ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags38g03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_194876.1| Oryza sativa (japonica cultivar-group) putative... 174 7e-41
2dbj|AK066347.1| Oryza sativa (japonica cultivar-group) cDNA clon... 174 7e-41
3gb|AC098565.3| Oryza sativa chromosome 10 clone OSJNBa0028C16, c... 137 1e-29
4dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 137 1e-29
5gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 137 1e-29
6gb|AC146948.2| Oryza sativa (japonica cultivar-group) chromosome... 121 9e-25
7dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 121 9e-25
8gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 121 9e-25
9gb|AY104865.1| Zea mays PCO099871 mRNA sequence 70 3e-09
10gb|BT018606.1| Zea mays clone EL01N0450E05.d mRNA sequence 60 3e-06
11gb|AF531761.1|AF531756S6 Rattus norvegicus myoneurin (Mynn) gene... 42 0.63
12ref|XM_574915.1| PREDICTED: Rattus norvegicus similar to Myoneur... 42 0.63
13gb|BC089853.1| Rattus norvegicus myoneurin, mRNA (cDNA clone MGC... 42 0.63
14ref|NM_001012178.1| Rattus norvegicus myoneurin (Mynn), mRNA 42 0.63
15gb|AC016884.10| Homo sapiens chromosome , clone RP11-350M7, comp... 40 2.5
16gb|AC121108.12| Mus musculus chromosome 3, clone RP24-417H10, co... 40 2.5
17gb|AE015925.1| Chlamydophila caviae GPIC, complete genome 40 2.5
18gb|AC126403.7| Mus musculus chromosome 15, clone RP24-483E7, com... 38 9.9
19ref|XM_415728.1| PREDICTED: Gallus gallus similar to Williams Be... 38 9.9
20gb|AC147642.2| Mus musculus BAC clone RP23-27D6 from chromosome ... 38 9.9
21gb|AC125193.3| Mus musculus BAC clone RP23-268I12 from chromosom... 38 9.9
22gb|AC161111.2| Mus musculus chromosome 15, clone RP23-50B6, comp... 38 9.9
23ref|XM_804784.1| Trypanosoma cruzi strain CL Brener trans-splici... 38 9.9
24ref|XM_854212.1| PREDICTED: Canis familiaris similar to dynactin... 38 9.9
25gb|U13876.3| Caenorhabditis elegans cosmid F57B9, complete sequence 38 9.9
26gb|BC113119.1| Homo sapiens exophilin 5, mRNA (cDNA clone MGC:13... 38 9.9
27emb|CR627226.1| Homo sapiens mRNA; cDNA DKFZp781H0795 (from clon... 38 9.9
28ref|NM_015065.1| Homo sapiens exophilin 5 (EXPH5), mRNA 38 9.9
29gb|AY099469.1| Homo sapiens exophilin 5 mRNA, complete cds 38 9.9
30gb|AC008449.6| Homo sapiens chromosome 5 clone CTC-341A9, comple... 38 9.9
31gb|AC019216.9|AC019216 Homo sapiens BAC clone RP11-484N11 from 4... 38 9.9
32gb|AC011286.7| Homo sapiens BAC clone RP11-4H21 from 2, complete... 38 9.9
33dbj|AP000871.7| Homo sapiens genomic DNA, chromosome 11 clone:RP... 38 9.9
34gb|AC118735.8| Mus musculus chromosome 7, clone RP24-170M16, com... 38 9.9
35emb|AJ512175.1|SAM512175 Sphaeralcea ambigua external transcribe... 38 9.9
36gb|AC149592.2| Mus musculus BAC clone RP23-270M4 from 14, comple... 38 9.9
37dbj|AP006630.1| Lotus japonicus genomic DNA, chromosome 2, clone... 38 9.9
38dbj|AB014524.1| Homo sapiens mRNA for KIAA0624 protein, partial cds 38 9.9
39emb|AL773550.4| Mouse DNA sequence from clone RP23-433P3 on chro... 38 9.9 
>ref|NM_194876.1| Oryza sativa (japonica cultivar-group) putative RNA-binding protein
           (OSJNBa0028C16.8), mRNA
          Length = 1419

