ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags38i03 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009527.1| Triticum aestivum clone wr1.pk0115.f5:fis, full insert mRNA sequence Length = 774 Score = 416 bits (210), Expect = e-113 Identities = 228/234 (97%) Strand = Plus / Plus Query: 11 aatattcccatcatggtgacaggacattccatgggaggggccatggcttcgttttgtgcc 70 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8 aatattcccatcatggtgacaggacattccatgggaggggccatggcttcgttttgtgcc 67 Query: 71 cttgatcttattgtcaactacgggttaaaggacgtgaccctgctgacatttgggcaacct 130 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 68 cttgatcttattgtcaactatgggttaaaggacgtgaccctgctgacatttgggcaacct 127 Query: 131 cggattggtaacgctgtgtttgcttcccactttaagatgtacttgccaaacgcaattcga 190 ||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||| Sbjct: 128 cggattggtaatgctgtgtttgctacccactttaagaaatacttgccaaacgcaattcga 187 Query: 191 gtaaccaacgcacatgatattgtgcctcatctacccccgtactaccagtacttc 244 || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 188 gttaccaacgcacatgatattgtgcctcatctacccccgtactaccagtacttc 241
>ref|XM_475145.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1029 Score = 192 bits (97), Expect = 4e-46 Identities = 210/245 (85%), Gaps = 2/245 (0%) Strand = Plus / Plus Query: 1 agcatatggcaatattcccatcatggtgacaggacattccatgggaggggccatggcttc 60 ||||||||| ||||||||||||||||| || || ||||| |||||||| || |||||||| Sbjct: 474 agcatatggtaatattcccatcatggtaactgggcattcgatgggaggagctatggcttc 533 Query: 61 gttttgtgcccttgatcttattgtcaactacgggttaaaggacgtgaccctgctgacatt 120 ||||||||| ||||| ||| | ||||||||| |||||||||| ||||| ||| | ||||| Sbjct: 534 gttttgtgcgcttgaccttgtggtcaactacaggttaaaggatgtgacactgataacatt 593 Query: 121 tgggcaacctcggattggtaacgctgtgtttgcttcccactttaagatgt-acttgccaa 179 ||| |||||||||||||| || |||||||||||||| || |||||| ||| | ||||||| Sbjct: 594 tggacaacctcggattggaaatgctgtgtttgcttcacattttaag-tgtcatttgccaa 652 Query: 180 acgcaattcgagtaaccaacgcacatgatattgtgcctcatctacccccgtactaccagt 239 | || |||||||| || || || || |||||||| |||||| ||||||| |||||||| | Sbjct: 653 atgcgattcgagtgactaatgcgcacgatattgttcctcatttacccccatactaccact 712 Query: 240 acttc 244 ||||| Sbjct: 713 acttc 717
>dbj|AK068781.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013159D11, full insert sequence Length = 1778 Score = 192 bits (97), Expect = 4e-46 Identities = 210/245 (85%), Gaps = 2/245 (0%) Strand = Plus / Plus Query: 1 agcatatggcaatattcccatcatggtgacaggacattccatgggaggggccatggcttc 60 ||||||||| ||||||||||||||||| || || ||||| |||||||| || |||||||| Sbjct: 997 agcatatggtaatattcccatcatggtaactgggcattcgatgggaggagctatggcttc 1056 Query: 61 gttttgtgcccttgatcttattgtcaactacgggttaaaggacgtgaccctgctgacatt 120 ||||||||| ||||| ||| | ||||||||| |||||||||| ||||| ||| | ||||| Sbjct: 1057 gttttgtgcgcttgaccttgtggtcaactacaggttaaaggatgtgacactgataacatt 1116 Query: 121 