Clone Information

BLAST Search Result

Clone Name	bags38g03
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ACF_RAT (Q923K9) APOBEC1 complementation factor (APOBEC1-stimula...	44	1e-04
2	ACF_HUMAN (Q9NQ94) APOBEC1 complementation factor (APOBEC1-stimu...	43	3e-04
3	ACF_PONPY (Q5R9H4) APOBEC1 complementation factor (APOBEC1-stimu...	42	3e-04
4	HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (...	41	8e-04
5	HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (...	41	8e-04
6	HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hn...	41	8e-04
7	ACF_MOUSE (Q5YD48) APOBEC1 complementation factor (APOBEC1-stimu...	41	0.001
8	HNRPR_HUMAN (O43390) Heterogeneous nuclear ribonucleoprotein R (...	39	0.004
9	NOP3_YEAST (Q01560) Nucleolar protein 3 (Mitochondrial targeting...	37	0.019
10	PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-bindi...	36	0.024
11	RBM14_PONPY (Q5RC41) RNA-binding protein 14 (RNA-binding motif p...	35	0.071
12	RBM14_MOUSE (Q8C2Q3) RNA-binding protein 14 (RNA-binding motif p...	35	0.071
13	RBM14_HUMAN (Q96PK6) RNA-binding protein 14 (RNA-binding motif p...	35	0.071
14	RBM14_BOVIN (Q5EA36) RNA-binding protein 14 (RNA-binding motif p...	35	0.071
15	RBM4_BRARE (Q6IQ97) RNA-binding protein 4 (RNA-binding motif pro...	34	0.12
16	RAVR2_MOUSE (Q7TPD6) Protein raver-2	33	0.21
17	ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor	32	0.46
18	SART3_PONPY (Q5REG1) Squamous cell carcinoma antigen recognized ...	31	0.78
19	NUCL_MOUSE (P09405) Nucleolin (Protein C23)	31	0.78
20	SART3_HUMAN (Q15020) Squamous cell carcinoma antigen recognized ...	31	0.78
21	ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precur...	31	1.0
22	RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, ch...	31	1.0
23	ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast prec...	31	1.0
24	ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precur...	30	1.7
25	SART3_MOUSE (Q9JLI8) Squamous cell carcinoma antigen recognized ...	30	1.7
26	NUCL_MESAU (P08199) Nucleolin (Protein C23)	30	2.3
27	NUCL_RAT (P13383) Nucleolin (Protein C23)	30	2.3
28	PPIE_DROME (Q9V3G3) Peptidyl-prolyl cis-trans isomerase E (EC 5....	29	3.0
29	ZG14_PONPY (Q5RA17) Gastric cancer antigen Zg14 homolog	29	3.0
30	CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcrip...	29	3.0
31	ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast prec...	29	3.9
32	IF34_CAEEL (Q19706) Probable eukaryotic translation initiation f...	29	3.9
33	GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-indu...	29	3.9
34	PPIE_MOUSE (Q9QZH3) Peptidyl-prolyl cis-trans isomerase E (EC 5....	29	3.9
35	PPIE_HUMAN (Q9UNP9) Peptidyl-prolyl cis-trans isomerase E (EC 5....	29	3.9
36	U2AF2_DROME (Q24562) Splicing factor U2AF 50 kDa subunit (U2 aux...	29	3.9
37	GRP1_SORBI (Q99069) Glycine-rich RNA-binding protein 1 (Fragment)	28	5.1
38	NUCL_MACFA (Q4R4J7) Nucleolin	28	5.1
39	PAP2_HUMAN (Q9BXP8) Pappalysin-2 precursor (EC 3.4.24.-) (Pregna...	28	5.1
40	NUCL_PONPY (Q5RF26) Nucleolin	28	5.1
41	NUCL_HUMAN (P19338) Nucleolin (Protein C23)	28	5.1
42	NUCL_XENLA (P20397) Nucleolin (Protein C23)	28	5.1
43	GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2	28	5.1
44	NONO_MOUSE (Q99K48) Non-POU domain-containing octamer-binding pr...	28	5.1
45	NONO_PONPY (Q5RFL9) Non-POU domain-containing octamer-binding pr...	28	5.1
46	NONO_HUMAN (Q15233) Non-POU domain-containing octamer-binding pr...	28	5.1
47	GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 pro...	28	5.1
48	GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10	28	5.1
49	NONO_RAT (Q5FVM4) Non-POU domain-containing octamer-binding prot...	28	5.1
50	NRD1_SCHPO (Q09702) Negative regulator of differentiation 1 (Mul...	28	6.6
51	UBR1_KLULA (O60014) Ubiquitin-protein ligase E3 component N-reco...	28	6.6
52	ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precur...	28	6.6
53	NUCL_CHICK (P15771) Nucleolin (Protein C23)	28	6.6
54	SFPQ_HUMAN (P23246) Splicing factor, proline- and glutamine-rich...	28	6.6
55	SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich...	28	6.6
56	ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precur...	28	6.6
57	ARS2_CAEEL (Q966L5) Arsenite-resistance protein 2 homolog	28	6.6
58	DGKQ_HUMAN (P52824) Diacylglycerol kinase theta (EC 2.7.1.107) (...	28	8.6
59	ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloro...	28	8.6

