| Clone Name | bags39c06 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK060793.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-E06, full insert sequence Length = 1898 Score = 656 bits (331), Expect = 0.0 Identities = 540/609 (88%), Gaps = 3/609 (0%) Strand = Plus / Plus Query: 32 agccccatggatgtgctctgccaggttggtttggatgggattcggatgcttgatcccaac 91 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 738 agccccatggatgtgctctgccaggttggtttggatgggattcggatgcttgatcccaat 797 Query: 92 actagtaggacactgaggatatatccccttgaaactgtaacgagatgggatgtattagat 151 |||||||||||| |||| ||||| ||||||||||||||||| |||||||||||||||||| Sbjct: 798 actagtaggacattgagaatatacccccttgaaactgtaactagatgggatgtattagat 857 Query: 152 tcttctgtatttgccttttggtcgaagagttcagttgatcttgaagcaagaagaataagg 211 |||||| | |||||||||||||| ||||| ||||||||| |||||||||||||||||||| Sbjct: 858 tcttctatctttgccttttggtctaagagctcagttgattttgaagcaagaagaataagg 917 Query: 212 ctgaagtcaagcagctatacaacaaacaccattctggacacggtgacagctgcctctgtt 271 |||||||||| |||||||||||| ||||||||||| ||||| |||||||| || ||| Sbjct: 918 ctgaagtcaaacagctatacaaccaacaccattcttgacactgtgacagccgcgagtgtg 977 Query: 272 cagttcaaggagatg---gcaagcagcgtttcgagaagtaaagcagctgctgatcctgcc 328 ||||||||||| ||| | ||| ||| |||||||||||| |||| ||||||| ||||| Sbjct: 978 cagttcaaggaaatgggcggaagtagcatttcgagaagtagagcaattgctgatgctgcc 1037 Query: 329 agcccttctgaacagcaaaatgaaaagaggaggaatttccttgattggaggaacttagtg 388 | ||| ||||||| |||||||| | ||||| |||||||||||||||||||||||| || Sbjct: 1038 aaacctcctgaacaacaaaatgataggaggaaaaatttccttgattggaggaacttaatg 1097 Query: 389 aagcctgtgactgaggagaaagaccattgggtcccagatgaagcggtcaataaatgcacg 448 ||||| ||| |||||||||||||| ||||||||||||||||| |||| ||||||||| Sbjct: 1098 aagcccatgaacgaggagaaagaccactgggtcccagatgaagccgtcactaaatgcaca 1157 Query: 449 gcctgtgcaggagatttcagtgccttcaaccgcaggcatcattgtcggaactgcggcgat 508 || ||| ||| |||||||||||| ||||| ||||||||||| ||||| || || || ||| Sbjct: 1158 gcatgtacagcagatttcagtgctttcaatcgcaggcatcactgtcgaaattgtggtgat 1217 Query: 509 attttctgcgataagtgcacccagggaaggactcctctaacttcagatgcagattctcaa 568 ||||||||||| ||||||||||||||||| |||||| ||||| | ||||| ||| ||||| Sbjct: 1218 attttctgcgacaagtgcacccagggaagaactcctttaactactgatgctgatgctcaa 1277 Query: 569 ccagtccgagtttgtgacagatgcatggctgaagtttctcgaagactgagcagtgcaaag 628 ||||| |||||||||||||||||||||||||||||||||| |||||||| || ||||| | Sbjct: 1278 ccagtgcgagtttgtgacagatgcatggctgaagtttctcaaagactgaacaatgcaagg 1337 Query: 629 gaagcggca 637 ||||||||| Sbjct: 1338 gaagcggca 1346
>dbj|AK066985.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013092E10, full insert sequence Length = 1876 Score = 648 bits (327), Expect = 0.0 Identities = 539/609 (88%), Gaps = 3/609 (0%) Strand = Plus / Plus Query: 32 agccccatggatgtgctctgccaggttggtttggatgggattcggatgcttgatcccaac 91 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 698 agccccatggatgtgctctgccaggttggtttggatgggattcggatgcttgatcccaat 757 Query: 92 actagtaggacactgaggatatatccccttgaaactgtaacgagatgggatgtattagat 151 |||||||||||| |||| ||||| ||||||||||||||||| |||||||||||||||||| Sbjct: 758 actagtaggacattgagaatatacccccttgaaactgtaactagatgggatgtattagat 817 Query: 152 tcttctgtatttgccttttggtcgaagagttcagttgatcttgaagcaagaagaataagg 211 |||||| | |||||||||||||| ||||| ||||||||| |||||||||||||||||||| Sbjct: 818 tcttctatctttgccttttggtctaagagctcagttgattttgaagcaagaagaataagg 877 Query: 212 ctgaagtcaagcagctatacaacaaacaccattctggacacggtgacagctgcctctgtt 271 |||||||||| |||||||||||| ||||||||||| ||||| |||||||| || ||| Sbjct: 878 ctgaagtcaaacagctatacaaccaacaccattcttgacactgtgacagccgcgagtgtg 937 Query: 272 cagttcaaggagatg---gcaagcagcgtttcgagaagtaaagcagctgctgatcctgcc 328 ||||||||||| ||| | ||| ||| |||||||||||| |||| ||||||| ||||| Sbjct: 938 cagttcaaggaaatgggcggaagtagcatttcgagaagtagagcaattgctgatgctgcc 997 Query: 329 agcccttctgaacagcaaaatgaaaagaggaggaatttccttgattggaggaacttagtg 388 | ||| ||||||| |||||||| | ||||| |||||||||||||||||||||||| || Sbjct: 998 aaacctcctgaacaacaaaatgataggaggaaaaatttccttgattggaggaacttaatg 1057 Query: 389 aagcctgtgactgaggagaaagaccattgggtcccagatgaagcggtcaataaatgcacg 448 ||||| ||| |||||||||||||| ||||||||||||||||| |||| ||||||||| Sbjct: 1058 aagcccatgaacgaggagaaagaccactgggtcccagatgaagccgtcactaaatgcaca 1117 Query: 449 gcctgtgcaggagatttcagtgccttcaaccgcaggcatcattgtcggaactgcggcgat 508 || ||| ||| |||||||||||| ||||| ||||||||||| ||||| || || || ||| Sbjct: 1118 gcatgtacagcagatttcagtgctttcaatcgcaggcatcactgtcgaaattgtggtgat 1177 Query: 509 attttctgcgataagtgcacccagggaaggactcctctaacttcagatgcagattctcaa 568 ||||||||||| ||||||||||||||||| |||||| ||||| | ||||| ||| ||||| Sbjct: 1178 attttctgcgacaagtgcacccagggaagaactcctttaactactgatgctgatgctcaa 1237 Query: 569 ccagtccgagtttgtgacagatgcatggctgaagtttctcgaagactgagcagtgcaaag 628 ||||| |||||||||||||| ||||||||||||||||||| |||||||| || ||||| | Sbjct: 1238 ccagtgcgagtttgtgacagttgcatggctgaagtttctcaaagactgaacaatgcaagg 1297 Query: 629 gaagcggca 637 ||||||||| Sbjct: 1298 gaagcggca 1306
>dbj|AK119624.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-117-H09, full insert sequence Length = 1896 Score = 632 bits (319), Expect = e-178 Identities = 537/609 (88%), Gaps = 3/609 (0%) Strand = Plus / Plus Query: 32 agccccatggatgtgctctgccaggttggtttggatgggattcggatgcttgatcccaac 91 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 736 agccccatggatgtgctctgccaggttggtttggatgggattcggatgcttgatcccaat 795 Query: 92 actagtaggacactgaggatatatccccttgaaactgtaacgagatgggatgtattagat 151 |||||||||||| |||| ||||| ||||||||||||||||| ||||||| |||||||||| Sbjct: 796 actagtaggacattgagaatatacccccttgaaactgtaactagatggggtgtattagat 855 Query: 152 tcttctgtatttgccttttggtcgaagagttcagttgatcttgaagcaagaagaataagg 211 |||||| | |||||||||||||| ||||| ||||||||| |||||||||||||||||||| Sbjct: 856 tcttctatctttgccttttggtctaagagctcagttgattttgaagcaagaagaataagg 915 Query: 212 ctgaagtcaagcagctatacaacaaacaccattctggacacggtgacagctgcctctgtt 271 |||||||||| |||||||||||| ||||||||||| ||||| ||| |||| || ||| Sbjct: 