tgggcaacctcggattggtaacgctgtgtttgcttcccactttaagatgt-acttgccaa 179 ||| |||||||||||||| || |||||||||||||| || |||||| ||| | ||||||| Sbjct: 1117 tggacaacctcggattggaaatgctgtgtttgcttcacattttaag-tgtcatttgccaa 1175 Query: 180 acgcaattcgagtaaccaacgcacatgatattgtgcctcatctacccccgtactaccagt 239 | || |||||||| || || || || |||||||| |||||| ||||||| |||||||| | Sbjct: 1176 atgcgattcgagtgactaatgcgcacgatattgttcctcatttacccccatactaccact 1235 Query: 240 acttc 244 ||||| Sbjct: 1236 acttc 1240
>gb|AC119289.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0025P09, complete sequence Length = 167318 Score = 117 bits (59), Expect = 2e-23 Identities = 139/163 (85%), Gaps = 2/163 (1%) Strand = Plus / Minus Query: 83 gtcaactacgggttaaaggacgtgaccctgctgacatttgggcaacctcggattggtaac 142 ||||||||| |||||||||| ||||| ||| | |||||||| |||||||||||||| || Sbjct: 58666 gtcaactacaggttaaaggatgtgacactgataacatttggacaacctcggattggaaat 58607 Query: 143 gctgtgtttgcttcccactttaagatgt-acttgccaaacgcaattcgagtaaccaacgc 201 |||||||||||||| || |||||| ||| | |||||||| || |||||||| || || || Sbjct: 58606 gctgtgtttgcttcacattttaag-tgtcatttgccaaatgcgattcgagtgactaatgc 58548 Query: 202 acatgatattgtgcctcatctacccccgtactaccagtacttc 244 || |||||||| |||||| ||||||| |||||||| |||||| Sbjct: 58547 gcacgatattgttcctcatttacccccatactaccactacttc 58505 Score = 85.7 bits (43), Expect = 6e-14 Identities = 67/75 (89%) Strand = Plus / Minus Query: 1 agcatatggcaatattcccatcatggtgacaggacattccatgggaggggccatggcttc 60 ||||||||| ||||||||||||||||| || || ||||| |||||||| || |||||||| Sbjct: 59399 agcatatggtaatattcccatcatggtaactgggcattcgatgggaggagctatggcttc 59340 Query: 61 gttttgtgcccttga 75 ||||||||| ||||| Sbjct: 59339 gttttgtgcgcttga 59325
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 117 bits (59), Expect = 2e-23 Identities = 139/163 (85%), Gaps = 2/163 (1%) Strand = Plus / Minus Query: 83 gtcaactacgggttaaaggacgtgaccctgctgacatttgggcaacctcggattggtaac 142 ||||||||| |||||||||| ||||| ||| | |||||||| |||||||||||||| || Sbjct: 17798712 gtcaactacaggttaaaggatgtgacactgataacatttggacaacctcggattggaaat 17798653 Query: 143 gctgtgtttgcttcccactttaagatgt-acttgccaaacgcaattcgagtaaccaacgc 201 |||||||||||||| || |||||| ||| | |||||||| || |||||||| || || || Sbjct: 17798652 gctgtgtttgcttcacattttaag-tgtcatttgccaaatgcgattcgagtgactaatgc 17798594 Query: 202 acatgatattgtgcctcatctacccccgtactaccagtacttc 244 || |||||||| |||||| ||||||| |||||||| |||||| Sbjct: 17798593 gcacgatattgttcctcatttacccccatactaccactacttc 17798551 Score = 85.7 bits (43), Expect = 6e-14 Identities = 67/75 (89%) Strand = Plus / Minus Query: 1 agcatatggcaatattcccatcatggtgacaggacattccatgggaggggccatggcttc 60 ||||||||| ||||||||||||||||| || || ||||| |||||||| || |||||||| Sbjct: 17799445 agcatatggtaatattcccatcatggtaactgggcattcgatgggaggagctatggcttc 17799386 Query: 61 gttttgtgcccttga 75 ||||||||| ||||| Sbjct: 17799385 gttttgtgcgcttga 17799371