>ACF_RAT (Q923K9) APOBEC1 complementation factor (APOBEC1-stimulating|
           protein)
          Length = 594

 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
 Frame = +2

Query: 2   FAFVTFTAKDVAXHAIEELHDKD-HKGRTLRCSLSQAKHRLFVGNVPKGLSEEELTSIIK 178
           +AFVTF+ K  A +AI++L++ +   GR L    S    RLFVG +PK    EE+ S +K
Sbjct: 98  YAFVTFSNKQEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMK 157

Query: 179 GKGPGV 196
               GV
Sbjct: 158 KVTEGV 163

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>ACF_HUMAN (Q9NQ94) APOBEC1 complementation factor (APOBEC1-stimulating|
           protein)
          Length = 594

 Score = 42.7 bits (99), Expect = 3e-04
 Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
 Frame = +2

Query: 2   FAFVTFTAKDVAXHAIEELHDKD-HKGRTLRCSLSQAKHRLFVGNVPKGLSEEELTSIIK 178
           +AFVTF+ K  A +AI++L++ +   GR L    S    RLFVG +PK    EE+ S +K
Sbjct: 98  YAFVTFSNKVEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMK 157

Query: 179 GKGPGV 196
               GV
Sbjct: 158 KVTEGV 163

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>ACF_PONPY (Q5R9H4) APOBEC1 complementation factor (APOBEC1-stimulating|
           protein)
          Length = 587

 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
 Frame = +2

Query: 2   FAFVTFTAKDVAXHAIEELHDKD-HKGRTLRCSLSQAKHRLFVGNVPKGLSEEELTSIIK 178
           +AFVTF+ K  A +AI++L++ +   GR L    S    RLFVG +PK    EE+ S +K
Sbjct: 98  YAFVTFSNKLEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMK 157

Query: 179 GKGPGV 196
               GV
Sbjct: 158 KVTEGV 163

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>HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)|
           (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic
           RNA-interacting protein) (Glycine-and tyrosine-rich
           RNA-binding protein) (GRY-RBP) (NS1-associated protein
           1) (pp68)
          Length = 623

 Score = 41.2 bits (95), Expect = 8e-04
 Identities = 19/55 (34%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
 Frame = +2

Query: 2   FAFVTFTAKDVAXHAIEELHDKD-HKGRTLRCSLSQAKHRLFVGNVPKGLSEEEL 163
           +AFVTF  K+ A  A++  ++ +   G+ +   +S A +RLFVG++PK  ++E++
Sbjct: 205 YAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQI 259

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>HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)|
           (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic
           RNA-interacting protein) (Glycine-and tyrosine-rich
           RNA-binding protein) (GRY-RBP) (NS1-associated protein
           1)
          Length = 623

 Score = 41.2 bits (95), Expect = 8e-04
 Identities = 19/55 (34%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
 Frame = +2

Query: 2   FAFVTFTAKDVAXHAIEELHDKD-HKGRTLRCSLSQAKHRLFVGNVPKGLSEEEL 163
           +AFVTF  K+ A  A++  ++ +   G+ +   +S A +RLFVG++PK  ++E++
Sbjct: 205 YAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQI 259

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>HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)|
           (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic
           RNA-interacting protein) (Liver regeneration-related
           protein LRRG077)
          Length = 533

 Score = 41.2 bits (95), Expect = 8e-04
 Identities = 19/55 (34%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
 Frame = +2

Query: 2   FAFVTFTAKDVAXHAIEELHDKD-HKGRTLRCSLSQAKHRLFVGNVPKGLSEEEL 163
           +AFVTF  K+ A  A++  ++ +   G+ +   +S A +RLFVG++PK  ++E++
Sbjct: 115 YAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQI 169

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>ACF_MOUSE (Q5YD48) APOBEC1 complementation factor (APOBEC1-stimulating|
           protein)
          Length = 595

