||||||||
Sbjct: 109762 tccataaatacaactcttt 109780
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>emb|AL096776.12|HSJ646B12 Human DNA sequence from clone RP4-646B12 on chromosome 1q42.11-42.3,
             complete sequence
          Length = 90744

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 56    catagggcacatccataaa 74
             |||||||||||||||||||
Sbjct: 30491 catagggcacatccataaa 30473
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>gb|AC124907.3| Equus caballus clone CH241-409I22, complete sequence
          Length = 202157

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 114   ctttattctgcactgcaac 132
             |||||||||||||||||||
Sbjct: 93277 ctttattctgcactgcaac 93295
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>gb|DP000004.1| Lemur catta target 1 genomic scaffold
          Length = 1399362

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 114    ctttattctgcactgcaac 132
              |||||||||||||||||||
Sbjct: 417250 ctttattctgcactgcaac 417268
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>gb|AC159235.2| Mus musculus BAC clone RP24-432L4 from chromosome ul, complete sequence
          Length = 133340

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 118   attctgcactgcaaccatctagt 140
             |||||||||| ||||||||||||
Sbjct: 23433 attctgcactacaaccatctagt 23411
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>gb|AC068888.35| Homo sapiens 12 BAC RP11-983P16 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 95824

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 67    tccataaatacaactcttt 85
             |||||||||||||||||||
Sbjct: 48826 tccataaatacaactcttt 48844
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>gb|AC023108.4| Homo sapiens BAC clone RP11-121I13 from 2, complete sequence
          Length = 173794

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 67    tccataaatacaactcttt 85
             |||||||||||||||||||
Sbjct: 23025 tccataaatacaactcttt 23043
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>gb|AC123970.3| Lemur catta clone LB2-159J16, complete sequence
          Length = 183268

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 114    ctttattctgcactgcaac 132
              |||||||||||||||||||
Sbjct: 151299 ctttattctgcactgcaac 151317
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>emb|BX890639.3| Mouse DNA sequence from clone RP23-290E8 on chromosome X, complete
             sequence
          Length = 150029

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 70    ataaatacaactctttgaa 88
             |||||||||||||||||||
Sbjct: 23736 ataaatacaactctttgaa 23718
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>dbj|BA000016.3| Clostridium perfringens str. 13 DNA, complete genome
          Length = 3031430

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 65      catccataaatacaactct 83
               |||||||||||||||||||
Sbjct: 2400239 catccataaatacaactct 2400257
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>emb|AL929534.12| Mouse DNA sequence from clone RP23-275L13 on chromosome 2, complete
             sequence
          Length = 190466

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 48    agcttatacatagggcaca 66
             |||||||||||||||||||
Sbjct: 61852 agcttatacatagggcaca 61834
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>dbj|AP005059.2| Homo sapiens genomic DNA, chromosome 18 clone:RP11-286N3, complete
             sequence
          Length = 213005

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 66    atccataaatacaactctt 84
             |||||||||||||||||||
Sbjct: 96031 atccataaatacaactctt 96049
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>gb|DP000020.1| Equus caballus target 1 genomic scaffold
          Length = 1907055

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 114    ctttattctgcactgcaac 132
              |||||||||||||||||||
Sbjct: 601471 ctttattctgcactgcaac 601489


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,474,661
Number of Sequences: 3902068
Number of extensions: 1474661
Number of successful extensions: 104147
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 103968
Number of HSP's gapped (non-prelim): 179
length of query: 199
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 177
effective length of database: 17,147,199,772
effective search space: 3035054359644
effective search space used: 3035054359644
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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