 Score =  174 bits (88), Expect = 7e-41
 Identities = 150/171 (87%)
 Strand = Plus / Plus

                                                                       
Query: 25  caaggatgtggctcancatgccattgaagaactgcatgacaaggaccacaaggggagaac 84
           |||||||| |||||| | ||| ||||| || ||||||||||| || ||||||||||| ||
Sbjct: 477 caaggatggggctcagcgtgctattgaggatctgcatgacaaagaacacaaggggaggac 536

                                                                       
Query: 85  actgcgatgctcattgtcccaggccaagcacaggttatttgttggcaatgtacccaaagg 144
           |||||| ||||||||||| ||||| ||||||||| |||||||||||||||||||||| ||
Sbjct: 537 actgcggtgctcattgtcacaggcaaagcacaggctatttgttggcaatgtacccaaggg 596

                                                              
Query: 145 gttgagtgaggaggagctgacgagcataatcaaagggaaggggccaggtgt 195
           |||||||||||| |||||||  | ||||||| | |||||||| ||||||||
Sbjct: 597 gttgagtgaggacgagctgagaaacataatccaggggaagggcccaggtgt 647
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>dbj|AK066347.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013065B13, full
           insert sequence
          Length = 3637

 Score =  174 bits (88), Expect = 7e-41
 Identities = 150/171 (87%)
 Strand = Plus / Plus

                                                                       
Query: 25  caaggatgtggctcancatgccattgaagaactgcatgacaaggaccacaaggggagaac 84
           |||||||| |||||| | ||| ||||| || ||||||||||| || ||||||||||| ||
Sbjct: 742 caaggatggggctcagcgtgctattgaggatctgcatgacaaagaacacaaggggaggac 801

                                                                       
Query: 85  actgcgatgctcattgtcccaggccaagcacaggttatttgttggcaatgtacccaaagg 144
           |||||| ||||||||||| ||||| ||||||||| |||||||||||||||||||||| ||
Sbjct: 802 actgcggtgctcattgtcacaggcaaagcacaggctatttgttggcaatgtacccaaggg 861

                                                              
Query: 145 gttgagtgaggaggagctgacgagcataatcaaagggaaggggccaggtgt 195
           |||||||||||| |||||||  | ||||||| | |||||||| ||||||||
Sbjct: 862 gttgagtgaggacgagctgagaaacataatccaggggaagggcccaggtgt 912
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>gb|AC098565.3| Oryza sativa chromosome 10 clone OSJNBa0028C16, complete sequence
          Length = 166757

 Score =  137 bits (69), Expect = 1e-29
 Identities = 108/121 (89%)
 Strand = Plus / Minus

                                                                         
Query: 75    aggggagaacactgcgatgctcattgtcccaggccaagcacaggttatttgttggcaatg 134
             ||||||| |||||||| ||||||||||| ||||| ||||||||| |||||||||||||||
Sbjct: 66390 aggggaggacactgcggtgctcattgtcacaggcaaagcacaggctatttgttggcaatg 66331

                                                                         
Query: 135   tacccaaagggttgagtgaggaggagctgacgagcataatcaaagggaaggggccaggtg 194
             ||||||| |||||||||||||| |||||||  | ||||||| | |||||||| |||||||
Sbjct: 66330 tacccaaggggttgagtgaggacgagctgagaaacataatccaggggaagggcccaggtg 66271

              
Query: 195   t 195
             |
Sbjct: 66270 t 66270



 Score = 44.1 bits (22), Expect = 0.16
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                  
Query: 25    caaggatgtggctcancatgccattgaagaactgcatgacaaggaccacaagg 77
             |||||||| |||||| | ||| ||||| || ||||||||||| || |||||||
Sbjct: 66526 caaggatggggctcagcgtgctattgaggatctgcatgacaaagaacacaagg 66474
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score =  137 bits (69), Expect = 1e-29
 Identities = 108/121 (89%)
 Strand = Plus / Minus