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
 Frame = +2

Query: 2   FAFVTFTAKDVAXHAIEELHDKDHK-GRTLRCSLSQAKHRLFVGNVPKGLSEEELTSIIK 178
           +AFVTF+ K  A +AI++L++ + + GR L    S    RLF G +PK    EE+ S +K
Sbjct: 98  YAFVTFSNKQEAKNAIKQLNNYEIRTGRLLGVCASVDNCRLFRGGIPKTKKREEILSEMK 157

Query: 179 GKGPGV 196
               GV
Sbjct: 158 KVTEGV 163

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>HNRPR_HUMAN (O43390) Heterogeneous nuclear ribonucleoprotein R (hnRNP R)|
          Length = 633

 Score = 38.9 bits (89), Expect = 0.004
 Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
 Frame = +2

Query: 2   FAFVTFTAKDVAXHAIEELHDKDHK-GRTLRCSLSQAKHRLFVGNVPKGLSEEEL 163
           +AF+TF  K+ A  A++     + + G+ L   +S A +RLFVG++PK  ++E +
Sbjct: 208 YAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENI 262

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>NOP3_YEAST (Q01560) Nucleolar protein 3 (Mitochondrial targeting suppressor 1|
           protein) (Nuclear polyadenylated RNA-binding protein 1)
          Length = 414

 Score = 36.6 bits (83), Expect = 0.019
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
 Frame = +2

Query: 2   FAFVTFTAKDVAXHAIEELHDKDHKGRTLR---CSLSQAKHRLFVGNVPKGLSEEELTSI 172
           FAFV F   + A  AIEE+H K    + L      L   ++R+ + N+P+G S ++L  +
Sbjct: 160 FAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLPAKRYRITMKNLPEGCSWQDLKDL 219

Query: 173 IK 178
            +
Sbjct: 220 AR 221

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>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)|
           (PABP)
          Length = 653

 Score = 36.2 bits (82), Expect = 0.024
 Identities = 15/38 (39%), Positives = 24/38 (63%)
 Frame = +2

Query: 2   FAFVTFTAKDVAXHAIEELHDKDHKGRTLRCSLSQAKH 115
           F FV +   + A  A++EL+DK++KG+ L    +Q KH
Sbjct: 303 FGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKH 340

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>RBM14_PONPY (Q5RC41) RNA-binding protein 14 (RNA-binding motif protein 14)|
          Length = 669

 Score = 34.7 bits (78), Expect = 0.071
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
 Frame = +2

Query: 2   FAFVTFTAKDVAXHAIEELHDKDHK-GRTLRCSLSQAKH----RLFVGNVPKGLSEEELT 166
           FAFV       A  AIE LH  + + GR L   +S+ +     ++FVGNV    + +EL 
Sbjct: 37  FAFVHMRENAGALRAIEALHGHELRPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELR 96

Query: 167 SIIKGKG 187
           S+ + +G
Sbjct: 97  SLFERRG 103

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>RBM14_MOUSE (Q8C2Q3) RNA-binding protein 14 (RNA-binding motif protein 14)|
          Length = 669

 Score = 34.7 bits (78), Expect = 0.071
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
 Frame = +2

Query: 2   FAFVTFTAKDVAXHAIEELHDKDHK-GRTLRCSLSQAKH----RLFVGNVPKGLSEEELT 166
           FAFV       A  AIE LH  + + GR L   +S+ +     ++FVGNV    + +EL 
Sbjct: 37  FAFVHMRENAGAVRAIEALHGHELRPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELR 96

Query: 167 SIIKGKG 187
           S+ + +G
Sbjct: 97  SLFERRG 103

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>RBM14_HUMAN (Q96PK6) RNA-binding protein 14 (RNA-binding motif protein 14)|
           (RRM-containing coactivator activator/modulator)
           (Synaptotagmin-interacting protein) (SYT-interacting
           protein)
          Length = 669

 Score = 34.7 bits (78), Expect = 0.071
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
 Frame = +2

Query: 2   FAFVTFTAKDVAXHAIEELHDKDHK-GRTLRCSLSQAKH----RLFVGNVPKGLSEEELT 166
           FAFV       A  AIE LH  + + GR L   +S+ +     ++FVGNV    + +EL 
Sbjct: 37  FAFVHMRENAGALRAIEALHGHELRPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELR 96

Query: 167 SIIKGKG 187
           S+ + +G
Sbjct: 97  SLFERRG 103

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>RBM14_BOVIN (Q5EA36) RNA-binding protein 14 (RNA-binding motif protein 14)|
          Length = 669