>ref|NM_190064.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 816 Score = 89.7 bits (45), Expect = 4e-15 Identities = 165/205 (80%) Strand = Plus / Plus Query: 15 ttcccatcatggtgacaggacattccatgggaggggccatggcttcgttttgtgcccttg 74 |||| |||||||| ||||| ||||| ||||| || || ||||||||||||||||| |||| Sbjct: 275 ttccgatcatggtaacagggcattcaatgggtggagctatggcttcgttttgtgcacttg 334 Query: 75 atcttattgtcaactacgggttaaaggacgtgaccctgctgacatttgggcaacctcgga 134 ||||| |||| ||||| ||| || | | |||| || ||||||||||||| ||||||| Sbjct: 335 atcttgttgtgaactatgggctagatggtgtgaagctaatgacatttgggcagcctcgga 394 Query: 135 ttggtaacgctgtgtttgcttcccactttaagatgtacttgccaaacgcaattcgagtaa 194 |||| || |||| ||||||||| || |||| |||||||| ||||||| ||||| | Sbjct: 395 ttggcaatgctgcttttgcttcctttttcaagaaatacttgcctcacgcaatccgagtta 454 Query: 195 ccaacgcacatgatattgtgcctca 219 || | | |||||||| |||||||| Sbjct: 455 cccatggtcatgatatcgtgcctca 479
>emb|AJ488508.1|TAE488508 Triticum aestivum mRNA for triacylglycerol lipase (lipase gene), cultivar Cadenza Length = 1186 Score = 83.8 bits (42), Expect = 2e-13 Identities = 138/170 (81%) Strand = Plus / Plus Query: 53 atggcttcgttttgtgcccttgatcttattgtcaactacgggttaaaggacgtgaccctg 112 |||||||| |||||||| ||||||||| |||| ||||||||||| | || |||| ||| Sbjct: 538 atggcttcattttgtgcacttgatcttgttgtgaactacgggttggatgatgtgaagctg 597 Query: 113 ctgacatttgggcaacctcggattggtaacgctgtgtttgcttcccactttaagatgtac 172 ||||||||||||||||||| | || || |||| |||||||| |||| |||| ||| Sbjct: 598 atgacatttgggcaacctcgtgtcggcaatgctgcttttgcttcttacttcaagagatac 657 Query: 173 ttgccaaacgcaattcgagtaaccaacgcacatgatattgtgcctcatct 222 ||||| |||| |||||||| || || ||| ||||||| || |||||||| Sbjct: 658 ttgcctcacgcgattcgagttactaatgcaaatgatatcgtccctcatct 707
>emb|AJ488507.1|TAE488507 Triticum aestivum mRNA for triacylglycerol lipase (lipase gene), cultivar Hereward Length = 1053 Score = 83.8 bits (42), Expect = 2e-13 Identities = 99/118 (83%) Strand = Plus / Plus Query: 15 ttcccatcatggtgacaggacattccatgggaggggccatggcttcgttttgtgcccttg 74 |||| |||||||| ||||| ||||| ||||| | || |||||||| |||||||| |||| Sbjct: 497 ttccgatcatggtcacagggcattcaatgggggcagctatggcttcattttgtgcacttg 556 Query: 75 atcttattgtcaactacgggttaaaggacgtgaccctgctgacatttgggcaacctcg 132 ||||| |||| ||||||||||| | || |||| ||| ||||||||||||||||||| Sbjct: 557 atcttgttgtgaactacgggttggatgatgtgaagctgatgacatttgggcaacctcg 614
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 67.9 bits (34), Expect = 1e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 15 ttcccatcatggtgacaggacattccatgggaggggccatggcttcgttttgtgcccttg 74 |||| |||||||| ||||| ||||| ||||| || || ||||||||||||||||| |||| Sbjct: 41095240 ttccgatcatggtaacagggcattcaatgggtggagctatggcttcgttttgtgcacttg 41095181 Query: 75 atcttattgt 84 ||||| |||| Sbjct: 41095180 atcttgttgt 41095171 Score = 52.0 bits (26), Expect = 8e-04 Identities = 86/106 (81%) Strand = Plus / Minus Query: 114 tgacatttgggcaacctcggattggtaacgctgtgtttgcttcccactttaagatgtact 173 ||||||||||||| ||||||||||| || |||| ||||||||| || |||| |||| Sbjct: 41093893 tgacatttgggcagcctcggattggcaatgctgcttttgcttcctttttcaagaaatact 41093834 Query: 174 tgccaaacgcaattcgagtaaccaacgcacatgatattgtgcctca 219 |||| ||||||| ||||| ||| | | |||||||| |||||||| Sbjct: 41093833 tgcctcacgcaatccgagttacccatggtcatgatatcgtgcctca 41093788
