ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags38c12 |
|---|---|
| Clone Library Name | barley_pub |
>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor| Length = 315 Score = 258 bits (659), Expect = 1e-68 Identities = 121/172 (70%), Positives = 150/172 (87%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 GNLPYDVDSE LA+LF+QAGVVE+AEVIYNR++ QSRGFGFVTMST+EEA+KA+E +NRY Sbjct: 141 GNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRY 200 Query: 210 DISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNAT 389 D++GRLL VN+AA+RG R ERPPR F S+R YVGN+PW +D+RL Q+FSEHG+VV+A Sbjct: 201 DVNGRLLTVNKAARRGERPERPPRTFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSAR 260 Query: 390 IVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 545 +VYDRETGRSRGFGFVTMAS+ ++ AI+ LDGQ +DGR +RVNVA +R +R Sbjct: 261 VVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAEDRSRR 312 Score = 72.8 bits (177), Expect = 8e-13 Identities = 33/82 (40%), Positives = 55/82 (67%) Frame = +3 Query: 300 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 479 + +VGNLP+ + L ++F + G V A ++Y+R+T +SRGFGFVTM++ E+ + A+ Sbjct: 137 KLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEM 196 Query: 480 LDGQEMDGRPLRVNVAAERPQR 545 + +++GR L VN AA R +R Sbjct: 197 YNRYDVNGRLLTVNKAARRGER 218
>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)| Length = 276 Score = 250 bits (639), Expect = 2e-66 Identities = 117/172 (68%), Positives = 148/172 (86%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 GNLPYD+DSE LAQLF QAGVVE+AEVIYNRE+ +SRGFGFVTMST+EEADKA+E +++Y Sbjct: 102 GNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQY 161 Query: 210 DISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNAT 389 D++GRLL VN+AA RGSR ER PR F ++R YVGN+PW +D+RL Q+FSEHG+VV+A Sbjct: 162 DLNGRLLTVNKAAPRGSRPERAPRTFQPTYRIYVGNIPWDIDDARLEQVFSEHGKVVSAR 221 Query: 390 IVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 545 +V+DRE+GRSRGFGFVTM+S+ ++ AI+ LDGQ +DGR +RVN A ERP+R Sbjct: 222 VVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAEERPRR 273 Score = 77.0 bits (188), Expect = 4e-14 Identities = 37/82 (45%), Positives = 53/82 (64%) Frame = +3 Query: 300 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 479 + +VGNLP+ + L Q+F + G V A ++Y+RET RSRGFGFVTM++ E+ D A+ Sbjct: 98 KLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVEL 157 Query: 480 LDGQEMDGRPLRVNVAAERPQR 545 +++GR L VN AA R R Sbjct: 158 YSQYDLNGRLLTVNKAAPRGSR 179
>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) Length = 329 Score = 246 bits (629), Expect = 3e-65 Identities = 117/172 (68%), Positives = 144/172 (83%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 GNL YDV+S+ LA LF+QAG VE+AEVIYNRE+ QSRGFGFVTMS+++EA+ A+E FNRY Sbjct: 155 GNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRY 214 Query: 210 DISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNAT 389 D++GRLL VN+AA RGSR ER PR + +FR YVGNLPW ++ RL Q+FSEHG+VV A Sbjct: 215 DLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEAR 274 Query: 390 IVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 545 +VYDRETGRSRGFGFVTM+ ++L+ AISALDGQ ++GR +RVNVA ERP R Sbjct: 275 VVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEERPPR 326 Score = 70.5 bits (171), Expect = 4e-12 Identities = 33/82 (40%), Positives = 52/82 (63%) Frame = +3 Query: 300 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 479 + +VGNL + L +F + G V A ++Y+RET +SRGFGFVTM+S ++ ++A+ Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 210 Query: 480 LDGQEMDGRPLRVNVAAERPQR 545 + +++GR L VN AA R R Sbjct: 211 FNRYDLNGRLLTVNKAAPRGSR 232
>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)| Length = 233 Score = 239 bits (611), Expect = 4e-63 Identities = 117/174 (67%), Positives = 141/174 (81%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 GNLPYDVDSE+LA +FD AGVVE+AEVIYNRE+ +SRGFGFVTMST+EEA+KA+E N Y Sbjct: 60 GNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGY 119 Query: 210 DISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNAT 389 D+ GR L VN+AA RGS P F S R YVGNLPW + SRL Q+FSEHG+VV+A Sbjct: 120 DMDGRQLTVNKAAPRGSPERAPRGDFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSAR 179 Query: 390 IVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQRGF 551 +V DRETGRSRGFGFVTM+S+ +++ AI+ALDGQ +DGR +RVNVA ERP+R F Sbjct: 180 VVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAEERPRRAF 233 Score = 82.4 bits (202), Expect = 1e-15 Identities = 43/99 (43%), Positives = 61/99 (61%), Gaps = 2/99 (2%) Frame = +3 Query: 255 GSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGF 434 G PP + + +VGNLP+ + +L +F G V A ++Y+RET RSRGFGF Sbjct: 45 GQGFSEPPEEA----KLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGF 100 Query: 435 VTMASKEDLDSAISALDGQEMDGRPLRVNVAAER--PQR 545 VTM++ E+ + A+ L+G +MDGR L VN AA R P+R Sbjct: 101 VTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGSPER 139
>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)| Length = 292 Score = 173 bits (439), Expect = 3e-43 Identities = 94/200 (47%), Positives = 124/200 (62%), Gaps = 26/200 (13%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 GNLP+ VDS LA LF++AG VE+ EVIY++ SG+SRGFGFVTMST EE + A + FN Y Sbjct: 93 GNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGY 152 Query: 210 DISGRLLNVNRAAQRGSRVE--------------------------RPPRQFASSFRAYV 311 +I GR + VN R R R SS R YV Sbjct: 153 EIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYV 212 Query: 312 GNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQ 491 GNL W +D L ++FSE G VV+A +VYDR++GRSRGFGFVT +S ++++ AI +L+G Sbjct: 213 GNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGI 272 Query: 492 EMDGRPLRVNVAAERPQRGF 551 ++DGR +RV+ A ERP+R F Sbjct: 273 DLDGRSIRVSAAEERPRRQF 292 Score = 80.5 bits (197), Expect = 4e-15 Identities = 42/107 (39%), Positives = 63/107 (58%), Gaps = 3/107 (2%) Frame = +3 Query: 264 VERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTM 443 V PR F+ + +VGNLP+ + + L +F G V ++YD+ +GRSRGFGFVTM Sbjct: 78 VAEQPR-FSEDLKLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTM 136 Query: 444 ASKEDLDSAISALDGQEMDGRPLRVNVA---AERPQRGF*CGAAAES 575 ++KE++++A +G E+DGR +RVN A+R F G S Sbjct: 137 STKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNS 183
>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)| Length = 291 Score = 172 bits (436), Expect = 7e-43 Identities = 93/200 (46%), Positives = 124/200 (62%), Gaps = 26/200 (13%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 GNLP+ VDS LA LF++AG VE+ EVIY++ +G+SRGFGFVTMST EE + A + FN Y Sbjct: 92 GNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGY 151 Query: 210 DISGRLLNVNRAAQRGSRVE--------------------------RPPRQFASSFRAYV 311 +I GR + VN R R R SS R YV Sbjct: 152 EIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYV 211 Query: 312 GNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQ 491 GNL W +D L ++FSE G VV+A +VYDR++GRSRGFGFVT +S ++++ AI +L+G Sbjct: 212 GNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGV 271 Query: 492 EMDGRPLRVNVAAERPQRGF 551 ++DGR +RV+ A ERP+R F Sbjct: 272 DLDGRSIRVSAAEERPRRQF 291 Score = 82.4 bits (202), Expect = 1e-15 Identities = 43/107 (40%), Positives = 63/107 (58%), Gaps = 3/107 (2%) Frame = +3 Query: 264 VERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTM 443 V PR F+ + +VGNLP+ + + L +F G V ++YD+ TGRSRGFGFVTM Sbjct: 77 VAEQPR-FSEDLKLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTM 135 Query: 444 ASKEDLDSAISALDGQEMDGRPLRVNVA---AERPQRGF*CGAAAES 575 ++KE++++A +G E+DGR +RVN A+R F G S Sbjct: 136 STKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNS 182
>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)| Length = 273 Score = 172 bits (435), Expect = 9e-43 Identities = 89/179 (49%), Positives = 121/179 (67%), Gaps = 7/179 (3%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 GNLP+ DS LA+LF++AG VE+ EVIY++ +G+SRGFGFVTMS+ EE + A + FN Y Sbjct: 92 GNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGY 151 Query: 210 DISGRLLNVNRAAQRGSRVERPPR-------QFASSFRAYVGNLPWQAEDSRLVQMFSEH 368 ++ GR L VN R R F SS R YVGNL W + L +FSE Sbjct: 152 ELDGRALRVNSGPPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQ 211 Query: 369 GEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 545 G+VV+A +VYDR++GRSRGFGFVT +S E++++AI +LDG +++GR +RV+ A RP R Sbjct: 212 GKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPPR 270 Score = 88.6 bits (218), Expect = 1e-17 Identities = 39/81 (48%), Positives = 57/81 (70%) Frame = +3 Query: 279 RQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKED 458 R F+ + +VGNLP+ A+ + L ++F G V ++YD+ TGRSRGFGFVTM+SKE+ Sbjct: 81 RNFSPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEE 140 Query: 459 LDSAISALDGQEMDGRPLRVN 521 +++A +G E+DGR LRVN Sbjct: 141 VEAACQQFNGYELDGRALRVN 161
>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast| precursor Length = 289 Score = 170 bits (431), Expect = 3e-42 Identities = 89/191 (46%), Positives = 122/191 (63%), Gaps = 19/191 (9%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 GNLP++VDS +LAQLF+ AG VE+ EVIY++ +G+SRGFGFVTMS++ E + A + FN Y Sbjct: 96 GNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGY 155 Query: 210 DISGRLLNVNRAAQRGSRVERPPRQFASSF-------------------RAYVGNLPWQA 332 ++ GR L VN R + R SSF R YVGNL W Sbjct: 156 ELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGV 215 Query: 333 EDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPL 512 +D L +FSE G+VV A ++YDR++GRS+GFGFVT S +++ +AI +LDG ++DGR + Sbjct: 216 DDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQI 275 Query: 513 RVNVAAERPQR 545 RV+ A RP R Sbjct: 276 RVSEAEARPPR 286 Score = 91.7 bits (226), Expect = 2e-18 Identities = 41/93 (44%), Positives = 63/93 (67%), Gaps = 2/93 (2%) Frame = +3 Query: 273 PPRQ--FASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMA 446 PP++ F++ + +VGNLP+ + ++L Q+F G V ++YD+ TGRSRGFGFVTM+ Sbjct: 81 PPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMS 140 Query: 447 SKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 545 S ++++A +G E+DGRPLRVN P+R Sbjct: 141 SVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKR 173 Score = 68.2 bits (165), Expect = 2e-11 Identities = 38/93 (40%), Positives = 53/93 (56%) Frame = +3 Query: 6 GRRPRCTSGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADK 185 G R GNL + VD L LF + G V A VIY+R+SG+S+GFGFVT + +E Sbjct: 201 GSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQN 260 Query: 186 AIETFNRYDISGRLLNVNRAAQRGSRVERPPRQ 284 AI++ + D+ GR + V+ A RPPR+ Sbjct: 261 AIKSLDGADLDGRQIRVSEAE------ARPPRR 287
>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)| Length = 279 Score = 166 bits (421), Expect = 4e-41 Identities = 88/185 (47%), Positives = 121/185 (65%), Gaps = 13/185 (7%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 GNL + DS LA+LF++AG VE+ EVIY++ +G+SRGFGFVTMS+ EE + A + FN Y Sbjct: 92 GNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGY 151 Query: 210 DISGRLLNVNRAAQRGSRVERPPRQ-------------FASSFRAYVGNLPWQAEDSRLV 350 ++ GR L VN R R+ F SS R YVGNL W + L Sbjct: 152 ELDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALE 211 Query: 351 QMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAA 530 +FSE G+VV+A +VYDR++GRSRGFGFVT +S E++++AI +LDG +++GR +RV+ A Sbjct: 212 TLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAE 271 Query: 531 ERPQR 545 RP R Sbjct: 272 ARPPR 276 Score = 84.7 bits (208), Expect = 2e-16 Identities = 38/81 (46%), Positives = 56/81 (69%) Frame = +3 Query: 279 RQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKED 458 R F+ + +VGNL + A+ + L ++F G V ++YD+ TGRSRGFGFVTM+SKE+ Sbjct: 81 RNFSPDLKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEE 140 Query: 459 LDSAISALDGQEMDGRPLRVN 521 +++A +G E+DGR LRVN Sbjct: 141 VEAACQQFNGYELDGRALRVN 161
>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor| Length = 324 Score = 134 bits (338), Expect = 2e-31 Identities = 68/178 (38%), Positives = 111/178 (62%), Gaps = 9/178 (5%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 GNLP+ + S +L+++F +AG V E++Y+R + +SRGF FVTM ++EEA +AI F+ Sbjct: 119 GNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGS 178 Query: 210 DISGRLLNVN-----RAAQR---GSRVERPPRQFASS-FRAYVGNLPWQAEDSRLVQMFS 362 + GR + VN R +R +++ + F S + YV NL W L F+ Sbjct: 179 QVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQGLRDAFA 238 Query: 363 EHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAER 536 + ++A ++YDR +GRSRGFGF+T +S E ++SA+ ++ E++GRPLR+NVA ++ Sbjct: 239 DQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLRLNVAGQK 296 Score = 84.7 bits (208), Expect = 2e-16 Identities = 46/123 (37%), Positives = 63/123 (51%) Frame = +3 Query: 153 VTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQA 332 + +ST +E D L+ + + ER + R YVGNLP+ Sbjct: 66 IFLSTCASVSDGVEVVQEDDEEEVALSAEEEEEIEEKEERVESESVEGGRLYVGNLPFSM 125 Query: 333 EDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPL 512 S+L ++F+E G V N IVYDR T RSRGF FVTM S E+ AI DG ++ GR + Sbjct: 126 TSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTV 185 Query: 513 RVN 521 +VN Sbjct: 186 KVN 188
>RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, chloroplast| precursor (PSRP-2) Length = 260 Score = 122 bits (305), Expect = 1e-27 Identities = 68/181 (37%), Positives = 111/181 (61%), Gaps = 6/181 (3%) Frame = +3 Query: 3 EGRRPRCTSGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEAD 182 EG R R GN+P +++++ L + ++ G +E+AEV+Y++ SG+SR FGFVTM T+E+A+ Sbjct: 81 EGAR-RLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDAN 139 Query: 183 KAIETFNRYDISGRLLNVNRAAQ--RG---SRVERPPRQFASS-FRAYVGNLPWQAEDSR 344 IE N +I GR + VN + G + + QF S ++ Y+GNL + Sbjct: 140 AVIEKLNDTEIGGRKIKVNITEKPLEGMDIATTQAEDSQFVESPYKVYIGNLAKTVTNEL 199 Query: 345 LVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNV 524 L FSE G+V+ A + T +S GFGFV+ +S+E++++AI AL+ ++G+ +RVN Sbjct: 200 LKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALNNSVLEGQKIRVNK 259 Query: 525 A 527 A Sbjct: 260 A 260