916 ctgaagtcaaacagctatacaaccaacaccattcttgacactgtgtcagccgcgagtgtg 975 Query: 272 cagttcaaggagatg---gcaagcagcgtttcgagaagtaaagcagctgctgatcctgcc 328 ||||||||||| ||| | ||| ||| |||||||||||| |||| ||||||| ||||| Sbjct: 976 cagttcaaggaaatgggcggaagtagcatttcgagaagtagagcaattgctgatgctgcc 1035 Query: 329 agcccttctgaacagcaaaatgaaaagaggaggaatttccttgattggaggaacttagtg 388 | ||| ||||||| |||||||| | ||||| |||||||||||||||||||||||| || Sbjct: 1036 aaacctcctgaacaacaaaatgataggaggaaaaatttccttgattggaggaacttaatg 1095 Query: 389 aagcctgtgactgaggagaaagaccattgggtcccagatgaagcggtcaataaatgcacg 448 ||||| ||| |||||||||||||| ||||||||||||||||| |||| ||||||||| Sbjct: 1096 aagcccatgaacgaggagaaagaccactgggtcccagatgaagccgtcactaaatgcaca 1155 Query: 449 gcctgtgcaggagatttcagtgccttcaaccgcaggcatcattgtcggaactgcggcgat 508 || ||| ||| |||||||||||| ||||| |||||||| || ||||| || || || ||| Sbjct: 1156 gcatgtacagcagatttcagtgctttcaatcgcaggcaccactgtcgaaattgtggtgat 1215 Query: 509 attttctgcgataagtgcacccagggaaggactcctctaacttcagatgcagattctcaa 568 ||||||||||| ||||||||||||||||| |||||| ||||| | ||||| ||| ||||| Sbjct: 1216 attttctgcgacaagtgcacccagggaagaactcctttaactactgatgctgatgctcaa 1275 Query: 569 ccagtccgagtttgtgacagatgcatggctgaagtttctcgaagactgagcagtgcaaag 628 ||||| |||||||||||||||||||||||||||||||||| |||||||| || ||||| | Sbjct: 1276 ccagtgcgagtttgtgacagatgcatggctgaagtttctcaaagactgaacaatgcaagg 1335 Query: 629 gaagcggca 637 ||||||||| Sbjct: 1336 gaagcggca 1344
>gb|AY106218.1| Zea mays PCO136801 mRNA sequence Length = 891 Score = 285 bits (144), Expect = 9e-74 Identities = 237/268 (88%) Strand = Plus / Plus Query: 336 ctgaacagcaaaatgaaaagaggaggaatttccttgattggaggaacttagtgaagcctg 395 |||| ||||||||||| | || || |||||||||||||||||||| ||| |||||||| Sbjct: 45 ctgagcagcaaaatgagaggaagaaaaatttccttgattggaggaatttaatgaagccta 104 Query: 396 tgactgaggagaaagaccattgggtcccagatgaagcggtcaataaatgcacggcctgtg 455 | | |||||||||||| || ||||||||||||||||| |||| || ||||| || || | Sbjct: 105 ttaatgaggagaaagatcactgggtcccagatgaagctgtcagcaagtgcacagcatgcg 164 Query: 456 caggagatttcagtgccttcaaccgcaggcatcattgtcggaactgcggcgatattttct 515 ||| |||||||||||| ||||||||||||||||| ||||| ||||| || |||||||||| Sbjct: 165 cagcagatttcagtgctttcaaccgcaggcatcactgtcgaaactgtggtgatattttct 224 Query: 516 gcgataagtgcacccagggaaggactcctctaacttcagatgcagattctcaaccagtcc 575 |||||||||||||||||||||| |||||||| ||| ||||||||||| |||||||||| | Sbjct: 225 gcgataagtgcacccagggaagaactcctctgactacagatgcagatgctcaaccagttc 284 Query: 576 gagtttgtgacagatgcatggctgaagt 603 |||||||||||||||||||||||||||| Sbjct: 285 gagtttgtgacagatgcatggctgaagt 312
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 165 bits (83), Expect = 2e-37 Identities = 110/119 (92%) Strand = Plus / Plus Query: 143 gtattagattcttctgtatttgccttttggtcgaagagttcagttgatcttgaagcaaga 202 ||||||||||||||| | |||||||||||||| ||||| ||||||||| ||||||||||| Sbjct: 30248789 gtattagattcttctatctttgccttttggtctaagagctcagttgattttgaagcaaga 30248848 Query: 203 agaataaggctgaagtcaagcagctatacaacaaacaccattctggacacggtgacagc 261 ||||||||||||||||||| |||||||||||| ||||||||||| ||||| |||||||| Sbjct: 30248849 agaataaggctgaagtcaaacagctatacaaccaacaccattcttgacactgtgacagc 30248907 Score = 145 bits (73), Expect = 2e-31 Identities = 88/93 (94%) Strand = Plus / Plus Query: 53 caggttggtttggatgggattcggatgcttgatcccaacactagtaggacactgaggata 112 |||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||| Sbjct: 30248600 caggttggtttggatgggattcggatgcttgatcccaatactagtaggacattgagaata 30248659 Query: 113 tatccccttgaaactgtaacgagatgggatgta 145 || ||||||||||||||||| |||||||||||| Sbjct: 30248660 tacccccttgaaactgtaactagatgggatgta 30248692 Score = 121 bits (61), Expect = 3e-24 Identities = 100/113 (88%) Strand = Plus / Plus Query: 484 gcatcattgtcggaactgcggcgatattttctgcgataagtgcacccagggaaggactcc 543 |||||| ||||| || || || |||||||||||||| ||||||||||||||||| ||||| Sbjct: 30250518 gcatcactgtcgaaattgtggtgatattttctgcgacaagtgcacccagggaagaactcc 30250577 Query: 544 tctaacttcagatgcagattctcaaccagtccgagtttgtgacagatgcatgg 596 | ||||| | ||||| ||| |||||||||| |||||||||||||||||||||| Sbjct: 30250578 tttaactactgatgctgatgctcaaccagtgcgagtttgtgacagatgcatgg 30250630 Score = 103 bits (52), Expect = 7e-19 Identities = 106/124 (85%) Strand = Plus / Plus Query: 297 tttcgagaagtaaagcagctgctgatcctgccagcccttctgaacagcaaaatgaaaaga 356 |||||||||||| |||| ||||||| |||||| ||| ||||||| |||||||| | || Sbjct: 30249041 tttcgagaagtagagcaattgctgatgctgccaaacctcctgaacaacaaaatgatagga 30249100 Query: 357 ggaggaatttccttgattggaggaacttagtgaagcctgtgactgaggagaaagaccatt 416 ||| |||||||||||||||||||||||| ||||||| ||| |||||||||||||| | Sbjct: 30249101 ggaaaaatttccttgattggaggaacttaatgaagcccatgaacgaggagaaagaccact 30249160 Query: 417 gggt 420 |||| Sbjct: 30249161 gggt 30249164 Score = 69.9 bits (35), Expect = 1e-08 Identities = 59/67 (88%) Strand = Plus / Plus Query: 418 ggtcccagatgaagcggtcaataaatgcacggcctgtgcaggagatttcagtgccttcaa 477 ||||||||||||||| |||| ||||||||| || ||| ||| |||||||||||| ||||| Sbjct: 30250374 ggtcccagatgaagccgtcactaaatgcacagcatgtacagcagatttcagtgctttcaa 30250433 Query: 478 ccgcagg 484 |||||| Sbjct: 30250434 tcgcagg 30250440 Score = 54.0 bits (27), Expect = 6e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 595 ggctgaagtttctcgaagactgagcagtgcaaaggaagcggca 637 |||||||||||||| |||||||| || ||||| |||||||||| Sbjct: 30251232 ggctgaagtttctcaaagactgaacaatgcaagggaagcggca 30251274 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 32 agccccatggatgtgctctgccaggt 57 |||||||||||||||||||||||||| Sbjct: 30247323 agccccatggatgtgctctgccaggt 30247348
