ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags38h01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|X66376.1|HVJASIP H.vulgare mRNA for jasmonate-induced protein 533 e-149
2gb|AY109619.1| Zea mays CL9605_1 mRNA sequence 139 5e-30
3gb|BT017846.1| Zea mays clone EL01N0510E02.c mRNA sequence 92 1e-15
4gb|AC120527.3| Oryza sativa (japonica cultivar-group) chromosome... 44 0.23
5dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.23
6gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 44 0.23
7ref|XM_640149.1| Dictyostelium discoideum hypothetical protein (... 42 0.91
8gb|AC161793.9| Mus musculus chromosome 7, clone RP23-80J7, compl... 42 0.91
9gb|AC116963.2| Dictyostelium discoideum chromosome 2 map 4657875... 42 0.91
10emb|BX822321.1|CNS0A7SK Arabidopsis thaliana Full-length cDNA Co... 42 0.91
11gb|AC004863.5|AC004863 Homo sapiens PAC clone RP4-708P22 from 7,... 40 3.6
12emb|BX119965.9| Zebrafish DNA sequence from clone RP71-86I6 in l... 40 3.6
13gb|AC166834.2| Mus musculus BAC clone RP23-158D24 from chromosom... 40 3.6

>emb|X66376.1|HVJASIP H.vulgare mRNA for jasmonate-induced protein
          Length = 1892

 Score =  533 bits (269), Expect = e-149
 Identities = 272/273 (99%)
 Strand = Plus / Plus

                                                                        
Query: 1    agtggggtgacttgtccaccgcgctgctcagctggatggacaagcaatacaaggacgatg 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750  agtggggtgacttgtccaccgcgctgctcagctggatggacaagcaatacaaggacgatg 809

                                                                        
Query: 61   caaccattttcaaaaaattcaatggtatcgggataaccaacggggaagaagccttggctg 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810  caaccattttcaaaaaattcaatggtatcgggataaccaacggggaagaagccttggctg 869

                                                                        
Query: 121  tggtgcggcttgtgaagctagtcatccgaagcaacatggcggccgccccgacaaccgacg 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870  tggtgcggcttgtgaagctagtcatccgaagcaacatggcggccgccccgacaaccgacg 929

                                                                        
Query: 181  agcagctgctcgcgtacgctcaactacccaaacacgggcgctacatggcggaggtgttcg 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 930  agcagctgctcgcgtacgctcaactacccaaacacgggcgctacatggcggaggtgttcg 989

                                             
Query: 241  ccgtgcgcattcccgccaccgccggaggagacc 273
            |||||||||| ||||||||||||||||||||||
Sbjct: 990  ccgtgcgcatccccgccaccgccggaggagacc 1022



to top

>gb|AY109619.1| Zea mays CL9605_1 mRNA sequence
          Length = 1251

 Score =  139 bits (70), Expect = 5e-30
 Identities = 97/106 (91%)
 Strand = Plus / Minus

                                                                        
Query: 172  caaccgacgagcagctgctcgcgtacgctcaactacccaaacacgggcgctacatggcgg 231
            ||||||||||||| ||||| ||||||||| | || |||||||| || ||| |||||||||
Sbjct: 1009 caaccgacgagcaactgctggcgtacgctgagctgcccaaacatggccgcgacatggcgg 950

                                                          
Query: 232  aggtgttcgccgtgcgcattcccgccaccgccggaggagacccgcc 277
            ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 949  aggtgttcgccgtgcgcatccccgccaccgccggaggagacccgcc 904



to top

>gb|BT017846.1| Zea mays clone EL01N0510E02.c mRNA sequence
          Length = 1034

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 91/106 (85%)
 Strand = Plus / Plus

                                                                       
Query: 172 caaccgacgagcagctgctcgcgtacgctcaactacccaaacacgggcgctacatggcgg 231
           |||| |||||||| ||||| ||||||||| | || |||| ||| || ||| ||  || ||
Sbjct: 9   caactgacgagcaactgctggcgtacgctgagctgcccatacatggccgcgactcggagg 68

                                                         
Query: 232 aggtgttcgccgtgcgcattcccgccaccgccggaggagacccgcc 277
           ||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 69  aggtgttcgccgtgcgcatccccgccaccgccggaggaaacccgcc 114



to top

>gb|AC120527.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0011J22
              map R10571S, complete sequence
          Length = 154441

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 223    acatggcggaggtgttcgccgtgcgc 248
              ||||||||||||| ||||||||||||
Sbjct: 149843 acatggcggaggtcttcgccgtgcgc 149818



to top

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 223     acatggcggaggtgttcgccgtgcgc 248
               ||||||||||||| ||||||||||||
Sbjct: 3165142 acatggcggaggtcttcgccgtgcgc 3165167



to top

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 223     acatggcggaggtgttcgccgtgcgc 248
               ||||||||||||| ||||||||||||
Sbjct: 3173847 acatggcggaggtcttcgccgtgcgc 3173872



to top

>ref|XM_640149.1| Dictyostelium discoideum hypothetical protein (DDB0203726), partial
           mRNA
          Length = 1041

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 63  accattttcaaaaaattcaat 83
           |||||||||||||||||||||
Sbjct: 381 accattttcaaaaaattcaat 401



to top

>gb|AC161793.9| Mus musculus chromosome 7, clone RP23-80J7, complete sequence
          Length = 268158

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 64     ccattttcaaaaaattcaatg 84
              |||||||||||||||||||||
Sbjct: 239503 ccattttcaaaaaattcaatg 239483



to top

>gb|AC116963.2| Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4,
             complete sequence
          Length = 257109

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 63    accattttcaaaaaattcaat 83
             |||||||||||||||||||||
Sbjct: 54408 accattttcaaaaaattcaat 54388



to top

>emb|BX822321.1|CNS0A7SK Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB28ZG10 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 633

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 46  aatacaaggacgatgcaacca 66
           |||||||||||||||||||||
Sbjct: 230 aatacaaggacgatgcaacca 250



to top

>gb|AC004863.5|AC004863 Homo sapiens PAC clone RP4-708P22 from 7, complete sequence
          Length = 133030

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 112   ccttggctgtggtgcggctt 131
             ||||||||||||||||||||
Sbjct: 23758 ccttggctgtggtgcggctt 23739



to top

>emb|BX119965.9| Zebrafish DNA sequence from clone RP71-86I6 in linkage group 14,
             complete sequence
          Length = 135252

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 65    cattttcaaaaaattcaatg 84
             ||||||||||||||||||||
Sbjct: 22281 cattttcaaaaaattcaatg 22300



to top

>gb|AC166834.2| Mus musculus BAC clone RP23-158D24 from chromosome 7, complete sequence
          Length = 212016

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 103   gggaagaagccttggctgtg 122
             ||||||||||||||||||||
Sbjct: 76915 gggaagaagccttggctgtg 76896


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,145,548
Number of Sequences: 3902068
Number of extensions: 2145548
Number of successful extensions: 50198
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 50138
Number of HSP's gapped (non-prelim): 60
length of query: 277
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 255
effective length of database: 17,147,199,772
effective search space: 4372535941860
effective search space used: 4372535941860
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top