| Clone Name | bags39a19 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK074015.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033074F23, full insert sequence Length = 3305 Score = 343 bits (173), Expect = 4e-91 Identities = 290/329 (88%) Strand = Plus / Plus Query: 117 gtgagaatggtcctctttggaaagactactttgagggtggtgcaacttgggccttcaacg 176 |||||||||| || ||| |||||| |||||||| |||||||| |||||||| || | | Sbjct: 2542 gtgagaatggcccgcttctgaaagattactttgaaggtggtgctacttgggcttttgatg 2601 Query: 177 tcggcagtcaatctatgacatgcccaatcatagttgaggatctcgaccggcctcatcaga 236 | ||||||||||||||||||||||||||||| ||||| ||||| || ||||||| ||||| Sbjct: 2602 ttggcagtcaatctatgacatgcccaatcattgttgaagatcttgatcggcctcgtcaga 2661 Query: 237 tgcttgtggagatgatttgtgatgacagaggtatcttcctggaaatagccgactttatca 296 |||||||||||||| | ||||| || ||||| |||||| |||| ||||| ||||| |||| Sbjct: 2662 tgcttgtggagatgctctgtgaggatagagggatcttcttggagatagctgacttcatca 2721 Query: 297 aaggacttggactaaccatcttgaggggtgtgatggaagcacgcaaaaataaaatctggg 356 ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2722 aaggacttggattaactatcttgaggggtgtgatggaagcacgcaaaaataaaatctggg 2781 Query: 357 cacgattcactgttgaggccaacagggacgtgactagaatggagattttcctctcgctcg 416 | || ||||| ||||||||||||||||| |||||||||||||| || ||||||||||| Sbjct: 2782 ctcgcttcaccgttgaggccaacagggatgtgactagaatggaaatcttcctctcgctta 2841 Query: 417 tgcgcttgttggaacccaattgtgatggc 445 |||||||||||||||| | ||||||||| Sbjct: 2842 tgcgcttgttggaaccgagctgtgatggc 2870 Score = 69.9 bits (35), Expect = 1e-08 Identities = 59/67 (88%) Strand = Plus / Plus Query: 470 aatgtaaaaatacctcttgggattgcgcaacatcagattatcccagcgacaggccacctt 529 |||||||||||||||| |||||||| |||||||| | |||| ||||| |||||||| ||| Sbjct: 2901 aatgtaaaaatacctcctgggattgtgcaacatccggttataccagcaacaggccatctt 2960 Query: 530 agatgag 536 || |||| Sbjct: 2961 aggtgag 2967
>dbj|AK106579.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-111-C10, full insert sequence Length = 1748 Score = 252 bits (127), Expect = 1e-63 Identities = 292/347 (84%) Strand = Plus / Plus Query: 105 agatacttagcagtgagaatggtcctctttggaaagactactttgagggtggtgcaactt 164 |||| ||| ||| ||||||||||||| ||||||||||||| ||||| ||||||||||||| Sbjct: 850 agattcttggcaatgagaatggtcctgtttggaaagactattttgaaggtggtgcaactt 909 Query: 165 gggccttcaacgtcggcagtcaatctatgacatgcccaatcatagttgaggatctcgacc 224 |||| || | || ||| ||| ||||||||||| |||||||| ||||||||||| |||| Sbjct: 910 gggcatttgatgttggctctcagtctatgacatgtccaatcattgttgaggatcttgacc 969 Query: 225 ggcctcatcagatgcttgtggagatgatttgtgatgacagaggtatcttcctggaaatag 284 | |||| || |||||||| |||||||||||||| || ||||| || ||| |||| |||| Sbjct: 970 gacctcgccaaatgcttgttgagatgatttgtgaggatagaggcatattcttggagatag 1029 Query: 285 ccgactttatcaaaggacttggactaaccatcttgaggggtgtgatggaagcacgcaaaa 344 | ||||| ||||| ||||||||| | |||||| | || |||| |||||||| || |||| Sbjct: 1030 ctgacttcatcaagggacttggattgaccatcctaagaggtgcaatggaagcccgtaaaa 1089 Query: 345 ataaaatctgggcacgattcactgttgaggccaacagggacgtgactagaatggagattt 404 |||||| |||||||| || ||||||||||| |||||||||||||| |||||||||| | Sbjct: 1090 gtaaaatttgggcacggtttactgttgaggcaaacagggacgtgacccgaatggagatct 1149 Query: 405 tcctctcgctcgtgcgcttgttggaacccaattgtgatggcagtgga 451 | |||||||| |||||||| ||||||||||||| || |||||||| Sbjct: 1150 ttctctcgcttgtgcgcttactggaacccaattgcgacagcagtgga 1196