>dbj|AP007231.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0535F09 Length = 175050 Score = 165 bits (83), Expect = 2e-37 Identities = 110/119 (92%) Strand = Plus / Plus Query: 143 gtattagattcttctgtatttgccttttggtcgaagagttcagttgatcttgaagcaaga 202 ||||||||||||||| | |||||||||||||| ||||| ||||||||| ||||||||||| Sbjct: 115124 gtattagattcttctatctttgccttttggtctaagagctcagttgattttgaagcaaga 115183 Query: 203 agaataaggctgaagtcaagcagctatacaacaaacaccattctggacacggtgacagc 261 ||||||||||||||||||| |||||||||||| ||||||||||| ||||| |||||||| Sbjct: 115184 agaataaggctgaagtcaaacagctatacaaccaacaccattcttgacactgtgacagc 115242 Score = 145 bits (73), Expect = 2e-31 Identities = 88/93 (94%) Strand = Plus / Plus Query: 53 caggttggtttggatgggattcggatgcttgatcccaacactagtaggacactgaggata 112 |||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||| Sbjct: 114935 caggttggtttggatgggattcggatgcttgatcccaatactagtaggacattgagaata 114994 Query: 113 tatccccttgaaactgtaacgagatgggatgta 145 || ||||||||||||||||| |||||||||||| Sbjct: 114995 tacccccttgaaactgtaactagatgggatgta 115027 Score = 121 bits (61), Expect = 3e-24 Identities = 100/113 (88%) Strand = Plus / Plus Query: 484 gcatcattgtcggaactgcggcgatattttctgcgataagtgcacccagggaaggactcc 543 |||||| ||||| || || || |||||||||||||| ||||||||||||||||| ||||| Sbjct: 116853 gcatcactgtcgaaattgtggtgatattttctgcgacaagtgcacccagggaagaactcc 116912 Query: 544 tctaacttcagatgcagattctcaaccagtccgagtttgtgacagatgcatgg 596 | ||||| | ||||| ||| |||||||||| |||||||||||||||||||||| Sbjct: 116913 tttaactactgatgctgatgctcaaccagtgcgagtttgtgacagatgcatgg 116965 Score = 103 bits (52), Expect = 7e-19 Identities = 106/124 (85%) Strand = Plus / Plus Query: 297 tttcgagaagtaaagcagctgctgatcctgccagcccttctgaacagcaaaatgaaaaga 356 |||||||||||| |||| ||||||| |||||| ||| ||||||| |||||||| | || Sbjct: 115376 tttcgagaagtagagcaattgctgatgctgccaaacctcctgaacaacaaaatgatagga 115435 Query: 357 ggaggaatttccttgattggaggaacttagtgaagcctgtgactgaggagaaagaccatt 416 ||| |||||||||||||||||||||||| ||||||| ||| |||||||||||||| | Sbjct: 115436 ggaaaaatttccttgattggaggaacttaatgaagcccatgaacgaggagaaagaccact 115495 Query: 417 gggt 420 |||| Sbjct: 115496 gggt 115499 Score = 69.9 bits (35), Expect = 1e-08 Identities = 59/67 (88%) Strand = Plus / Plus Query: 418 ggtcccagatgaagcggtcaataaatgcacggcctgtgcaggagatttcagtgccttcaa 477 ||||||||||||||| |||| ||||||||| || ||| ||| |||||||||||| ||||| Sbjct: 116709 ggtcccagatgaagccgtcactaaatgcacagcatgtacagcagatttcagtgctttcaa 116768 Query: 478 ccgcagg 484 |||||| Sbjct: 116769 tcgcagg 116775 Score = 54.0 bits (27), Expect = 6e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 595 ggctgaagtttctcgaagactgagcagtgcaaaggaagcggca 637 |||||||||||||| |||||||| || ||||| |||||||||| Sbjct: 117567 ggctgaagtttctcaaagactgaacaatgcaagggaagcggca 117609 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 32 agccccatggatgtgctctgccaggt 57 |||||||||||||||||||||||||| Sbjct: 113658 agccccatggatgtgctctgccaggt 113683
>ref|XM_478798.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1954 Score = 141 bits (71), Expect = 3e-30 Identities = 161/191 (84%) Strand = Plus / Plus Query: 41 gatgtgctctgccaggttggtttggatgggattcggatgcttgatcccaacactagtagg 100 |||||||| || ||| ||||| ||||||| ||||| ||||||||||||| ||| || ||| Sbjct: 892 gatgtgctttgtcagattggtctggatggaattcgcatgcttgatcccagcacaagcagg 951 Query: 101 acactgaggatatatccccttgaaactgtaacgagatgggatgtattagattcttctgta 160 ||||| ||||| ||||||||||| || | || ||||||||||| |||||||| | ||| Sbjct: 952 acactaaggatttatccccttgatacactgacaagatgggatgttttagattcaaccgta 1011 Query: 161 tttgccttttggtcgaagagttcagttgatcttgaagcaagaagaataaggctgaagtca 220 ||||| |||||| |||||| | |||||||| ||||||||| |||||||| |||||||| Sbjct: 1012 tttgcattttgggcgaagactccagttgattttgaagcaaagcgaataaggttgaagtca 1071 Query: 221 agcagctatac 231 | ||||||||| Sbjct: 1072 aacagctatac 1082 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Plus Query: 572 gtccgagtttgtgacagatgcatggctgaagtttctcgaagactgagcagtgcaaaggaa 631 |||||||||||||| ||||||||||| ||||| |||| ||| || |||| ||| ||||| Sbjct: 1414 gtccgagtttgtgatagatgcatggcagaagtctctcaaaggcttagcatagcacaggaa 1473 Query: 632 gc 633 || Sbjct: 1474 gc 1475 Score = 44.1 bits (22), Expect = 0.56 Identities = 25/26 (96%) Strand = Plus / Plus Query: 476 aaccgcaggcatcattgtcggaactg 501 |||||||||||||||||| ||||||| Sbjct: 1318 aaccgcaggcatcattgtaggaactg 1343 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 406 gaaagaccattgggtcccagatga 429 ||||||||||||||| |||||||| Sbjct: 1248 gaaagaccattgggttccagatga 1271
>dbj|AK122181.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033149G04, full insert sequence Length = 1535 Score = 141 bits (71), Expect = 3e-30 Identities = 161/191 (84%) Strand = Plus / Plus Query: 41 gatgtgctctgccaggttggtttggatgggattcggatgcttgatcccaacactagtagg 100 |||||||| || ||| ||||| ||||||| ||||| ||||||||||||| ||| || ||| Sbjct: 473 gatgtgctttgtcagattggtctggatggaattcgcatgcttgatcccagcacaagcagg 532 Query: 101 acactgaggatatatccccttgaaactgtaacgagatgggatgtattagattcttctgta 160 ||||| ||||| ||||||||||| || | || ||||||||||| |||||||| | ||| Sbjct: 533 acactaaggatttatccccttgatacactgacaagatgggatgttttagattcaaccgta 592 Query: 161 tttgccttttggtcgaagagttcagttgatcttgaagcaagaagaataaggctgaagtca 220 ||||| |||||| |||||| | |||||||| ||||||||| |||||||| |||||||| Sbjct: 593 tttgcattttgggcgaagactccagttgattttgaagcaaagcgaataaggttgaagtca 652 Query: 221 agcagctatac 231 | ||||||||| Sbjct: 653 aacagctatac 663 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Plus Query: 572 gtccgagtttgtgacagatgcatggctgaagtttctcgaagactgagcagtgcaaaggaa 631 |||||||||||||| ||||||||||| ||||| |||| ||| || |||| ||| ||||| Sbjct: 995 gtccgagtttgtgatagatgcatggcagaagtctctcaaaggcttagcatagcacaggaa 1054 Query: 632 gc 633 || Sbjct: 1055 gc 1056 Score = 44.1 bits (22), Expect = 0.56 Identities = 25/26 (96%) Strand = Plus / Plus Query: 476 aaccgcaggcatcattgtcggaactg 501 |||||||||||||||||| ||||||| Sbjct: 899 aaccgcaggcatcattgtaggaactg 924 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 406 gaaagaccattgggtcccagatga 429 ||||||||||||||| |||||||| Sbjct: 829 gaaagaccattgggttccagatga 852
