| Clone Name | bags38j01 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|D26105.1|BLYHEMH1 Barley mRNA for ferrochelatase Length = 1728 Score = 551 bits (278), Expect = e-154 Identities = 283/285 (99%) Strand = Plus / Plus Query: 1 atttttgttcaacctcttcgctgatccagatatcattcgactccctaggctgttcaggtt 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 471 atttttgttcaacctcttcgctgatccagatatcattcgactccctaggctgttcaggtt 530 Query: 61 tcttcaaagaccactggccaaacttatatctacttttagagctcctaagagtaaagaggg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 531 tcttcaaagaccactggccaaacttatatctacttttagagctcctaagagtaacgaggg 590 Query: 121 gtatgcctcaattggtggtggatcacctctgcggaaaattaccgacgagcaggcaaatgc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 591 gtatgcctcaattggtggtggatcacctctgcggaaaattaccgacgagcaggcaaatgc 650 Query: 181 tttgaaggttgcactaaaaagtaagaacttggaagcagatatttatgttggaatgcggna 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 651 tttgaaggttgcactaaaaagtaagaacttggaagcagatatttatgttggaatgcggta 710 Query: 241 ttggtacccattcaccgaagaagccattgatcagattaagaagga 285 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 711 ttggtacccattcaccgaagaagccattgatcagattaagaagga 755
>gb|AF020791.1|AF020791 Hordeum vulgare ferrochelatase (hemH) gene, complete cds Length = 7694 Score = 287 bits (145), Expect = 1e-74 Identities = 145/145 (100%) Strand = Plus / Plus Query: 29 gatatcattcgactccctaggctgttcaggtttcttcaaagaccactggccaaacttata 88 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3449 gatatcattcgactccctaggctgttcaggtttcttcaaagaccactggccaaacttata 3508 Query: 89 tctacttttagagctcctaagagtaaagaggggtatgcctcaattggtggtggatcacct 148 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3509 tctacttttagagctcctaagagtaaagaggggtatgcctcaattggtggtggatcacct 3568 Query: 149 ctgcggaaaattaccgacgagcagg 173 ||||||||||||||||||||||||| Sbjct: 3569 ctgcggaaaattaccgacgagcagg 3593 Score = 202 bits (102), Expect = 4e-49 Identities = 104/105 (99%) Strand = Plus / Plus Query: 170 caggcaaatgctttgaaggttgcactaaaaagtaagaacttggaagcagatatttatgtt 229 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3783 caggcaaatgctttgaaggttgcactaaaaagtaagaacttggaagcagatatttatgtt 3842 Query: 230 ggaatgcggnattggtacccattcaccgaagaagccattgatcag 274 ||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 3843 ggaatgcggtattggtacccattcaccgaagaagccattgatcag 3887 Score = 58.0 bits (29), Expect = 2e-05 Identities = 29/29 (100%) Strand = Plus / Plus Query: 1 atttttgttcaacctcttcgctgatccag 29 ||||||||||||||||||||||||||||| Sbjct: 2847 atttttgttcaacctcttcgctgatccag 2875
>gb|AY108431.1| Zea mays PCO068191 mRNA sequence Length = 1776 Score = 274 bits (138), Expect = 1e-70 Identities = 248/285 (87%) Strand = Plus / Plus Query: 1 atttttgttcaacctcttcgctgatccagatatcattcgactccctaggctgttcaggtt 60 |||||| |||||||| || |||||||||||||||||||||||||||||||| |||||||| Sbjct: 444 atttttattcaacctatttgctgatccagatatcattcgactccctaggctcttcaggtt 503 Query: 61 tcttcaaagaccactggccaaacttatatctacttttagagctcctaagagtaaagaggg 120 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || Sbjct: 504 tcttcaaagaccactggccaaacttatttctacttttagagctcctaagagtaaagaagg 