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 145 bits (73), Expect = 2e-31 Identities = 109/121 (90%) Strand = Plus / Plus Query: 254 tgtgatgacagaggtatcttcctggaaatagccgactttatcaaaggacttggactaacc 313 ||||| || ||||| |||||| |||| ||||| ||||| ||||||||||||||| |||| Sbjct: 3027710 tgtgaggatagagggatcttcttggagatagctgacttcatcaaaggacttggattaact 3027769 Query: 314 atcttgaggggtgtgatggaagcacgcaaaaataaaatctgggcacgattcactgttgag 373 |||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||| Sbjct: 3027770 atcttgaggggtgtgatggaagcacgcaaaaataaaatctgggctcgcttcaccgttgag 3027829 Query: 374 g 374 | Sbjct: 3027830 g 3027830 Score = 125 bits (63), Expect = 2e-25 Identities = 114/131 (87%) Strand = Plus / Plus Query: 117 gtgagaatggtcctctttggaaagactactttgagggtggtgcaacttgggccttcaacg 176 |||||||||| || ||| |||||| |||||||| |||||||| |||||||| || | | Sbjct: 3027474 gtgagaatggcccgcttctgaaagattactttgaaggtggtgctacttgggcttttgatg 3027533 Query: 177 tcggcagtcaatctatgacatgcccaatcatagttgaggatctcgaccggcctcatcaga 236 | ||||||||||||||||||||||||||||| ||||| ||||| || ||||||| ||||| Sbjct: 3027534 ttggcagtcaatctatgacatgcccaatcattgttgaagatcttgatcggcctcgtcaga 3027593 Query: 237 tgcttgtggag 247 ||||||||||| Sbjct: 3027594 tgcttgtggag 3027604 Score = 83.8 bits (42), Expect = 6e-13 Identities = 66/74 (89%) Strand = Plus / Plus Query: 372 aggccaacagggacgtgactagaatggagattttcctctcgctcgtgcgcttgttggaac 431 ||||||||||||| |||||||||||||| || ||||||||||| ||||||||||||||| Sbjct: 3027931 aggccaacagggatgtgactagaatggaaatcttcctctcgcttatgcgcttgttggaac 3027990 Query: 432 ccaattgtgatggc 445 | | ||||||||| Sbjct: 3027991 cgagctgtgatggc 3028004 Score = 69.9 bits (35), Expect = 1e-08 Identities = 59/67 (88%) Strand = Plus / Plus Query: 470 aatgtaaaaatacctcttgggattgcgcaacatcagattatcccagcgacaggccacctt 529 |||||||||||||||| |||||||| |||||||| | |||| ||||| |||||||| ||| Sbjct: 3028035 aatgtaaaaatacctcctgggattgtgcaacatccggttataccagcaacaggccatctt 3028094 Query: 530 agatgag 536 || |||| Sbjct: 3028095 aggtgag 3028101
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 145 bits (73), Expect = 2e-31 Identities = 109/121 (90%) Strand = Plus / Plus Query: 254 tgtgatgacagaggtatcttcctggaaatagccgactttatcaaaggacttggactaacc 313 ||||| || ||||| |||||| |||| ||||| ||||| ||||||||||||||| |||| Sbjct: 3027655 tgtgaggatagagggatcttcttggagatagctgacttcatcaaaggacttggattaact 3027714 Query: 314 atcttgaggggtgtgatggaagcacgcaaaaataaaatctgggcacgattcactgttgag 373 |||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||| Sbjct: 3027715 atcttgaggggtgtgatggaagcacgcaaaaataaaatctgggctcgcttcaccgttgag 3027774 Query: 374 g 374 | Sbjct: 3027775 g 3027775 Score = 125 bits (63), Expect = 2e-25 Identities = 114/131 (87%) Strand = Plus / Plus Query: 117 gtgagaatggtcctctttggaaagactactttgagggtggtgcaacttgggccttcaacg 176 |||||||||| || ||| |||||| |||||||| |||||||| |||||||| || | | Sbjct: 3027419 gtgagaatggcccgcttctgaaagattactttgaaggtggtgctacttgggcttttgatg 3027478 Query: 177 tcggcagtcaatctatgacatgcccaatcatagttgaggatctcgaccggcctcatcaga 236 | ||||||||||||||||||||||||||||| ||||| ||||| || ||||||| ||||| Sbjct: 3027479 ttggcagtcaatctatgacatgcccaatcattgttgaagatcttgatcggcctcgtcaga 3027538 Query: 237 tgcttgtggag 247 ||||||||||| Sbjct: 3027539 tgcttgtggag 3027549 Score = 83.8 bits (42), Expect = 6e-13 Identities = 66/74 (89%) Strand = Plus / Plus Query: 372 aggccaacagggacgtgactagaatggagattttcctctcgctcgtgcgcttgttggaac 431 ||||||||||||| |||||||||||||| || ||||||||||| ||||||||||||||| Sbjct: 3027876 aggccaacagggatgtgactagaatggaaatcttcctctcgcttatgcgcttgttggaac 3027935 Query: 432 ccaattgtgatggc 445 | | ||||||||| Sbjct: 3027936 cgagctgtgatggc 3027949 Score = 69.9 bits (35), Expect = 1e-08 Identities = 59/67 (88%) Strand = Plus / Plus Query: 470 aatgtaaaaatacctcttgggattgcgcaacatcagattatcccagcgacaggccacctt 529 |||||||||||||||| |||||||| |||||||| | |||| ||||| |||||||| ||| Sbjct: 3027980 aatgtaaaaatacctcctgggattgtgcaacatccggttataccagcaacaggccatctt 3028039 Query: 530 agatgag 536 || |||| Sbjct: 3028040 aggtgag 3028046
>emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa0095K18 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 159711 Score = 145 bits (73), Expect = 2e-31 Identities = 109/121 (90%) Strand = Plus / Minus Query: 254 tgtgatgacagaggtatcttcctggaaatagccgactttatcaaaggacttggactaacc 313 ||||| || ||||| |||||| |||| ||||| ||||| ||||||||||||||| |||| Sbjct: 127133 tgtgaggatagagggatcttcttggagatagctgacttcatcaaaggacttggattaact 127074 Query: 314 atcttgaggggtgtgatggaagcacgcaaaaataaaatctgggcacgattcactgttgag 373 |||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||| Sbjct: 127073 atcttgaggggtgtgatggaagcacgcaaaaataaaatctgggctcgcttcaccgttgag 127014 Query: 374 g 374 | Sbjct: 127013 g 127013 Score = 125 bits (63), Expect = 2e-25 Identities = 114/131 (87%) Strand = Plus / Minus Query: 117 gtgagaatggtcctctttggaaagactactttgagggtggtgcaacttgggccttcaacg 176 |||||||||| || ||| |||||| |||||||| |||||||| |||||||| || | | Sbjct: 127369 gtgagaatggcccgcttctgaaagattactttgaaggtggtgctacttgggcttttgatg 127310 Query: 177 tcggcagtcaatctatgacatgcccaatcatagttgaggatctcgaccggcctcatcaga 236 | ||||||||||||||||||||||||||||| ||||| ||||| || ||||||| ||||| Sbjct: 127309 ttggcagtcaatctatgacatgcccaatcattgttgaagatcttgatcggcctcgtcaga 127250 Query: 237 tgcttgtggag 247 ||||||||||| Sbjct: 127249 tgcttgtggag 127239 Score = 83.8 bits (42), Expect = 6e-13 Identities = 66/74 (89%) Strand = Plus / Minus Query: 372 aggccaacagggacgtgactagaatggagattttcctctcgctcgtgcgcttgttggaac 431 ||||||||||||| |||||||||||||| || ||||||||||| ||||||||||||||| Sbjct: 126912 aggccaacagggatgtgactagaatggaaatcttcctctcgcttatgcgcttgttggaac 126853 Query: 432 ccaattgtgatggc 445 | | ||||||||| Sbjct: 126852 cgagctgtgatggc 126839 Score = 69.9 bits (35), Expect = 1e-08 Identities = 59/67 (88%) Strand = Plus / Minus Query: 470 aatgtaaaaatacctcttgggattgcgcaacatcagattatcccagcgacaggccacctt 529 |||||||||||||||| |||||||| |||||||| | |||| ||||| |||||||| ||| Sbjct: 126808 aatgtaaaaatacctcctgggattgtgcaacatccggttataccagcaacaggccatctt 126749 Query: 530 agatgag 536 || |||| Sbjct: 126748 aggtgag 126742
>gb|AC133217.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0052H02, complete sequence Length = 159632 Score = 111 bits (56), Expect = 3e-21 Identities = 119/140 (85%) Strand = Plus / Plus Query: 104 cagatacttagcagtgagaatggtcctctttggaaagactactttgagggtggtgcaact 163 ||||| ||| ||| ||||||||||||| ||||||||||||| ||||| |||||||||||| Sbjct: 99173 cagattcttggcaatgagaatggtcctgtttggaaagactattttgaaggtggtgcaact 99232 Query: 164 tgggccttcaacgtcggcagtcaatctatgacatgcccaatcatagttgaggatctcgac 223 ||||| || | || ||| ||| ||||||||||| |||||||| ||||||||||| ||| Sbjct: 99233 tgggcatttgatgttggctctcagtctatgacatgtccaatcattgttgaggatcttgac 99292 Query: 224 cggcctcatcagatgcttgt 243 || |||| || |||||||| Sbjct: 99293 cgacctcgccaaatgcttgt 99312 Score = 81.8 bits (41), Expect = 3e-12 Identities = 107/129 (82%) Strand = Plus / Plus Query: 246 agatgatttgtgatgacagaggtatcttcctggaaatagccgactttatcaaaggacttg 305 ||||||||||||| || ||||| || ||| |||| ||||| ||||| ||||| ||||||| Sbjct: 99430 agatgatttgtgaggatagaggcatattcttggagatagctgacttcatcaagggacttg 99489 Query: 306 gactaaccatcttgaggggtgtgatggaagcacgcaaaaataaaatctgggcacgattca 365 || | |||||| | || |||| |||||||| || |||| |||||| |||||||| || | Sbjct: 99490 gattgaccatcctaagaggtgcaatggaagcccgtaaaagtaaaatttgggcacggttta 99549 Query: 366 ctgttgagg 374 ||||||||| Sbjct: 99550 ctgttgagg 99558 Score = 71.9 bits (36), Expect = 2e-09 Identities = 69/80 (86%) Strand = Plus / Plus Query: 372 aggccaacagggacgtgactagaatggagattttcctctcgctcgtgcgcttgttggaac 431 |||| |||||||||||||| |||||||||| || |||||||| |||||||| |||||| Sbjct: 99740 aggcaaacagggacgtgacccgaatggagatctttctctcgcttgtgcgcttactggaac 99799 Query: 432 ccaattgtgatggcagtgga 451 ||||||| || |||||||| Sbjct: 99800 ccaattgcgacagcagtgga 99819