>dbj|AK071682.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023108G06, full insert sequence Length = 1954 Score = 141 bits (71), Expect = 3e-30 Identities = 161/191 (84%) Strand = Plus / Plus Query: 41 gatgtgctctgccaggttggtttggatgggattcggatgcttgatcccaacactagtagg 100 |||||||| || ||| ||||| ||||||| ||||| ||||||||||||| ||| || ||| Sbjct: 892 gatgtgctttgtcagattggtctggatggaattcgcatgcttgatcccagcacaagcagg 951 Query: 101 acactgaggatatatccccttgaaactgtaacgagatgggatgtattagattcttctgta 160 ||||| ||||| ||||||||||| || | || ||||||||||| |||||||| | ||| Sbjct: 952 acactaaggatttatccccttgatacactgacaagatgggatgttttagattcaaccgta 1011 Query: 161 tttgccttttggtcgaagagttcagttgatcttgaagcaagaagaataaggctgaagtca 220 ||||| |||||| |||||| | |||||||| ||||||||| |||||||| |||||||| Sbjct: 1012 tttgcattttgggcgaagactccagttgattttgaagcaaagcgaataaggttgaagtca 1071 Query: 221 agcagctatac 231 | ||||||||| Sbjct: 1072 aacagctatac 1082 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Plus Query: 572 gtccgagtttgtgacagatgcatggctgaagtttctcgaagactgagcagtgcaaaggaa 631 |||||||||||||| ||||||||||| ||||| |||| ||| || |||| ||| ||||| Sbjct: 1414 gtccgagtttgtgatagatgcatggcagaagtctctcaaaggcttagcatagcacaggaa 1473 Query: 632 gc 633 || Sbjct: 1474 gc 1475 Score = 44.1 bits (22), Expect = 0.56 Identities = 25/26 (96%) Strand = Plus / Plus Query: 476 aaccgcaggcatcattgtcggaactg 501 |||||||||||||||||| ||||||| Sbjct: 1318 aaccgcaggcatcattgtaggaactg 1343 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 406 gaaagaccattgggtcccagatga 429 ||||||||||||||| |||||||| Sbjct: 1248 gaaagaccattgggttccagatga 1271
>gb|AF004816.1|AF004816 Triticum aestivum unknown mRNA, complete cds Length = 1862 Score = 117 bits (59), Expect = 5e-23 Identities = 158/191 (82%) Strand = Plus / Plus Query: 41 gatgtgctctgccaggttggtttggatgggattcggatgcttgatcccaacactagtagg 100 |||||||| |||||| ||||| ||||||| || || ||||||||||||| ||| || ||| Sbjct: 808 gatgtgctttgccagattggtctggatggaatccgcatgcttgatcccagcacaagcagg 867 Query: 101 acactgaggatatatccccttgaaactgtaacgagatgggatgtattagattcttctgta 160 || || ||||| ||||||||||| || | |||| |||||| || || ||||| ||||| Sbjct: 868 accctaaggatttatccccttgatacactgacgaaatgggaggttttggattcaactgta 927 Query: 161 tttgccttttggtcgaagagttcagttgatcttgaagcaagaagaataaggctgaagtca 220 ||||| ||||| | |||| |||||| ||| ||||||||| ||||||||||||||||| Sbjct: 928 tttgcgatttgggcaaagacttcagtagattttgaagcaaagcgaataaggctgaagtca 987 Query: 221 agcagctatac 231 | ||||||||| Sbjct: 988 aacagctatac 998 Score = 71.9 bits (36), Expect = 2e-09 Identities = 108/132 (81%) Strand = Plus / Plus Query: 406 gaaagaccattgggtcccagatgaagcggtcaataaatgcacggcctgtgcaggagattt 465 |||||| |||||||| |||||||| || | || |||||| | | ||||| || ||||| Sbjct: 1164 gaaagatcattgggttccagatgaggctgctaagaaatgccagtcttgtgctggtgattt 1223 Query: 466 cagtgccttcaaccgcaggcatcattgtcggaactgcggcgatattttctgcgataagtg 525 |||| ||||||||||||||||||||| ||||||| ||||| || ||||| ||||| || Sbjct: 1224 cagtcatttcaaccgcaggcatcattgtaggaactgtggcgagatcttctgtgataaatg 1283 Query: 526 cacccagggaag 537 || ||| ||||| Sbjct: 1284 cagccaaggaag 1295 Score = 42.1 bits (21), Expect = 2.2 Identities = 33/37 (89%) Strand = Plus / Plus Query: 572 gtccgagtttgtgacagatgcatggctgaagtttctc 608 ||||||||||| || ||||||||||| || ||||||| Sbjct: 1330 gtccgagtttgcgatagatgcatggcagaggtttctc 1366
>emb|X89865.1|PDUNKNOWN Phoenix dactylifera mRNA for hypothetical protein (ORF1) Length = 1456 Score = 107 bits (54), Expect = 4e-20 Identities = 189/234 (80%) Strand = Plus / Plus Query: 400 tgaggagaaagaccattgggtcccagatgaagcggtcaataaatgcacggcctgtgcagg 459 ||||||||||||||||||||| ||||||||||| |||| |||||| || | |||| || Sbjct: 628 tgaggagaaagaccattgggttccagatgaagcagtcagtaaatgtacatcttgtggagc 687 Query: 460 agatttcagtgccttcaaccgcaggcatcattgtcggaactgcggcgatattttctgcga 519 |||||| | || || |||||||||||||| ||| ||| || ||||||||||| || Sbjct: 688 agattttggagcttttgttcgcaggcatcattgcaggagctgtggtgatattttctgtga 747 Query: 520 taagtgcacccagggaaggactcctctaacttcagatgcagattctcaaccagtccgagt 579 |||||||| ||||| || | | |||| ||| |||||| | || |||| |||||| |||| Sbjct: 748 caagtgcacacagggtagaattgctcttactgcagatgaaaatgctcagccagtcagagt 807 Query: 580 ttgtgacagatgcatggctgaagtttctcgaagactgagcagtgcaaaggaagc 633 ||||| ||||||||||| |||||||||| || ||||| |||||||||||| Sbjct: 808 gtgtgatagatgcatggcagaagtttctcacaggttgagctatgcaaaggaagc 861 Score = 103 bits (52), Expect = 7e-19 Identities = 202/252 (80%) Strand = Plus / Plus Query: 36 ccatggatgtgctctgccaggttggtttggatgggattcggatgcttgatcccaacacta 95 |||||||||| ||||||||| ||||||||||||| ||||| ||||||||||| | | || Sbjct: 258 ccatggatgtcctctgccagattggtttggatggaattcgtatgcttgatccaagctctt 317 Query: 96 gtaggacactgaggatatatccccttgaaactgtaacgagatgggatgtattagattctt 155 || ||| |||||||||| |||||||| || || || |||||||| ||| |||||| | Sbjct: 318 ccagaacattgaggatatacccccttgagaccgtgacaagatgggacgtaacagattcat 377 Query: 156 ctgtatttgccttttggtcgaagagttcagttgatcttgaagcaagaagaataaggctga 215 | | ||| |||| ||||| ||||| || |||||| |||| |||| | ||||||||| Sbjct: 378 ccatctttaccttctggtctaagagctctgttgatattgagccaaggcgcataaggctgc 437 Query: 216 agtcaagcagctatacaacaaacaccattctggacacggtgacagctgcctctgttcagt 275 |||| | ||||||||| || || ||||| || ||||| || |||||||| | || ||| Sbjct: 438 agtctaacagctatactaccaataccatacttgacacagtaacagctgcaacagtgcagc 497 Query: 276 tcaaggagatgg 287 |||||||||||| Sbjct: 498 tcaaggagatgg 509
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 73.8 bits (37), Expect = 6e-10 Identities = 76/89 (85%) Strand = Plus / Plus Query: 57 ttggtttggatgggattcggatgcttgatcccaacactagtaggacactgaggatatatc 116 ||||| ||||||| ||||| ||||||||||||| ||| || |||||||| ||||| |||| Sbjct: 23117228 ttggtctggatggaattcgcatgcttgatcccagcacaagcaggacactaaggatttatc 23117287 Query: 117 cccttgaaactgtaacgagatgggatgta 145 ||||||| || | || |||||||||||| Sbjct: 23117288 cccttgatacactgacaagatgggatgta 23117316 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 572 gtccgagtttgtgacagatgcatgg 596 |||||||||||||| |||||||||| Sbjct: 23118884 gtccgagtttgtgatagatgcatgg 23118908
