ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags37p23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_465873.1| Oryza sativa (japonica cultivar-group), mRNA 92 1e-15
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 92 1e-15
3dbj|AP005285.2| Oryza sativa (japonica cultivar-group) genomic D... 92 1e-15
4dbj|AK102956.1| Oryza sativa (japonica cultivar-group) cDNA clon... 92 1e-15
5dbj|AK062243.1| Oryza sativa (japonica cultivar-group) cDNA clon... 92 1e-15
6gb|AY110441.1| Zea mays CL14665_2 mRNA sequence 78 2e-11
7gb|AY107699.1| Zea mays PCO077134 mRNA sequence 72 1e-09
8gb|AC134552.4| Mus musculus BAC clone RP24-279K10 from chromosom... 40 4.0
9ref|XM_900404.2| PREDICTED: Mus musculus inositol 1,4,5-trisphos... 40 4.0
10gb|AC121838.2| Mus musculus BAC clone RP24-74O18 from 1, complet... 40 4.0
11dbj|AP007161.1| Aspergillus oryzae RIB40 genomic DNA, SC012 40 4.0
12dbj|AK050506.1| Mus musculus adult pancreas islet cells cDNA, RI... 40 4.0
13emb|AL359680.4|CNS05TEY Human chromosome 14 DNA sequence BAC R-7... 40 4.0
14emb|AL672284.15| Mouse DNA sequence from clone RP23-39I7 on chro... 40 4.0
15gb|AC166241.7| Mus musculus chromosome 8, clone RP23-125A7, comp... 40 4.0

>ref|XM_465873.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1580

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 88/102 (86%)
 Strand = Plus / Plus

                                                                        
Query: 25   tcttgtttctggcaagggacaaggttgacaaagccgtcctgaatgtagctggagccgagc 84
            |||||||  |||||||||||||||||||||| |||||||||||    |||||||||||||
Sbjct: 1262 tcttgttcttggcaagggacaaggttgacaaggccgtcctgaacactgctggagccgagc 1321

                                                      
Query: 85   tcaactcggccatcaccaatcctttcttcggagtcctctaaa 126
            | || || || ||||| ||||||||||| |||||||| ||||
Sbjct: 1322 tgaattctgctatcactaatcctttctttggagtcctttaaa 1363



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 88/102 (86%)
 Strand = Plus / Plus

                                                                            
Query: 25       tcttgtttctggcaagggacaaggttgacaaagccgtcctgaatgtagctggagccgagc 84
                |||||||  |||||||||||||||||||||| |||||||||||    |||||||||||||
Sbjct: 18035630 tcttgttcttggcaagggacaaggttgacaaggccgtcctgaacactgctggagccgagc 18035689

                                                          
Query: 85       tcaactcggccatcaccaatcctttcttcggagtcctctaaa 126
                | || || || ||||| ||||||||||| |||||||| ||||
Sbjct: 18035690 tgaattctgctatcactaatcctttctttggagtcctttaaa 18035731



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>dbj|AP005285.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1003_F04
          Length = 139563

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 88/102 (86%)
 Strand = Plus / Plus

                                                                         
Query: 25    tcttgtttctggcaagggacaaggttgacaaagccgtcctgaatgtagctggagccgagc 84
             |||||||  |||||||||||||||||||||| |||||||||||    |||||||||||||
Sbjct: 97224 tcttgttcttggcaagggacaaggttgacaaggccgtcctgaacactgctggagccgagc 97283

                                                       
Query: 85    tcaactcggccatcaccaatcctttcttcggagtcctctaaa 126
             | || || || ||||| ||||||||||| |||||||| ||||
Sbjct: 97284 tgaattctgctatcactaatcctttctttggagtcctttaaa 97325



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>dbj|AK102956.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033115G09, full
            insert sequence
          Length = 1580

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 88/102 (86%)
 Strand = Plus / Plus

                                                                        
Query: 25   tcttgtttctggcaagggacaaggttgacaaagccgtcctgaatgtagctggagccgagc 84
            |||||||  |||||||||||||||||||||| |||||||||||    |||||||||||||
Sbjct: 1262 tcttgttcttggcaagggacaaggttgacaaggccgtcctgaacactgctggagccgagc 1321

                                                      
Query: 85   tcaactcggccatcaccaatcctttcttcggagtcctctaaa 126
            | || || || ||||| ||||||||||| |||||||| ||||
Sbjct: 1322 tgaattctgctatcactaatcctttctttggagtcctttaaa 1363



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>dbj|AK062243.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-E12, full
           insert sequence
          Length = 940

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 88/102 (86%)
 Strand = Plus / Plus