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 111 bits (56), Expect = 3e-21 Identities = 119/140 (85%) Strand = Plus / Plus Query: 104 cagatacttagcagtgagaatggtcctctttggaaagactactttgagggtggtgcaact 163 ||||| ||| ||| ||||||||||||| ||||||||||||| ||||| |||||||||||| Sbjct: 2819366 cagattcttggcaatgagaatggtcctgtttggaaagactattttgaaggtggtgcaact 2819425 Query: 164 tgggccttcaacgtcggcagtcaatctatgacatgcccaatcatagttgaggatctcgac 223 ||||| || | || ||| ||| ||||||||||| |||||||| ||||||||||| ||| Sbjct: 2819426 tgggcatttgatgttggctctcagtctatgacatgtccaatcattgttgaggatcttgac 2819485 Query: 224 cggcctcatcagatgcttgt 243 || |||| || |||||||| Sbjct: 2819486 cgacctcgccaaatgcttgt 2819505 Score = 81.8 bits (41), Expect = 3e-12 Identities = 107/129 (82%) Strand = Plus / Plus Query: 246 agatgatttgtgatgacagaggtatcttcctggaaatagccgactttatcaaaggacttg 305 ||||||||||||| || ||||| || ||| |||| ||||| ||||| ||||| ||||||| Sbjct: 2819623 agatgatttgtgaggatagaggcatattcttggagatagctgacttcatcaagggacttg 2819682 Query: 306 gactaaccatcttgaggggtgtgatggaagcacgcaaaaataaaatctgggcacgattca 365 || | |||||| | || |||| |||||||| || |||| |||||| |||||||| || | Sbjct: 2819683 gattgaccatcctaagaggtgcaatggaagcccgtaaaagtaaaatttgggcacggttta 2819742 Query: 366 ctgttgagg 374 ||||||||| Sbjct: 2819743 ctgttgagg 2819751 Score = 71.9 bits (36), Expect = 2e-09 Identities = 69/80 (86%) Strand = Plus / Plus Query: 372 aggccaacagggacgtgactagaatggagattttcctctcgctcgtgcgcttgttggaac 431 |||| |||||||||||||| |||||||||| || |||||||| |||||||| |||||| Sbjct: 2819933 aggcaaacagggacgtgacccgaatggagatctttctctcgcttgtgcgcttactggaac 2819992 Query: 432 ccaattgtgatggcagtgga 451 ||||||| || |||||||| Sbjct: 2819993 ccaattgcgacagcagtgga 2820012
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 111 bits (56), Expect = 3e-21 Identities = 119/140 (85%) Strand = Plus / Plus Query: 104 cagatacttagcagtgagaatggtcctctttggaaagactactttgagggtggtgcaact 163 ||||| ||| ||| ||||||||||||| ||||||||||||| ||||| |||||||||||| Sbjct: 2828397 cagattcttggcaatgagaatggtcctgtttggaaagactattttgaaggtggtgcaact 2828456 Query: 164 tgggccttcaacgtcggcagtcaatctatgacatgcccaatcatagttgaggatctcgac 223 ||||| || | || ||| ||| ||||||||||| |||||||| ||||||||||| ||| Sbjct: 2828457 tgggcatttgatgttggctctcagtctatgacatgtccaatcattgttgaggatcttgac 2828516 Query: 224 cggcctcatcagatgcttgt 243 || |||| || |||||||| Sbjct: 2828517 cgacctcgccaaatgcttgt 2828536 Score = 81.8 bits (41), Expect = 3e-12 Identities = 107/129 (82%) Strand = Plus / Plus Query: 246 agatgatttgtgatgacagaggtatcttcctggaaatagccgactttatcaaaggacttg 305 ||||||||||||| || ||||| || ||| |||| ||||| ||||| ||||| ||||||| Sbjct: 2828654 agatgatttgtgaggatagaggcatattcttggagatagctgacttcatcaagggacttg 2828713 Query: 306 gactaaccatcttgaggggtgtgatggaagcacgcaaaaataaaatctgggcacgattca 365 || | |||||| | || |||| |||||||| || |||| |||||| |||||||| || | Sbjct: 2828714 gattgaccatcctaagaggtgcaatggaagcccgtaaaagtaaaatttgggcacggttta 2828773 Query: 366 ctgttgagg 374 ||||||||| Sbjct: 2828774 ctgttgagg 2828782 Score = 71.9 bits (36), Expect = 2e-09 Identities = 69/80 (86%) Strand = Plus / Plus Query: 372 aggccaacagggacgtgactagaatggagattttcctctcgctcgtgcgcttgttggaac 431 |||| |||||||||||||| |||||||||| || |||||||| |||||||| |||||| Sbjct: 2828964 aggcaaacagggacgtgacccgaatggagatctttctctcgcttgtgcgcttactggaac 2829023 Query: 432 ccaattgtgatggcagtgga 451 ||||||| || |||||||| Sbjct: 2829024 ccaattgcgacagcagtgga 2829043
>dbj|AK099677.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013070F08, full insert sequence Length = 3405 Score = 83.8 bits (42), Expect = 6e-13 Identities = 117/142 (82%) Strand = Plus / Plus Query: 144 actttgagggtggtgcaacttgggccttcaacgtcggcagtcaatctatgacatgcccaa 203 ||||||| ||||||||||| |||||||| | || || | | |||||||||||| |||| Sbjct: 2541 actttgaaggtggtgcaacctgggcctttgaagttggtacgcgatctatgacatgtccaa 2600 Query: 204 tcatagttgaggatctcgaccggcctcatcagatgcttgtggagatgatttgtgatgaca 263 ||||||| ||||||||| | | || | ||| ||||||||||||||| ||||| | || | Sbjct: 2601 tcatagtagaggatctcaatccaccccgtcaaatgcttgtggagatgctttgtaaagaga 2660 Query: 264 gaggtatcttcctggaaatagc 285 |||| |||||| |||||||||| Sbjct: 2661 gaggaatcttcttggaaatagc 2682