 Score = 34.7 bits (78), Expect = 0.071
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
 Frame = +2

Query: 2   FAFVTFTAKDVAXHAIEELHDKDHK-GRTLRCSLSQAKH----RLFVGNVPKGLSEEELT 166
           FAFV       A  AIE LH  + + GR L   +S+ +     ++FVGNV    + +EL 
Sbjct: 37  FAFVHMRENAGAVRAIEALHGHELRPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELR 96

Query: 167 SIIKGKG 187
           S+ + +G
Sbjct: 97  SLFERRG 103

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>RBM4_BRARE (Q6IQ97) RNA-binding protein 4 (RNA-binding motif protein 4)|
          Length = 419

 Score = 33.9 bits (76), Expect = 0.12
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
 Frame = +2

Query: 2   FAFVTFTAKDVAXHAIEELHDKDHKGRTLRCSLSQAK----HRLFVGNVPKGLSEEELTS 169
           F FV   +K  A  AI+ LH     G  +   +S+ K     +L VGN+    + +EL +
Sbjct: 37  FGFVHMDSKSEADEAIQNLHHYMLNGMAMNVEMSKGKPKTSTKLHVGNISSSCTNQELRA 96

Query: 170 IIKGKGPGV 196
             +  GP V
Sbjct: 97  KFEEYGPVV 105

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>RAVR2_MOUSE (Q7TPD6) Protein raver-2|
          Length = 673

 Score = 33.1 bits (74), Expect = 0.21
 Identities = 18/61 (29%), Positives = 27/61 (44%)
 Frame = +2

Query: 5   AFVTFTAKDVAXHAIEELHDKDHKGRTLRCSLSQAKHRLFVGNVPKGLSEEELTSIIKGK 184
           AFVT    + A  AI+  H    +GR L   L      L + N+P   + EE   +++  
Sbjct: 95  AFVTLLNGEQAQSAIQRFHQFSFRGRELTVQLQPTDALLCITNLPISFTLEEFEELVRAY 154

Query: 185 G 187
           G
Sbjct: 155 G 155

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>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor|
          Length = 315

 Score = 32.0 bits (71), Expect = 0.46
 Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 14/76 (18%)
 Frame = +2

Query: 2   FAFVTFTAKDVAXHAIEELHDKDHKGRTLRCSLS--------------QAKHRLFVGNVP 139
           F FVT +  + A  A+E  +  D  GR L  + +              +  +R++VGN+P
Sbjct: 179 FGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAARRGERPERPPRTFEQSYRIYVGNIP 238

Query: 140 KGLSEEELTSIIKGKG 187
            G+ +  L  +    G
Sbjct: 239 WGIDDARLEQLFSEHG 254

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>SART3_PONPY (Q5REG1) Squamous cell carcinoma antigen recognized by T-cells 3|
           (SART-3)
          Length = 981

 Score = 31.2 bits (69), Expect = 0.78
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 80  RTLRCSLSQAKHRLFVGNVPKGLSEEELTSIIKGKG 187
           +  R S S  KH+LF+  +P   ++EEL  I K  G
Sbjct: 808 KVFRYSTSLEKHKLFISGLPFSCTKEELEEICKAHG 843

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>NUCL_MOUSE (P09405) Nucleolin (Protein C23)|
          Length = 706

 Score = 31.2 bits (69), Expect = 0.78
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
 Frame = +2

Query: 2   FAFVTFTAKDVAXHAIEELHDKDHKGRTLRCSL------SQAKHRLFVGNVPKGLSEEEL 163
           +AF+ F + + A  A+   +  + +GRT+R  L      SQ    LFV  + +  +EE L
Sbjct: 525 YAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGSNSRSQPSKTLFVKGLSEDTTEETL 584

Query: 164 TSIIKG 181
               +G
Sbjct: 585 KESFEG 590

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>SART3_HUMAN (Q15020) Squamous cell carcinoma antigen recognized by T-cells 3|
           (SART-3) (hSART-3) (Tat-interacting protein of 110 kDa)
           (Tip110)
          Length = 963

 Score = 31.2 bits (69), Expect = 0.78
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 80  RTLRCSLSQAKHRLFVGNVPKGLSEEELTSIIKGKG 187
           +  R S S  KH+LF+  +P   ++EEL  I K  G
Sbjct: 790 KVFRYSTSLEKHKLFISGLPFSCTKEELEEICKAHG 825

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>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)|
          Length = 279

 Score = 30.8 bits (68), Expect = 1.0
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +2

