ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags38h01 |
|---|---|
| Clone Library Name | barley_pub |
>JI60_HORVU (Q00531) 60 kDa jasmonate-induced protein (EC 3.2.2.22) (rRNA| N-glycosidase) Length = 560 Score = 181 bits (460), Expect = 3e-46 Identities = 90/90 (100%), Positives = 90/90 (100%) Frame = +3 Query: 3 WGDLSTALLSWMDKQYKDDATIFKKFNGIGITNGEEALAVVRLVKLVIRSNMAAAPTTDE 182 WGDLSTALLSWMDKQYKDDATIFKKFNGIGITNGEEALAVVRLVKLVIRSNMAAAPTTDE Sbjct: 234 WGDLSTALLSWMDKQYKDDATIFKKFNGIGITNGEEALAVVRLVKLVIRSNMAAAPTTDE 293 Query: 183 QLLAYAQLPKHGRYMAEVFAVRIPATAGGD 272 QLLAYAQLPKHGRYMAEVFAVRIPATAGGD Sbjct: 294 QLLAYAQLPKHGRYMAEVFAVRIPATAGGD 323
>MEN1_HUMAN (O00255) Menin| Length = 615 Score = 32.7 bits (73), Expect = 0.25 Identities = 21/55 (38%), Positives = 28/55 (50%) Frame = +1 Query: 97 PTGKKPWLWCGL*S*SSEATWRPPRQPTSSCSRTLNYPNTGATWRRCSPCAFPPP 261 P KKP L GL + A PPR+P + + T P G+T + +P A PPP Sbjct: 498 PPPKKPALDKGLGT-GQGAVSGPPRKPPGTVAGTARGPEGGSTAQVPAPAASPPP 551
>PPRB_HUMAN (Q15648) Peroxisome proliferator-activated receptor-binding protein| (PBP) (PPAR-binding protein) (Thyroid hormone receptor-associated protein complex 220 kDa component) (Trap220) (Thyroid receptor-interacting protein 2) (TRIP-2) (p53 regulator Length = 1581 Score = 30.8 bits (68), Expect = 0.94 Identities = 20/55 (36%), Positives = 27/55 (49%) Frame = +1 Query: 70 SKNSMVSG*PTGKKPWLWCGL*S*SSEATWRPPRQPTSSCSRTLNYPNTGATWRR 234 SKNS SG G P GL S SS +P +P+S + +L+ PN + R Sbjct: 1143 SKNSSQSGGKPGSSPITKHGLSSGSSSTKMKPQGKPSSLMNPSLSKPNISPSHSR 1197
>FBX22_MOUSE (Q78JE5) F-box only protein 22| Length = 402 Score = 29.3 bits (64), Expect = 2.7 Identities = 19/59 (32%), Positives = 27/59 (45%) Frame = -2 Query: 276 AGLLRRWRECARRTPPPCSARVWVVERTRAAARRLSGRPPCCFG*LASQAAPQPRLLPR 100 AG+ R WREC RR + W+ A A L G C + ++A R+LP+ Sbjct: 45 AGVCRLWRECVRRVLRTHRSVTWISAGV-AEAGHLEGH---CLVRVVAEALENVRILPQ 99
>PERT_PIG (P09933) Thyroid peroxidase precursor (EC 1.11.1.8) (TPO)| Length = 926 Score = 29.3 bits (64), Expect = 2.7 Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 4/75 (5%) Frame = +3 Query: 3 WGDLSTALLSWMDKQYKDDATIFKKFNGIGITNGEEALAVVRLVKLVIRSNMAAAPTTDE 182 WG +TAL W+ Y+D T + +N + NG V + + VI + A T D Sbjct: 166 WGASNTALARWLPPAYEDGVTEPRGWNPHFLYNGLPLPPVREVTRQVIHVSNEAV-TEDG 224 Query: 183 Q----LLAYAQLPKH 215 Q L+A+ Q H Sbjct: 225 QYSDLLMAWGQYIDH 239
>ZDS_MAIZE (Q9ZTP4) Zeta-carotene desaturase, chloroplast precursor (EC| 1.14.99.30) (Carotene 7,8-desaturase) Length = 570 Score = 29.3 bits (64), Expect = 2.7 Identities = 15/38 (39%), Positives = 21/38 (55%) Frame = +1 Query: 163 PPRQPTSSCSRTLNYPNTGATWRRCSPCAFPPPPEETR 276 PPR+ ++ +R+ T TWR+ S FPP PE R Sbjct: 27 PPRRASAVAARSTV---TSPTWRQRSQRLFPPEPEHYR 61