>dbj|AK068033.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013129B18, full insert sequence Length = 2979 Score = 83.8 bits (42), Expect = 6e-13 Identities = 117/142 (82%) Strand = Plus / Plus Query: 144 actttgagggtggtgcaacttgggccttcaacgtcggcagtcaatctatgacatgcccaa 203 ||||||| ||||||||||| |||||||| | || || | | |||||||||||| |||| Sbjct: 2491 actttgaaggtggtgcaacctgggcctttgaagttggtacgcgatctatgacatgtccaa 2550 Query: 204 tcatagttgaggatctcgaccggcctcatcagatgcttgtggagatgatttgtgatgaca 263 ||||||| ||||||||| | | || | ||| ||||||||||||||| ||||| | || | Sbjct: 2551 tcatagtagaggatctcaatccaccccgtcaaatgcttgtggagatgctttgtaaagaga 2610 Query: 264 gaggtatcttcctggaaatagc 285 |||| |||||| |||||||||| Sbjct: 2611 gaggaatcttcttggaaatagc 2632
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 58.0 bits (29), Expect = 4e-05 Identities = 65/77 (84%) Strand = Plus / Plus Query: 144 actttgagggtggtgcaacttgggccttcaacgtcggcagtcaatctatgacatgcccaa 203 ||||||| ||||||||||| |||||||| | || || | | |||||||||||| |||| Sbjct: 37455883 actttgaaggtggtgcaacctgggcctttgaagttggtacgcgatctatgacatgtccaa 37455942 Query: 204 tcatagttgaggatctc 220 ||||||| ||||||||| Sbjct: 37455943 tcatagtagaggatctc 37455959
>dbj|AP003270.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0505D12 Length = 146951 Score = 58.0 bits (29), Expect = 4e-05 Identities = 65/77 (84%) Strand = Plus / Plus Query: 144 actttgagggtggtgcaacttgggccttcaacgtcggcagtcaatctatgacatgcccaa 203 ||||||| ||||||||||| |||||||| | || || | | |||||||||||| |||| Sbjct: 50420 actttgaaggtggtgcaacctgggcctttgaagttggtacgcgatctatgacatgtccaa 50479 Query: 204 tcatagttgaggatctc 220 ||||||| ||||||||| Sbjct: 50480 tcatagtagaggatctc 50496
>emb|AL513491.2| Human DNA sequence from clone RP11-79A21 on chromosome X, complete sequence Length = 13509 Score = 50.1 bits (25), Expect = 0.009 Identities = 25/25 (100%) Strand = Plus / Minus Query: 46 gagaaaatagttgcaaaccttgtat 70 ||||||||||||||||||||||||| Sbjct: 6086 gagaaaatagttgcaaaccttgtat 6062
>dbj|AK073183.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033009O22, full insert sequence Length = 2735 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Plus Query: 232 tcagatgcttgtggagatgatttgtga 258 ||||||||||||||||||| ||||||| Sbjct: 2178 tcagatgcttgtggagatgctttgtga 2204
>emb|AL591622.6| Human DNA sequence from clone RP11-141L16 on chromosome 9, complete sequence Length = 89944 Score = 44.1 bits (22), Expect = 0.55 Identities = 25/26 (96%) Strand = Plus / Minus Query: 46 gagaaaatagttgcaaaccttgtata 71 ||||||||| |||||||||||||||| Sbjct: 85178 gagaaaatatttgcaaaccttgtata 85153
>emb|AL158055.12| Human DNA sequence from clone RP11-348F1 on chromosome Xp11.1-11.22 Contains the NUDT11 gene for nudix (nucleoside diphosphate linked moiety X)-type motif 11, two novel genes, the NUDT10 gene for nudix (nucleoside diphosphate linked moiety X)-type motif 10 and three CpG islands, complete sequence Length = 184873 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Minus Query: 470 aatgtaaaaatacctcttggga 491 |||||||||||||||||||||| Sbjct: 103690 aatgtaaaaatacctcttggga 103669
>gb|AC078856.13| Homo sapiens 3 BAC RP11-73F12 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 115534 Score = 44.1 bits (22), Expect = 0.55 Identities = 25/26 (96%) Strand = Plus / Plus Query: 65 ttgtataatcttttcctgtgctattt 90 |||||||||||||||||||| ||||| Sbjct: 97591 ttgtataatcttttcctgtgatattt 97616
>gb|AC116657.3| Mus musculus BAC clone RP23-289E18 from 15, complete sequence Length = 184557 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 120 agaatggtcctctttggaaag 140 ||||||||||||||||||||| Sbjct: 124065 agaatggtcctctttggaaag 124045