                                                                           
Query: 75      aggggagaacactgcgatgctcattgtcccaggccaagcacaggttatttgttggcaatg 134
               ||||||| |||||||| ||||||||||| ||||| ||||||||| |||||||||||||||
Sbjct: 3096758 aggggaggacactgcggtgctcattgtcacaggcaaagcacaggctatttgttggcaatg 3096699

                                                                           
Query: 135     tacccaaagggttgagtgaggaggagctgacgagcataatcaaagggaaggggccaggtg 194
               ||||||| |||||||||||||| |||||||  | ||||||| | |||||||| |||||||
Sbjct: 3096698 tacccaaggggttgagtgaggacgagctgagaaacataatccaggggaagggcccaggtg 3096639

                
Query: 195     t 195
               |
Sbjct: 3096638 t 3096638



 Score = 44.1 bits (22), Expect = 0.16
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                    
Query: 25      caaggatgtggctcancatgccattgaagaactgcatgacaaggaccacaagg 77
               |||||||| |||||| | ||| ||||| || ||||||||||| || |||||||
Sbjct: 3096894 caaggatggggctcagcgtgctattgaggatctgcatgacaaagaacacaagg 3096842
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  137 bits (69), Expect = 1e-29
 Identities = 108/121 (89%)
 Strand = Plus / Minus

                                                                           
Query: 75      aggggagaacactgcgatgctcattgtcccaggccaagcacaggttatttgttggcaatg 134
               ||||||| |||||||| ||||||||||| ||||| ||||||||| |||||||||||||||
Sbjct: 3096679 aggggaggacactgcggtgctcattgtcacaggcaaagcacaggctatttgttggcaatg 3096620

                                                                           
Query: 135     tacccaaagggttgagtgaggaggagctgacgagcataatcaaagggaaggggccaggtg 194
               ||||||| |||||||||||||| |||||||  | ||||||| | |||||||| |||||||
Sbjct: 3096619 tacccaaggggttgagtgaggacgagctgagaaacataatccaggggaagggcccaggtg 3096560

                
Query: 195     t 195
               |
Sbjct: 3096559 t 3096559



 Score = 44.1 bits (22), Expect = 0.16
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                    
Query: 25      caaggatgtggctcancatgccattgaagaactgcatgacaaggaccacaagg 77
               |||||||| |||||| | ||| ||||| || ||||||||||| || |||||||
Sbjct: 3096815 caaggatggggctcagcgtgctattgaggatctgcatgacaaagaacacaagg 3096763
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>gb|AC146948.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone P0782F03 map
              near S2137, complete sequence
          Length = 197516

 Score =  121 bits (61), Expect = 9e-25
 Identities = 106/121 (87%)
 Strand = Plus / Minus

                                                                          
Query: 75     aggggagaacactgcgatgctcattgtcccaggccaagcacaggttatttgttggcaatg 134
              ||||||| |||||||| |||||| |||| ||||| ||||||||| |||| ||||| ||||
Sbjct: 104495 aggggaggacactgcggtgctcactgtcgcaggcaaagcacaggctattcgttggtaatg 104436

                                                                          
Query: 135    tacccaaagggttgagtgaggaggagctgacgagcataatcaaagggaaggggccaggtg 194
              ||||||| |||||| |||||||||||||||  |  |||||| ||||||||||||||||||
Sbjct: 104435 tacccaaggggttgggtgaggaggagctgagaaagataatccaagggaaggggccaggtg 104376

               
Query: 195    t 195
              |
Sbjct: 104375 t 104375
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score =  121 bits (61), Expect = 9e-25
 Identities = 106/121 (87%)
 Strand = Plus / Minus

                                                                           
Query: 75      aggggagaacactgcgatgctcattgtcccaggccaagcacaggttatttgttggcaatg 134
               ||||||| |||||||| |||||| |||| ||||| ||||||||| |||| ||||| ||||
Sbjct: 8023767 aggggaggacactgcggtgctcactgtcgcaggcaaagcacaggctattcgttggtaatg 8023708