>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)| Length = 414 Score = 105 bits (263), Expect = 8e-23 Identities = 57/175 (32%), Positives = 98/175 (56%), Gaps = 5/175 (2%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G L + +D E L + F+ G V A VIY R + +SRG+G+V A+KAI+ Sbjct: 173 GRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGK 232 Query: 210 DISGRLLNVNRAAQRGSRVERPPRQFAS-----SFRAYVGNLPWQAEDSRLVQMFSEHGE 374 +I GR +N + + + + ++F S ++GNL + A+ + ++F++HGE Sbjct: 233 EIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIFELFAKHGE 292 Query: 375 VVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERP 539 VV+ I ET + +GFG+V ++ ED A+ AL G+ +D RP+R++ ++ RP Sbjct: 293 VVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFSSPRP 347 Score = 69.3 bits (168), Expect = 9e-12 Identities = 29/78 (37%), Positives = 48/78 (61%) Frame = +3 Query: 306 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 485 +VG L W +D L + F G V+ A ++Y+R T RSRG+G+V +K + AI + Sbjct: 171 FVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQ 230 Query: 486 GQEMDGRPLRVNVAAERP 539 G+E+DGRP+ +++ +P Sbjct: 231 GKEIDGRPINCDMSTSKP 248
>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein cp29) Length = 342 Score = 98.2 bits (243), Expect = 2e-20 Identities = 43/86 (50%), Positives = 64/86 (74%) Frame = +3 Query: 291 SSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSA 470 S R YVGNL W +D L +F+E G+VV A ++YDR++GRS+GFGFVT++S +++ A Sbjct: 255 SGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKA 314 Query: 471 ISALDGQEMDGRPLRVNVAAERPQRG 548 I++L+G ++DGR +RV+ A RP RG Sbjct: 315 INSLNGADLDGRQIRVSEAEARPPRG 340 Score = 85.9 bits (211), Expect = 9e-17 Identities = 46/87 (52%), Positives = 58/87 (66%), Gaps = 3/87 (3%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 GNL ++VDS +LAQLF+ AG VE+ EVIY++ +G+SRGFGFVTMST E + A + FN Y Sbjct: 104 GNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGY 163 Query: 210 DISGRLLNVNRAAQRGSRVE---RPPR 281 + GR L VN R E R PR Sbjct: 164 EFEGRPLRVNAGPPPPKREESFSRGPR 190 Score = 83.2 bits (204), Expect = 6e-16 Identities = 39/94 (41%), Positives = 59/94 (62%) Frame = +3 Query: 264 VERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTM 443 VER F+ + +VGNL + + ++L Q+F G V ++YD+ TGRSRGFGFVTM Sbjct: 90 VER--NSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTM 147 Query: 444 ASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 545 ++ ++++A +G E +GRPLRVN P+R Sbjct: 148 STAAEVEAAAQQFNGYEFEGRPLRVNAGPPPPKR 181 Score = 74.3 bits (181), Expect = 3e-13 Identities = 39/86 (45%), Positives = 53/86 (61%) Frame = +3 Query: 6 GRRPRCTSGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADK 185 G R GNL + VD L LF++ G V A VIY+R+SG+S+GFGFVT+S+ +E K Sbjct: 254 GSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQK 313 Query: 186 AIETFNRYDISGRLLNVNRAAQRGSR 263 AI + N D+ GR + V+ A R R Sbjct: 314 AINSLNGADLDGRQIRVSEAEARPPR 339
>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein| 4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP) (Activated-platelet protein 1) (APP-1) Length = 644 Score = 97.1 bits (240), Expect = 4e-20 Identities = 59/181 (32%), Positives = 99/181 (54%), Gaps = 10/181 (5%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 N +VD E L +LF Q G +V+ + +G+S+GFGFV+ E+A+KA+E N + Sbjct: 197 NFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVEEMNGKE 255 Query: 213 ISGRLLNVNRAAQRGSRVERPPRQFA----------SSFRAYVGNLPWQAEDSRLVQMFS 362 ISG+++ V RA ++ R R+F Y+ NL +D +L + FS Sbjct: 256 ISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFS 315 Query: 363 EHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQ 542 G + +A ++ E GRS+GFGFV +S E+ A++ ++G+ + +PL V +A + + Sbjct: 316 PFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 373 Query: 543 R 545 R Sbjct: 374 R 374 Score = 82.0 bits (201), Expect = 1e-15 Identities = 51/171 (29%), Positives = 90/171 (52%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 NL +D++ L F G + +V+ + E+G S+G+ FV T E ADKAIE N Sbjct: 105 NLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKMNGML 162 Query: 213 ISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATI 392 ++ R + V R R R + Y+ N + +D L ++FS+ G+ ++ + Sbjct: 163 LNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKV 222 Query: 393 VYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 545 + D G+S+GFGFV+ ED + A+ ++G+E+ G+ + V A ++ +R Sbjct: 223 MRD-PNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVER 272 Score = 46.2 bits (108), Expect = 8e-05 Identities = 29/85 (34%), Positives = 44/85 (51%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 NL +D E+L + F G + A+V+ E G+S+GFGFV S+ EEA KA+ N Sbjct: 300 NLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRI 357 Query: 213 ISGRLLNVNRAAQRGSRVERPPRQF 287 + + L V A ++ R Q+ Sbjct: 358 VGSKPLYVALAQRKEERKAHLTNQY 382
>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 96.3 bits (238), Expect = 7e-20 Identities = 60/181 (33%), Positives = 99/181 (54%), Gaps = 10/181 (5%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 N D+D ERL +LF + G +V+ + ESG+S+GFGFV+ E+A KA++ N + Sbjct: 197 NFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKE 255 Query: 213 ISGRLLNVNRAAQRGSRVERPPRQFA----------SSFRAYVGNLPWQAEDSRLVQMFS 362 ++G+ + V RA ++ R R+F YV NL +D RL + FS Sbjct: 256 LNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFS 315 Query: 363 EHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQ 542 G + +A ++ E GRS+GFGFV +S E+ A++ ++G+ + +PL V +A + + Sbjct: 316 PFGTITSAKVM--MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373 Query: 543 R 545 R Sbjct: 374 R 374 Score = 84.3 bits (207), Expect = 3e-16 Identities = 51/171 (29%), Positives = 91/171 (53%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 NL +D++ L F G + +V+ + E+G S+G+GFV T E A++AIE N Sbjct: 105 NLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKMNGML 162 Query: 213 ISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATI 392 ++ R + V R R R + Y+ N +D RL ++F + G ++ + Sbjct: 163 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKV 222 Query: 393 VYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 545 + D E+G+S+GFGFV+ ED A+ ++G+E++G+ + V A ++ +R Sbjct: 223 MTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVER 272 Score = 57.4 bits (137), Expect = 3e-08 Identities = 47/181 (25%), Positives = 86/181 (47%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G+L DV L + F AG + V + + +S G+ +V +A++A++T N Sbjct: 16 GDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFD 75 Query: 210 DISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNAT 389 I G+ + + +QR P + + ++ NL ++ L FS G +++ Sbjct: 76 VIKGKPVRI-MWSQRD-----PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 129 Query: 390 IVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQRGF*CGAAA 569 +V D E G S+G+GFV ++E + AI ++G ++ R + V R +R GA A Sbjct: 130 VVCD-ENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARA 187 Query: 570 E 572 + Sbjct: 188 K 188 Score = 47.8 bits (112), Expect = 3e-05 Identities = 30/85 (35%), Positives = 45/85 (52%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 NL +D ERL + F G + A+V+ E G+S+GFGFV S+ EEA KA+ N Sbjct: 300 NLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRI 357 Query: 213 ISGRLLNVNRAAQRGSRVERPPRQF 287 ++ + L V A ++ R Q+ Sbjct: 358 VATKPLYVALAQRKEERQAHLTNQY 382
>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 96.3 bits (238), Expect = 7e-20 Identities = 60/181 (33%), Positives = 99/181 (54%), Gaps = 10/181 (5%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 N D+D ERL +LF + G +V+ + ESG+S+GFGFV+ E+A KA++ N + Sbjct: 197 NFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKE 255 Query: 213 ISGRLLNVNRAAQRGSRVERPPRQFA----------SSFRAYVGNLPWQAEDSRLVQMFS 362 ++G+ + V RA ++ R R+F YV NL +D RL + FS Sbjct: 256 LNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFS 315 Query: 363 EHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQ 542 G + +A ++ E GRS+GFGFV +S E+ A++ ++G+ + +PL V +A + + Sbjct: 316 PFGTITSAKVM--MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373 Query: 543 R 545 R Sbjct: 374 R 374 Score = 82.8 bits (203), Expect = 8e-16 Identities = 50/171 (29%), Positives = 91/171 (53%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 NL +D++ L F G + +V+ + E+G S+G+GFV T E A++AIE N Sbjct: 105 NLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKMNGML 162 Query: 213 ISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATI 392 ++ R + V R + R + Y+ N +D RL ++F + G ++ + Sbjct: 163 LNDRKVFVGRFKSQKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKV 222 Query: 393 VYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 545 + D E+G+S+GFGFV+ ED A+ ++G+E++G+ + V A ++ +R Sbjct: 223 MTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVER 272 Score = 55.8 bits (133), Expect = 1e-07 Identities = 46/181 (25%), Positives = 86/181 (47%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G+L DV L + F AG + V + + +S G+ +V +A++A++T N Sbjct: 16 GDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFD 75 Query: 210 DISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNAT 389 I G+ + + +QR P + + ++ NL ++ L FS G +++ Sbjct: 76 VIKGKPVRI-MWSQRD-----PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 129 Query: 390 IVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQRGF*CGAAA 569 +V D E G S+G+GFV ++E + AI ++G ++ R + V + +R GA A Sbjct: 130 VVCD-ENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAELGARA 187 Query: 570 E 572 + Sbjct: 188 K 188 Score = 47.8 bits (112), Expect = 3e-05 Identities = 30/85 (35%), Positives = 45/85 (52%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 NL +D ERL + F G + A+V+ E G+S+GFGFV S+ EEA KA+ N Sbjct: 300 NLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRI 357 Query: 213 ISGRLLNVNRAAQRGSRVERPPRQF 287 ++ + L V A ++ R Q+ Sbjct: 358 VATKPLYVALAQRKEERQAHLTNQY 382
>EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Embryonic poly(A)| binding protein) (ePABP) Length = 629 Score = 95.9 bits (237), Expect = 9e-20 Identities = 59/181 (32%), Positives = 97/181 (53%), Gaps = 10/181 (5%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 N D+D +RL ++F G +V+ + ++G+SRGFGFV EEA KA+ N + Sbjct: 197 NFGEDMDDKRLREIFSAFGNTLSVKVMMD-DTGRSRGFGFVNYGNHEEAQKAVSEMNGKE 255 Query: 213 ISGRLLNVNRAAQRGSRVERPPRQFA----------SSFRAYVGNLPWQAEDSRLVQMFS 362 ++GR++ V RA +R R R+F YV NL +D RL + FS Sbjct: 256 VNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFS 315 Query: 363 EHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQ 542 +G + +A ++ E G S+GFGFV +S E+ A++ ++G+ + +PL V +A + + Sbjct: 316 PYGTITSAKVM--TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEE 373 Query: 543 R 545 R Sbjct: 374 R 374 Score = 88.6 bits (218), Expect = 1e-17 Identities = 54/171 (31%), Positives = 89/171 (52%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 NL +D++ L F G + +V+ + SRG+GFV T E A++AI+T N Sbjct: 105 NLDESIDNKALYDTFSAFGNILSCKVVCDEHG--SRGYGFVHFETQEAANRAIQTMNGML 162 Query: 213 ISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATI 392 ++ R + V R R + Y+ N +D RL ++FS G ++ + Sbjct: 163 LNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKV 222 Query: 393 VYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 545 + D +TGRSRGFGFV + E+ A+S ++G+E++GR + V A +R +R Sbjct: 223 MMD-DTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIER 272 Score = 58.2 bits (139), Expect = 2e-08 Identities = 45/178 (25%), Positives = 82/178 (46%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G+L DV L + F AG + V + + +S G+ ++ +A++A++T N Sbjct: 16 GDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTMNFE 75 Query: 210 DISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNAT 389 I GR + + +QR P + + ++ NL ++ L FS G +++ Sbjct: 76 VIKGRPIRI-MWSQRD-----PGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCK 129 Query: 390 IVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQRGF*CGA 563 +V D SRG+GFV ++E + AI ++G ++ R + V R +R GA Sbjct: 130 VVCDEHG--SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGA 185
>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 95.5 bits (236), Expect = 1e-19 Identities = 60/181 (33%), Positives = 98/181 (54%), Gaps = 10/181 (5%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 N D+D ERL LF + G +V+ + ESG+S+GFGFV+ E+A KA++ N + Sbjct: 197 NFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKE 255 Query: 213 ISGRLLNVNRAAQRGSRVERPPRQFA----------SSFRAYVGNLPWQAEDSRLVQMFS 362 ++G+ + V RA ++ R R+F YV NL +D RL + FS Sbjct: 256 LNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFS 315 Query: 363 EHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQ 542 G + +A ++ E GRS+GFGFV +S E+ A++ ++G+ + +PL V +A + + Sbjct: 316 PFGTITSAKVM--MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373 Query: 543 R 545 R Sbjct: 374 R 374 Score = 83.6 bits (205), Expect = 4e-16 Identities = 51/171 (29%), Positives = 90/171 (52%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 NL +D++ L F G + +V+ + E+G S+G+GFV T E A++AIE N Sbjct: 105 NLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKMNGML 162 Query: 213 ISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATI 392 ++ R + V R R R + Y+ N +D RL +F + G ++ + Sbjct: 163 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKV 222 Query: 393 VYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 545 + D E+G+S+GFGFV+ ED A+ ++G+E++G+ + V A ++ +R Sbjct: 223 MTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVER 272 Score = 57.4 bits (137), Expect = 3e-08 Identities = 47/181 (25%), Positives = 86/181 (47%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G+L DV L + F AG + V + + +S G+ +V +A++A++T N Sbjct: 16 GDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFD 75 Query: 210 DISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNAT 389 I G+ + + +QR P + + ++ NL ++ L FS G +++ Sbjct: 76 VIKGKPVRI-MWSQRD-----PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 129 Query: 390 IVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQRGF*CGAAA 569 +V D E G S+G+GFV ++E + AI ++G ++ R + V R +R GA A Sbjct: 130 VVCD-ENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARA 187 Query: 570 E 572 + Sbjct: 188 K 188 Score = 47.8 bits (112), Expect = 3e-05 Identities = 30/85 (35%), Positives = 45/85 (52%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 NL +D ERL + F G + A+V+ E G+S+GFGFV S+ EEA KA+ N Sbjct: 300 NLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRI 357 Query: 213 ISGRLLNVNRAAQRGSRVERPPRQF 287 ++ + L V A ++ R Q+ Sbjct: 358 VATKPLYVALAQRKEERQAHLTNQY 382