>gb|AC151522.2| Medicago truncatula chromosome 2 BAC clone mte1-61m1, complete sequence Length = 106105 Score = 42.1 bits (21), Expect = 2.2 Identities = 84/105 (80%) Strand = Plus / Minus Query: 270 tcttcctggaaatagccgactttatcaaaggacttggactaaccatcttgaggggtgtga 329 |||| ||||||||||| ||||| || | |||| | || |||||||||||| ||| || | Sbjct: 104256 tctttctggaaatagctgacttaataagaggattaggcttaaccatcttgaagggggtaa 104197 Query: 330 tggaagcacgcaaaaataaaatctgggcacgattcactgttgagg 374 ||||||| | ||| | ||||| |||||||| |||| ||| |||| Sbjct: 104196 tggaagctcacaatgacaaaatatgggcacgtttcattgtggagg 104152
>gb|AC148290.3| Medicago truncatula chromosome 2 BAC clone mth2-45h12, complete sequence Length = 132181 Score = 42.1 bits (21), Expect = 2.2 Identities = 84/105 (80%) Strand = Plus / Plus Query: 270 tcttcctggaaatagccgactttatcaaaggacttggactaaccatcttgaggggtgtga 329 |||| ||||||||||| ||||| || | |||| | || |||||||||||| ||| || | Sbjct: 114095 tctttctggaaatagctgacttaataagaggattaggcttaaccatcttgaagggggtaa 114154 Query: 330 tggaagcacgcaaaaataaaatctgggcacgattcactgttgagg 374 ||||||| | ||| | ||||| |||||||| |||| ||| |||| Sbjct: 114155 tggaagctcacaatgacaaaatatgggcacgtttcattgtggagg 114199
>gb|AC078940.4| Homo sapiens BAC clone RP11-144B8 from 2, complete sequence Length = 166315 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 46 gagaaaatagttgcaaacctt 66 ||||||||||||||||||||| Sbjct: 73190 gagaaaatagttgcaaacctt 73210
>gb|AC007239.3| Homo sapiens BAC clone RP11-83A12 from 2, complete sequence Length = 139391 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 46 gagaaaatagttgcaaaccttgtat 70 ||||||||| ||||||||||||||| Sbjct: 11286 gagaaaatatttgcaaaccttgtat 11262
>emb|BX004983.8| Zebrafish DNA sequence from clone DKEY-7F3, complete sequence Length = 234489 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 457 agagaatcaagaaaatgtaaaaata 481 ||||||||| ||||||||||||||| Sbjct: 192414 agagaatcatgaaaatgtaaaaata 192390
>emb|CT009651.1| Medicago truncatula chromosome 5 clone mte1-70c15, COMPLETE SEQUENCE Length = 110880 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 18 cgttatttttagctgcagttt 38 ||||||||||||||||||||| Sbjct: 58536 cgttatttttagctgcagttt 58516
>ref|NM_130084.2| Arabidopsis thaliana unknown protein AT2G45210 mRNA, complete cds Length = 1139 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 456 gagagaatcaagaaaatgtaaaaa 479 |||| ||||||||||||||||||| Sbjct: 136 gagaaaatcaagaaaatgtaaaaa 159
>gb|AC152567.1| Ornithorhynchus anatinus chromosome UNK clone OABb-43A15, complete sequence Length = 119966 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 594 ctcccttctgcaatgaccta 613 |||||||||||||||||||| Sbjct: 75831 ctcccttctgcaatgaccta 75850
>ref|NM_190740.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2940 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 144 actttgagggtggtgcaacttgggcctt 171 ||||||| ||||||||||| |||||||| Sbjct: 2810 actttgaaggtggtgcaacctgggcctt 2837
>gb|AC008328.6| Drosophila melanogaster clone BACR09A04, complete sequence Length = 166722 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 attcgatgagaaaatagttg 58 |||||||||||||||||||| Sbjct: 137426 attcgatgagaaaatagttg 137445
>gb|AC126272.3| Mus musculus BAC clone RP23-48P22 from chromosome 14, complete sequence Length = 191606 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 80 ctgtgctatttgataaactg 99 |||||||||||||||||||| Sbjct: 42608 ctgtgctatttgataaactg 42589
>gb|AC126444.3| Mus musculus BAC clone RP24-136A8 from chromosome 14, complete sequence Length = 141017 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 80 ctgtgctatttgataaactg 99 |||||||||||||||||||| Sbjct: 111439 ctgtgctatttgataaactg 111420
>gb|AC011282.3| Homo sapiens BAC clone CTD-2009F22 from 7, complete sequence Length = 86106 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 107 atacttagcagtgagaatgg 126 |||||||||||||||||||| Sbjct: 25357 atacttagcagtgagaatgg 25376