>dbj|AP003845.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1699_E05 Length = 170666 Score = 73.8 bits (37), Expect = 6e-10 Identities = 76/89 (85%) Strand = Plus / Plus Query: 57 ttggtttggatgggattcggatgcttgatcccaacactagtaggacactgaggatatatc 116 ||||| ||||||| ||||| ||||||||||||| ||| || |||||||| ||||| |||| Sbjct: 61412 ttggtctggatggaattcgcatgcttgatcccagcacaagcaggacactaaggatttatc 61471 Query: 117 cccttgaaactgtaacgagatgggatgta 145 ||||||| || | || |||||||||||| Sbjct: 61472 cccttgatacactgacaagatgggatgta 61500 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 572 gtccgagtttgtgacagatgcatgg 596 |||||||||||||| |||||||||| Sbjct: 63068 gtccgagtttgtgatagatgcatgg 63092
>ref|NM_101865.2| Arabidopsis thaliana zinc ion binding AT1G20110 mRNA, complete cds Length = 2118 Score = 48.1 bits (24), Expect = 0.036 Identities = 39/44 (88%) Strand = Plus / Plus Query: 389 aagcctgtgactgaggagaaagaccattgggtcccagatgaagc 432 |||||||| | |||||||||||| |||||||| || |||||||| Sbjct: 1396 aagcctgttaatgaggagaaagatcattgggtacctgatgaagc 1439
>gb|AY143942.1| Arabidopsis thaliana At1g20110/T20H2_10 mRNA, complete cds Length = 1806 Score = 48.1 bits (24), Expect = 0.036 Identities = 39/44 (88%) Strand = Plus / Plus Query: 389 aagcctgtgactgaggagaaagaccattgggtcccagatgaagc 432 |||||||| | |||||||||||| |||||||| || |||||||| Sbjct: 1327 aagcctgttaatgaggagaaagatcattgggtacctgatgaagc 1370
>gb|AF367315.1| Arabidopsis thaliana At1g20110/T20H2_10 mRNA, complete cds Length = 2060 Score = 48.1 bits (24), Expect = 0.036 Identities = 39/44 (88%) Strand = Plus / Plus Query: 389 aagcctgtgactgaggagaaagaccattgggtcccagatgaagc 432 |||||||| | |||||||||||| |||||||| || |||||||| Sbjct: 1396 aagcctgttaatgaggagaaagatcattgggtacctgatgaagc 1439
>gb|AF428277.1|AF428277 Arabidopsis thaliana At1g20110/T20H2_10 mRNA, complete cds Length = 2053 Score = 48.1 bits (24), Expect = 0.036 Identities = 39/44 (88%) Strand = Plus / Plus Query: 389 aagcctgtgactgaggagaaagaccattgggtcccagatgaagc 432 |||||||| | |||||||||||| |||||||| || |||||||| Sbjct: 1390 aagcctgttaatgaggagaaagatcattgggtacctgatgaagc 1433
>gb|AC146688.1| Gallus gallus BAC clone CH261-24P18 from chromosome unknown, complete sequence Length = 212571 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Plus Query: 390 agcctgtgactgaggagaaagac 412 ||||||||||||||||||||||| Sbjct: 117498 agcctgtgactgaggagaaagac 117520
>ref|XM_807867.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053509163.50) partial mRNA Length = 666 Score = 44.1 bits (22), Expect = 0.56 Identities = 31/34 (91%) Strand = Plus / Plus Query: 485 catcattgtcggaactgcggcgatattttctgcg 518 |||||||||||| |||| |||| ||||||||||| Sbjct: 193 catcattgtcggtactgtggcggtattttctgcg 226
>ref|XM_814646.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053506537.240) partial mRNA Length = 831 Score = 44.1 bits (22), Expect = 0.56 Identities = 31/34 (91%) Strand = Plus / Plus Query: 485 catcattgtcggaactgcggcgatattttctgcg 518 |||||||||||| |||| |||| ||||||||||| Sbjct: 157 catcattgtcggtactgtggcggtattttctgcg 190
>ref|XM_848285.1| PREDICTED: Canis familiaris similar to transmembrane protein 25 (LOC610739), mRNA Length = 1101 Score = 44.1 bits (22), Expect = 0.56 Identities = 25/26 (96%) Strand = Plus / Plus Query: 314 gctgctgatcctgccagcccttctga 339 ||||||| |||||||||||||||||| Sbjct: 39 gctgctgctcctgccagcccttctga 64
>gb|AC007250.2| Homo sapiens BAC clone RP11-334G22 from 2, complete sequence Length = 180557 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Plus Query: 181 ttcagttgatcttgaagcaaga 202 |||||||||||||||||||||| Sbjct: 54774 ttcagttgatcttgaagcaaga 54795
>ref|XM_508793.1| PREDICTED: Pan troglodytes similar to transmembrane protein 25; 0610039J01Rik (LOC451588), mRNA Length = 1029 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 315 ctgctgatcctgccagcccttctga 339 |||||| |||||||||||||||||| Sbjct: 64 ctgctgctcctgccagcccttctga 88
>gb|AC114653.11| Mus musculus chromosome 5, clone RP24-158G19, complete sequence Length = 164313 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 535 aaggactcctctaacttcaga 555 ||||||||||||||||||||| Sbjct: 12802 aaggactcctctaacttcaga 12822
>gb|BC051841.1| Homo sapiens transmembrane protein 25, mRNA (cDNA clone MGC:60150 IMAGE:5725777), complete cds Length = 2351 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 315 ctgctgatcctgccagcccttctga 339 |||||| |||||||||||||||||| Sbjct: 82 ctgctgctcctgccagcccttctga 106
>gb|AY358919.1| Homo sapiens clone DNA96850 ALPP2531 (UNQ2531) mRNA, complete cds Length = 2379 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 315 ctgctgatcctgccagcccttctga 339 |||||| |||||||||||||||||| Sbjct: 99 ctgctgctcctgccagcccttctga 123
>gb|AC004538.1| Homo sapiens PAC clone RP5-887P4 from 7, complete sequence Length = 83079 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 373 ttggaggaacttagtgaagcctgtg 397 ||||||||||||||||| ||||||| Sbjct: 19511 ttggaggaacttagtgaggcctgtg 19487
>gb|BC042896.1| Homo sapiens transmembrane protein 25, mRNA (cDNA clone MGC:34083 IMAGE:5168151), complete cds Length = 2491 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 315 ctgctgatcctgccagcccttctga 339 |||||| |||||||||||||||||| Sbjct: 93 ctgctgctcctgccagcccttctga 117
>emb|CR860250.1| Pongo pygmaeus mRNA; cDNA DKFZp468O1528 (from clone DKFZp468O1528) Length = 2301 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 315 ctgctgatcctgccagcccttctga 339 |||||| |||||||||||||||||| Sbjct: 108 ctgctgctcctgccagcccttctga 132
>gb|AC126283.3| Homo sapiens BAC clone RP11-602N24 from 4, complete sequence Length = 118642 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 332 ccttctgaacagcaaaatgaaaaga 356 ||||||| ||||||||||||||||| Sbjct: 65794 ccttctgcacagcaaaatgaaaaga 65818
>dbj|AK124814.1| Homo sapiens cDNA FLJ42824 fis, clone BRCAN2016433 Length = 3241 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 315 ctgctgatcctgccagcccttctga 339 |||||| |||||||||||||||||| Sbjct: 100 ctgctgctcctgccagcccttctga 124