563 Query: 121 gtatgcctcaattggtggtggatcacctctgcggaaaattaccgacgagcaggcaaatgc 180 |||||| |||||||||||||| || || | |||||||||| || || ||||| ||||| Sbjct: 564 gtatgcttcaattggtggtgggtcgccgttaaggaaaattactgatgaacaggcgaatgc 623 Query: 181 tttgaaggttgcactaaaaagtaagaacttggaagcagatatttatgttggaatgcggna 240 ||||||| |||| || ||| || || ||| | ||| | || |||||||| |||||| | Sbjct: 624 tttgaagattgccctggaaaagaaaaaattgaacgcaaacatatatgttgggatgcggta 683 Query: 241 ttggtacccattcaccgaagaagccattgatcagattaagaagga 285 ||||||||| ||||| ||||| ||||||||||| ||||| ||||| Sbjct: 684 ttggtaccctttcacagaagaggccattgatcaaattaaaaagga 728
>dbj|AK068174.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013129M17, full insert sequence Length = 1963 Score = 260 bits (131), Expect = 2e-66 Identities = 241/278 (86%) Strand = Plus / Plus Query: 8 ttcaacctcttcgctgatccagatatcattcgactccctaggctgttcaggtttcttcaa 67 |||||||| || ||||| ||||||||||| || | || ||||||||||||||||||||| Sbjct: 568 ttcaacctgtttgctgacccagatatcatccgtttgccaaggctgttcaggtttcttcaa 627 Query: 68 agaccactggccaaacttatatctacttttagagctcctaagagtaaagaggggtatgcc 127 |||||| ||||||| ||||| || |||||||||||||| |||||||| |||||||| || Sbjct: 628 agaccattggccaagcttatctccacttttagagctccaaagagtaaggaggggtacgct 687 Query: 128 tcaattggtggtggatcacctctgcggaaaattaccgacgagcaggcaaatgctttgaag 187 ||||| ||||| ||||||||| ||||||||||||| || ||||||||||||||||||||| Sbjct: 688 tcaatcggtggaggatcacctttgcggaaaattactgatgagcaggcaaatgctttgaag 747 Query: 188 gttgcactaaaaagtaagaacttggaagcagatatttatgttggaatgcggnattggtac 247 || ||||| |||| ||||| ||| | || |||| |||||||||||||| | |||||| Sbjct: 748 gtggcactgaaaaagaagaatttgaatgctaatatatatgttggaatgcgatactggtac 807 Query: 248 ccattcaccgaagaagccattgatcagattaagaagga 285 || || || ||||||||||||||||||||||||||||| Sbjct: 808 ccttttacagaagaagccattgatcagattaagaagga 845
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 149 bits (75), Expect = 6e-33 Identities = 114/127 (89%) Strand = Plus / Plus Query: 47 aggctgttcaggtttcttcaaagaccactggccaaacttatatctacttttagagctcct 106 ||||||||||||||||||||||||||| ||||||| ||||| || |||||||||||||| Sbjct: 7147184 aggctgttcaggtttcttcaaagaccattggccaagcttatctccacttttagagctcca 7147243 Query: 107 aagagtaaagaggggtatgcctcaattggtggtggatcacctctgcggaaaattaccgac 166 |||||||| |||||||| || ||||| ||||| ||||||||| ||||||||||||| || Sbjct: 7147244 aagagtaaggaggggtacgcttcaatcggtggaggatcacctttgcggaaaattactgat 7147303 Query: 167 gagcagg 173 ||||||| Sbjct: 7147304 gagcagg 7147310 Score = 83.8 bits (42), Expect = 3e-13 Identities = 89/105 (84%) Strand = Plus / Plus Query: 170 caggcaaatgctttgaaggttgcactaaaaagtaagaacttggaagcagatatttatgtt 229 |||||||||||||||||||| ||||| |||| ||||| ||| | || |||| |||||| Sbjct: 7147460 caggcaaatgctttgaaggtggcactgaaaaagaagaatttgaatgctaatatatatgtt 7147519 Query: 230 ggaatgcggnattggtacccattcaccgaagaagccattgatcag 274 |||||||| | |||||||| || || |||||||||||||||||| Sbjct: 7147520 ggaatgcgatactggtacccttttacagaagaagccattgatcag 7147564