>dbj|AP003266.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0492G09 Length = 142239 Score = 67.9 bits (34), Expect = 1e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 15 ttcccatcatggtgacaggacattccatgggaggggccatggcttcgttttgtgcccttg 74 |||| |||||||| ||||| ||||| ||||| || || ||||||||||||||||| |||| Sbjct: 132170 ttccgatcatggtaacagggcattcaatgggtggagctatggcttcgttttgtgcacttg 132111 Query: 75 atcttattgt 84 ||||| |||| Sbjct: 132110 atcttgttgt 132101 Score = 52.0 bits (26), Expect = 8e-04 Identities = 86/106 (81%) Strand = Plus / Minus Query: 114 tgacatttgggcaacctcggattggtaacgctgtgtttgcttcccactttaagatgtact 173 ||||||||||||| ||||||||||| || |||| ||||||||| || |||| |||| Sbjct: 130823 tgacatttgggcagcctcggattggcaatgctgcttttgcttcctttttcaagaaatact 130764 Query: 174 tgccaaacgcaattcgagtaaccaacgcacatgatattgtgcctca 219 |||| ||||||| ||||| ||| | | |||||||| |||||||| Sbjct: 130763 tgcctcacgcaatccgagttacccatggtcatgatatcgtgcctca 130718
>dbj|AK101890.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033070N06, full insert sequence Length = 2752 Score = 67.9 bits (34), Expect = 1e-08 Identities = 61/70 (87%) Strand = Plus / Plus Query: 15 ttcccatcatggtgacaggacattccatgggaggggccatggcttcgttttgtgcccttg 74 |||| |||||||| ||||| ||||| ||||| || || ||||||||||||||||| |||| Sbjct: 776 ttccgatcatggtaacagggcattcaatgggtggagctatggcttcgttttgtgcacttg 835 Query: 75 atcttattgt 84 ||||| |||| Sbjct: 836 atcttgttgt 845 Score = 52.0 bits (26), Expect = 8e-04 Identities = 86/106 (81%) Strand = Plus / Plus Query: 114 tgacatttgggcaacctcggattggtaacgctgtgtttgcttcccactttaagatgtact 173 ||||||||||||| ||||||||||| || |||| ||||||||| || |||| |||| Sbjct: 2123 tgacatttgggcagcctcggattggcaatgctgcttttgcttcctttttcaagaaatact 2182 Query: 174 tgccaaacgcaattcgagtaaccaacgcacatgatattgtgcctca 219 |||| ||||||| ||||| ||| | | |||||||| |||||||| Sbjct: 2183 tgcctcacgcaatccgagttacccatggtcatgatatcgtgcctca 2228
>ref|NM_121869.1| Arabidopsis thaliana triacylglycerol lipase AT5G18640 mRNA, complete cds Length = 1110 Score = 61.9 bits (31), Expect = 9e-07 Identities = 46/51 (90%) Strand = Plus / Plus Query: 19 catcatggtgacaggacattccatgggaggggccatggcttcgttttgtgc 69 |||||||||||| || ||||| |||||||| ||||||||||| |||||||| Sbjct: 543 catcatggtgactggtcattcaatgggaggagccatggcttccttttgtgc 593