                                                                       
Query: 25  tcttgtttctggcaagggacaaggttgacaaagccgtcctgaatgtagctggagccgagc 84
           |||||||  |||||||||||||||||||||| |||||||||||    |||||||||||||
Sbjct: 636 tcttgttcttggcaagggacaaggttgacaaggccgtcctgaacactgctggagccgagc 695

                                                     
Query: 85  tcaactcggccatcaccaatcctttcttcggagtcctctaaa 126
           | || || || ||||| ||||||||||| |||||||| ||||
Sbjct: 696 tgaattctgctatcactaatcctttctttggagtcctttaaa 737



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>gb|AY110441.1| Zea mays CL14665_2 mRNA sequence
          Length = 676

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 48/51 (94%)
 Strand = Plus / Minus

                                                              
Query: 71  agctggagccgagctcaactcggccatcaccaatcctttcttcggagtcct 121
           ||||||||||||||| || || |||||||||||||||||||||||||||||
Sbjct: 359 agctggagccgagctgaattctgccatcaccaatcctttcttcggagtcct 309



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>gb|AY107699.1| Zea mays PCO077134 mRNA sequence
          Length = 916

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 81/96 (84%)
 Strand = Plus / Plus

                                                                       
Query: 26  cttgtttctggcaagggacaaggttgacaaagccgtcctgaatgtagctggagccgagct 85
           ||||||| |||||||||| || || ||||| ||  |||||||   |||||||||||||||
Sbjct: 628 cttgtttttggcaagggaaaaagtcgacaaggctatcctgaacacagctggagccgagct 687

                                               
Query: 86  caactcggccatcaccaatcctttcttcggagtcct 121
            || || |||||||||||||||||||| || |||||
Sbjct: 688 gaattctgccatcaccaatcctttctttggggtcct 723



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>gb|AC134552.4| Mus musculus BAC clone RP24-279K10 from chromosome 8, complete sequence
          Length = 154774

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 249    cacaggaaaaatttcacaca 268
              ||||||||||||||||||||
Sbjct: 111350 cacaggaaaaatttcacaca 111369



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>ref|XM_900404.2| PREDICTED: Mus musculus inositol 1,4,5-trisphosphate 3-kinase B,
            transcript variant 2 (Itpkb), mRNA
          Length = 6656

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 268  agggaactggttctagcaag 287
            ||||||||||||||||||||
Sbjct: 5449 agggaactggttctagcaag 5468



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>gb|AC121838.2| Mus musculus BAC clone RP24-74O18 from 1, complete sequence
          Length = 180961

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 268    agggaactggttctagcaag 287
              ||||||||||||||||||||
Sbjct: 112498 agggaactggttctagcaag 112479



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>dbj|AP007161.1| Aspergillus oryzae RIB40 genomic DNA, SC012
          Length = 2668010

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 121     tctaaaaccgagaaattccc 140
               ||||||||||||||||||||
Sbjct: 1721203 tctaaaaccgagaaattccc 1721222



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>dbj|AK050506.1| Mus musculus adult pancreas islet cells cDNA, RIKEN full-length
            enriched library, clone:C820005F14
            product:1D-myo-inositol-trisphosphate 3-kinase (EC
            2.7.1.127) B homolog [Rattus norvegicus], full insert
            sequence
          Length = 4595

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 268  agggaactggttctagcaag 287
            ||||||||||||||||||||
Sbjct: 3393 agggaactggttctagcaag 3412



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>emb|AL359680.4|CNS05TEY Human chromosome 14 DNA sequence BAC R-716B8 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 175009

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 93     gccatcaccaatcctttctt 112
              ||||||||||||||||||||
Sbjct: 139411 gccatcaccaatcctttctt 139392



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>emb|AL672284.15| Mouse DNA sequence from clone RP23-39I7 on chromosome X, complete
              sequence
          Length = 227918

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 217    gtgcaatcttgcttatgaga 236
              ||||||||||||||||||||
Sbjct: 118391 gtgcaatcttgcttatgaga 118410



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>gb|AC166241.7| Mus musculus chromosome 8, clone RP23-125A7, complete sequence
          Length = 208067

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 249   cacaggaaaaatttcacaca 268
             ||||||||||||||||||||
Sbjct: 28869 cacaggaaaaatttcacaca 28888


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,422,600
Number of Sequences: 3902068
Number of extensions: 2422600
Number of successful extensions: 38801
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 38755
Number of HSP's gapped (non-prelim): 41
length of query: 307
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 285
effective length of database: 17,147,199,772
effective search space: 4886951935020
effective search space used: 4886951935020
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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