Query: 2   FAFVTFTAKDVAXHAIEELHDKDHKGRTLRCSLSQAK 112
           F FVT+++ +   +AIE L   D  GR +R S ++A+
Sbjct: 237 FGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEAR 273

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>RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, chloroplast|
           precursor (PSRP-2)
          Length = 260

 Score = 30.8 bits (68), Expect = 1.0
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = +2

Query: 104 QAKHRLFVGNVPKGLSEEELTSIIKGKG 187
           +   RL+VGN+P+ L+ +EL +I++  G
Sbjct: 81  EGARRLYVGNIPRNLNNDELRTIVEEHG 108

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>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)|
          Length = 273

 Score = 30.8 bits (68), Expect = 1.0
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +2

Query: 2   FAFVTFTAKDVAXHAIEELHDKDHKGRTLRCSLSQAK 112
           F FVT+++ +   +AIE L   D  GR +R S ++A+
Sbjct: 231 FGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEAR 267

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>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)|
          Length = 276

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 14/76 (18%)
 Frame = +2

Query: 2   FAFVTFTAKDVAXHAIEELHDKDHKGRTLRCSLS--------------QAKHRLFVGNVP 139
           F FVT +  + A  A+E     D  GR L  + +              Q  +R++VGN+P
Sbjct: 140 FGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKAAPRGSRPERAPRTFQPTYRIYVGNIP 199

Query: 140 KGLSEEELTSIIKGKG 187
             + +  L  +    G
Sbjct: 200 WDIDDARLEQVFSEHG 215

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>SART3_MOUSE (Q9JLI8) Squamous cell carcinoma antigen recognized by T-cells 3|
           (SART-3) (mSART-3) (Tumor-rejection antigen SART3)
          Length = 962

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 80  RTLRCSLSQAKHRLFVGNVPKGLSEEELTSIIKGKG 187
           +  R S +  KH+LF+  +P   ++EEL  I K  G
Sbjct: 790 KVFRYSTTLEKHKLFISGLPFSCTKEELEDICKAHG 825

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>NUCL_MESAU (P08199) Nucleolin (Protein C23)|
          Length = 713

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 10/70 (14%)
 Frame = +2

Query: 2   FAFVTFTAKDVAXHAIEELHDKDHKGRTLRCSL----------SQAKHRLFVGNVPKGLS 151
           +AF+ F + + A  A+   +  + +GRT+R  L          SQ    LFV  + +  +
Sbjct: 524 YAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRGSPNARSQPSKTLFVKGLSEDTT 583

Query: 152 EEELTSIIKG 181
           EE L    +G
Sbjct: 584 EETLKESFEG 593

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>NUCL_RAT (P13383) Nucleolin (Protein C23)|
          Length = 712

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 10/70 (14%)
 Frame = +2

Query: 2   FAFVTFTAKDVAXHAIEELHDKDHKGRTLRCSL----------SQAKHRLFVGNVPKGLS 151
           +AF+ F + + A  A+   +  + +GRT+R  L          SQ    LFV  + +  +
Sbjct: 527 YAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRGSPNARSQPSKTLFVKGLSEDTT 586

Query: 152 EEELTSIIKG 181
           EE L    +G
Sbjct: 587 EETLKESFEG 596

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>PPIE_DROME (Q9V3G3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase|
           E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33)
          Length = 300

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 12/35 (34%), Positives = 23/35 (65%)
 Frame = +2

Query: 2   FAFVTFTAKDVAXHAIEELHDKDHKGRTLRCSLSQ 106
           FAF+ +   + A  AI+ ++D +  GRT+R +L++
Sbjct: 49  FAFIEYEQSEDAAAAIDNMNDSELCGRTIRVNLAK 83

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>ZG14_PONPY (Q5RA17) Gastric cancer antigen Zg14 homolog|
          Length = 280

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 20/60 (33%), Positives = 28/60 (46%)
 Frame = +2

Query: 11  VTFTAKDVAXHAIEELHDKDHKGRTLRCSLSQAKHRLFVGNVPKGLSEEELTSIIKGKGP 190
           + F+ K  A H    L+ + H  R    S    K  LFV NVP   +EE L+ ++   GP
Sbjct: 28  IKFSEKQQASHY---LYVRAHSVRQGTKSTWPQKRTLFVLNVPPYCTEESLSRLLSSCGP 84

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>CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcription|
           termination factor ctf1)
          Length = 363

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 119 LFVGNVPKGLSEEELTSIIKGKGP 190
           +FVGN+P  +SE+++T I    GP
Sbjct: 9   VFVGNIPYDVSEQQMTEIFNQVGP 32