>dbj|AP004756.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0592C05 Length = 150478 Score = 149 bits (75), Expect = 6e-33 Identities = 114/127 (89%) Strand = Plus / Plus Query: 47 aggctgttcaggtttcttcaaagaccactggccaaacttatatctacttttagagctcct 106 ||||||||||||||||||||||||||| ||||||| ||||| || |||||||||||||| Sbjct: 99263 aggctgttcaggtttcttcaaagaccattggccaagcttatctccacttttagagctcca 99322 Query: 107 aagagtaaagaggggtatgcctcaattggtggtggatcacctctgcggaaaattaccgac 166 |||||||| |||||||| || ||||| ||||| ||||||||| ||||||||||||| || Sbjct: 99323 aagagtaaggaggggtacgcttcaatcggtggaggatcacctttgcggaaaattactgat 99382 Query: 167 gagcagg 173 ||||||| Sbjct: 99383 gagcagg 99389 Score = 83.8 bits (42), Expect = 3e-13 Identities = 89/105 (84%) Strand = Plus / Plus Query: 170 caggcaaatgctttgaaggttgcactaaaaagtaagaacttggaagcagatatttatgtt 229 |||||||||||||||||||| ||||| |||| ||||| ||| | || |||| |||||| Sbjct: 99539 caggcaaatgctttgaaggtggcactgaaaaagaagaatttgaatgctaatatatatgtt 99598 Query: 230 ggaatgcggnattggtacccattcaccgaagaagccattgatcag 274 |||||||| | |||||||| || || |||||||||||||||||| Sbjct: 99599 ggaatgcgatactggtacccttttacagaagaagccattgatcag 99643
>gb|AY106755.1| Zea mays PCO095974 mRNA sequence Length = 755 Score = 139 bits (70), Expect = 5e-30 Identities = 100/110 (90%) Strand = Plus / Plus Query: 5 ttgttcaacctcttcgctgatccagatatcattcgactccctaggctgttcaggtttctt 64 ||||||||||| || ||||||||||||||||||||||| | |||||| |||||||| || Sbjct: 646 ttgttcaacctatttgctgatccagatatcattcgactgcttaggctcttcaggttcctc 705 Query: 65 caaagaccactggccaaacttatatctacttttagagctcctaagagtaa 114 |||||||||||||||||||| || ||||||||||||||||||||||||| Sbjct: 706 caaagaccactggccaaactaattcctacttttagagctcctaagagtaa 755
>emb|BX820158.1|CNS0A82Y Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS82ZH07 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1795 Score = 54.0 bits (27), Expect = 2e-04 Identities = 50/58 (86%) Strand = Plus / Plus Query: 224 tatgttggaatgcggnattggtacccattcaccgaagaagccattgatcagattaaga 281 |||||||| |||||| ||||| | |||||||| || ||||||||||| ||||| |||| Sbjct: 665 tatgttggtatgcggtattggcatccattcactgaggaagccattgaacagataaaga 722
>emb|CT009490.7| M.truncatula DNA sequence from clone MTH2-174P8 on chromosome 3, complete sequence Length = 107411 Score = 54.0 bits (27), Expect = 2e-04 Identities = 41/46 (89%) Strand = Plus / Minus Query: 219 atatttatgttggaatgcggnattggtacccattcaccgaagaagc 264 |||| |||||||| |||||| | |||||||||||||| |||||||| Sbjct: 48213 atatctatgttgggatgcggtactggtacccattcactgaagaagc 48168
>ref|NM_128592.2| Arabidopsis thaliana ferrochelatase AT2G30390 mRNA, complete cds Length = 1859 Score = 52.0 bits (26), Expect = 0.001 Identities = 46/53 (86%) Strand = Plus / Plus Query: 224 tatgttggaatgcggnattggtacccattcaccgaagaagccattgatcagat 276 |||||||| |||||| ||||| | |||||||| || ||||||||||| ||||| Sbjct: 685 tatgttggtatgcggtattggcatccattcactgaggaagccattgaacagat 737
>emb|AJ316569.1|NTA316569 Nicotiana tabacum mRNA for ferrochelatase precursor (FeCh gene) Length = 2118 Score = 52.0 bits (26), Expect = 0.001 Identities = 47/54 (87%) Strand = Plus / Plus Query: 97 tagagctcctaagagtaaagaggggtatgcctcaattggtggtggatcacctct 150 |||||| |||||||| ||||| || ||||| |||||||||||||| || ||||| Sbjct: 476 tagagcacctaagagcaaagaaggttatgcttcaattggtggtggctctcctct 529