>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 95.5 bits (236), Expect = 1e-19 Identities = 60/181 (33%), Positives = 98/181 (54%), Gaps = 10/181 (5%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 N D+D ERL LF + G +V+ + ESG+S+GFGFV+ E+A KA++ N + Sbjct: 197 NFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKE 255 Query: 213 ISGRLLNVNRAAQRGSRVERPPRQFA----------SSFRAYVGNLPWQAEDSRLVQMFS 362 ++G+ + V RA ++ R R+F YV NL +D RL + FS Sbjct: 256 LNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFS 315 Query: 363 EHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQ 542 G + +A ++ E GRS+GFGFV +S E+ A++ ++G+ + +PL V +A + + Sbjct: 316 PFGTITSAKVM--MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373 Query: 543 R 545 R Sbjct: 374 R 374 Score = 83.6 bits (205), Expect = 4e-16 Identities = 51/171 (29%), Positives = 90/171 (52%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 NL +D++ L F G + +V+ + E+G S+G+GFV T E A++AIE N Sbjct: 105 NLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKMNGML 162 Query: 213 ISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATI 392 ++ R + V R R R + Y+ N +D RL +F + G ++ + Sbjct: 163 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKV 222 Query: 393 VYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 545 + D E+G+S+GFGFV+ ED A+ ++G+E++G+ + V A ++ +R Sbjct: 223 MTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVER 272 Score = 57.4 bits (137), Expect = 3e-08 Identities = 47/181 (25%), Positives = 86/181 (47%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G+L DV L + F AG + V + + +S G+ +V +A++A++T N Sbjct: 16 GDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFD 75 Query: 210 DISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNAT 389 I G+ + + +QR P + + ++ NL ++ L FS G +++ Sbjct: 76 VIKGKPVRI-MWSQRD-----PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 129 Query: 390 IVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQRGF*CGAAA 569 +V D E G S+G+GFV ++E + AI ++G ++ R + V R +R GA A Sbjct: 130 VVCD-ENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARA 187 Query: 570 E 572 + Sbjct: 188 K 188 Score = 47.8 bits (112), Expect = 3e-05 Identities = 30/85 (35%), Positives = 45/85 (52%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 NL +D ERL + F G + A+V+ E G+S+GFGFV S+ EEA KA+ N Sbjct: 300 NLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRI 357 Query: 213 ISGRLLNVNRAAQRGSRVERPPRQF 287 ++ + L V A ++ R Q+ Sbjct: 358 VATKPLYVALAQRKEERQAHLTNQY 382
>EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (Embryonic| poly(A) binding protein-A) (ePABP-A) (ePAB-A) (XePABP-A) Length = 629 Score = 95.5 bits (236), Expect = 1e-19 Identities = 59/181 (32%), Positives = 96/181 (53%), Gaps = 10/181 (5%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 N D+D +RL ++F G +V+ + +SG+SRGFGFV EEA KA+ N + Sbjct: 197 NFGEDMDDKRLREIFSAFGNTLSVKVMMD-DSGRSRGFGFVNYGNHEEAQKAVSEMNGKE 255 Query: 213 ISGRLLNVNRAAQRGSRVERPPRQFA----------SSFRAYVGNLPWQAEDSRLVQMFS 362 ++GR++ V RA +R R R+F YV NL +D RL + F Sbjct: 256 VNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFL 315 Query: 363 EHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQ 542 +G + +A ++ E G S+GFGFV +S E+ A++ ++G+ + +PL V +A + + Sbjct: 316 PYGTITSAKVM--TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEE 373 Query: 543 R 545 R Sbjct: 374 R 374 Score = 87.0 bits (214), Expect = 4e-17 Identities = 53/171 (30%), Positives = 89/171 (52%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 NL +D++ L F G + +V+ + SRG+GFV T E A++AI+T N Sbjct: 105 NLDESIDNKALYDTFSAFGNILSCKVVCDEHG--SRGYGFVHFETHEAANRAIQTMNGML 162 Query: 213 ISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATI 392 ++ R + V R R + Y+ N +D RL ++FS G ++ + Sbjct: 163 LNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKV 222 Query: 393 VYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 545 + D ++GRSRGFGFV + E+ A+S ++G+E++GR + V A +R +R Sbjct: 223 MMD-DSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIER 272 Score = 55.1 bits (131), Expect = 2e-07 Identities = 44/178 (24%), Positives = 80/178 (44%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G+L DV L + F AG + V + + +S + ++ +A++A++T N Sbjct: 16 GDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDTMNFE 75 Query: 210 DISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNAT 389 I GR + + +QR P + + ++ NL ++ L FS G +++ Sbjct: 76 VIKGRPIRI-MWSQRD-----PGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCK 129 Query: 390 IVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQRGF*CGA 563 +V D SRG+GFV + E + AI ++G ++ R + V R +R GA Sbjct: 130 VVCDEHG--SRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGA 185
>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 634 Score = 95.1 bits (235), Expect = 1e-19 Identities = 59/182 (32%), Positives = 96/182 (52%), Gaps = 11/182 (6%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 N D D E+L + F+ G + +V+ ++E G+S+GFGFV T E A+ A++ N D Sbjct: 189 NFTEDFDDEKLKEFFEPYGKITSYKVM-SKEDGKSKGFGFVAFETTEAAEAAVQALNGKD 247 Query: 213 IS-GRLLNVNRAAQRGSRVERPPRQFAS----------SFRAYVGNLPWQAEDSRLVQMF 359 + G+ L V RA ++ R + R+F YV NL +D RL F Sbjct: 248 MGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLRIAF 307 Query: 360 SEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERP 539 S +G + +A ++ D E GRS+GFGFV + + A++ L+G+ + +PL V +A + Sbjct: 308 SPYGNITSAKVMTDEE-GRSKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALAQRKE 366 Query: 540 QR 545 +R Sbjct: 367 ER 368 Score = 77.4 bits (189), Expect = 3e-14 Identities = 48/172 (27%), Positives = 91/172 (52%), Gaps = 1/172 (0%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 NL +D++ + F G + +V + E G S+G+GFV T E A+ +I+ N Sbjct: 96 NLDRAIDNKAIYDTFSAFGNILSCKVATD-EKGNSKGYGFVHFETEEAANTSIDKVNGML 154 Query: 213 ISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATI 392 ++G+ + V + R R + + YV N +D +L + F +G++ + + Sbjct: 155 LNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKV 214 Query: 393 VYDRETGRSRGFGFVTMASKEDLDSAISALDGQEM-DGRPLRVNVAAERPQR 545 + +E G+S+GFGFV + E ++A+ AL+G++M +G+ L V A ++ +R Sbjct: 215 M-SKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAER 265 Score = 43.1 bits (100), Expect = 7e-04 Identities = 21/71 (29%), Positives = 36/71 (50%) Frame = +3 Query: 306 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 485 YVG+LP +S L FS G V++ + D T RS G+ +V D + A+ ++ Sbjct: 5 YVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTMN 64 Query: 486 GQEMDGRPLRV 518 + +P+R+ Sbjct: 65 FDLVRNKPIRI 75
>PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-binding protein| 1-B) (Cytoplasmic poly(A)-binding protein 1-B) (PABP-B) (PABP 1-B) (xPABP1-B) Length = 633 Score = 95.1 bits (235), Expect = 1e-19 Identities = 59/181 (32%), Positives = 97/181 (53%), Gaps = 10/181 (5%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 N D+D ERL + F Q G +V+ + + G+SRGFGFV+ E+A KA++ N D Sbjct: 197 NFGEDMDDERLKEWFGQYGAALSVKVMTD-DHGKSRGFGFVSFERHEDAQKAVDDMNGKD 255 Query: 213 ISGRLLNVNRAAQRGSRVERPPRQFA----------SSFRAYVGNLPWQAEDSRLVQMFS 362 ++G+ + V RA ++ R R+F YV NL +D RL + F+ Sbjct: 256 LNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFT 315 Query: 363 EHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQ 542 G + +A ++ E GRS+GFGFV +S E+ A++ ++G+ + +PL V +A + + Sbjct: 316 PFGSITSAKVM--MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373 Query: 543 R 545 R Sbjct: 374 R 374 Score = 80.5 bits (197), Expect = 4e-15 Identities = 49/171 (28%), Positives = 90/171 (52%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 NL +D++ L F G + +V+ + E+G S+G+GFV T E A++AI+ N Sbjct: 105 NLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIDKMNGML 162 Query: 213 ISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATI 392 ++ R + V R R R + Y+ N +D RL + F ++G ++ + Sbjct: 163 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAALSVKV 222 Query: 393 VYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 545 + D + G+SRGFGFV+ ED A+ ++G++++G+ + V A ++ +R Sbjct: 223 MTD-DHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVER 272 Score = 57.4 bits (137), Expect = 3e-08 Identities = 47/181 (25%), Positives = 86/181 (47%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G+L DV L + F AG + V + + +S G+ +V +A++A++T N Sbjct: 16 GDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFD 75 Query: 210 DISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNAT 389 I G+ + + +QR P + + ++ NL ++ L FS G +++ Sbjct: 76 VIKGKPVRI-MWSQRD-----PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 129 Query: 390 IVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQRGF*CGAAA 569 +V D E G S+G+GFV ++E + AI ++G ++ R + V R +R GA A Sbjct: 130 VVCD-ENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARA 187 Query: 570 E 572 + Sbjct: 188 K 188 Score = 46.6 bits (109), Expect = 6e-05 Identities = 30/85 (35%), Positives = 45/85 (52%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 NL +D ERL + F G + A+V+ E G+S+GFGFV S+ EEA KA+ N Sbjct: 300 NLDDGIDDERLRKEFTPFGSITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRI 357 Query: 213 ISGRLLNVNRAAQRGSRVERPPRQF 287 ++ + L V A ++ R Q+ Sbjct: 358 VATKPLYVALAQRKEERQAHLTNQY 382
>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) (Testis-specific poly(A)-binding protein) Length = 631 Score = 94.7 bits (234), Expect = 2e-19 Identities = 60/181 (33%), Positives = 97/181 (53%), Gaps = 10/181 (5%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 N D+D ERL LF + G +V+ + ESG+S+GFGFV+ E+A KA++ N + Sbjct: 197 NFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKE 255 Query: 213 ISGRLLNVNRAAQRGSRVERPPRQFASS----------FRAYVGNLPWQAEDSRLVQMFS 362 ++G+ + V RA ++ R R F YV NL +D RL + FS Sbjct: 256 LNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFS 315 Query: 363 EHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQ 542 G + +A ++ E GRS+GFGFV +S E+ A++ ++G+ + +PL V +A + + Sbjct: 316 PFGTITSAKVM--MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373 Query: 543 R 545 R Sbjct: 374 R 374 Score = 53.9 bits (128), Expect = 4e-07 Identities = 46/181 (25%), Positives = 82/181 (45%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G+L DV L + F AG + + + + S + +V ++A+ A++T N Sbjct: 16 GDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTMNFD 75 Query: 210 DISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNAT 389 I G+ + + +QR P + + +V NL + L S G +++ Sbjct: 76 VIKGKPVRI-MWSQRD-----PSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCN 129 Query: 390 IVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQRGF*CGAAA 569 +V D E G S+G+GFV + E + AI ++G ++GR + V R +R GA A Sbjct: 130 VVCD-ENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARA 187 Query: 570 E 572 + Sbjct: 188 K 188
>PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) Length = 660 Score = 94.0 bits (232), Expect = 3e-19 Identities = 57/181 (31%), Positives = 95/181 (52%), Gaps = 10/181 (5%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 NLP ++ + L + F + GV+ A V+ +SG SR FGFV E A A+E N Sbjct: 235 NLPKEIGEDELRKTFGKFGVISSA-VVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGIS 293 Query: 213 ISGRLLNVNRAAQRGSRVERPPRQF----------ASSFRAYVGNLPWQAEDSRLVQMFS 362 + +L V RA ++ R E R+F + Y+ NL +D +L +MFS Sbjct: 294 LGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFS 353 Query: 363 EHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQ 542 E+G V ++ ++ + + G SRGFGFV ++ E+ A+S ++G+ + +PL + +A + Sbjct: 354 EYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKED 412 Query: 543 R 545 R Sbjct: 413 R 413 Score = 66.2 bits (160), Expect = 7e-11 Identities = 46/171 (26%), Positives = 80/171 (46%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 NL +D++ L + F G + +V + +G+S+G+GFV E A AI+ N Sbjct: 142 NLDASIDNKALFETFSSFGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQAAIDKLNGML 200 Query: 213 ISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATI 392 ++ + + V +R R YV NLP + + L + F + G + +A + Sbjct: 201 MNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVV 260 Query: 393 VYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 545 + D ++G SR FGFV E SA+ ++G + L V A ++ +R Sbjct: 261 MRD-QSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSER 310
>EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (Embryonic| poly(A) binding protein-B) (ePABP-B) (ePAB-B) (XePABP-B) Length = 629 Score = 94.0 bits (232), Expect = 3e-19 Identities = 59/181 (32%), Positives = 95/181 (52%), Gaps = 10/181 (5%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 N D+D +RL ++F G +V+ + SG+SRGFGFV EEA KA+ N + Sbjct: 197 NFGEDMDDKRLKEIFSAFGNTLSVKVMMDN-SGRSRGFGFVNYGNHEEAQKAVTEMNGKE 255 Query: 213 ISGRLLNVNRAAQRGSRVERPPRQFA----------SSFRAYVGNLPWQAEDSRLVQMFS 362 ++GR++ V RA +R R R+F YV NL +D RL + FS Sbjct: 256 VNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFS 315 Query: 363 EHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQ 542 +G + + ++ E G S+GFGFV +S E+ A++ ++G+ + +PL V +A + + Sbjct: 316 PYGTITSTKVM--TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEE 373 Query: 543 R 545 R Sbjct: 374 R 374 Score = 84.0 bits (206), Expect = 3e-16 Identities = 52/171 (30%), Positives = 88/171 (51%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 NL +D++ L F G + +V+ + SRG+GFV T E A++AI+T N Sbjct: 105 NLDDSIDNKALYDTFSAFGDILSCKVVCDEYG--SRGYGFVHFETQEAANRAIQTMNGML 162 Query: 213 ISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATI 392 ++ R + V R R + Y+ N +D RL ++FS G ++ + Sbjct: 163 LNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKV 222 Query: 393 VYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 545 + D +GRSRGFGFV + E+ A++ ++G+E++GR + V A +R +R Sbjct: 223 MMD-NSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKRIER 272 Score = 58.5 bits (140), Expect = 2e-08 Identities = 47/178 (26%), Positives = 85/178 (47%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G+L DV L + F AG + V + + +S G+ ++ +A++A++T N Sbjct: 16 GDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTMNFE 75 Query: 210 DISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNAT 389 I GR + + +QR P + + ++ NL ++ L FS G++++ Sbjct: 76 VIKGRPIRI-MWSQRD-----PGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDILSCK 129 Query: 390 IVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQRGF*CGA 563 +V D E G SRG+GFV ++E + AI ++G ++ R + V R +R GA Sbjct: 130 VVCD-EYG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGA 185