>emb|AL359540.19| Human DNA sequence from clone RP4-534D1 on chromosome 1p34.1-35.3 Contains the 5' end of one variant of the ZSWIM5 gene for zinc finger SWIM domain containing 5, a novel gene (MGC15668), the MUTYH gene for mutY homolog (E. coli), the TOE1 gene for target of EGR1 member 1 (nuclear) and the 3' end of the TESK2 gene for testis-specific kinase 2, complete sequence Length = 99787 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 574 agctaagagcaggagttcag 593 |||||||||||||||||||| Sbjct: 68146 agctaagagcaggagttcag 68127
>emb|AL356267.27| Human DNA sequence from clone RP11-309G3 on chromosome 1 Contains the 5' end of the STX6 gene for syntaxin 6, the MR1 gene for major histocompatibility complex class I-related, the IER5 gene for immediate early response 5, the 5' end of a novel gene (LOC284646) and two CpG islands, complete sequence Length = 181808 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 atcttttcctgtgctatttg 91 |||||||||||||||||||| Sbjct: 12751 atcttttcctgtgctatttg 12732
>emb|AL354815.10| Human DNA sequence from clone RP11-760M1 on chromosome 13 Contains three novel genes, the 5' end of the TNFRSF19 gene for tumour necrosis factor receptor superfamily member 19 and two CpG islands, complete sequence Length = 168663 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 15 tttcgttatttttagctgcagttt 38 |||| ||||||||||||||||||| Sbjct: 128662 tttcattatttttagctgcagttt 128639
>emb|AL137066.15| Human DNA sequence from clone RP11-10I9 on chromosome 9 Contains the 5' end of the gene for a novel protein similar to spermatid WD-repeat protein (FLJ90410, FLJ35921), the gene for a novel protein similar to B-box and SPRY-domain containing protein (BSPRY) (FLJ20150), a novel gene (FLJ39748), a novel gene, the ALAD gene for aminolevulinate delta- dehydratase (ALADH), the POLE3 gene for the polymerase (DNA directed) epsilon 3 (p17 subunit) (p17, YBL1, Ybl1, CHRAC17, CHARAC17), the 5' end of the RGS3 gene for the regulator of G-protein signalling 3 (C2PA, RGP3, FLJ20370, PDZ-RGS3) and six CpG islands, complete sequence Length = 137718 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 587 agttcagctcccttctgcaa 606 |||||||||||||||||||| Sbjct: 64596 agttcagctcccttctgcaa 64615
>gb|AY319481.1| Homo sapiens aminolevulinate, delta-, dehydratase (ALAD) gene, complete cds Length = 8809 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 587 agttcagctcccttctgcaa 606 |||||||||||||||||||| Sbjct: 3645 agttcagctcccttctgcaa 3626
>gb|AC126564.7| Homo sapiens 12 BAC RP11-638F5 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 121242 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 462 atcaagaaaatgtaaaaata 481 |||||||||||||||||||| Sbjct: 15406 atcaagaaaatgtaaaaata 15387
>gb|AC002387.3| Arabidopsis thaliana chromosome 2 clone F4L23 map CIC02E07, complete sequence Length = 122928 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 456 gagagaatcaagaaaatgtaaaaa 479 |||| ||||||||||||||||||| Sbjct: 106237 gagaaaatcaagaaaatgtaaaaa 106214
>gb|AC016572.6| Homo sapiens chromosome 5 clone CTB-22L19, complete sequence Length = 143687 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 446 agtggatcaggagagaatca 465 |||||||||||||||||||| Sbjct: 19532 agtggatcaggagagaatca 19551
>gb|AC008329.3|AC008329 Drosophila melanogaster, chromosome 2L, region 28C-28D, BAC clone BACR31D05, complete sequence Length = 172633 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 attcgatgagaaaatagttg 58 |||||||||||||||||||| Sbjct: 38183 attcgatgagaaaatagttg 38202