>CBP_MOUSE (P45481) CREB-binding protein (EC 2.3.1.48)| Length = 2441 Score = 29.3 bits (64), Expect = 2.7 Identities = 16/39 (41%), Positives = 19/39 (48%) Frame = -3 Query: 173 CRGGRHVASDD*LHKPHHSQGFFPVGYPDTIEFFENGCI 57 C G HV D L PH QG + Y D+I FF C+ Sbjct: 1409 CFFGMHV-QDTALIAPHQIQGCVYISYLDSIHFFRPRCL 1446
>HAH4_HALME (Q48236) Halocin-H4 precursor| Length = 359 Score = 28.9 bits (63), Expect = 3.6 Identities = 18/80 (22%), Positives = 41/80 (51%), Gaps = 1/80 (1%) Frame = +3 Query: 24 LLSWMDKQYKDDATIFKKFNGIGITNGEEA-LAVVRLVKLVIRSNMAAAPTTDEQLLAYA 200 +++W+ Q++DD+++ +K++ G++ A + L + + SN + T D +A+ Sbjct: 204 MVNWIASQHEDDSSLKRKWDYDGLSGPLYADSSTYLLARDEMTSNSYESFTIDNIAVAFP 263 Query: 201 QLPKHGRYMAEVFAVRIPAT 260 + P +Y A P+T Sbjct: 264 EFPVRTKYYVTFTAPDDPST 283
>PPRB_MOUSE (Q925J9) Peroxisome proliferator-activated receptor-binding protein| (PBP) (PPAR-binding protein) (Thyroid hormone receptor-associated protein complex 220 kDa component) (Trap220) (Thyroid receptor-interacting protein 2) (TRIP-2) Length = 1575 Score = 28.9 bits (63), Expect = 3.6 Identities = 18/55 (32%), Positives = 27/55 (49%) Frame = +1 Query: 70 SKNSMVSG*PTGKKPWLWCGL*S*SSEATWRPPRQPTSSCSRTLNYPNTGATWRR 234 SKNS +G G P GL S SS +P +P+S + +++ PN + R Sbjct: 1145 SKNSSQTGGKPGSSPITKHGLSSGSSSTKMKPQGKPSSLMNPSISKPNISPSHSR 1199
>PKHA4_HUMAN (Q9H4M7) Pleckstrin homology domain-containing family A member 4| (Phosphoinositol 3-phosphate-binding protein 1) (PEPP-1) Length = 779 Score = 28.9 bits (63), Expect = 3.6 Identities = 14/31 (45%), Positives = 19/31 (61%) Frame = -2 Query: 267 LRRWRECARRTPPPCSARVWVVERTRAAARR 175 +RR +EC R P P S R+ + RT + ARR Sbjct: 598 MRRNQECGRPFPRPTSPRLLTLGRTLSPARR 628
>Y4II_RHISN (P55492) Hypothetical 76.2 kDa protein y4iI| Length = 703 Score = 28.5 bits (62), Expect = 4.7 Identities = 18/58 (31%), Positives = 28/58 (48%) Frame = +3 Query: 99 NGEEALAVVRLVKLVIRSNMAAAPTTDEQLLAYAQLPKHGRYMAEVFAVRIPATAGGD 272 +GE L V+ + + V+ + +QLLA A H R+M V P+T GG+ Sbjct: 372 DGEPPLGVLSIARRVVTALRQQVRFKPDQLLAVAAEGTHSRFMISPHRVP-PSTPGGE 428
>IL6RA_PIG (O18796) Interleukin-6 receptor alpha chain precursor (IL-6R-alpha)| (IL-6R 1) (CD126 antigen) Length = 467 Score = 28.5 bits (62), Expect = 4.7 Identities = 12/27 (44%), Positives = 13/27 (48%) Frame = +1 Query: 163 PPRQPTSSCSRTLNYPNTGATWRRCSP 243 PP +P SC R N G WR SP Sbjct: 113 PPEEPQLSCFRKSPLSNVGCEWRPRSP 139