                                                                           
Query: 135     tacccaaagggttgagtgaggaggagctgacgagcataatcaaagggaaggggccaggtg 194
               ||||||| |||||| |||||||||||||||  |  |||||| ||||||||||||||||||
Sbjct: 8023707 tacccaaggggttgggtgaggaggagctgagaaagataatccaagggaaggggccaggtg 8023648

                
Query: 195     t 195
               |
Sbjct: 8023647 t 8023647
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  121 bits (61), Expect = 9e-25
 Identities = 106/121 (87%)
 Strand = Plus / Minus

                                                                           
Query: 75      aggggagaacactgcgatgctcattgtcccaggccaagcacaggttatttgttggcaatg 134
               ||||||| |||||||| |||||| |||| ||||| ||||||||| |||| ||||| ||||
Sbjct: 8093706 aggggaggacactgcggtgctcactgtcgcaggcaaagcacaggctattcgttggtaatg 8093647

                                                                           
Query: 135     tacccaaagggttgagtgaggaggagctgacgagcataatcaaagggaaggggccaggtg 194
               ||||||| |||||| |||||||||||||||  |  |||||| ||||||||||||||||||
Sbjct: 8093646 tacccaaggggttgggtgaggaggagctgagaaagataatccaagggaaggggccaggtg 8093587

                
Query: 195     t 195
               |
Sbjct: 8093586 t 8093586
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>gb|AY104865.1| Zea mays PCO099871 mRNA sequence
          Length = 1968

 Score = 69.9 bits (35), Expect = 3e-09
 Identities = 101/123 (82%)
 Strand = Plus / Plus

                                                                       
Query: 73  caaggggagaacactgcgatgctcattgtcccaggccaagcacaggttatttgttggcaa 132
           ||||||||| ||  |||| |||||  |||| ||||| ||||||||| | |||||||| ||
Sbjct: 743 caaggggaggactttgcggtgctctctgtcgcaggcaaagcacaggctgtttgttgggaa 802

                                                                       
Query: 133 tgtacccaaagggttgagtgaggaggagctgacgagcataatcaaagggaaggggccagg 192
           ||| ||||| ||| |||| ||||||||||| || | ||  ||||| |||||||| |||||
Sbjct: 803 tgtgcccaaggggctgagcgaggaggagcttaccaacactatcaaggggaagggtccagg 862

              
Query: 193 tgt 195
           |||
Sbjct: 863 tgt 865
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>gb|BT018606.1| Zea mays clone EL01N0450E05.d mRNA sequence
          Length = 1806

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 75/90 (83%)
 Strand = Plus / Plus

                                                                       
Query: 73  caaggggagaacactgcgatgctcattgtcccaggccaagcacaggttatttgttggcaa 132
           ||||||||| ||  |||| |||||  |||| ||||| ||||||||| | |||||||| ||
Sbjct: 582 caaggggaggactttgcggtgctctctgtcgcaggcaaagcacaggctgtttgttgggaa 641

                                         
Query: 133 tgtacccaaagggttgagtgaggaggagct 162
           ||| ||||| ||| |||| |||||||||||
Sbjct: 642 tgtgcccaaggggctgagcgaggaggagct 671
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>gb|AF531761.1|AF531756S6 Rattus norvegicus myoneurin (Mynn) gene, intron 6, exon 7 and
           partial cds
          Length = 359

 Score = 42.1 bits (21), Expect = 0.63
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 12  ttacatttactgccaaggatg 32
           |||||||||||||||||||||
Sbjct: 356 ttacatttactgccaaggatg 336
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>ref|XM_574915.1| PREDICTED: Rattus norvegicus similar to Myoneurin (LOC499590), mRNA
          Length = 2044

 Score = 42.1 bits (21), Expect = 0.63
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 12   ttacatttactgccaaggatg 32
            |||||||||||||||||||||
Sbjct: 1938 ttacatttactgccaaggatg 1918
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>gb|BC089853.1| Rattus norvegicus myoneurin, mRNA (cDNA clone MGC:108895
            IMAGE:7379696), complete cds
          Length = 2350