>emb|BX821845.1|CNS0A86L Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL79ZE02 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 885 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 456 gagagaatcaagaaaatgtaaaaa 479 |||| ||||||||||||||||||| Sbjct: 47 gagaaaatcaagaaaatgtaaaaa 70
>gb|BT002787.1| Arabidopsis thaliana clone RAFL15-02-C10 (R20172) putative auxin-regulated protein (At2g45210) mRNA, complete cds Length = 1154 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 456 gagagaatcaagaaaatgtaaaaa 479 |||| ||||||||||||||||||| Sbjct: 136 gagaaaatcaagaaaatgtaaaaa 159
>dbj|BA000022.2| Synechocystis sp. PCC 6803 DNA, complete genome Length = 3573470 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 35 gtttattcgatgagaaaata 54 |||||||||||||||||||| Sbjct: 2245346 gtttattcgatgagaaaata 2245365
>gb|AC123027.4| Mus musculus BAC clone RP24-550H11 from 3, complete sequence Length = 191211 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 gtataatcttttcctgtgct 86 |||||||||||||||||||| Sbjct: 68685 gtataatcttttcctgtgct 68666
>emb|CR318656.3| Zebrafish DNA sequence from clone CH211-88D2 in linkage group 22, complete sequence Length = 87766 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 228 ctcatcagatgcttgtggag 247 |||||||||||||||||||| Sbjct: 52820 ctcatcagatgcttgtggag 52839 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 cagtttattcgatgagaaaa 52 |||||||||||||||||||| Sbjct: 12861 cagtttattcgatgagaaaa 12880
>gb|AE003619.3| Drosophila melanogaster chromosome 2L, section 28 of 83 of the complete sequence Length = 289516 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 attcgatgagaaaatagttg 58 |||||||||||||||||||| Sbjct: 8573 attcgatgagaaaatagttg 8592
>emb|AL049776.3|CNS00001 Human chromosome 14 DNA sequence BAC R-85K15 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 194385 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 460 gaatcaagaaaatgtaaaaa 479 |||||||||||||||||||| Sbjct: 155858 gaatcaagaaaatgtaaaaa 155839
>gb|AC004723.1|AC004723 Drosophila melanogaster, chromosome 2L, region 28C4-28D2, P1 clone DS00289, complete sequence Length = 52277 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 attcgatgagaaaatagttg 58 |||||||||||||||||||| Sbjct: 4085 attcgatgagaaaatagttg 4104
>gb|AC135109.5| Mus musculus BAC clone RP23-180O9 from 7, complete sequence Length = 183312 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 47 agaaaatagttgcaaacctt 66 |||||||||||||||||||| Sbjct: 81185 agaaaatagttgcaaacctt 81204
>emb|AL928981.7| Mouse DNA sequence from clone RP23-54O14 on chromosome 2, complete sequence Length = 110096 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 578 aagagcaggagttcagctcc 597 |||||||||||||||||||| Sbjct: 62027 aagagcaggagttcagctcc 62046
>emb|X64467.1|HSALADG H.sapiens ALAD gene for porphobilinogen synthase Length = 15913 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 587 agttcagctcccttctgcaa 606 |||||||||||||||||||| Sbjct: 12136 agttcagctcccttctgcaa 12117
>emb|AL732606.5| Mouse DNA sequence from clone RP23-271B17 on chromosome 11, complete sequence Length = 113285 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 cagtgagaatggtcctcttt 134 |||||||||||||||||||| Sbjct: 57059 cagtgagaatggtcctcttt 57078 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,038,350 Number of Sequences: 3902068 Number of extensions: 6038350 Number of successful extensions: 113555 Number of sequences better than 10.0: 52 Number of HSP's better than 10.0 without gapping: 52 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 113256 Number of HSP's gapped (non-prelim): 293 length of query: 632 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 609 effective length of database: 17,143,297,704 effective search space: 10440268301736 effective search space used: 10440268301736 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)