>emb|CR621200.1| full-length cDNA clone CS0DL010YE19 of B cells (Ramos cell line) Cot 25-normalized of Homo sapiens (human) Length = 1376 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 315 ctgctgatcctgccagcccttctga 339 |||||| |||||||||||||||||| Sbjct: 71 ctgctgctcctgccagcccttctga 95
>dbj|AK075437.1| Homo sapiens cDNA PSEC0128 fis, clone PLACE1004113 Length = 2134 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 315 ctgctgatcctgccagcccttctga 339 |||||| |||||||||||||||||| Sbjct: 113 ctgctgctcctgccagcccttctga 137
>dbj|AK096260.1| Homo sapiens cDNA FLJ38941 fis, clone NT2NE2015974 Length = 3098 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 315 ctgctgatcctgccagcccttctga 339 |||||| |||||||||||||||||| Sbjct: 640 ctgctgctcctgccagcccttctga 664
>dbj|AK056325.1| Homo sapiens cDNA FLJ31763 fis, clone NT2RI2007827 Length = 1965 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 315 ctgctgatcctgccagcccttctga 339 |||||| |||||||||||||||||| Sbjct: 100 ctgctgctcctgccagcccttctga 124
>dbj|AK027305.1| Homo sapiens cDNA FLJ14399 fis, clone HEMBA1003711 Length = 1569 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 315 ctgctgatcctgccagcccttctga 339 |||||| |||||||||||||||||| Sbjct: 103 ctgctgctcctgccagcccttctga 127
>dbj|AB063087.1| Macaca fascicularis brain cDNA clone:QtrA-10419, similar to human transmembrane protein 25 (TMEM25), mRNA NM_032780 Length = 2713 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 315 ctgctgatcctgccagcccttctga 339 |||||| |||||||||||||||||| Sbjct: 475 ctgctgctcctgccagcccttctga 499
>ref|NM_032780.2| Homo sapiens transmembrane protein 25 (TMEM25), mRNA Length = 2491 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 315 ctgctgatcctgccagcccttctga 339 |||||| |||||||||||||||||| Sbjct: 93 ctgctgctcctgccagcccttctga 117
>emb|CR936278.9| Zebrafish DNA sequence from clone CH211-46O5 in linkage group 19, complete sequence Length = 146216 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 325 tgccagcccttctgaacagca 345 ||||||||||||||||||||| Sbjct: 143110 tgccagcccttctgaacagca 143090
>gb|AC114614.9| Mus musculus chromosome 5, clone RP24-81J14, complete sequence Length = 206921 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 535 aaggactcctctaacttcaga 555 ||||||||||||||||||||| Sbjct: 185748 aaggactcctctaacttcaga 185768
>dbj|AP001267.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-770J1, complete sequence Length = 194310 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 315 ctgctgatcctgccagcccttctga 339 |||||| |||||||||||||||||| Sbjct: 157279 ctgctgctcctgccagcccttctga 157303
>dbj|AP000941.6| Homo sapiens genomic DNA, chromosome 11 clone:RP11-861M13, complete sequence Length = 199321 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 315 ctgctgatcctgccagcccttctga 339 |||||| |||||||||||||||||| Sbjct: 7071 ctgctgctcctgccagcccttctga 7095
>dbj|AB050516.1| Macaca fascicularis brain cDNA, clone:QnpA-18618 Length = 1758 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 315 ctgctgatcctgccagcccttctga 339 |||||| |||||||||||||||||| Sbjct: 641 ctgctgctcctgccagcccttctga 665
>ref|XM_470891.1| Oryza sativa (japonica cultivar-group), mRNA Length = 5457 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 473 ttcaaccgcaggcatcattgtcgg 496 ||||||||||||||||| |||||| Sbjct: 154 ttcaaccgcaggcatcactgtcgg 177
>gb|AC091787.6| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0087G11, complete sequence Length = 169728 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 473 ttcaaccgcaggcatcattgtcgg 496 ||||||||||||||||| |||||| Sbjct: 19637 ttcaaccgcaggcatcactgtcgg 19660
>gb|AC084295.10| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0015K03, complete sequence Length = 89172 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 473 ttcaaccgcaggcatcattgtcgg 496 ||||||||||||||||| |||||| Sbjct: 25000 ttcaaccgcaggcatcactgtcgg 24977
>gb|AF106576.2| Caenorhabditis elegans cosmid W07E6, complete sequence Length = 31787 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 caagaagaataaggctgaag 217 |||||||||||||||||||| Sbjct: 809 caagaagaataaggctgaag 790
>gb|AY589630.1| Caenorhabditis briggsae FOG-1 (fog-1) gene, complete cds Length = 2846 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 231 caacaaacaccattctggac 250 |||||||||||||||||||| Sbjct: 2374 caacaaacaccattctggac 2393
>gb|AY589597.1| Caenorhabditis briggsae FOG-1 (fog-1) mRNA, complete cds Length = 2354 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 231 caacaaacaccattctggac 250 |||||||||||||||||||| Sbjct: 1859 caacaaacaccattctggac 1878
>gb|AC146094.2| Pan troglodytes BAC clone RP43-48M18 from 7, complete sequence Length = 192766 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 235 aaacaccattctggacacgg 254 |||||||||||||||||||| Sbjct: 172776 aaacaccattctggacacgg 172795
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 473 ttcaaccgcaggcatcattgtcgg 496 ||||||||||||||||| |||||| Sbjct: 16030782 ttcaaccgcaggcatcactgtcgg 16030759
>gb|AC104844.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBb0030L19, complete sequence Length = 128848 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 tcttgaagcaagaagaataa 209 |||||||||||||||||||| Sbjct: 18070 tcttgaagcaagaagaataa 18051
>emb|CR376773.7| Zebrafish DNA sequence from clone CH211-23E22 in linkage group 17, complete sequence Length = 167088 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 342 agcaaaatgaaaagaggagg 361 |||||||||||||||||||| Sbjct: 60459 agcaaaatgaaaagaggagg 60440
>ref|XM_811013.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053507519.180) partial mRNA Length = 993 Score = 40.1 bits (20), Expect = 8.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 485 catcattgtcggaactgcggcgatattttctg 516 |||||||||||| |||| |||| ||||||||| Sbjct: 157 catcattgtcggtactgtggcggtattttctg 188
