| Clone Name | bags38h01 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X66376.1|HVJASIP H.vulgare mRNA for jasmonate-induced protein Length = 1892 Score = 533 bits (269), Expect = e-149 Identities = 272/273 (99%) Strand = Plus / Plus Query: 1 agtggggtgacttgtccaccgcgctgctcagctggatggacaagcaatacaaggacgatg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 750 agtggggtgacttgtccaccgcgctgctcagctggatggacaagcaatacaaggacgatg 809 Query: 61 caaccattttcaaaaaattcaatggtatcgggataaccaacggggaagaagccttggctg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 810 caaccattttcaaaaaattcaatggtatcgggataaccaacggggaagaagccttggctg 869 Query: 121 tggtgcggcttgtgaagctagtcatccgaagcaacatggcggccgccccgacaaccgacg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 870 tggtgcggcttgtgaagctagtcatccgaagcaacatggcggccgccccgacaaccgacg 929 Query: 181 agcagctgctcgcgtacgctcaactacccaaacacgggcgctacatggcggaggtgttcg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 930 agcagctgctcgcgtacgctcaactacccaaacacgggcgctacatggcggaggtgttcg 989 Query: 241 ccgtgcgcattcccgccaccgccggaggagacc 273 |||||||||| |||||||||||||||||||||| Sbjct: 990 ccgtgcgcatccccgccaccgccggaggagacc 1022
>gb|AY109619.1| Zea mays CL9605_1 mRNA sequence Length = 1251 Score = 139 bits (70), Expect = 5e-30 Identities = 97/106 (91%) Strand = Plus / Minus Query: 172 caaccgacgagcagctgctcgcgtacgctcaactacccaaacacgggcgctacatggcgg 231 ||||||||||||| ||||| ||||||||| | || |||||||| || ||| ||||||||| Sbjct: 1009 caaccgacgagcaactgctggcgtacgctgagctgcccaaacatggccgcgacatggcgg 950 Query: 232 aggtgttcgccgtgcgcattcccgccaccgccggaggagacccgcc 277 ||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 949 aggtgttcgccgtgcgcatccccgccaccgccggaggagacccgcc 904
>gb|BT017846.1| Zea mays clone EL01N0510E02.c mRNA sequence Length = 1034 Score = 91.7 bits (46), Expect = 1e-15 Identities = 91/106 (85%) Strand = Plus / Plus Query: 172 caaccgacgagcagctgctcgcgtacgctcaactacccaaacacgggcgctacatggcgg 231 |||| |||||||| ||||| ||||||||| | || |||| ||| || ||| || || || Sbjct: 9 caactgacgagcaactgctggcgtacgctgagctgcccatacatggccgcgactcggagg 68 Query: 232 aggtgttcgccgtgcgcattcccgccaccgccggaggagacccgcc 277 ||||||||||||||||||| |||||||||||||||||| ||||||| Sbjct: 69 aggtgttcgccgtgcgcatccccgccaccgccggaggaaacccgcc 114
>gb|AC120527.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0011J22 map R10571S, complete sequence Length = 154441 Score = 44.1 bits (22), Expect = 0.23 Identities = 25/26 (96%) Strand = Plus / Minus Query: 223 acatggcggaggtgttcgccgtgcgc 248 ||||||||||||| |||||||||||| Sbjct: 149843 acatggcggaggtcttcgccgtgcgc 149818
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 44.1 bits (22), Expect = 0.23 Identities = 25/26 (96%) Strand = Plus / Plus Query: 223 acatggcggaggtgttcgccgtgcgc 248 ||||||||||||| |||||||||||| Sbjct: 3165142 acatggcggaggtcttcgccgtgcgc 3165167
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 44.1 bits (22), Expect = 0.23 Identities = 25/26 (96%) Strand = Plus / Plus Query: 223 acatggcggaggtgttcgccgtgcgc 248 ||||||||||||| |||||||||||| Sbjct: 3173847 acatggcggaggtcttcgccgtgcgc 3173872
>ref|XM_640149.1| Dictyostelium discoideum hypothetical protein (DDB0203726), partial mRNA Length = 1041 Score = 42.1 bits (21), Expect = 0.91 Identities = 21/21 (100%) Strand = Plus / Plus Query: 63 accattttcaaaaaattcaat 83 ||||||||||||||||||||| Sbjct: 381 accattttcaaaaaattcaat 401
>gb|AC161793.9| Mus musculus chromosome 7, clone RP23-80J7, complete sequence Length = 268158 Score = 42.1 bits (21), Expect = 0.91 Identities = 21/21 (100%) Strand = Plus / Minus Query: 64 ccattttcaaaaaattcaatg 84 ||||||||||||||||||||| Sbjct: 239503 ccattttcaaaaaattcaatg 239483
>gb|AC116963.2| Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence Length = 257109 Score = 42.1 bits (21), Expect = 0.91 Identities = 21/21 (100%) Strand = Plus / Minus Query: 63 accattttcaaaaaattcaat 83 ||||||||||||||||||||| Sbjct: 54408 accattttcaaaaaattcaat 54388
>emb|BX822321.1|CNS0A7SK Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB28ZG10 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 633 Score = 42.1 bits (21), Expect = 0.91 Identities = 21/21 (100%) Strand = Plus / Plus Query: 46 aatacaaggacgatgcaacca 66 ||||||||||||||||||||| Sbjct: 230 aatacaaggacgatgcaacca 250
>gb|AC004863.5|AC004863 Homo sapiens PAC clone RP4-708P22 from 7, complete sequence Length = 133030 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 ccttggctgtggtgcggctt 131 |||||||||||||||||||| Sbjct: 23758 ccttggctgtggtgcggctt 23739
>emb|BX119965.9| Zebrafish DNA sequence from clone RP71-86I6 in linkage group 14, complete sequence Length = 135252 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 cattttcaaaaaattcaatg 84 |||||||||||||||||||| Sbjct: 22281 cattttcaaaaaattcaatg 22300
>gb|AC166834.2| Mus musculus BAC clone RP23-158D24 from chromosome 7, complete sequence Length = 212016 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 103 gggaagaagccttggctgtg 122 |||||||||||||||||||| Sbjct: 76915 gggaagaagccttggctgtg 76896 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,145,548 Number of Sequences: 3902068 Number of extensions: 2145548 Number of successful extensions: 50198 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 50138 Number of HSP's gapped (non-prelim): 60 length of query: 277 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 255 effective length of database: 17,147,199,772 effective search space: 4372535941860 effective search space used: 4372535941860 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)