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>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)|
          Length = 291

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +2

Query: 2   FAFVTFTAKDVAXHAIEELHDKDHKGRTLRCSLSQAKHR 118
           F FVT+++      AI+ L+  D  GR++R S ++ + R
Sbjct: 250 FGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEERPR 288

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>IF34_CAEEL (Q19706) Probable eukaryotic translation initiation factor 3|
           subunit 4 (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding
           subunit) (eIF3g)
          Length = 256

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = +2

Query: 2   FAFVTFTAKDVAXHAIEELHD 64
           FAFVTF ++D A  AI EL+D
Sbjct: 219 FAFVTFESRDDAARAIAELND 239

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>GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-inducible protein|
          Length = 157

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = +2

Query: 2   FAFVTFTAKDVAXHAIEELHDKDHKGRTLRCSLSQAK 112
           F FVTF++++    AIE ++ K+  GR +  + +Q++
Sbjct: 51  FGFVTFSSENSMLDAIENMNGKELDGRNITVNQAQSR 87

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>PPIE_MOUSE (Q9QZH3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase|
           E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33)
          Length = 301

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +2

Query: 2   FAFVTFTAKDVAXHAIEELHDKDHKGRTLRCSLSQ 106
           FAFV F   + A  AI+ +++ +  GRT+R +L++
Sbjct: 49  FAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 83

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>PPIE_HUMAN (Q9UNP9) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase|
           E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33)
          Length = 301

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +2

Query: 2   FAFVTFTAKDVAXHAIEELHDKDHKGRTLRCSLSQ 106
           FAFV F   + A  AI+ +++ +  GRT+R +L++
Sbjct: 49  FAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 83

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>U2AF2_DROME (Q24562) Splicing factor U2AF 50 kDa subunit (U2 auxiliary factor|
           50 kDa subunit) (U2 snRNP auxiliary factor large
           subunit)
          Length = 416

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 10/23 (43%), Positives = 19/23 (82%)
 Frame = +2

Query: 95  SLSQAKHRLFVGNVPKGLSEEEL 163
           ++++   RL+VGN+P G++EEE+
Sbjct: 87  TITRQARRLYVGNIPFGVTEEEM 109

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>GRP1_SORBI (Q99069) Glycine-rich RNA-binding protein 1 (Fragment)|
          Length = 142

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +2

Query: 2   FAFVTFTAKDVAXHAIEELHDKDHKGRTLRCSLSQAK 112
           F FVTF+ ++    AIE ++ K+  GR +  + +Q++
Sbjct: 30  FGFVTFSTEEAMRSAIEGMNGKELDGRNITVNEAQSR 66

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>NUCL_MACFA (Q4R4J7) Nucleolin|
          Length = 710

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 10/69 (14%)
 Frame = +2

Query: 2   FAFVTFTAKDVAXHAIEELHDKDHKGRTLRCSL----------SQAKHRLFVGNVPKGLS 151
           +AF+ F + + A  A+   + ++ +GR +R  L          SQ    LFV    KGLS
Sbjct: 525 YAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFV----KGLS 580

Query: 152 EEELTSIIK 178
           E+     +K
Sbjct: 581 EDTTEETLK 589

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>PAP2_HUMAN (Q9BXP8) Pappalysin-2 precursor (EC 3.4.24.-) (Pregnancy-associated|
           plasma protein-A2) (PAPP-A2) (Pregnancy-associated
           plasma protein-E1) (PAPP-E)
          Length = 1791

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +3

Query: 54  NCMTRTTRGEHCDAHCPRPSTGY 122
           NC       +HCD  C  P TGY
Sbjct: 585 NCEPSKIGNDHCDPECEHPLTGY 607

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>NUCL_PONPY (Q5RF26) Nucleolin|
          Length = 711

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 10/69 (14%)
 Frame = +2

Query: 2   FAFVTFTAKDVAXHAIEELHDKDHKGRTLRCSL----------SQAKHRLFVGNVPKGLS 151
           +AF+ F + + A  A+   + ++ +GR +R  L          SQ    LFV    KGLS
Sbjct: 526 YAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFV----KGLS 581

Query: 152 EEELTSIIK 178
           E+     +K
Sbjct: 582 EDTTEETLK 590

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>NUCL_HUMAN (P19338) Nucleolin (Protein C23)|
          Length = 709

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 10/69 (14%)
 Frame = +2

Query: 2   FAFVTFTAKDVAXHAIEELHDKDHKGRTLRCSL----------SQAKHRLFVGNVPKGLS 151
           +AF+ F + + A  A+   + ++ +GR +R  L          SQ    LFV    KGLS
Sbjct: 524 YAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFV----KGLS 579