>ref|XM_813316.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053508207.40) partial mRNA Length = 936 Score = 40.1 bits (20), Expect = 8.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 485 catcattgtcggaactgcggcgatattttctg 516 |||||||||||| |||| |||| ||||||||| Sbjct: 100 catcattgtcggtactgtggcggtattttctg 131
>ref|XM_815046.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053508325.101) partial mRNA Length = 480 Score = 40.1 bits (20), Expect = 8.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 485 catcattgtcggaactgcggcgatattttctg 516 |||||||||||| |||| |||| ||||||||| Sbjct: 358 catcattgtcggtactgtggcggtattttctg 389
>gb|AC162370.4| Mus musculus chromosome 7, clone RP23-32F4, complete sequence Length = 225308 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 276 tcaaggagatggcaagcagc 295 |||||||||||||||||||| Sbjct: 10533 tcaaggagatggcaagcagc 10552
>emb|BX119957.13| Human DNA sequence from clone DASS-182C6 on chromosome 6, complete sequence Length = 112118 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 tgctctgccaggttggtttg 64 |||||||||||||||||||| Sbjct: 31678 tgctctgccaggttggtttg 31659
>emb|BX248507.3| Human DNA sequence from clone DAQB-298I5 on chromosome 6 Contains the PPP1R10 gene for protein phosphatase 1, regulatory subunit 10, the 5' end of MRPS18B gene for mitochondrial ribosomal protein S18B and 1 CpG island, complete sequence Length = 22142 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 tgctctgccaggttggtttg 64 |||||||||||||||||||| Sbjct: 6416 tgctctgccaggttggtttg 6397
>emb|AL662825.5| Human DNA sequence from clone XXbac-98J21 on chromosome 6 contains the GNL1 gene for guanine nucleotide binding protein-like 1, the gene for CAT56 protein, the ABCF1 gene for ATP-binding cassette, subfamily F, member 1, the PPP1R10 gene for protein phosphatase 1, regulatory subunit 10, the 5' end of the MRPS18B gene for mitochondrial ribosomal protein S18B and three CpG islands, complete sequence Length = 81768 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 tgctctgccaggttggtttg 64 |||||||||||||||||||| Sbjct: 60416 tgctctgccaggttggtttg 60397
>emb|AL662800.4| Human DNA sequence from clone XXbac-249D20 on chromosome 6 contains the GNL1 gene for guanine nucleotide binding protein-like 1, the gene for CAT56 protein, the ABCF1 gene for ATP-binding cassette, subfamily F, member 1, the PPP1R10 gene for protein phosphatase 1, regulatory subunit 10, the MRPS18B gene for mitochondrial ribosomal protein S18B, two novel proteins, a prothymosin alpha (PTMA) pseudogene and four CpG islands, complete sequence Length = 151228 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 tgctctgccaggttggtttg 64 |||||||||||||||||||| Sbjct: 103240 tgctctgccaggttggtttg 103221
>emb|AL445071.15| Human DNA sequence from clone RP11-460H18 on chromosome 10 Contains a peptidylprolyl isomerase A (cyclophilin A) (PPIA)(CYPA, CYPH) pseudogene, a ribosomal protein S24 (RPS24) pseudogene, the 5' end of a novel gene and a CpG island, complete sequence Length = 151478 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 585 acagatgcatggctgaagtt 604 |||||||||||||||||||| Sbjct: 61411 acagatgcatggctgaagtt 61430
>emb|AL031709.12|HS316G12 Human DNA sequence from clone LA16c-316G12 on chromosome 16 Contains the gene for C2 domain protein KIAA0734, the gene for a novel protein similar to predicted yeast, worm and archae-bacterial proteins, a novel gene and the 3' part of the gene for a novel protein similar to API1 and API2 (apoptosis inhibitor 1 and 2 (MIHB, MIHC, IAP1, IAP2)). Contains ESTs, a GSS and six putative CpG islands, complete sequence Length = 37476 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 246 tggacacggtgacagctgcc 265 |||||||||||||||||||| Sbjct: 13436 tggacacggtgacagctgcc 13455
>ref|XM_965204.1| PREDICTED: Tribolium castaneum similar to CG31064-PB, isoform B (LOC658851), mRNA Length = 1998 Score = 40.1 bits (20), Expect = 8.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 482 aggcatcattgtcggaactgcggcgatatttt 513 ||||| |||||| ||||||| ||||||||||| Sbjct: 1858 aggcaccattgtaggaactgtggcgatatttt 1889
>emb|CR753328.11| Human DNA sequence from clone DADB-129D20 on chromosome 6, complete sequence Length = 105135 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 tgctctgccaggttggtttg 64 |||||||||||||||||||| Sbjct: 27280 tgctctgccaggttggtttg 27261
>emb|CR759778.8| Human DNA sequence from clone DAMC-83F13 on chromosome 6, complete sequence Length = 88815 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 tgctctgccaggttggtttg 64 |||||||||||||||||||| Sbjct: 27792 tgctctgccaggttggtttg 27773
>gb|AE006467.1| Homo sapiens 16p13.3 sequence section 6 of 8 Length = 279011 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 246 tggacacggtgacagctgcc 265 |||||||||||||||||||| Sbjct: 15268 tggacacggtgacagctgcc 15287
>dbj|AB210176.1| Pan troglodytes MRPS18B, PPP1R10 genes for mitochondrial ribosomal protein S18B, phosphatase nuclear targeting subunit, complete cds, cell_line: Ericka Length = 26950 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 tgctctgccaggttggtttg 64 |||||||||||||||||||| Sbjct: 23642 tgctctgccaggttggtttg 23661
>dbj|AB210175.1| Pan troglodytes MRPS18B, PPP1R10 genes for mitochondrial ribosomal protein S18B, phosphatase nuclear targeting subunit, complete cds, cell_line: Borie Length = 26950 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 tgctctgccaggttggtttg 64 |||||||||||||||||||| Sbjct: 23642 tgctctgccaggttggtttg 23661
>dbj|AB202094.1| Homo sapiens PPP1R10, MRPS18B genes for protein phosphatase 1, regulatory subunit 10, mitochondrial ribosomal protein S18B, complete cds Length = 26898 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 tgctctgccaggttggtttg 64 |||||||||||||||||||| Sbjct: 3306 tgctctgccaggttggtttg 3287
>gb|AC182811.1| Gasterosteus aculeatus clone VMRC28-119K14, complete sequence Length = 130423 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 157 tgtatttgccttttggtcga 176 |||||||||||||||||||| Sbjct: 108423 tgtatttgccttttggtcga 108442