 Score = 42.1 bits (21), Expect = 0.63
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 12   ttacatttactgccaaggatg 32
            |||||||||||||||||||||
Sbjct: 1740 ttacatttactgccaaggatg 1720
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>ref|NM_001012178.1| Rattus norvegicus myoneurin (Mynn), mRNA
          Length = 2350

 Score = 42.1 bits (21), Expect = 0.63
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 12   ttacatttactgccaaggatg 32
            |||||||||||||||||||||
Sbjct: 1740 ttacatttactgccaaggatg 1720
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>gb|AC016884.10| Homo sapiens chromosome , clone RP11-350M7, complete sequence
          Length = 209320

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                         
Query: 36     ctcancatgccattgaagaactgcatg 62
              |||| || |||||||||||||||||||
Sbjct: 186269 ctcaacaagccattgaagaactgcatg 186295
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>gb|AC121108.12| Mus musculus chromosome 3, clone RP24-417H10, complete sequence
          Length = 184753

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 151   tgaggaggagctgacgagca 170
             ||||||||||||||||||||
Sbjct: 96823 tgaggaggagctgacgagca 96842
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>gb|AE015925.1| Chlamydophila caviae GPIC, complete genome
          Length = 1173390

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 123    ttgttggcaatgtacccaaa 142
              ||||||||||||||||||||
Sbjct: 249801 ttgttggcaatgtacccaaa 249782
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>gb|AC126403.7| Mus musculus chromosome 15, clone RP24-483E7, complete sequence
          Length = 152384

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 169    cataatcaaagggaagggg 187
              |||||||||||||||||||
Sbjct: 116150 cataatcaaagggaagggg 116132
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>ref|XM_415728.1| PREDICTED: Gallus gallus similar to Williams Beuren syndrome
            chromosome region 17; polypeptide
            N-acetylgalactosaminyltransferase WBSCR17 (LOC417480),
            mRNA
          Length = 5102

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 71   cacaaggggagaacactgc 89
            |||||||||||||||||||
Sbjct: 2329 cacaaggggagaacactgc 2347
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>gb|AC147642.2| Mus musculus BAC clone RP23-27D6 from chromosome 14, complete sequence
          Length = 212100

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 124   tgttggcaatgtacccaaagggt 146
             |||| ||||||||||||||||||
Sbjct: 82051 tgtttgcaatgtacccaaagggt 82073
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>gb|AC125193.3| Mus musculus BAC clone RP23-268I12 from chromosome 14, complete
            sequence
          Length = 167771

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 124  tgttggcaatgtacccaaagggt 146
            |||| ||||||||||||||||||
Sbjct: 3947 tgtttgcaatgtacccaaagggt 3969
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>gb|AC161111.2| Mus musculus chromosome 15, clone RP23-50B6, complete sequence
          Length = 200074

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 169   cataatcaaagggaagggg 187
             |||||||||||||||||||
Sbjct: 56604 cataatcaaagggaagggg 56586
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>ref|XM_804784.1| Trypanosoma cruzi strain CL Brener trans-splicing factor
           (Tc00.1047053504625.10) partial mRNA
          Length = 1065

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 145 gttgagtgaggaggagctg 163
           |||||||||||||||||||
Sbjct: 534 gttgagtgaggaggagctg 552
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>ref|XM_854212.1| PREDICTED: Canis familiaris similar to dynactin 2, transcript
           variant 9 (LOC474415), mRNA
          Length = 1674

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 152 gaggaggagctgacgagca 170
           |||||||||||||||||||
Sbjct: 200 gaggaggagctgacgagca 218
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>gb|U13876.3| Caenorhabditis elegans cosmid F57B9, complete sequence
          Length = 39112

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 142  agggttgagtgaggaggag 160
            |||||||||||||||||||
Sbjct: 4826 agggttgagtgaggaggag 4844
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>gb|BC113119.1| Homo sapiens exophilin 5, mRNA (cDNA clone MGC:133291
            IMAGE:40037748), complete cds
          Length = 6133