>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated| protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor SF3b 49 kDa subunit) Length = 424 Score = 93.6 bits (231), Expect = 4e-19 Identities = 58/184 (31%), Positives = 98/184 (53%), Gaps = 1/184 (0%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G L V L +LF QAG V + +R +GQ +G+GFV + E+AD AI+ N Sbjct: 18 GGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMI 77 Query: 210 DISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNAT 389 + G+ + VN+A+ ++ ++GNL + ++ L FS G ++ Sbjct: 78 KLYGKPIRVNKASAHNKNLD-------VGANIFIGNLDPEIDEKLLYDTFSAFGVILQTP 130 Query: 390 -IVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQRGF*CGAA 566 I+ D +TG S+G+ F+ AS + D+AI A++GQ + RP+ V+ A ++ +G G+A Sbjct: 131 KIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSA 190 Query: 567 AESM 578 AE + Sbjct: 191 AERL 194 Score = 59.3 bits (142), Expect = 9e-09 Identities = 30/75 (40%), Positives = 47/75 (62%) Frame = +3 Query: 306 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 485 YVG L + + L ++F + G VVN + DR TG+ +G+GFV S+ED D AI ++ Sbjct: 16 YVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMN 75 Query: 486 GQEMDGRPLRVNVAA 530 ++ G+P+RVN A+ Sbjct: 76 MIKLYGKPIRVNKAS 90
>ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB)| Length = 359 Score = 89.7 bits (221), Expect = 6e-18 Identities = 53/172 (30%), Positives = 86/172 (50%), Gaps = 2/172 (1%) Frame = +3 Query: 36 LPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYDI 215 LP ++ E L LF G +E +++ ++ +GQS G+GFV ++A+KAI T N + Sbjct: 46 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 105 Query: 216 SGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIV 395 + + V+ A RP YV LP L Q+FS++G ++ + I+ Sbjct: 106 QTKTIKVSYA--------RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRIL 157 Query: 396 YDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDG--RPLRVNVAAERPQR 545 D+ TG SRG GF+ + + + AI L+GQ+ G P+ V A Q+ Sbjct: 158 VDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQK 209 Score = 58.5 bits (140), Expect = 2e-08 Identities = 52/227 (22%), Positives = 90/227 (39%), Gaps = 57/227 (25%) Frame = +3 Query: 36 LPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMS----------------- 164 LP + + L QLF Q G + + ++ ++ +G SRG GF+ Sbjct: 132 LPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKP 191 Query: 165 -------TIEEADKAIETFNRYDISGRLLNVNRA-----AQRGSRVERP----------- 275 T++ A+ + N+ +S + NR AQ+ R Sbjct: 192 PGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLDNLLNMAYGVKR 251 Query: 276 -----------------PRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDR 404 P + + +V NL A++S L QMF G V N ++ D Sbjct: 252 FSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDF 311 Query: 405 ETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 545 T + +GFGFVTM + ++ AI++L+G + R L+V+ + + Sbjct: 312 NTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHK 358 Score = 50.1 bits (118), Expect = 5e-06 Identities = 27/69 (39%), Positives = 39/69 (56%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 NL D D L Q+F G V +VI + + + +GFGFVTM+ +EA AI + N Y Sbjct: 282 NLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYR 341 Query: 213 ISGRLLNVN 239 + R+L V+ Sbjct: 342 LGDRVLQVS 350
>ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2| Length = 359 Score = 89.7 bits (221), Expect = 6e-18 Identities = 53/172 (30%), Positives = 86/172 (50%), Gaps = 2/172 (1%) Frame = +3 Query: 36 LPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYDI 215 LP ++ E L LF G +E +++ ++ +GQS G+GFV ++A+KAI T N + Sbjct: 46 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 105 Query: 216 SGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIV 395 + + V+ A RP YV LP L Q+FS++G ++ + I+ Sbjct: 106 QTKTIKVSYA--------RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRIL 157 Query: 396 YDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDG--RPLRVNVAAERPQR 545 D+ TG SRG GF+ + + + AI L+GQ+ G P+ V A Q+ Sbjct: 158 VDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQK 209 Score = 58.5 bits (140), Expect = 2e-08 Identities = 52/227 (22%), Positives = 90/227 (39%), Gaps = 57/227 (25%) Frame = +3 Query: 36 LPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMS----------------- 164 LP + + L QLF Q G + + ++ ++ +G SRG GF+ Sbjct: 132 LPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKP 191 Query: 165 -------TIEEADKAIETFNRYDISGRLLNVNRA-----AQRGSRVERP----------- 275 T++ A+ + N+ +S + NR AQ+ R Sbjct: 192 PGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLDNLLNMAYGVKR 251 Query: 276 -----------------PRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDR 404 P + + +V NL A++S L QMF G V N ++ D Sbjct: 252 FSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDF 311 Query: 405 ETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 545 T + +GFGFVTM + ++ AI++L+G + R L+V+ + + Sbjct: 312 NTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHK 358 Score = 50.1 bits (118), Expect = 5e-06 Identities = 27/69 (39%), Positives = 39/69 (56%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 NL D D L Q+F G V +VI + + + +GFGFVTM+ +EA AI + N Y Sbjct: 282 NLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYR 341 Query: 213 ISGRLLNVN 239 + R+L V+ Sbjct: 342 LGDRVLQVS 350 Score = 47.8 bits (112), Expect = 3e-05 Identities = 23/73 (31%), Positives = 39/73 (53%) Frame = +3 Query: 309 VGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDG 488 V LP L +F GE+ + +V D+ TG+S G+GFV +D + AI+ L+G Sbjct: 43 VNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 102 Query: 489 QEMDGRPLRVNVA 527 + + ++V+ A Sbjct: 103 LRLQTKTIKVSYA 115
>ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Hel-N1) Length = 359 Score = 89.7 bits (221), Expect = 6e-18 Identities = 53/172 (30%), Positives = 86/172 (50%), Gaps = 2/172 (1%) Frame = +3 Query: 36 LPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYDI 215 LP ++ E L LF G +E +++ ++ +GQS G+GFV ++A+KAI T N + Sbjct: 46 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 105 Query: 216 SGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIV 395 + + V+ A RP YV LP L Q+FS++G ++ + I+ Sbjct: 106 QTKTIKVSYA--------RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRIL 157 Query: 396 YDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDG--RPLRVNVAAERPQR 545 D+ TG SRG GF+ + + + AI L+GQ+ G P+ V A Q+ Sbjct: 158 VDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQK 209 Score = 58.5 bits (140), Expect = 2e-08 Identities = 52/227 (22%), Positives = 90/227 (39%), Gaps = 57/227 (25%) Frame = +3 Query: 36 LPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMS----------------- 164 LP + + L QLF Q G + + ++ ++ +G SRG GF+ Sbjct: 132 LPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKP 191 Query: 165 -------TIEEADKAIETFNRYDISGRLLNVNRA-----AQRGSRVERP----------- 275 T++ A+ + N+ +S + NR AQ+ R Sbjct: 192 PGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLDNLLNMAYGVKR 251 Query: 276 -----------------PRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDR 404 P + + +V NL A++S L QMF G V N ++ D Sbjct: 252 FSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDF 311 Query: 405 ETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 545 T + +GFGFVTM + ++ AI++L+G + R L+V+ + + Sbjct: 312 NTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHK 358 Score = 50.1 bits (118), Expect = 5e-06 Identities = 27/69 (39%), Positives = 39/69 (56%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 NL D D L Q+F G V +VI + + + +GFGFVTM+ +EA AI + N Y Sbjct: 282 NLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYR 341 Query: 213 ISGRLLNVN 239 + R+L V+ Sbjct: 342 LGDRVLQVS 350 Score = 47.8 bits (112), Expect = 3e-05 Identities = 23/73 (31%), Positives = 39/73 (53%) Frame = +3 Query: 309 VGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDG 488 V LP L +F GE+ + +V D+ TG+S G+GFV +D + AI+ L+G Sbjct: 43 VNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 102 Query: 489 QEMDGRPLRVNVA 527 + + ++V+ A Sbjct: 103 LRLQTKTIKVSYA 115
>ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Mel-N1) Length = 360 Score = 89.7 bits (221), Expect = 6e-18 Identities = 53/172 (30%), Positives = 86/172 (50%), Gaps = 2/172 (1%) Frame = +3 Query: 36 LPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYDI 215 LP ++ E L LF G +E +++ ++ +GQS G+GFV ++A+KAI T N + Sbjct: 46 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 105 Query: 216 SGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIV 395 + + V+ A RP YV LP L Q+FS++G ++ + I+ Sbjct: 106 QTKTIKVSYA--------RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRIL 157 Query: 396 YDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDG--RPLRVNVAAERPQR 545 D+ TG SRG GF+ + + + AI L+GQ+ G P+ V A Q+ Sbjct: 158 VDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQK 209 Score = 55.8 bits (133), Expect = 1e-07 Identities = 28/80 (35%), Positives = 46/80 (57%) Frame = +3 Query: 306 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 485 +V NL A++S L QMF G V N ++ D T + +GFGFVTM + ++ AI++L+ Sbjct: 280 FVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLN 339 Query: 486 GQEMDGRPLRVNVAAERPQR 545 G + R L+V+ + + Sbjct: 340 GYRLGDRVLQVSFKTNKTHK 359 Score = 50.1 bits (118), Expect = 5e-06 Identities = 27/69 (39%), Positives = 39/69 (56%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 NL D D L Q+F G V +VI + + + +GFGFVTM+ +EA AI + N Y Sbjct: 283 NLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYR 342 Query: 213 ISGRLLNVN 239 + R+L V+ Sbjct: 343 LGDRVLQVS 351 Score = 47.8 bits (112), Expect = 3e-05 Identities = 23/73 (31%), Positives = 39/73 (53%) Frame = +3 Query: 309 VGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDG 488 V LP L +F GE+ + +V D+ TG+S G+GFV +D + AI+ L+G Sbjct: 43 VNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 102 Query: 489 QEMDGRPLRVNVA 527 + + ++V+ A Sbjct: 103 LRLQTKTIKVSYA 115
>ELAV3_MOUSE (Q60900) ELAV-like protein 3 (Hu-antigen C) (HuC)| Length = 367 Score = 89.4 bits (220), Expect = 8e-18 Identities = 52/172 (30%), Positives = 85/172 (49%), Gaps = 2/172 (1%) Frame = +3 Query: 36 LPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYDI 215 LP ++ + LF G +E +++ ++ +GQS G+GFV S +ADKAI T N + Sbjct: 46 LPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKL 105 Query: 216 SGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIV 395 + + V+ A RP YV LP + Q+FS++G ++ + I+ Sbjct: 106 QTKTIKVSYA--------RPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRIL 157 Query: 396 YDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDG--RPLRVNVAAERPQR 545 D+ TG SRG GF+ + + + AI L+GQ+ G P+ V A Q+ Sbjct: 158 LDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQK 209 Score = 54.7 bits (130), Expect = 2e-07 Identities = 27/80 (33%), Positives = 47/80 (58%) Frame = +3 Query: 306 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 485 +V NL +A++S L Q+F G V N ++ D T + +GFGFVTM + ++ AI++L+ Sbjct: 287 FVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLN 346 Query: 486 GQEMDGRPLRVNVAAERPQR 545 G + R L+V+ + + Sbjct: 347 GYRLGERVLQVSFKTSKQHK 366 Score = 48.5 bits (114), Expect = 2e-05 Identities = 27/69 (39%), Positives = 39/69 (56%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 NL + D L QLF G V +VI + + + +GFGFVTM+ +EA AI + N Y Sbjct: 290 NLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYR 349 Query: 213 ISGRLLNVN 239 + R+L V+ Sbjct: 350 LGERVLQVS 358 Score = 47.4 bits (111), Expect = 3e-05 Identities = 22/73 (30%), Positives = 39/73 (53%) Frame = +3 Query: 309 VGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDG 488 V LP +F G++ + +V D+ TG+S G+GFV + D D AI+ L+G Sbjct: 43 VNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNG 102 Query: 489 QEMDGRPLRVNVA 527 ++ + ++V+ A Sbjct: 103 LKLQTKTIKVSYA 115
>ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)| Length = 326 Score = 89.4 bits (220), Expect = 8e-18 Identities = 50/171 (29%), Positives = 85/171 (49%), Gaps = 2/171 (1%) Frame = +3 Query: 36 LPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYDI 215 LP ++ + L LF G VE A++I ++ +G S G+GFV T ++A++AI T N + Sbjct: 27 LPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRL 86 Query: 216 SGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIV 395 + + V+ A RP + Y+ LP + MFS G ++N+ ++ Sbjct: 87 QSKTIKVSYA--------RPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVL 138 Query: 396 YDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDG--RPLRVNVAAERPQ 542 D+ TG SRG F+ + + + AI++ +G + G P+ V AA Q Sbjct: 139 VDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFAANPNQ 189 Score = 64.3 bits (155), Expect = 3e-10 Identities = 52/214 (24%), Positives = 91/214 (42%), Gaps = 44/214 (20%) Frame = +3 Query: 36 LPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYDI 215 LP + + + +F + G + + V+ ++ +G SRG F+ EA++AI +FN + Sbjct: 113 LPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKP 172 Query: 216 SGR-------------------LLN-------------VNRAAQR------------GSR 263 G LL+ V+ AQR G Sbjct: 173 PGSSEPITVKFAANPNQNKNVALLSQLYHSPARRFGGPVHHQAQRFRFSPMGVDHMSGLS 232 Query: 264 VERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTM 443 P +S + ++ NL A++ L QMF G V N ++ D T + +GFGFVTM Sbjct: 233 GVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTM 292 Query: 444 ASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 545 + E+ AI++L+G + + L+V+ + + Sbjct: 293 TNYEEAAMAIASLNGYRLGDKILQVSFKTNKSHK 326 Score = 50.1 bits (118), Expect = 5e-06 Identities = 27/69 (39%), Positives = 39/69 (56%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 NL D D L Q+F G V +VI + + + +GFGFVTM+ EEA AI + N Y Sbjct: 250 NLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYR 309 Query: 213 ISGRLLNVN 239 + ++L V+ Sbjct: 310 LGDKILQVS 318 Score = 49.7 bits (117), Expect = 7e-06 Identities = 24/73 (32%), Positives = 40/73 (54%) Frame = +3 Query: 309 VGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDG 488 V LP L +FS GEV +A ++ D+ G S G+GFV + +D + AI+ L+G Sbjct: 24 VNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNG 83 Query: 489 QEMDGRPLRVNVA 527 + + ++V+ A Sbjct: 84 LRLQSKTIKVSYA 96