Query: 152 EEELTSIIK 178
           E+     +K
Sbjct: 580 EDTTEETLK 588

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>NUCL_XENLA (P20397) Nucleolin (Protein C23)|
          Length = 650

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 13/73 (17%)
 Frame = +2

Query: 2   FAFVTFTAKDVAXHAIEELHDKDHKGRTLRCSLSQA-------------KHRLFVGNVPK 142
           FAF+ F++ + A  A++  ++ + +GR++R   SQ                 LFV  + +
Sbjct: 452 FAFIEFSSAEDAKDAMDSCNNTEIEGRSIRLEFSQGGGPQGGGRGGSAQSKTLFVRGLSE 511

Query: 143 GLSEEELTSIIKG 181
             +EE L     G
Sbjct: 512 DTTEETLKEAFDG 524

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>GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2|
          Length = 168

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +2

Query: 2   FAFVTFTAKDVAXHAIEELHDKDHKGRTLRCSLSQAK 112
           F FVTF+++     AIE ++ K+  GR +  + +Q++
Sbjct: 51  FGFVTFSSEQSMLDAIENMNGKELDGRNITVNQAQSR 87

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>NONO_MOUSE (Q99K48) Non-POU domain-containing octamer-binding protein (NonO|
           protein)
          Length = 473

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 110 KHRLFVGNVPKGLSEEELTSIIKGKG 187
           + RLFVGN+P  ++EEE+  + +  G
Sbjct: 75  RSRLFVGNLPPDITEEEMRKLFEKYG 100

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>NONO_PONPY (Q5RFL9) Non-POU domain-containing octamer-binding protein (NonO|
           protein)
          Length = 471

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 110 KHRLFVGNVPKGLSEEELTSIIKGKG 187
           + RLFVGN+P  ++EEE+  + +  G
Sbjct: 73  RSRLFVGNLPPDITEEEMRKLFEKYG 98

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>NONO_HUMAN (Q15233) Non-POU domain-containing octamer-binding protein (NonO|
           protein) (54 kDa nuclear RNA- and DNA-binding protein)
           (p54(nrb)) (p54nrb) (55 kDa nuclear protein) (NMT55)
           (DNA-binding p52/p100 complex, 52 kDa subunit)
          Length = 471

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 110 KHRLFVGNVPKGLSEEELTSIIKGKG 187
           + RLFVGN+P  ++EEE+  + +  G
Sbjct: 73  RSRLFVGNLPPDITEEEMRKLFEKYG 98

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>GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 protein)|
          Length = 169

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +2

Query: 2   FAFVTFTAKDVAXHAIEELHDKDHKGRTLRCSLSQAK 112
           F FVTF  +     AIEE++ K+  GR +  + +Q++
Sbjct: 49  FGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQSR 85

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>GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10|
          Length = 169

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +2

Query: 2   FAFVTFTAKDVAXHAIEELHDKDHKGRTLRCSLSQAK 112
           F FVTF  +     AI+E++ K+  GRT+  + +Q++
Sbjct: 49  FGFVTFKDEKSMKDAIDEMNGKELDGRTITVNEAQSR 85

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>NONO_RAT (Q5FVM4) Non-POU domain-containing octamer-binding protein (NonO|
           protein)
          Length = 476

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 110 KHRLFVGNVPKGLSEEELTSIIKGKG 187
           + RLFVGN+P  ++EEE+  + +  G
Sbjct: 78  RSRLFVGNLPPDITEEEMRKLFEKYG 103

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>NRD1_SCHPO (Q09702) Negative regulator of differentiation 1 (Multicopy|
           suppressor of sporulation protein msa2)
          Length = 529

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +2

Query: 101 SQAKHRLFVGNVPKGLSEEELTSIIKGKGP 190
           S A   +F+GN+P G++E+E+   ++  GP
Sbjct: 202 SGACRNVFLGNLPNGITEDEIREDLEPFGP 231

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>UBR1_KLULA (O60014) Ubiquitin-protein ligase E3 component N-recognin-1 (EC|
           6.-.-.-) (N-end-recognizing protein)
          Length = 1945

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +2

Query: 65  KDHKGRTLRCSLSQAKHRLFVGNVPKGLSEEELTSIIKG 181
           + H GRTL C  S+ + +   G+  + + ++EL S I G
Sbjct: 12  RQHVGRTLGCIHSRPEFKDIKGSAERAVMDKELKSFIYG 50