>ref|NM_061341.2| Caenorhabditis elegans W07E6.1 (W07E6.1) mRNA, complete cds Length = 2180 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 198 caagaagaataaggctgaag 217 |||||||||||||||||||| Sbjct: 1604 caagaagaataaggctgaag 1623
>gb|AC148659.1| Macaca mulatta Major Histocompatibility Complex BAC MMU005H07, complete sequence Length = 174766 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 tgctctgccaggttggtttg 64 |||||||||||||||||||| Sbjct: 55904 tgctctgccaggttggtttg 55885
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 tcttgaagcaagaagaataa 209 |||||||||||||||||||| Sbjct: 23148885 tcttgaagcaagaagaataa 23148866
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 473 ttcaaccgcaggcatcattgtcgg 496 ||||||||||||||||| |||||| Sbjct: 16025314 ttcaaccgcaggcatcactgtcgg 16025291
>emb|BX908728.7| Human DNA sequence from clone DAMA-178G23 on chromosome 6, complete sequence Length = 104755 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 tgctctgccaggttggtttg 64 |||||||||||||||||||| Sbjct: 10465 tgctctgccaggttggtttg 10446
>dbj|AB128049.1| Macaca mulatta genes, MHC class I region, partial and complete cds Length = 3284914 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 tgctctgccaggttggtttg 64 |||||||||||||||||||| Sbjct: 1829617 tgctctgccaggttggtttg 1829636
>gb|AC074047.6|AC074047 Mus musculus 7 BAC RP23-377F9 (Roswell Park Cancer Institute Mouse BAC Library) complete sequence Length = 150351 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 276 tcaaggagatggcaagcagc 295 |||||||||||||||||||| Sbjct: 102718 tcaaggagatggcaagcagc 102737
>dbj|D78344.1| Mus musculus DNA, gamma gene loci of immunoglobulin heavy chains Length = 59641 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 445 cacggcctgtgcaggagatttcag 468 ||||| |||||||||||||||||| Sbjct: 10979 cacgggctgtgcaggagatttcag 11002
>gb|AC022472.2|T20H2 Sequence of BAC T20H2 from Arabidopsis thaliana chromosome 1, complete sequence Length = 92710 Score = 40.1 bits (20), Expect = 8.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 389 aagcctgtgactgaggagaaagaccattgggt 420 |||||||| | |||||||||||| |||||||| Sbjct: 38791 aagcctgttaatgaggagaaagatcattgggt 38760
>dbj|BA000025.2| Homo sapiens genomic DNA, chromosome 6p21.3, HLA Class I region Length = 2229817 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 tgctctgccaggttggtttg 64 |||||||||||||||||||| Sbjct: 1339130 tgctctgccaggttggtttg 1339149
>dbj|BA000041.2| Pan troglodytes DNA, major histocompatibility complex class I region Length = 1750601 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 tgctctgccaggttggtttg 64 |||||||||||||||||||| Sbjct: 915197 tgctctgccaggttggtttg 915216
>emb|BX248504.5| Zebrafish DNA sequence from clone CH211-72K22 in linkage group 9, complete sequence Length = 178247 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 agaagtaaagcagctgctga 321 |||||||||||||||||||| Sbjct: 74649 agaagtaaagcagctgctga 74668
>emb|BX004996.8| Zebrafish DNA sequence from clone CH211-268F23 in linkage group 6, complete sequence Length = 167320 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 342 agcaaaatgaaaagaggagg 361 |||||||||||||||||||| Sbjct: 39381 agcaaaatgaaaagaggagg 39362
>dbj|AP002988.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-449K13, complete sequence Length = 105000 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 211 gctgaagtcaagcagctata 230 |||||||||||||||||||| Sbjct: 56666 gctgaagtcaagcagctata 56647
>gb|AC006138.1|AC006138 Homo sapiens clone UWGC:y54c194 from 6p21, complete sequence Length = 37448 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 tgctctgccaggttggtttg 64 |||||||||||||||||||| Sbjct: 7203 tgctctgccaggttggtttg 7222
>dbj|AB088097.1| Homo sapiens FB19 gene for protein phosphatase 1, regulatory subunit 10, complete cds Length = 18609 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 tgctctgccaggttggtttg 64 |||||||||||||||||||| Sbjct: 15304 tgctctgccaggttggtttg 15323
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 tcttgaagcaagaagaataa 209 |||||||||||||||||||| Sbjct: 23458795 tcttgaagcaagaagaataa 23458776
>emb|AJ851868.2| Mus musculus immunoglobulin heavy chain locus constant region and partial variable region, strain 129/Sv Length = 1382053 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 445 cacggcctgtgcaggagatttcag 468 ||||| |||||||||||||||||| Sbjct: 1309405 cacgggctgtgcaggagatttcag 1309428
>emb|AJ487681.1|MMU487681 Mus musculus IgG1 gene for immunoglobulin gamma1 heavy chain, strain C57BL/6 Length = 9207 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 445 cacggcctgtgcaggagatttcag 468 ||||| |||||||||||||||||| Sbjct: 4540 cacgggctgtgcaggagatttcag 4563
>gb|AC124074.2| Homo sapiens chromosome 8, clone RP11-781O9, complete sequence Length = 180673 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 392 cctgtgactgaggagaaaga 411 |||||||||||||||||||| Sbjct: 111045 cctgtgactgaggagaaaga 111064
>dbj|AB023049.1| Homo sapiens genomic DNA, chromosome 6p21.3, HLA class I region, clone:321E19, complete sequence Length = 123554 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 tgctctgccaggttggtttg 64 |||||||||||||||||||| Sbjct: 111908 tgctctgccaggttggtttg 111927 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,926,012 Number of Sequences: 3902068 Number of extensions: 5926012 Number of successful extensions: 123439 Number of sequences better than 10.0: 92 Number of HSP's better than 10.0 without gapping: 92 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 123089 Number of HSP's gapped (non-prelim): 346 length of query: 637 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 614 effective length of database: 17,143,297,704 effective search space: 10525984790256 effective search space used: 10525984790256 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)