>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein| 1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A) (PABP 1-A) (xPABP1-A) Length = 633 Score = 89.4 bits (220), Expect = 8e-18 Identities = 56/181 (30%), Positives = 98/181 (54%), Gaps = 10/181 (5%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 N D++ ERL ++F + G +V+ + ++G+S+GFGFV+ E+A KA++ N D Sbjct: 197 NFGDDMNDERLKEMFGKYGPALSVKVMTD-DNGKSKGFGFVSFERHEDAQKAVDEMNGKD 255 Query: 213 ISGRLLNVNRAAQRGSRVERPPRQFA----------SSFRAYVGNLPWQAEDSRLVQMFS 362 ++G+ + V RA ++ R R+F YV NL +D RL + F Sbjct: 256 MNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFL 315 Query: 363 EHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQ 542 G + +A ++ E GRS+GFGFV +S E+ A++ ++G+ + +PL V +A + + Sbjct: 316 PFGTITSAKVM--MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373 Query: 543 R 545 R Sbjct: 374 R 374 Score = 82.4 bits (202), Expect = 1e-15 Identities = 50/171 (29%), Positives = 90/171 (52%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 NL +D++ L F G + +V+ + E+G S+G+GFV T E A++AI+ N Sbjct: 105 NLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIDKMNGML 162 Query: 213 ISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATI 392 ++ R + V R R R + Y+ N D RL +MF ++G ++ + Sbjct: 163 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKV 222 Query: 393 VYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 545 + D + G+S+GFGFV+ ED A+ ++G++M+G+ + V A ++ +R Sbjct: 223 MTD-DNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVER 272 Score = 59.3 bits (142), Expect = 9e-09 Identities = 48/181 (26%), Positives = 86/181 (47%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G+L DV L + F AG + V + + +S G+ +V +A++A++T N Sbjct: 16 GDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFD 75 Query: 210 DISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNAT 389 I GR + + +QR P + + ++ NL ++ L FS G +++ Sbjct: 76 VIKGRPVRI-MWSQRD-----PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 129 Query: 390 IVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQRGF*CGAAA 569 +V D E G S+G+GFV ++E + AI ++G ++ R + V R +R GA A Sbjct: 130 VVCD-ENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARA 187 Query: 570 E 572 + Sbjct: 188 K 188 Score = 46.2 bits (108), Expect = 8e-05 Identities = 30/85 (35%), Positives = 45/85 (52%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 NL +D ERL + F G + A+V+ E G+S+GFGFV S+ EEA KA+ N Sbjct: 300 NLDDGIDDERLRKEFLPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRI 357 Query: 213 ISGRLLNVNRAAQRGSRVERPPRQF 287 ++ + L V A ++ R Q+ Sbjct: 358 VATKPLYVALAQRKEERQAHLTNQY 382
>GAR2_SCHPO (P41891) Protein gar2| Length = 500 Score = 89.4 bits (220), Expect = 8e-18 Identities = 56/184 (30%), Positives = 98/184 (53%), Gaps = 11/184 (5%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G L ++VD + L Q F++ G + A VI + +SG+S+G+G+V T E A A+ Sbjct: 268 GRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTK 327 Query: 210 DISGRLLNVNRAAQRGSRVERPPRQFASSF---------RAYVGNLPWQAEDSRLVQMFS 362 +I GR++N++ + R + + +Q A +F +VGNL + A + L F Sbjct: 328 EIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSDTVFVGNLSFNATEDDLSTAFG 387 Query: 363 EHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA--LDGQEMDGRPLRVNVAAER 536 G++ + + D ++GR +GFG+VT + D+DSA ++G + GRP R++ + R Sbjct: 388 GCGDIQSIRLPTDPQSGRLKGFGYVTFS---DIDSAKKCVEMNGHFIAGRPCRLDFSTPR 444 Query: 537 PQRG 548 G Sbjct: 445 TGGG 448 Score = 70.1 bits (170), Expect = 5e-12 Identities = 30/97 (30%), Positives = 59/97 (60%) Frame = +3 Query: 249 QRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGF 428 +R +++ +P + + +VG L W +D L Q F E+G +V A ++ D ++GRS+G+ Sbjct: 247 ERPAKITKPSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGY 306 Query: 429 GFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERP 539 G+V + E +A++A +E+DGR + ++++ RP Sbjct: 307 GYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPRP 343
>NUCL_MACFA (Q4R4J7) Nucleolin| Length = 710 Score = 89.0 bits (219), Expect = 1e-17 Identities = 54/173 (31%), Positives = 92/173 (53%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 NL Y E L ++F++A ++V + ++G+S+G+ F+ ++ E+A +A+ + N+ + Sbjct: 492 NLSYSATEETLQEVFEKATFIKVPQ----NQNGKSKGYAFIEFASFEDAKEALNSCNKRE 547 Query: 213 ISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATI 392 I GR + + RGS P + S +V L + L + F V A I Sbjct: 548 IEGRAIRLELQGPRGS----PNARSQPSKTLFVKGLSEDTTEETLKESFDGS---VRARI 600 Query: 393 VYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQRGF 551 V DRETG S+GFGFV S+ED +A A++ E+DG + ++ A + + GF Sbjct: 601 VTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGF 653 Score = 68.6 bits (166), Expect = 1e-11 Identities = 44/172 (25%), Positives = 83/172 (48%), Gaps = 4/172 (2%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 NLPY V + L ++F+ A AE+ + G+S+G ++ T +A+K E + Sbjct: 399 NLPYKVTQDELKEVFEDA-----AEIRLVSKDGKSKGIAYIEFKTEADAEKTFEEKQGTE 453 Query: 213 ISGRLLNVNRAAQRGS----RVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVV 380 I GR +++ ++G R + S + NL + A + L ++F E Sbjct: 454 IDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVF----EKA 509 Query: 381 NATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAER 536 V + G+S+G+ F+ AS ED A+++ + +E++GR +R+ + R Sbjct: 510 TFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPR 561 Score = 52.0 bits (123), Expect = 1e-06 Identities = 31/138 (22%), Positives = 63/138 (45%) Frame = +3 Query: 129 GQSRGFGFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAY 308 G +R FG+V + E+ +KA+E + G + + + + S+ ER R + Sbjct: 344 GMTRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGKDSKKERDARTLLAK---- 398 Query: 309 VGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDG 488 NLP++ L ++F + E+ + + G+S+G ++ ++ D + G Sbjct: 399 --NLPYKVTQDELKEVFEDAAEIRLVS-----KDGKSKGIAYIEFKTEADAEKTFEEKQG 451 Query: 489 QEMDGRPLRVNVAAERPQ 542 E+DGR + + E+ Q Sbjct: 452 TEIDGRSISLYYTGEKGQ 469 Score = 32.7 bits (73), Expect = 0.89 Identities = 25/93 (26%), Positives = 43/93 (46%) Frame = +3 Query: 240 RAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRS 419 +AA + + + ++F +VGNL + L S+ N V D G + Sbjct: 288 KAAPEAKKQKVEGTEPTTAFNLFVGNLNFNKSAPELKTGISDVF-AKNDLAVVDVRIGMT 346 Query: 420 RGFGFVTMASKEDLDSAISALDGQEMDGRPLRV 518 R FG+V S EDL+ A+ L G ++ G +++ Sbjct: 347 RKFGYVDFESAEDLEKALE-LTGLKVFGNEIKL 378
>NUCL_MESAU (P08199) Nucleolin (Protein C23)| Length = 713 Score = 89.0 bits (219), Expect = 1e-17 Identities = 54/173 (31%), Positives = 91/173 (52%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 NL Y E L ++F++A ++V + + G+S+G+ F+ ++ E+A +A+ + N+ + Sbjct: 491 NLSYSATEETLQEVFEKATFIKVPQ----NQQGKSKGYAFIEFASFEDAKEALNSCNKME 546 Query: 213 ISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATI 392 I GR + + RGS P + S +V L + L + F V A I Sbjct: 547 IEGRTIRLELQGPRGS----PNARSQPSKTLFVKGLSEDTTEETLKESFEGS---VRARI 599 Query: 393 VYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQRGF 551 V DRETG S+GFGFV S+ED +A A++ E+DG + ++ A + + GF Sbjct: 600 VTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGF 652 Score = 48.5 bits (114), Expect = 2e-05 Identities = 32/140 (22%), Positives = 64/140 (45%) Frame = +3 Query: 126 SGQSRGFGFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRA 305 +G +R FG+V + E+ +KA+E + G + + + R S+ R R + Sbjct: 343 TGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGRDSKKVRAARTLLAK--- 398 Query: 306 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 485 NL + + L ++F + E+ + + G+S+G ++ S+ D + + Sbjct: 399 ---NLSFNITEDELKEVFEDALEIRLVS-----QDGKSKGIAYIEFKSEADAEKNLEEKQ 450 Query: 486 GQEMDGRPLRVNVAAERPQR 545 G E+DGR + + E+ QR Sbjct: 451 GAEIDGRSVSLYYTGEKGQR 470 Score = 33.9 bits (76), Expect = 0.40 Identities = 24/74 (32%), Positives = 36/74 (48%) Frame = +3 Query: 297 FRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS 476 F ++GNL + L SE N V D TG +R FG+V S EDL+ A+ Sbjct: 307 FNLFIGNLNPNKSVAELKVAISEPF-AKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE 365 Query: 477 ALDGQEMDGRPLRV 518 L G ++ G +++ Sbjct: 366 -LTGLKVFGNEIKL 378
>ELAV3_HUMAN (Q14576) ELAV-like protein 3 (Hu-antigen C) (HuC) (Paraneoplastic| cerebellar degeneration-associated antigen) (Paraneoplastic limbic encephalitis antigen 21) Length = 367 Score = 89.0 bits (219), Expect = 1e-17 Identities = 52/172 (30%), Positives = 85/172 (49%), Gaps = 2/172 (1%) Frame = +3 Query: 36 LPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYDI 215 LP ++ + LF G +E +++ ++ +GQS G+GFV S +ADKAI T N + Sbjct: 46 LPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKL 105 Query: 216 SGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIV 395 + + V+ A RP YV LP + Q+FS++G ++ + I+ Sbjct: 106 QTKTIKVSYA--------RPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRIL 157 Query: 396 YDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDG--RPLRVNVAAERPQR 545 D+ TG SRG GF+ + + + AI L+GQ+ G P+ V A Q+ Sbjct: 158 VDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQK 209 Score = 54.7 bits (130), Expect = 2e-07 Identities = 27/80 (33%), Positives = 47/80 (58%) Frame = +3 Query: 306 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 485 +V NL +A++S L Q+F G V N ++ D T + +GFGFVTM + ++ AI++L+ Sbjct: 287 FVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLN 346 Query: 486 GQEMDGRPLRVNVAAERPQR 545 G + R L+V+ + + Sbjct: 347 GYRLGERVLQVSFKTSKQHK 366 Score = 48.5 bits (114), Expect = 2e-05 Identities = 27/69 (39%), Positives = 39/69 (56%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 NL + D L QLF G V +VI + + + +GFGFVTM+ +EA AI + N Y Sbjct: 290 NLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYR 349 Query: 213 ISGRLLNVN 239 + R+L V+ Sbjct: 350 LGERVLQVS 358 Score = 47.4 bits (111), Expect = 3e-05 Identities = 22/73 (30%), Positives = 39/73 (53%) Frame = +3 Query: 309 VGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDG 488 V LP +F G++ + +V D+ TG+S G+GFV + D D AI+ L+G Sbjct: 43 VNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNG 102 Query: 489 QEMDGRPLRVNVA 527 ++ + ++V+ A Sbjct: 103 LKLQTKTIKVSYA 115
>ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (Elav-like| generic protein) (MelG) Length = 326 Score = 89.0 bits (219), Expect = 1e-17 Identities = 51/171 (29%), Positives = 84/171 (49%), Gaps = 2/171 (1%) Frame = +3 Query: 36 LPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYDI 215 LP ++ E L LF G VE A++I ++ +G S G+GFV T ++A++AI T N + Sbjct: 27 LPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTLNGLRL 86 Query: 216 SGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIV 395 + + V+ A RP + Y+ LP + MFS G ++N+ ++ Sbjct: 87 QSKTIKVSYA--------RPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVL 138 Query: 396 YDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDG--RPLRVNVAAERPQ 542 D+ TG SRG F+ + + + AI++ G + G P+ V AA Q Sbjct: 139 VDQTTGLSRGVAFIRFDKRSEAEEAITSFIGHKPPGSSEPITVKFAANPNQ 189 Score = 60.5 bits (145), Expect = 4e-09 Identities = 51/214 (23%), Positives = 90/214 (42%), Gaps = 44/214 (20%) Frame = +3 Query: 36 LPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYDI 215 LP + + + +F + G + + V+ ++ +G SRG F+ EA++AI +F + Sbjct: 113 LPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFIGHKP 172 Query: 216 SGR-------------------LLN-------------VNRAAQR------------GSR 263 G LL+ V+ AQR G Sbjct: 173 PGSSEPITVKFAANPNQNKNMALLSQLYHSPARRFGGPVHHQAQRFRFSPMGVDHMSGIS 232 Query: 264 VERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTM 443 P +S + ++ NL A++ L QMF G V N ++ D T + +GFGFVTM Sbjct: 233 GVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTM 292 Query: 444 ASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 545 + E+ AI++L+G + + L+V+ + + Sbjct: 293 TNYEESAMAIASLNGYRLGDKILQVSFKTNKSHK 326 Score = 50.8 bits (120), Expect = 3e-06 Identities = 25/73 (34%), Positives = 40/73 (54%) Frame = +3 Query: 309 VGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDG 488 V LP L +FS GEV +A ++ D+ G S G+GFV + +D + AIS L+G Sbjct: 24 VNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTLNG 83 Query: 489 QEMDGRPLRVNVA 527 + + ++V+ A Sbjct: 84 LRLQSKTIKVSYA 96 Score = 48.9 bits (115), Expect = 1e-05 Identities = 26/69 (37%), Positives = 39/69 (56%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 NL D D L Q+F G V +VI + + + +GFGFVTM+ EE+ AI + N Y Sbjct: 250 NLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEESAMAIASLNGYR 309 Query: 213 ISGRLLNVN 239 + ++L V+ Sbjct: 310 LGDKILQVS 318
>NUCL_PONPY (Q5RF26) Nucleolin| Length = 711 Score = 89.0 bits (219), Expect = 1e-17 Identities = 54/173 (31%), Positives = 92/173 (53%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 NL Y E L ++F++A ++V + ++G+S+G+ F+ ++ E+A +A+ + N+ + Sbjct: 493 NLSYSATEETLQEVFEKATFIKVPQ----NQNGKSKGYAFIEFASFEDAKEALNSCNKRE 548 Query: 213 ISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATI 392 I GR + + RGS P + S +V L + L + F V A I Sbjct: 549 IEGRAIRLELQGPRGS----PNARSQPSKTLFVKGLSEDTTEETLKESFDGS---VRARI 601 Query: 393 VYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQRGF 551 V DRETG S+GFGFV S+ED +A A++ E+DG + ++ A + + GF Sbjct: 602 VTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGF 654 Score = 68.6 bits (166), Expect = 1e-11 Identities = 44/172 (25%), Positives = 83/172 (48%), Gaps = 4/172 (2%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 NLPY V + L ++F+ A AE+ + G+S+G ++ T +A+K E + Sbjct: 400 NLPYKVTQDELKEVFEDA-----AEIRLVSKDGKSKGIAYIEFKTEADAEKTFEEKQGTE 454 Query: 213 ISGRLLNVNRAAQRGS----RVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVV 380 I GR +++ ++G R + S + NL + A + L ++F E Sbjct: 455 IDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVF----EKA 510 Query: 381 NATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAER 536 V + G+S+G+ F+ AS ED A+++ + +E++GR +R+ + R Sbjct: 511 TFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPR 562 Score = 52.0 bits (123), Expect = 1e-06 Identities = 31/138 (22%), Positives = 63/138 (45%) Frame = +3 Query: 129 GQSRGFGFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAY 308 G +R FG+V + E+ +KA+E + G + + + + S+ ER R + Sbjct: 345 GMTRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGKDSKKERDARTLLAK---- 399 Query: 309 VGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDG 488 NLP++ L ++F + E+ + + G+S+G ++ ++ D + G Sbjct: 400 --NLPYKVTQDELKEVFEDAAEIRLVS-----KDGKSKGIAYIEFKTEADAEKTFEEKQG 452 Query: 489 QEMDGRPLRVNVAAERPQ 542 E+DGR + + E+ Q Sbjct: 453 TEIDGRSISLYYTGEKGQ 470 Score = 32.7 bits (73), Expect = 0.89 Identities = 25/93 (26%), Positives = 43/93 (46%) Frame = +3 Query: 240 RAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRS 419 +AA + + + ++F +VGNL + L S+ N V D G + Sbjct: 289 KAAPEAKKQKVEGTEPTTAFNLFVGNLNFNKSAPELKTGISDVF-AKNDLAVVDVRIGMT 347 Query: 420 RGFGFVTMASKEDLDSAISALDGQEMDGRPLRV 518 R FG+V S EDL+ A+ L G ++ G +++ Sbjct: 348 RKFGYVDFESAEDLEKALE-LTGLKVFGNEIKL 379