>gb|BT008877.1| Arabidopsis thaliana At2g30390 mRNA, complete cds Length = 1539 Score = 52.0 bits (26), Expect = 0.001 Identities = 46/53 (86%) Strand = Plus / Plus Query: 224 tatgttggaatgcggnattggtacccattcaccgaagaagccattgatcagat 276 |||||||| |||||| ||||| | |||||||| || ||||||||||| ||||| Sbjct: 580 tatgttggtatgcggtattggcatccattcactgaggaagccattgaacagat 632
>gb|BT000465.1| Arabidopsis thaliana putative ferrochelatase precusor (At2g30390) mRNA, complete cds Length = 1860 Score = 52.0 bits (26), Expect = 0.001 Identities = 46/53 (86%) Strand = Plus / Plus Query: 224 tatgttggaatgcggnattggtacccattcaccgaagaagccattgatcagat 276 |||||||| |||||| ||||| | |||||||| || ||||||||||| ||||| Sbjct: 686 tatgttggtatgcggtattggcatccattcactgaggaagccattgaacagat 738
>emb|Y13156.1|ATFERROCH Arabidopsis thaliana mRNA for ferrochelatase Length = 1797 Score = 52.0 bits (26), Expect = 0.001 Identities = 46/53 (86%) Strand = Plus / Plus Query: 224 tatgttggaatgcggnattggtacccattcaccgaagaagccattgatcagat 276 |||||||| |||||| ||||| | |||||||| || ||||||||||| ||||| Sbjct: 604 tatgttggtatgcggtattggcatccattcactgaggaagccattgaacagat 656
>gb|AF428371.1|AF428371 Arabidopsis thaliana T9D9.20/T9D9.20 mRNA, complete cds Length = 1769 Score = 52.0 bits (26), Expect = 0.001 Identities = 46/53 (86%) Strand = Plus / Plus Query: 224 tatgttggaatgcggnattggtacccattcaccgaagaagccattgatcagat 276 |||||||| |||||| ||||| | |||||||| || ||||||||||| ||||| Sbjct: 630 tatgttggtatgcggtattggcatccattcactgaggaagccattgaacagat 682
>gb|AC148755.6| Medicago truncatula clone mth2-24n16, complete sequence Length = 119876 Score = 48.1 bits (24), Expect = 0.015 Identities = 75/92 (81%) Strand = Plus / Plus Query: 59 tttcttcaaagaccactggccaaacttatatctacttttagagctcctaagagtaaagag 118 |||||||||| |||||||| || || ||||| ||| ||||| || ||||| ||||| Sbjct: 84860 tttcttcaaaagccactggctcaatttgtatctgttttaagagcaccaaagagcaaagaa 84919 Query: 119 gggtatgcctcaattggtggtggatcacctct 150 || ||||| || |||||||||||||| ||||| Sbjct: 84920 ggctatgcttccattggtggtggatcccctct 84951
>gb|U93215.3| Arabidopsis thaliana chromosome 2 BAC T6B20 genomic sequence, complete sequence Length = 104861 Score = 48.1 bits (24), Expect = 0.015 Identities = 41/47 (87%) Strand = Plus / Plus Query: 224 tatgttggaatgcggnattggtacccattcaccgaagaagccattga 270 |||||||| |||||| ||||| | |||||||| || ||||||||||| Sbjct: 100507 tatgttggtatgcggtattggcatccattcactgaggaagccattga 100553
>gb|AC002338.3| Arabidopsis thaliana chromosome 2 clone T9D9 map m283, complete sequence Length = 79272 Score = 48.1 bits (24), Expect = 0.015 Identities = 41/47 (87%) Strand = Plus / Minus Query: 224 tatgttggaatgcggnattggtacccattcaccgaagaagccattga 270 |||||||| |||||| ||||| | |||||||| || ||||||||||| Sbjct: 68648 tatgttggtatgcggtattggcatccattcactgaggaagccattga 68602