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>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)|
          Length = 292

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +2

Query: 2   FAFVTFTAKDVAXHAIEELHDKDHKGRTLRCSLSQAKHR 118
           F FVT+++      AI+ L+  D  GR++R S ++ + R
Sbjct: 251 FGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAEERPR 289

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>NUCL_CHICK (P15771) Nucleolin (Protein C23)|
          Length = 694

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 14/60 (23%), Positives = 28/60 (46%)
 Frame = +2

Query: 2   FAFVTFTAKDVAXHAIEELHDKDHKGRTLRCSLSQAKHRLFVGNVPKGLSEEELTSIIKG 181
           +AFV F   + A  A+   ++ + +GR +R   S    +    N   G +++  T  ++G
Sbjct: 500 YAFVEFPTAEDAKEALNSCNNTEIEGRAIRLEFSSPSWQKGNMNARGGFNQQSKTLFVRG 559

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>SFPQ_HUMAN (P23246) Splicing factor, proline- and glutamine-rich|
           (Polypyrimidine tract-binding protein-associated
           splicing factor) (PTB-associated splicing factor) (PSF)
           (DNA-binding p52/p100 complex, 100 kDa subunit) (100-kDa
           DNA-pairing protein) (hPOMp
          Length = 707

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 19/63 (30%), Positives = 27/63 (42%)
 Frame = +2

Query: 2   FAFVTFTAKDVAXHAIEELHDKDHKGRTLRCSLSQAKHRLFVGNVPKGLSEEELTSIIKG 181
           F F+   ++ +A  A  EL D   +GR LR   +     L V N+   +S E L      
Sbjct: 334 FGFIKLESRALAEIAKAELDDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQ 393

Query: 182 KGP 190
            GP
Sbjct: 394 FGP 396

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>SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich|
           (Polypyrimidine tract-binding protein-associated
           splicing factor) (PTB-associated splicing factor) (PSF)
           (DNA-binding p52/p100 complex, 100 kDa subunit)
          Length = 699

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 19/63 (30%), Positives = 27/63 (42%)
 Frame = +2

Query: 2   FAFVTFTAKDVAXHAIEELHDKDHKGRTLRCSLSQAKHRLFVGNVPKGLSEEELTSIIKG 181
           F F+   ++ +A  A  EL D   +GR LR   +     L V N+   +S E L      
Sbjct: 326 FGFIKLESRALAEIAKAELDDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQ 385

Query: 182 KGP 190
            GP
Sbjct: 386 FGP 388

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>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor|
           (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3)
           (AtRBP33) (RNA-binding protein cp31)
          Length = 329

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 14/76 (18%)
 Frame = +2

Query: 2   FAFVTFTAKDVAXHAIEELHDKDHKGRTLRCS--------------LSQAKHRLFVGNVP 139
           F FVT ++ D A  A+E+ +  D  GR L  +              + +   R++VGN+P
Sbjct: 193 FGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLP 252

Query: 140 KGLSEEELTSIIKGKG 187
             +    L  +    G
Sbjct: 253 WDVDNGRLEQLFSEHG 268

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>ARS2_CAEEL (Q966L5) Arsenite-resistance protein 2 homolog|
          Length = 712

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = +2

Query: 44  AIEELHDKDHKGRTLRCSLSQAKHR---LFVGNVPKGLSEEELTSIIKGKGPG 193
           A EEL +   +  T + S     HR   +F+ N+P GL+ EEL  + K K PG
Sbjct: 240 ATEELEEGAIEDGTEKSSNKVNIHRTCSVFLRNIPPGLTYEELEGLCK-KSPG 291

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>DGKQ_HUMAN (P52824) Diacylglycerol kinase theta (EC 2.7.1.107) (Diglyceride|
           kinase theta) (DGK-theta) (DAG kinase theta)
          Length = 942

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +2

Query: 119 LFVGNVPKGLSEEELTSIIKGKG 187
           LFVG +P GLS EE +S++   G
Sbjct: 501 LFVGGLPPGLSPEEYSSLLHEAG 523

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>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast|
           precursor
          Length = 289

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 2   FAFVTFTAKDVAXHAIEELHDKDHKGRTLRCSLSQAK 112
           F FVT+ +     +AI+ L   D  GR +R S ++A+
Sbjct: 247 FGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEAR 283


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,093,446
Number of Sequences: 219361
Number of extensions: 459366
Number of successful extensions: 1662
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 1577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1652
length of database: 80,573,946
effective HSP length: 41
effective length of database: 71,580,145
effective search space used: 1717923480
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result