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 20   actgccaaggatgtggctc 38
            |||||||||||||||||||
Sbjct: 1739 actgccaaggatgtggctc 1721
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>emb|CR627226.1| Homo sapiens mRNA; cDNA DKFZp781H0795 (from clone DKFZp781H0795)
          Length = 5512

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 20   actgccaaggatgtggctc 38
            |||||||||||||||||||
Sbjct: 1730 actgccaaggatgtggctc 1712
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>ref|NM_015065.1| Homo sapiens exophilin 5 (EXPH5), mRNA
          Length = 6655

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 20   actgccaaggatgtggctc 38
            |||||||||||||||||||
Sbjct: 1754 actgccaaggatgtggctc 1736
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>gb|AY099469.1| Homo sapiens exophilin 5 mRNA, complete cds
          Length = 6655

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 20   actgccaaggatgtggctc 38
            |||||||||||||||||||
Sbjct: 1754 actgccaaggatgtggctc 1736
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>gb|AC008449.6| Homo sapiens chromosome 5 clone CTC-341A9, complete sequence
          Length = 124405

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 135   tacccaaagggttgagtga 153
             |||||||||||||||||||
Sbjct: 50222 tacccaaagggttgagtga 50240
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>gb|AC019216.9|AC019216 Homo sapiens BAC clone RP11-484N11 from 4, complete sequence
          Length = 160858

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 120   tatttgttggcaatgtacc 138
             |||||||||||||||||||
Sbjct: 28766 tatttgttggcaatgtacc 28784
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>gb|AC011286.7| Homo sapiens BAC clone RP11-4H21 from 2, complete sequence
          Length = 168863

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 74    aaggggagaacactgcgat 92
             |||||||||||||||||||
Sbjct: 70552 aaggggagaacactgcgat 70534
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>dbj|AP000871.7| Homo sapiens genomic DNA, chromosome 11 clone:RP11-709J7, complete
              sequence
          Length = 199118

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 20     actgccaaggatgtggctc 38
              |||||||||||||||||||
Sbjct: 105806 actgccaaggatgtggctc 105824
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>gb|AC118735.8| Mus musculus chromosome 7, clone RP24-170M16, complete sequence
          Length = 142938

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 97    attgtcccaggccaagcac 115
             |||||||||||||||||||
Sbjct: 68351 attgtcccaggccaagcac 68333
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>emb|AJ512175.1|SAM512175 Sphaeralcea ambigua external transcribed spacer (ETS), specimen
           voucher Andreasen 291 (UC)
          Length = 535

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 64  caaggaccacaaggggaga 82
           |||||||||||||||||||
Sbjct: 199 caaggaccacaaggggaga 181
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>gb|AC149592.2| Mus musculus BAC clone RP23-270M4 from 14, complete sequence
          Length = 204601

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 124    tgttggcaatgtacccaaagggt 146
              |||| ||||||||||||||||||
Sbjct: 103283 tgtttgcaatgtacccaaagggt 103261
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>dbj|AP006630.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT12F12, TM0028a,
             complete sequence
          Length = 60126

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 121   atttgttggcaatgtacccaaag 143
             ||||| |||||||||||||||||
Sbjct: 42425 atttggtggcaatgtacccaaag 42403
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>dbj|AB014524.1| Homo sapiens mRNA for KIAA0624 protein, partial cds
          Length = 6542

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 20   actgccaaggatgtggctc 38
            |||||||||||||||||||
Sbjct: 1641 actgccaaggatgtggctc 1623
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>emb|AL773550.4| Mouse DNA sequence from clone RP23-433P3 on chromosome 4, complete
             sequence
          Length = 142900

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 126   ttggcaatgtacccaaagg 144
             |||||||||||||||||||
Sbjct: 91058 ttggcaatgtacccaaagg 91040


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,748,238
Number of Sequences: 3902068
Number of extensions: 1748238
Number of successful extensions: 136446
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 136178
Number of HSP's gapped (non-prelim): 268
length of query: 199
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 177
effective length of database: 17,147,199,772
effective search space: 3035054359644
effective search space used: 3035054359644
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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