>emb|AJ005802.1|STU5802 Solanum tuberosum, cultivar binje, mRNA for ferrochelatase Length = 2051 Score = 44.1 bits (22), Expect = 0.24 Identities = 118/150 (78%) Strand = Plus / Plus Query: 1 atttttgttcaacctcttcgctgatccagatatcattcgactccctaggctgttcaggtt 60 |||||| ||||| || || |||||||||||||| |||||| | || || |||| |||| Sbjct: 332 atttttattcaatctttttgctgatccagatattattcgattgccaagattgtttcggtt 391 Query: 61 tcttcaaagaccactggccaaacttatatctacttttagagctcctaagagtaaagaggg 120 | | ||||| |||||||| | | |||||| | |||||| || ||||| ||||| || Sbjct: 392 tttgcaaaggccactggcgcagttcatatctgttgctagagcacccaagagcaaagaagg 451 Query: 121 gtatgcctcaattggtggtggatcacctct 150 ||||| |||||||||||||| || ||||| Sbjct: 452 ttatgcttcaattggtggtggttctcctct 481 Score = 42.1 bits (21), Expect = 0.95 Identities = 47/56 (83%) Strand = Plus / Plus Query: 224 tatgttggaatgcggnattggtacccattcaccgaagaagccattgatcagattaa 279 |||||||| ||||| | ||| | |||||||| || ||||||||||| |||||||| Sbjct: 555 tatgttggtatgcgctactggcatccattcacagaggaagccattgagcagattaa 610
>gb|AC161516.9| Mus musculus chromosome 5, clone RP23-130C18, complete sequence Length = 226006 Score = 42.1 bits (21), Expect = 0.95 Identities = 24/25 (96%) Strand = Plus / Plus Query: 195 taaaaagtaagaacttggaagcaga 219 ||||||||||||||||| ||||||| Sbjct: 159141 taaaaagtaagaacttgaaagcaga 159165
>gb|AC133874.10| Mus musculus chromosome 19, clone RP23-81N16, complete sequence Length = 215113 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 agtaagaacttggaagcaga 219 |||||||||||||||||||| Sbjct: 34883 agtaagaacttggaagcaga 34902
>emb|AL023775.1|HS497J21 Human DNA sequence from clone RP3-497J21 on chromosome 6q26-27 Contains part of a variant of the RPS6KA2 gene for ribosomal protein S6 kinase, 90kD, polypeptide 2 (RSK3) and a IGF-II mRNA-binding protein 3 (KOC1) pseudogene, complete sequence Length = 129432 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 gacgagcaggcaaatgcttt 183 |||||||||||||||||||| Sbjct: 10809 gacgagcaggcaaatgcttt 10790
>gb|AC157823.2| Mus musculus BAC clone RP23-382L21 from chromosome 12, complete sequence Length = 203726 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 taaaaagtaagaacttggaa 214 |||||||||||||||||||| Sbjct: 72027 taaaaagtaagaacttggaa 72008
>gb|AF019664.1|AF019664 Homo sapiens cosmids 52b3, 189g5, ICRFc109N244QD2, P1 255h6, and PAC pDJ84g15 from chromosome 6q27 encompassing markers D6S193 and D6S297, complete sequence Length = 68940 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 164 gacgagcaggcaaatgcttt 183 |||||||||||||||||||| Sbjct: 8941 gacgagcaggcaaatgcttt 8960
>gb|AC115781.9| Mus musculus chromosome 19, clone RP23-167K23, complete sequence Length = 210190 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 agtaagaacttggaagcaga 219 |||||||||||||||||||| Sbjct: 203262 agtaagaacttggaagcaga 203281 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,524,476 Number of Sequences: 3902068 Number of extensions: 2524476 Number of successful extensions: 40570 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 25 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 40517 Number of HSP's gapped (non-prelim): 52 length of query: 287 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 265 effective length of database: 17,147,199,772 effective search space: 4544007939580 effective search space used: 4544007939580 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)