>GLNA_SYNP2 (P28605) Glutamine synthetase (EC 6.3.1.2) (Glutamate--ammonia| ligase) Length = 473 Score = 28.5 bits (62), Expect = 4.7 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = -3 Query: 164 GRHVASDD*LHKPHHSQGFFPVGYPDTIE 78 GR + HKP + QG+FPV DT++ Sbjct: 164 GRKEPGGNLAHKPGYKQGYFPVPPTDTLQ 192
>ECO1_ASHGO (Q757N6) N-acetyltransferase ECO1 (EC 2.3.1.-) (Establishment of| cohesion protein 1) Length = 266 Score = 28.1 bits (61), Expect = 6.1 Identities = 10/29 (34%), Positives = 17/29 (58%) Frame = +1 Query: 160 RPPRQPTSSCSRTLNYPNTGATWRRCSPC 246 R PR+PT L + ++ AT ++C+ C Sbjct: 8 RSPRKPTKLLQSRLKFAHSSATLKKCTEC 36
>STE12_YEAST (P13574) Protein STE12| Length = 688 Score = 27.7 bits (60), Expect = 7.9 Identities = 10/30 (33%), Positives = 12/30 (40%) Frame = +1 Query: 175 PTSSCSRTLNYPNTGATWRRCSPCAFPPPP 264 P C + YP T +W P A P P Sbjct: 488 PPEGCDNNMLYPQTATSWNVLPPQAMQPAP 517
>PERT_MOUSE (P35419) Thyroid peroxidase precursor (EC 1.11.1.8) (TPO)| Length = 914 Score = 27.7 bits (60), Expect = 7.9 Identities = 23/87 (26%), Positives = 42/87 (48%) Frame = +3 Query: 3 WGDLSTALLSWMDKQYKDDATIFKKFNGIGITNGEEALAVVRLVKLVIRSNMAAAPTTDE 182 WG +TAL W+ Y+D + K +N + +G V + + +I+ + A T D+ Sbjct: 160 WGASNTALARWLPPVYEDGFSQPKGWNPNFLYHGFPLPPVREVTRHLIQVSNEAV-TEDD 218 Query: 183 QLLAYAQLPKHGRYMAEVFAVRIPATA 263 Q + LP G+Y+ A+ +T+ Sbjct: 219 QYSDF--LPVWGQYIDHDIALTPQSTS 243
>7LESS_DROME (P13368) Protein sevenless (EC 2.7.10.1)| Length = 2554 Score = 27.7 bits (60), Expect = 7.9 Identities = 16/52 (30%), Positives = 22/52 (42%) Frame = +2 Query: 2 VG*LVHRAAQLDGQAIQGRCNHFQKIQWYRDNQRGRSLGCGAACEASHPKQH 157 VG +H +L+ A++ R H Q Q Y R GAA A+ H Sbjct: 1342 VGSELHEELRLNQSALEARVEHLQPDQTYHFQVEARVAATGAAAGAASHALH 1393
>ADD3_STRCO (Q9RDE5) Probable adenosine deaminase 3 (EC 3.5.4.4) (Adenosine| aminohydrolase 3) Length = 340 Score = 27.7 bits (60), Expect = 7.9 Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 2/70 (2%) Frame = +3 Query: 54 DDATIFKKFNGIGITNGEEALAVV--RLVKLVIRSNMAAAPTTDEQLLAYAQLPKHGRYM 227 DD F + G +AL + RL +L S +A+ DE+L A RY+ Sbjct: 278 DDPAYFGGYAGDNFDAVRQALGLTGERLRELARNSFLASFLEDDEELRA--------RYL 329 Query: 228 AEVFAVRIPA 257 AEV A R PA Sbjct: 330 AEVEAYRFPA 339 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 46,560,463 Number of Sequences: 219361 Number of extensions: 949036 Number of successful extensions: 3182 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 3095 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3182 length of database: 80,573,946 effective HSP length: 67 effective length of database: 65,876,759 effective search space used: 1581042216 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