>gb|AC051627.4|AC051627 Genomic Sequence For Arabidopsis thaliana Clone T1A4 From Chromosome V, complete sequence Length = 85746 Score = 61.9 bits (31), Expect = 9e-07 Identities = 46/51 (90%) Strand = Plus / Minus Query: 19 catcatggtgacaggacattccatgggaggggccatggcttcgttttgtgc 69 |||||||||||| || ||||| |||||||| ||||||||||| |||||||| Sbjct: 47864 catcatggtgactggtcattcaatgggaggagccatggcttccttttgtgc 47814 Score = 52.0 bits (26), Expect = 8e-04 Identities = 44/50 (88%) Strand = Plus / Minus Query: 19 catcatggtgacaggacattccatgggaggggccatggcttcgttttgtg 68 |||||| ||||| || ||||| |||||||| ||||||||||| ||||||| Sbjct: 57917 catcatagtgaccggtcattcaatgggaggagccatggcttccttttgtg 57868
>ref|NM_203076.1| Arabidopsis thaliana triacylglycerol lipase AT5G18630 transcript variant AT5G18630.3 mRNA, complete cds Length = 1157 Score = 52.0 bits (26), Expect = 8e-04 Identities = 44/50 (88%) Strand = Plus / Plus Query: 19 catcatggtgacaggacattccatgggaggggccatggcttcgttttgtg 68 |||||| ||||| || ||||| |||||||| ||||||||||| ||||||| Sbjct: 729 catcatagtgaccggtcattcaatgggaggagccatggcttccttttgtg 778
>ref|NM_180517.2| Arabidopsis thaliana triacylglycerol lipase AT5G18630 transcript variant AT5G18630.1 mRNA, complete cds Length = 1585 Score = 52.0 bits (26), Expect = 8e-04 Identities = 44/50 (88%) Strand = Plus / Plus Query: 19 catcatggtgacaggacattccatgggaggggccatggcttcgttttgtg 68 |||||| ||||| || ||||| |||||||| ||||||||||| ||||||| Sbjct: 729 catcatagtgaccggtcattcaatgggaggagccatggcttccttttgtg 778
>ref|NM_121868.2| Arabidopsis thaliana triacylglycerol lipase AT5G18630 transcript variant AT5G18630.2 mRNA, complete cds Length = 1606 Score = 52.0 bits (26), Expect = 8e-04 Identities = 44/50 (88%) Strand = Plus / Plus Query: 19 catcatggtgacaggacattccatgggaggggccatggcttcgttttgtg 68 |||||| ||||| || ||||| |||||||| ||||||||||| ||||||| Sbjct: 750 catcatagtgaccggtcattcaatgggaggagccatggcttccttttgtg 799
>gb|BT015039.1| Arabidopsis thaliana At5g18630 gene, complete cds Length = 1077 Score = 52.0 bits (26), Expect = 8e-04 Identities = 44/50 (88%) Strand = Plus / Plus Query: 19 catcatggtgacaggacattccatgggaggggccatggcttcgttttgtg 68 |||||| ||||| || ||||| |||||||| ||||||||||| ||||||| Sbjct: 510 catcatagtgaccggtcattcaatgggaggagccatggcttccttttgtg 559
>gb|BT000744.1| Arabidopsis thaliana clone RAFL09-77-J22 (R19507) putative triacylglycerol lipase (At5g18630) mRNA, complete cds Length = 1609 Score = 52.0 bits (26), Expect = 8e-04 Identities = 44/50 (88%) Strand = Plus / Plus Query: 19 catcatggtgacaggacattccatgggaggggccatggcttcgttttgtg 68 |||||| ||||| || ||||| |||||||| ||||||||||| ||||||| Sbjct: 750 catcatagtgaccggtcattcaatgggaggagccatggcttccttttgtg 799
>gb|AY058096.1| Arabidopsis thaliana AT5g18630/T1A4_10 mRNA, complete cds Length = 1574 Score = 52.0 bits (26), Expect = 8e-04 Identities = 44/50 (88%) Strand = Plus / Plus Query: 19 catcatggtgacaggacattccatgggaggggccatggcttcgttttgtg 68 |||||| ||||| || ||||| |||||||| ||||||||||| ||||||| Sbjct: 718 catcatagtgaccggtcattcaatgggaggagccatggcttccttttgtg 767
>emb|BX830727.1|CNS09ZGS Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS18ZF02 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1491 Score = 44.1 bits (22), Expect = 0.20 Identities = 37/42 (88%) Strand = Plus / Plus Query: 19 catcatggtgacaggacattccatgggaggggccatggcttc 60 |||||| ||||| || ||||| |||||||| ||||||||||| Sbjct: 729 catcatagtgaccggtcattcaatgggaggagccatggcttc 770
>gb|AC148001.6| Mus musculus BAC clone RP24-82P9 from chromosome 18, complete sequence Length = 181022 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Plus Query: 12 atattcccatcatggtgacag 32 ||||||||||||||||||||| Sbjct: 129455 atattcccatcatggtgacag 129475
>gb|BC073448.1| Xenopus laevis MGC80950 protein, mRNA (cDNA clone MGC:80950 IMAGE:5516288), complete cds Length = 1525 Score = 42.1 bits (21), Expect = 0.80 Identities = 24/25 (96%) Strand = Plus / Plus Query: 97 aaaggacgtgaccctgctgacattt 121 |||| |||||||||||||||||||| Sbjct: 1350 aaagcacgtgaccctgctgacattt 1374
>tpg|BK000049.1| TPA: TPA_exp: Xenopus laevis glutamine synthetase (gso3) mRNA, complete cds Length = 1554 Score = 42.1 bits (21), Expect = 0.80 Identities = 24/25 (96%) Strand = Plus / Plus Query: 97 aaaggacgtgaccctgctgacattt 121 |||| |||||||||||||||||||| Sbjct: 1388 aaagcacgtgaccctgctgacattt 1412
>gb|AC073254.6| Homo sapiens BAC clone RP11-176L22 from 2, complete sequence Length = 83528 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Minus Query: 30 caggacattccatgggagggg 50 ||||||||||||||||||||| Sbjct: 29609 caggacattccatgggagggg 29589
>gb|AF549925.1| Xenopus laevis clone S10-46-D7 mRNA sequence Length = 721 Score = 42.1 bits (21), Expect = 0.80 Identities = 24/25 (96%) Strand = Plus / Plus Query: 97 aaaggacgtgaccctgctgacattt 121 |||| |||||||||||||||||||| Sbjct: 646 aaagcacgtgaccctgctgacattt 670
>gb|AC147377.4| Mus musculus BAC clone RP23-156K23 from chromosome 5, complete sequence Length = 236084 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 ttccatgggaggggccatgg 56 |||||||||||||||||||| Sbjct: 127440 ttccatgggaggggccatgg 127459
>emb|AL669987.1|NCB12N19 Neurospora crassa DNA linkage group II BAC clone B12N19 Length = 42273 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 gtaacgctgtgtttgcttcc 157 |||||||||||||||||||| Sbjct: 21254 gtaacgctgtgtttgcttcc 21273 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,622,924 Number of Sequences: 3902068 Number of extensions: 1622924 Number of successful extensions: 29723 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 27 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 29664 Number of HSP's gapped (non-prelim): 59 length of query: 244 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 222 effective length of database: 17,147,199,772 effective search space: 3806678349384 effective search space used: 3806678349384 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