>NUCL_HUMAN (P19338) Nucleolin (Protein C23)| Length = 709 Score = 89.0 bits (219), Expect = 1e-17 Identities = 54/173 (31%), Positives = 92/173 (53%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 NL Y E L ++F++A ++V + ++G+S+G+ F+ ++ E+A +A+ + N+ + Sbjct: 491 NLSYSATEETLQEVFEKATFIKVPQ----NQNGKSKGYAFIEFASFEDAKEALNSCNKRE 546 Query: 213 ISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATI 392 I GR + + RGS P + S +V L + L + F V A I Sbjct: 547 IEGRAIRLELQGPRGS----PNARSQPSKTLFVKGLSEDTTEETLKESFDGS---VRARI 599 Query: 393 VYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQRGF 551 V DRETG S+GFGFV S+ED +A A++ E+DG + ++ A + + GF Sbjct: 600 VTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGF 652 Score = 68.6 bits (166), Expect = 1e-11 Identities = 44/172 (25%), Positives = 83/172 (48%), Gaps = 4/172 (2%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 NLPY V + L ++F+ A AE+ + G+S+G ++ T +A+K E + Sbjct: 398 NLPYKVTQDELKEVFEDA-----AEIRLVSKDGKSKGIAYIEFKTEADAEKTFEEKQGTE 452 Query: 213 ISGRLLNVNRAAQRGS----RVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVV 380 I GR +++ ++G R + S + NL + A + L ++F E Sbjct: 453 IDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVF----EKA 508 Query: 381 NATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAER 536 V + G+S+G+ F+ AS ED A+++ + +E++GR +R+ + R Sbjct: 509 TFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPR 560 Score = 52.0 bits (123), Expect = 1e-06 Identities = 31/138 (22%), Positives = 63/138 (45%) Frame = +3 Query: 129 GQSRGFGFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAY 308 G +R FG+V + E+ +KA+E + G + + + + S+ ER R + Sbjct: 343 GMTRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGKDSKKERDARTLLAK---- 397 Query: 309 VGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDG 488 NLP++ L ++F + E+ + + G+S+G ++ ++ D + G Sbjct: 398 --NLPYKVTQDELKEVFEDAAEIRLVS-----KDGKSKGIAYIEFKTEADAEKTFEEKQG 450 Query: 489 QEMDGRPLRVNVAAERPQ 542 E+DGR + + E+ Q Sbjct: 451 TEIDGRSISLYYTGEKGQ 468 Score = 32.7 bits (73), Expect = 0.89 Identities = 25/93 (26%), Positives = 43/93 (46%) Frame = +3 Query: 240 RAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRS 419 +AA + + + ++F +VGNL + L S+ N V D G + Sbjct: 287 KAAPEAKKQKVEGTEPTTAFNLFVGNLNFNKSAPELKTGISDVF-AKNDLAVVDVRIGMT 345 Query: 420 RGFGFVTMASKEDLDSAISALDGQEMDGRPLRV 518 R FG+V S EDL+ A+ L G ++ G +++ Sbjct: 346 RKFGYVDFESAEDLEKALE-LTGLKVFGNEIKL 377
>ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 373 Score = 88.6 bits (218), Expect = 1e-17 Identities = 52/172 (30%), Positives = 85/172 (49%), Gaps = 2/172 (1%) Frame = +3 Query: 36 LPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYDI 215 LP ++ E LF G +E +++ ++ +GQS G+GFV ++A+KAI T N + Sbjct: 46 LPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 105 Query: 216 SGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIV 395 + + V+ A RP YV LP L Q+FS++G ++ + I+ Sbjct: 106 QTKTIKVSYA--------RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRIL 157 Query: 396 YDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDG--RPLRVNVAAERPQR 545 D+ TG SRG GF+ + + + AI L+GQ+ G P+ V A Q+ Sbjct: 158 VDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQK 209 Score = 52.8 bits (125), Expect = 8e-07 Identities = 27/90 (30%), Positives = 49/90 (54%) Frame = +3 Query: 276 PRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKE 455 P + + +V NL +++S L Q+F G V N ++ D T + +GFGFVTM + + Sbjct: 283 PGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYD 342 Query: 456 DLDSAISALDGQEMDGRPLRVNVAAERPQR 545 + AI++L+G + R L+V+ + + Sbjct: 343 EAAMAIASLNGYRLGDRVLQVSFKTNKAHK 372 Score = 50.4 bits (119), Expect = 4e-06 Identities = 28/69 (40%), Positives = 39/69 (56%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 NL D D L QLF G V +VI + + + +GFGFVTM+ +EA AI + N Y Sbjct: 296 NLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYR 355 Query: 213 ISGRLLNVN 239 + R+L V+ Sbjct: 356 LGDRVLQVS 364 Score = 45.8 bits (107), Expect = 1e-04 Identities = 22/73 (30%), Positives = 38/73 (52%) Frame = +3 Query: 309 VGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDG 488 V LP +F GE+ + +V D+ TG+S G+GFV +D + AI+ L+G Sbjct: 43 VNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 102 Query: 489 QEMDGRPLRVNVA 527 + + ++V+ A Sbjct: 103 LRLQTKTIKVSYA 115
>ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 380 Score = 88.6 bits (218), Expect = 1e-17 Identities = 52/172 (30%), Positives = 85/172 (49%), Gaps = 2/172 (1%) Frame = +3 Query: 36 LPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYDI 215 LP ++ E LF G +E +++ ++ +GQS G+GFV ++A+KAI T N + Sbjct: 53 LPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 112 Query: 216 SGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIV 395 + + V+ A RP YV LP L Q+FS++G ++ + I+ Sbjct: 113 QTKTIKVSYA--------RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRIL 164 Query: 396 YDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDG--RPLRVNVAAERPQR 545 D+ TG SRG GF+ + + + AI L+GQ+ G P+ V A Q+ Sbjct: 165 VDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQK 216 Score = 52.8 bits (125), Expect = 8e-07 Identities = 27/90 (30%), Positives = 49/90 (54%) Frame = +3 Query: 276 PRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKE 455 P + + +V NL +++S L Q+F G V N ++ D T + +GFGFVTM + + Sbjct: 290 PGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYD 349 Query: 456 DLDSAISALDGQEMDGRPLRVNVAAERPQR 545 + AI++L+G + R L+V+ + + Sbjct: 350 EAAMAIASLNGYRLGDRVLQVSFKTNKAHK 379 Score = 50.4 bits (119), Expect = 4e-06 Identities = 28/69 (40%), Positives = 39/69 (56%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 NL D D L QLF G V +VI + + + +GFGFVTM+ +EA AI + N Y Sbjct: 303 NLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYR 362 Query: 213 ISGRLLNVN 239 + R+L V+ Sbjct: 363 LGDRVLQVS 371 Score = 45.8 bits (107), Expect = 1e-04 Identities = 22/73 (30%), Positives = 38/73 (52%) Frame = +3 Query: 309 VGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDG 488 V LP +F GE+ + +V D+ TG+S G+GFV +D + AI+ L+G Sbjct: 50 VNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 109 Query: 489 QEMDGRPLRVNVA 527 + + ++V+ A Sbjct: 110 LRLQTKTIKVSYA 122
>ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 385 Score = 88.6 bits (218), Expect = 1e-17 Identities = 52/172 (30%), Positives = 85/172 (49%), Gaps = 2/172 (1%) Frame = +3 Query: 36 LPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYDI 215 LP ++ E LF G +E +++ ++ +GQS G+GFV ++A+KAI T N + Sbjct: 58 LPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 117 Query: 216 SGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIV 395 + + V+ A RP YV LP L Q+FS++G ++ + I+ Sbjct: 118 QTKTIKVSYA--------RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRIL 169 Query: 396 YDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDG--RPLRVNVAAERPQR 545 D+ TG SRG GF+ + + + AI L+GQ+ G P+ V A Q+ Sbjct: 170 VDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQK 221 Score = 52.8 bits (125), Expect = 8e-07 Identities = 27/90 (30%), Positives = 49/90 (54%) Frame = +3 Query: 276 PRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKE 455 P + + +V NL +++S L Q+F G V N ++ D T + +GFGFVTM + + Sbjct: 295 PGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYD 354 Query: 456 DLDSAISALDGQEMDGRPLRVNVAAERPQR 545 + AI++L+G + R L+V+ + + Sbjct: 355 EAAMAIASLNGYRLGDRVLQVSFKTNKAHK 384 Score = 50.4 bits (119), Expect = 4e-06 Identities = 28/69 (40%), Positives = 39/69 (56%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 NL D D L QLF G V +VI + + + +GFGFVTM+ +EA AI + N Y Sbjct: 308 NLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYR 367 Query: 213 ISGRLLNVN 239 + R+L V+ Sbjct: 368 LGDRVLQVS 376 Score = 45.8 bits (107), Expect = 1e-04 Identities = 22/73 (30%), Positives = 38/73 (52%) Frame = +3 Query: 309 VGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDG 488 V LP +F GE+ + +V D+ TG+S G+GFV +D + AI+ L+G Sbjct: 55 VNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 114 Query: 489 QEMDGRPLRVNVA 527 + + ++V+ A Sbjct: 115 LRLQTKTIKVSYA 127
>NUCL_RAT (P13383) Nucleolin (Protein C23)| Length = 712 Score = 87.4 bits (215), Expect = 3e-17 Identities = 54/173 (31%), Positives = 90/173 (52%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 NL Y E L ++F++A ++V + G+S+G+ F+ ++ E+A +A+ + N+ + Sbjct: 494 NLSYSATEETLQEVFEKATFIKVPQ----NPHGKSKGYAFIEFASFEDAKEALNSCNKME 549 Query: 213 ISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATI 392 I GR + + RGS P + S +V L + L + F V A I Sbjct: 550 IEGRTIRLELQGPRGS----PNARSQPSKTLFVKGLSEDTTEETLKESFEGS---VRARI 602 Query: 393 VYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQRGF 551 V DRETG S+GFGFV S+ED +A A++ E+DG + ++ A + + GF Sbjct: 603 VTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGF 655 Score = 50.1 bits (118), Expect = 5e-06 Identities = 33/140 (23%), Positives = 64/140 (45%) Frame = +3 Query: 126 SGQSRGFGFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRA 305 +G +R FG+V + E+ +KA+E + G + + + R S+ R R + Sbjct: 346 TGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGRDSKKVRAARTLLAK--- 401 Query: 306 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 485 NL + + L ++F + E+ + + GRS+G ++ S+ D + + Sbjct: 402 ---NLSFNITEDELKEVFEDAVEIRLVS-----QDGRSKGIAYIEFKSEADAEKNLEEKQ 453 Query: 486 GQEMDGRPLRVNVAAERPQR 545 G E+DGR + + E+ QR Sbjct: 454 GAEIDGRSVSLYYTGEKGQR 473 Score = 32.0 bits (71), Expect = 1.5 Identities = 23/74 (31%), Positives = 35/74 (47%) Frame = +3 Query: 297 FRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS 476 F ++GNL + L SE N D TG +R FG+V S EDL+ A+ Sbjct: 310 FNLFIGNLNPNKSVAELKVAISELF-AKNDLAAVDVRTGTNRKFGYVDFESAEDLEKALE 368 Query: 477 ALDGQEMDGRPLRV 518 L G ++ G +++ Sbjct: 369 -LTGLKVFGNEIKL 381
>PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 87.4 bits (215), Expect = 3e-17 Identities = 56/178 (31%), Positives = 90/178 (50%), Gaps = 10/178 (5%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 N+ D+D E+L +LF + G E +VI + SG+S+GFGFV T E A KA+ + Sbjct: 205 NIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKS 263 Query: 213 ISGRLLNVNRAAQRGSRVERPPRQF----------ASSFRAYVGNLPWQAEDSRLVQMFS 362 I G++L V RA ++ R+ R+F Y+ NL D +L + FS Sbjct: 264 IDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFS 323 Query: 363 EHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAER 536 G + A ++ E G+ +GFG V +S E+ A+ ++G+ + +PL V + R Sbjct: 324 SFGSISRAKVM--MEVGQGKGFGVVCFSSFEEATKAVDEMNGRVVGSKPLHVTLGQAR 379 Score = 67.8 bits (164), Expect = 3e-11 Identities = 47/172 (27%), Positives = 85/172 (49%), Gaps = 1/172 (0%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 NL +D+ L LF G + +V+ + S+G+ +V ++ A++AI N Sbjct: 112 NLDKSIDNRALFYLFSAFGNILSCKVVC--DDNGSKGYAYVHFDSLAAANRAIWHMNGVR 169 Query: 213 ISGRLLNVNRAAQRGSRV-ERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNAT 389 ++ R + V R R E R A+ +V N+ +D +L ++F E+G + Sbjct: 170 LNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVK 229 Query: 390 IVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 545 ++ D +G+S+GFGFV + E A+ L G+ +DG+ L V A ++ +R Sbjct: 230 VIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIER 280 Score = 32.0 bits (71), Expect = 1.5 Identities = 18/71 (25%), Positives = 33/71 (46%) Frame = +3 Query: 306 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 485 YVG+L + L + F G + I D T G+G+V D + A++ ++ Sbjct: 21 YVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMN 80 Query: 486 GQEMDGRPLRV 518 ++G+P R+ Sbjct: 81 FDLINGKPFRL 91
>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 668 Score = 87.4 bits (215), Expect = 3e-17 Identities = 56/181 (30%), Positives = 92/181 (50%), Gaps = 10/181 (5%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 NLP ++ + L + F + G + A V+ +SG SR FGFV + E A A+E N Sbjct: 231 NLPKEITDDELKKTFGKYGDISSA-VVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGIS 289 Query: 213 ISGRLLNVNRAAQRGSRVERPPRQF----------ASSFRAYVGNLPWQAEDSRLVQMFS 362 + +L V RA ++ R E R+F Y+ NL D +L +MFS Sbjct: 290 LGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFS 349 Query: 363 EHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQ 542 E+G V + ++ + + G SRGFGFV ++ E+ A+ ++G+ + +PL V +A + + Sbjct: 350 EYGNVTSCKVMMNSQ-GLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQRKEE 408 Query: 543 R 545 R Sbjct: 409 R 409 Score = 73.2 bits (178), Expect = 6e-13 Identities = 48/171 (28%), Positives = 81/171 (47%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 NL +D++ L + F G + +V + G+S+G+GFV E A AI+ N Sbjct: 138 NLDASIDNKALYETFSSFGTILSCKVAMD-VVGRSKGYGFVQFEKEETAQAAIDKLNGML 196 Query: 213 ISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATI 392 ++ + + V +R R S YV NLP + D L + F ++G++ +A + Sbjct: 197 LNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVV 256 Query: 393 VYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 545 + D ++G SR FGFV S E A+ ++G + L V A ++ R Sbjct: 257 MKD-QSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDR 306
>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-binding protein| PUB1 (ARS consensus-binding protein ACBP-60) (Poly(U)-binding protein) (Poly uridylate-binding protein) Length = 452 Score = 87.0 bits (214), Expect = 4e-17 Identities = 49/171 (28%), Positives = 94/171 (54%), Gaps = 2/171 (1%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 GNL + + L Q F G + +++ ++ + ++ + FV +A+ A++T N Sbjct: 79 GNLDKAITEDILKQYFQVGGPIANIKIMIDKNN-KNVNYAFVEYHQSHDANIALQTLNGK 137 Query: 210 DISGRLLNVNRAAQRGSRVERPPRQFAS--SFRAYVGNLPWQAEDSRLVQMFSEHGEVVN 383 I ++ +N A Q +Q +S +F +VG+L +D L F + ++ Sbjct: 138 QIENNIVKINWAFQS--------QQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLS 189 Query: 384 ATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAER 536 +++D +TG SRG+GFV+ S++D +A+ ++ GQ+++GRPLR+N AA+R Sbjct: 190 GHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKR 240 Score = 32.0 bits (71), Expect = 1.5 Identities = 22/78 (28%), Positives = 33/78 (42%) Frame = +3 Query: 303 AYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISAL 482 AY+GN+P A ++ L+ +F G + D + +G F+ + E I AL Sbjct: 342 AYIGNIPHFATEADLIPLFQNFG------FILDFKHYPEKGCCFIKYDTHEQAAVCIVAL 395 Query: 483 DGQEMDGRPLRVNVAAER 536 GR LR ER Sbjct: 396 ANFPFQGRNLRTGWGKER 413
>PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 87.0 bits (214), Expect = 4e-17 Identities = 56/178 (31%), Positives = 90/178 (50%), Gaps = 10/178 (5%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 N+ D+D E+L +LF + G E +VI + SG+S+GFGFV T E A KA+ + Sbjct: 205 NIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKS 263 Query: 213 ISGRLLNVNRAAQRGSRVERPPRQF----------ASSFRAYVGNLPWQAEDSRLVQMFS 362 I G++L V RA ++ R+ R+F Y+ NL D +L + FS Sbjct: 264 IDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFS 323 Query: 363 EHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAER 536 G + A ++ E G+ +GFG V +S E+ A+ ++G+ + +PL V + R Sbjct: 324 SFGSISRAKVM--MEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQAR 379 Score = 67.8 bits (164), Expect = 3e-11 Identities = 47/172 (27%), Positives = 85/172 (49%), Gaps = 1/172 (0%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 NL +D+ L LF G + +V+ + S+G+ +V ++ A++AI N Sbjct: 112 NLDKSIDNRALFYLFSAFGNILSCKVVC--DDNGSKGYAYVHFDSLAAANRAIWHMNGVR 169 Query: 213 ISGRLLNVNRAAQRGSRV-ERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNAT 389 ++ R + V R R E R A+ +V N+ +D +L ++F E+G + Sbjct: 170 LNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVK 229 Query: 390 IVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 545 ++ D +G+S+GFGFV + E A+ L G+ +DG+ L V A ++ +R Sbjct: 230 VIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIER 280 Score = 32.0 bits (71), Expect = 1.5 Identities = 18/71 (25%), Positives = 33/71 (46%) Frame = +3 Query: 306 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 485 YVG+L + L + F G + I D T G+G+V D + A++ ++ Sbjct: 21 YVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMN 80 Query: 486 GQEMDGRPLRV 518 ++G+P R+ Sbjct: 81 FDLINGKPFRL 91
>PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 87.0 bits (214), Expect = 4e-17 Identities = 56/178 (31%), Positives = 90/178 (50%), Gaps = 10/178 (5%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 N+ D+D E+L +LF + G E +VI + SG+S+GFGFV T E A KA+ + Sbjct: 205 NIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKS 263 Query: 213 ISGRLLNVNRAAQRGSRVERPPRQF----------ASSFRAYVGNLPWQAEDSRLVQMFS 362 I G++L V RA ++ R+ R+F Y+ NL D +L + FS Sbjct: 264 IDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFS 323 Query: 363 EHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAER 536 G + A ++ E G+ +GFG V +S E+ A+ ++G+ + +PL V + R Sbjct: 324 SFGSISRAKVM--MEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQAR 379 Score = 67.8 bits (164), Expect = 3e-11 Identities = 47/172 (27%), Positives = 85/172 (49%), Gaps = 1/172 (0%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 NL +D+ L LF G + +V+ + S+G+ +V ++ A++AI N Sbjct: 112 NLDKSIDNRALFYLFSAFGNILSCKVVC--DDNGSKGYAYVHFDSLAAANRAIWHMNGVR 169 Query: 213 ISGRLLNVNRAAQRGSRV-ERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNAT 389 ++ R + V R R E R A+ +V N+ +D +L ++F E+G + Sbjct: 170 LNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVK 229 Query: 390 IVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 545 ++ D +G+S+GFGFV + E A+ L G+ +DG+ L V A ++ +R Sbjct: 230 VIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIER 280 Score = 32.0 bits (71), Expect = 1.5 Identities = 18/71 (25%), Positives = 33/71 (46%) Frame = +3 Query: 306 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 485 YVG+L + L + F G + I D T G+G+V D + A++ ++ Sbjct: 21 YVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMN 80 Query: 486 GQEMDGRPLRV 518 ++G+P R+ Sbjct: 81 FDLINGKPFRL 91
>PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 87.0 bits (214), Expect = 4e-17 Identities = 56/178 (31%), Positives = 90/178 (50%), Gaps = 10/178 (5%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 N+ D+D E+L +LF + G E +VI + SG+S+GFGFV T E A KA+ + Sbjct: 205 NIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKS 263 Query: 213 ISGRLLNVNRAAQRGSRVERPPRQF----------ASSFRAYVGNLPWQAEDSRLVQMFS 362 I G++L V RA ++ R+ R+F Y+ NL D +L + FS Sbjct: 264 IDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFS 323 Query: 363 EHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAER 536 G + A ++ E G+ +GFG V +S E+ A+ ++G+ + +PL V + R Sbjct: 324 SFGSISRAKVM--MEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQAR 379 Score = 67.8 bits (164), Expect = 3e-11 Identities = 47/172 (27%), Positives = 85/172 (49%), Gaps = 1/172 (0%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 NL +D+ L LF G + +V+ + S+G+ +V ++ A++AI N Sbjct: 112 NLDKSIDNRALFYLFSAFGNILSCKVVC--DDNGSKGYAYVHFDSLAAANRAIWHMNGVR 169 Query: 213 ISGRLLNVNRAAQRGSRV-ERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNAT 389 ++ R + V R R E R A+ +V N+ +D +L ++F E+G + Sbjct: 170 LNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVK 229 Query: 390 IVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 545 ++ D +G+S+GFGFV + E A+ L G+ +DG+ L V A ++ +R Sbjct: 230 VIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIER 280 Score = 32.0 bits (71), Expect = 1.5 Identities = 18/71 (25%), Positives = 33/71 (46%) Frame = +3 Query: 306 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 485 YVG+L + L + F G + I D T G+G+V D + A++ ++ Sbjct: 21 YVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMN 80 Query: 486 GQEMDGRPLRV 518 ++G+P R+ Sbjct: 81 FDLINGKPFRL 91
>PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 87.0 bits (214), Expect = 4e-17 Identities = 56/178 (31%), Positives = 90/178 (50%), Gaps = 10/178 (5%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 N+ D+D E+L +LF + G E +VI + SG+S+GFGFV T E A KA+ + Sbjct: 205 NIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKS 263 Query: 213 ISGRLLNVNRAAQRGSRVERPPRQF----------ASSFRAYVGNLPWQAEDSRLVQMFS 362 I G++L V RA ++ R+ R+F Y+ NL D +L + FS Sbjct: 264 IDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFS 323 Query: 363 EHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAER 536 G + A ++ E G+ +GFG V +S E+ A+ ++G+ + +PL V + R Sbjct: 324 SFGSISRAKVM--MEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQAR 379 Score = 67.8 bits (164), Expect = 3e-11 Identities = 47/172 (27%), Positives = 85/172 (49%), Gaps = 1/172 (0%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 NL +D+ L LF G + +V+ + S+G+ +V ++ A++AI N Sbjct: 112 NLDKSIDNRALFYLFSAFGNILSCKVVC--DDNGSKGYAYVHFDSLAAANRAIWHMNGVR 169 Query: 213 ISGRLLNVNRAAQRGSRV-ERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNAT 389 ++ R + V R R E R A+ +V N+ +D +L ++F E+G + Sbjct: 170 LNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVK 229 Query: 390 IVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 545 ++ D +G+S+GFGFV + E A+ L G+ +DG+ L V A ++ +R Sbjct: 230 VIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIER 280 Score = 32.0 bits (71), Expect = 1.5 Identities = 18/71 (25%), Positives = 33/71 (46%) Frame = +3 Query: 306 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 485 YVG+L + L + F G + I D T G+G+V D + A++ ++ Sbjct: 21 YVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMN 80 Query: 486 GQEMDGRPLRV 518 ++G+P R+ Sbjct: 81 FDLINGKPFRL 91
>PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 87.0 bits (214), Expect = 4e-17 Identities = 56/178 (31%), Positives = 90/178 (50%), Gaps = 10/178 (5%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 N+ D+D E+L +LF + G E +VI + SG+S+GFGFV T E A KA+ + Sbjct: 205 NIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKS 263 Query: 213 ISGRLLNVNRAAQRGSRVERPPRQF----------ASSFRAYVGNLPWQAEDSRLVQMFS 362 I G++L V RA ++ R+ R+F Y+ NL D +L + FS Sbjct: 264 IDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFS 323 Query: 363 EHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAER 536 G + A ++ E G+ +GFG V +S E+ A+ ++G+ + +PL V + R Sbjct: 324 SFGSISRAKVM--MEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQAR 379 Score = 67.8 bits (164), Expect = 3e-11 Identities = 47/172 (27%), Positives = 85/172 (49%), Gaps = 1/172 (0%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 NL +D+ L LF G + +V+ + S+G+ +V ++ A++AI N Sbjct: 112 NLDKSIDNRALFYLFSAFGNILSCKVVC--DDNGSKGYAYVHFDSLAAANRAIWHMNGVR 169 Query: 213 ISGRLLNVNRAAQRGSRV-ERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNAT 389 ++ R + V R R E R A+ +V N+ +D +L ++F E+G + Sbjct: 170 LNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVK 229 Query: 390 IVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 545 ++ D +G+S+GFGFV + E A+ L G+ +DG+ L V A ++ +R Sbjct: 230 VIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIER 280 Score = 32.0 bits (71), Expect = 1.5 Identities = 18/71 (25%), Positives = 33/71 (46%) Frame = +3 Query: 306 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 485 YVG+L + L + F G + I D T G+G+V D + A++ ++ Sbjct: 21 YVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMN 80 Query: 486 GQEMDGRPLRV 518 ++G+P R+ Sbjct: 81 FDLINGKPFRL 91
>GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A| Length = 166 Score = 86.7 bits (213), Expect = 5e-17 Identities = 39/84 (46%), Positives = 56/84 (66%) Frame = +3 Query: 297 FRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS 476 +R +VG L W +D L FS++GEV+++ I+ DRETGRSRGFGFVT ++ + AI Sbjct: 8 YRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIE 67 Query: 477 ALDGQEMDGRPLRVNVAAERPQRG 548 ++GQ++DGR + VN A R G Sbjct: 68 GMNGQDLDGRSITVNEAQSRGSGG 91 Score = 65.9 bits (159), Expect = 1e-10 Identities = 35/81 (43%), Positives = 45/81 (55%) Frame = +3 Query: 18 RCTSGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIET 197 RC G L + D L F Q G V +++I +RE+G+SRGFGFVT + AIE Sbjct: 9 RCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEG 68 Query: 198 FNRYDISGRLLNVNRAAQRGS 260 N D+ GR + VN A RGS Sbjct: 69 MNGQDLDGRSITVNEAQSRGS 89
>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5| Length = 388 Score = 85.9 bits (211), Expect = 9e-17 Identities = 58/184 (31%), Positives = 92/184 (50%), Gaps = 1/184 (0%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G L V L +L QAG V + +R + +GFGFV E+AD AI+ N Sbjct: 18 GGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKILNMI 77 Query: 210 DISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNAT 389 + G+ + VN+A+ ++ +VGNL + ++ L FS G ++ Sbjct: 78 KLYGKPIKVNKASAHEKNMD-------VGANIFVGNLDPEVDEKLLYDTFSAFGVILQVP 130 Query: 390 -IVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQRGF*CGAA 566 I+ D ++G S+GF F+ AS E D+A+ A++GQ + R + V+ A +R +G G A Sbjct: 131 KIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKRDSKGERHGTA 190 Query: 567 AESM 578 AE M Sbjct: 191 AERM 194 Score = 53.9 bits (128), Expect = 4e-07 Identities = 28/75 (37%), Positives = 44/75 (58%) Frame = +3 Query: 306 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 485 YVG L + +S L ++ + G VV+ + DR T +GFGFV +ED D AI L+ Sbjct: 16 YVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKILN 75 Query: 486 GQEMDGRPLRVNVAA 530 ++ G+P++VN A+ Sbjct: 76 MIKLYGKPIKVNKAS 90
>GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein| Length = 157 Score = 85.9 bits (211), Expect = 9e-17 Identities = 39/84 (46%), Positives = 54/84 (64%) Frame = +3 Query: 297 FRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS 476 +R +VG L W D L Q FS+ G++ ++ I+ DRETGRSRGFGFVT ++ + AI Sbjct: 6 YRCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIE 65 Query: 477 ALDGQEMDGRPLRVNVAAERPQRG 548 ++GQE+DGR + VN A R G Sbjct: 66 GMNGQELDGRNITVNEAQSRGSGG 89 Score = 65.9 bits (159), Expect = 1e-10 Identities = 34/81 (41%), Positives = 47/81 (58%) Frame = +3 Query: 18 RCTSGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIET 197 RC G L + + E L Q F Q G + +++I +RE+G+SRGFGFVT + AIE Sbjct: 7 RCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEG 66 Query: 198 FNRYDISGRLLNVNRAAQRGS 260 N ++ GR + VN A RGS Sbjct: 67 MNGQELDGRNITVNEAQSRGS 87
>GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10| Length = 169 Score = 85.1 bits (209), Expect = 2e-16 Identities = 38/80 (47%), Positives = 55/80 (68%) Frame = +3 Query: 297 FRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS 476 +R +VG L W D+ L + FS+ GEV+++ I+ DRETGRSRGFGFVT ++ + AI Sbjct: 6 YRCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAID 65 Query: 477 ALDGQEMDGRPLRVNVAAER 536 ++G+E+DGR + VN A R Sbjct: 66 EMNGKELDGRTITVNEAQSR 85 Score = 60.1 bits (144), Expect = 5e-09 Identities = 31/80 (38%), Positives = 44/80 (55%) Frame = +3 Query: 18 RCTSGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIET 197 RC G L + L + F Q G V +++I +RE+G+SRGFGFVT + AI+ Sbjct: 7 RCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDE 66 Query: 198 FNRYDISGRLLNVNRAAQRG 257 N ++ GR + VN A RG Sbjct: 67 MNGKELDGRTITVNEAQSRG 86
>GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7| Length = 176 Score = 84.3 bits (207), Expect = 3e-16 Identities = 37/84 (44%), Positives = 56/84 (66%) Frame = +3 Query: 297 FRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS 476 +R +VG L W +D L F+++G+V+++ I+ DRETGRSRGFGFVT ++ + AI Sbjct: 8 YRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIE 67 Query: 477 ALDGQEMDGRPLRVNVAAERPQRG 548 ++GQ++DGR + VN A R G Sbjct: 68 GMNGQDLDGRSITVNEAQSRGSGG 91 Score = 64.3 bits (155), Expect = 3e-10 Identities = 35/81 (43%), Positives = 45/81 (55%) Frame = +3 Query: 18 RCTSGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIET 197 RC G L + D L F Q G V +++I +RE+G+SRGFGFVT + AIE Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68 Query: 198 FNRYDISGRLLNVNRAAQRGS 260 N D+ GR + VN A RGS Sbjct: 69 MNGQDLDGRSITVNEAQSRGS 89
>SXL_MUSDO (O17310) Sex-lethal homolog| Length = 324 Score = 83.6 bits (205), Expect = 4e-16 Identities = 53/168 (31%), Positives = 82/168 (48%), Gaps = 2/168 (1%) Frame = +3 Query: 36 LPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYDI 215 LP D+ L LF G + ++ + ++G S G+ FV ++ +A AI+T N + Sbjct: 109 LPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKTVNGITV 168 Query: 216 SGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIV 395 + L V+ A RP + YV NLP D L ++F ++G +V I+ Sbjct: 169 RNKRLKVSYA--------RPGGESIKDTNLYVTNLPRTITDDELEKIFGKYGNIVQKNIL 220 Query: 396 YDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDG--RPLRVNVAAE 533 D+ TGR RG FV +E+ AISAL+ +G +PL V +A E Sbjct: 221 RDKLTGRPRGVAFVRFNKREEAQEAISALNNVIPEGASQPLTVRLAEE 268
>GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A| Length = 169 Score = 83.2 bits (204), Expect = 6e-16 Identities = 37/80 (46%), Positives = 54/80 (67%) Frame = +3 Query: 297 FRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS 476 +R +VG L W ++ L FS+ GE+V++ I+ DRETGRSRGFGFVT ++ + AI Sbjct: 8 YRCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIE 67 Query: 477 ALDGQEMDGRPLRVNVAAER 536 ++GQ++DGR + VN A R Sbjct: 68 GMNGQDLDGRSITVNEAQSR 87 Score = 65.1 bits (157), Expect = 2e-10 Identities = 34/81 (41%), Positives = 45/81 (55%) Frame = +3 Query: 18 RCTSGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIET 197 RC G L + D L F Q G + +++I +RE+G+SRGFGFVT + AIE Sbjct: 9 RCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEG 68 Query: 198 FNRYDISGRLLNVNRAAQRGS 260 N D+ GR + VN A RGS Sbjct: 69 MNGQDLDGRSITVNEAQSRGS 89
>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 653 Score = 83.2 bits (204), Expect = 6e-16 Identities = 51/181 (28%), Positives = 93/181 (51%), Gaps = 10/181 (5%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 NL ++ + + LF Q G + ++ + ++ + RGFGFV + E A KA++ N + Sbjct: 267 NLDTEITEQEFSDLFGQFGEITSLSLVKD-QNDKPRGFGFVNYANHECAQKAVDELNDKE 325 Query: 213 ISGRLLNVNRAAQRGSRVERPPRQFAS----------SFRAYVGNLPWQAEDSRLVQMFS 362 G+ L V RA ++ R E +++ ++ NL + +D RL FS Sbjct: 326 YKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFS 385 Query: 363 EHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQ 542 G + +A I+ D E G+S+GFGFV + E+ + A++ ++ + + G+PL V +A + Sbjct: 386 AFGTITSAKIMTD-EQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRKEV 444 Query: 543 R 545 R Sbjct: 445 R 445 Score = 75.1 bits (183), Expect = 2e-13 Identities = 47/171 (27%), Positives = 84/171 (49%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 NL +D++ L F G + +V + E G ++G+GFV ++E A+ AIE N Sbjct: 174 NLDPAIDNKALHDTFSAFGKILSCKVAVD-ELGNAKGYGFVHFDSVESANAAIEHVNGML 232 Query: 213 ISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATI 392 ++ + + V R R + A+ Y+ NL + + +F + GE+ + ++ Sbjct: 233 LNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSL 292 Query: 393 VYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 545 V D + + RGFGFV A+ E A+ L+ +E G+ L V A ++ +R Sbjct: 293 VKD-QNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHER 342
>GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochondrial| precursor (AtGRP2) Length = 158 Score = 82.8 bits (203), Expect = 8e-16 Identities = 38/82 (46%), Positives = 56/82 (68%) Frame = +3 Query: 294 SFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAI 473 S + ++G L W +D+ L F+ G+VV+A ++ DRETGRSRGFGFV + +AI Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93 Query: 474 SALDGQEMDGRPLRVNVAAERP 539 S +DG+E++GR +RVN A +RP Sbjct: 94 SEMDGKELNGRHIRVNPANDRP 115 Score = 50.8 bits (120), Expect = 3e-06 Identities = 30/77 (38%), Positives = 41/77 (53%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G L + D L F G V A+VI +RE+G+SRGFGFV + A AI + Sbjct: 40 GGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGK 99 Query: 210 DISGRLLNVNRAAQRGS 260 +++GR + VN A R S Sbjct: 100 ELNGRHIRVNPANDRPS 116
>GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2| Length = 168 Score = 82.0 bits (201), Expect = 1e-15 Identities = 36/80 (45%), Positives = 55/80 (68%) Frame = +3 Query: 297 FRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS 476 +R +VG L W + L Q F+ G+V+++ ++ DRETGRSRGFGFVT +S++ + AI Sbjct: 8 YRCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIE 67 Query: 477 ALDGQEMDGRPLRVNVAAER 536 ++G+E+DGR + VN A R Sbjct: 68 NMNGKELDGRNITVNQAQSR 87 Score = 65.1 bits (157), Expect = 2e-10 Identities = 35/80 (43%), Positives = 49/80 (61%) Frame = +3 Query: 18 RCTSGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIET 197 RC G L + ++E L Q F G V ++VI +RE+G+SRGFGFVT S+ + AIE Sbjct: 9 RCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIEN 68 Query: 198 FNRYDISGRLLNVNRAAQRG 257 N ++ GR + VN+A RG Sbjct: 69 MNGKELDGRNITVNQAQSRG 88
>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear| (Poly(A)-binding protein) (PABP) (ARS consensus-binding protein ACBP-67) (Polyadenylate tail-binding protein) Length = 576 Score = 81.6 bits (200), Expect = 2e-15 Identities = 51/181 (28%), Positives = 93/181 (51%), Gaps = 10/181 (5%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 N+ + E+ +LF + G + V+ + G+ +GFGFV E+A KA+E N + Sbjct: 224 NINSETTDEQFQELFAKFGPI-VSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSE 282 Query: 213 ISGRLLNVNRAAQRGSRVERPPRQFAS----------SFRAYVGNLPWQAEDSRLVQMFS 362 ++G L V RA ++ R+ +Q+ + +V NL +D +L + F+ Sbjct: 283 LNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFA 342 Query: 363 EHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQ 542 +G + +A ++ E G+S+GFGFV ++ E+ AI+ + Q + G+PL V +A + Sbjct: 343 PYGTITSAKVM-RTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDV 401 Query: 543 R 545 R Sbjct: 402 R 402 Score = 78.2 bits (191), Expect = 2e-14 Identities = 51/171 (29%), Positives = 88/171 (51%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 NL D+D++ L F G + ++ I E+G+S+GFGFV A +AI+ N Sbjct: 131 NLHPDIDNKALYDTFSVFGDI-LSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGML 189 Query: 213 ISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATI 392 ++G+ + V R R + A YV N+ + D + ++F++ G +V+A++ Sbjct: 190 LNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASL 249 Query: 393 VYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 545 D + G+ +GFGFV ED A+ AL+ E++G L V A ++ +R Sbjct: 250 EKDAD-GKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNER 299 Score = 65.1 bits (157), Expect = 2e-10 Identities = 50/172 (29%), Positives = 78/172 (45%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G+L V L +F G V V + + S G+ +V + E KAIE N Sbjct: 42 GDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQLNYT 101 Query: 210 DISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNAT 389 I GRL + +QR P + S ++ NL ++ L FS G+++++ Sbjct: 102 PIKGRLCRI-MWSQRD-----PSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSK 155 Query: 390 IVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 545 I D E G+S+GFGFV + AI AL+G ++G+ + V R +R Sbjct: 156 IATD-ENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKER 206
>RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 homolog 2| (hnRNP A2(B)) Length = 358 Score = 81.6 bits (200), Expect = 2e-15 Identities = 45/148 (30%), Positives = 77/148 (52%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G L ++ E L ++Q G + V+ + S +SRGFGFVT S + E D A+ + Sbjct: 14 GGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMSA-RPH 72 Query: 210 DISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNAT 389 I GR++ RA R + P + + +VG + E+ L + F E+G++ + Sbjct: 73 TIDGRVVEPKRAVAREESAK--PGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKIESTE 130 Query: 390 IVYDRETGRSRGFGFVTMASKEDLDSAI 473 I+ D+++G+ RGFGFVT + +D + Sbjct: 131 IITDKQSGKKRGFGFVTFNDHDPVDKIV 158 Score = 49.3 bits (116), Expect = 9e-06 Identities = 28/93 (30%), Positives = 49/93 (52%) Frame = +3 Query: 264 VERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTM 443 +ER QF F +G L ++ + L + + G++ + ++ D + RSRGFGFVT Sbjct: 1 MEREKEQFRKLF---IGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTF 57 Query: 444 ASKEDLDSAISALDGQEMDGRPLRVNVAAERPQ 542 + ++D+A+SA +DGR + A R + Sbjct: 58 SCMNEVDAAMSARP-HTIDGRVVEPKRAVAREE 89 Score = 47.4 bits (111), Expect = 3e-05 Identities = 24/75 (32%), Positives = 41/75 (54%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G + D + L + F++ G +E E+I +++SG+ RGFGFVT + + DK I + Sbjct: 105 GGIKEDTEEHHLREYFEEYGKIESTEIITDKQSGKKRGFGFVTFNDHDPVDK-IVLQKYH 163 Query: 210 DISGRLLNVNRAAQR 254 I+G V +A + Sbjct: 164 TINGHNAEVRKALSK 178
>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PABP 2) Length = 629 Score = 81.6 bits (200), Expect = 2e-15 Identities = 54/181 (29%), Positives = 92/181 (50%), Gaps = 10/181 (5%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 NL + L F + G + A V+ + E G+S+GFGFV ++A +A+E+ N + Sbjct: 221 NLAESTTDDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAVESLNGHK 279 Query: 213 ISGRLLNVNRAAQRGSR-------VERPPRQFASSFRA---YVGNLPWQAEDSRLVQMFS 362 + V RA ++ R E+ ++ A F++ YV NL D +L ++FS Sbjct: 280 FDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFS 339 Query: 363 EHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQ 542 G V ++ ++ D G S+G GFV A+ E+ A+S L G+ ++ +PL V +A + Sbjct: 340 PFGTVTSSKVMRD-PNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKED 398 Query: 543 R 545 R Sbjct: 399 R 399 Score = 80.5 bits (197), Expect = 4e-15 Identities = 56/175 (32%), Positives = 87/175 (49%), Gaps = 4/175 (2%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 NL +D + L F G + +V + SGQS+G+GFV + E A KAIE N Sbjct: 130 NLDESIDHKALHDTFSSFGNIVSCKVAVD-SSGQSKGYGFVQYANEESAQKAIEKLN--- 185 Query: 213 ISGRLLNVNRAAQRGSRVERPPRQFASS----FRAYVGNLPWQAEDSRLVQMFSEHGEVV 380 G LLN ++ G + R R ++ YV NL D L F E+G++ Sbjct: 186 --GMLLN-DKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKIT 242 Query: 381 NATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 545 +A ++ D E G+S+GFGFV + +D A+ +L+G + D + V A ++ +R Sbjct: 243 SAVVMKDGE-GKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSER 296 Score = 51.2 bits (121), Expect = 2e-06 Identities = 27/78 (34%), Positives = 41/78 (52%) Frame = +3 Query: 306 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 485 YVG+L + DS+L F + G VV + D T RS G+G+V + +D AI L+ Sbjct: 39 YVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELN 98 Query: 486 GQEMDGRPLRVNVAAERP 539 + G+P+RV + P Sbjct: 99 YIPLYGKPIRVMYSHRDP 116 Score = 40.4 bits (93), Expect = 0.004 Identities = 27/86 (31%), Positives = 45/86 (52%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 NL + E+L ++F G V ++V+ + +G S+G GFV +T EEA +A+ + Sbjct: 324 NLDPSISDEKLKEIFSPFGTVTSSKVMRD-PNGTSKGSGFVAFATPEEATEAMSQLSGKM 382 Query: 213 ISGRLLNVNRAAQRGSRVERPPRQFA 290 I + L V A ++ R R QF+ Sbjct: 383 IESKPLYVAIAQRKEDRRVRLQAQFS 408
>SXL_CHRRU (O97018) Sex-lethal homolog| Length = 307 Score = 81.3 bits (199), Expect = 2e-15 Identities = 51/168 (30%), Positives = 82/168 (48%), Gaps = 2/168 (1%) Frame = +3 Query: 36 LPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYDI 215 LP D+ L LF G + ++ + ++G S G+ FV ++ +A AI++ N + Sbjct: 92 LPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKSLNGVTV 151 Query: 216 SGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIV 395 + L V+ A RP + YV NLP D L ++F ++G +V I+ Sbjct: 152 RNKRLKVSYA--------RPGGESIKDTNLYVTNLPRTITDDELEKIFGKYGNIVQKNIL 203 Query: 396 YDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDG--RPLRVNVAAE 533 D+ TG+ RG FV +E+ AISAL+ +G +PL V +A E Sbjct: 204 RDKLTGKPRGVAFVRFNKREEAQEAISALNNVIPEGASQPLTVRLAEE 251
>SXL_DROME (P19339) Protein sex-lethal| Length = 354 Score = 81.3 bits (199), Expect = 2e-15 Identities = 54/180 (30%), Positives = 87/180 (48%), Gaps = 7/180 (3%) Frame = +3 Query: 15 PRCTSGNL-----PYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEA 179 PR ++ NL P D+ L LF G + ++ + ++G S G+ FV ++ ++ Sbjct: 120 PRASNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDS 179 Query: 180 DKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMF 359 +AI+ N + + L V+ A RP + YV NLP D +L +F Sbjct: 180 QRAIKVLNGITVRNKRLKVSYA--------RPGGESIKDTNLYVTNLPRTITDDQLDTIF 231 Query: 360 SEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDG--RPLRVNVAAE 533 ++G +V I+ D+ TGR RG FV +E+ AISAL+ +G +PL V +A E Sbjct: 232 GKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLAEE 291
>GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 protein)| Length = 169 Score = 81.3 bits (199), Expect = 2e-15 Identities = 37/84 (44%), Positives = 55/84 (65%) Frame = +3 Query: 297 FRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS 476 +R +VG L W D L + FS+ G+V+++ I+ DRE+GRSRGFGFVT ++ + AI Sbjct: 6 YRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65 Query: 477 ALDGQEMDGRPLRVNVAAERPQRG 548 ++G+E+DGR + VN A R G Sbjct: 66 EMNGKELDGRVITVNEAQSRGSGG 89 Score = 65.9 bits (159), Expect = 1e-10 Identities = 35/81 (43%), Positives = 48/81 (59%) Frame = +3 Query: 18 RCTSGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIET 197 RC G L + + E L + F Q G V +++I +RESG+SRGFGFVT + AIE Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66 Query: 198 FNRYDISGRLLNVNRAAQRGS 260 N ++ GR++ VN A RGS Sbjct: 67 MNGKELDGRVITVNEAQSRGS 87
>NUCL_MOUSE (P09405) Nucleolin (Protein C23)| Length = 706 Score = 80.5 bits (197), Expect = 4e-15 Identities = 53/173 (30%), Positives = 88/173 (50%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 NL Y E L ++F++A ++V + G+ +G+ F+ ++ E+A +A+ + N+ + Sbjct: 492 NLSYSATKETLEEVFEKATFIKVPQ----NPHGKPKGYAFIEFASFEDAKEALNSCNKME 547 Query: 213 ISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATI 392 I GR + R +GS P S +V L + L + F V A I Sbjct: 548 IEGRTI---RLELQGSNSRSQP-----SKTLFVKGLSEDTTEETLKESFEGS---VRARI 596 Query: 393 VYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQRGF 551 V DRETG S+GFGFV S+ED +A A++ E+DG + ++ A + + GF Sbjct: 597 VTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGF 649 Score = 48.9 bits (115), Expect = 1e-05 Identities = 32/140 (22%), Positives = 64/140 (45%) Frame = +3 Query: 126 SGQSRGFGFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRA 305 +G +R FG+V + E+ +KA+E + G + + + R S+ R R + Sbjct: 344 TGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGRDSKKVRAARTLLAK--- 399 Query: 306 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 485 NL + + L ++F + E+ + + G+S+G ++ S+ D + + Sbjct: 400 ---NLSFNITEDELKEVFEDAMEIRLVS-----QDGKSKGIAYIEFKSEADAEKNLEEKQ 451 Query: 486 GQEMDGRPLRVNVAAERPQR 545 G E+DGR + + E+ QR Sbjct: 452 GAEIDGRSVSLYYTGEKGQR 471 Score = 33.1 bits (74), Expect = 0.68 Identities = 24/74 (32%), Positives = 36/74 (48%) Frame = +3 Query: 297 FRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS 476 F ++GNL + L SE N V D TG +R FG+V S EDL+ A+ Sbjct: 308 FNLFIGNLNPNKSVNELKFAISELF-AKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE 366 Query: 477 ALDGQEMDGRPLRV 518 L G ++ G +++ Sbjct: 367 -LTGLKVFGNEIKL 379
>RO21_XENLA (P51989) Heterogeneous nuclear ribonucleoprotein A2 homolog 1| (hnRNP A2(A)) Length = 346 Score = 80.5 bits (197), Expect = 4e-15 Identities = 45/148 (30%), Positives = 77/148 (52%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G L ++ E L ++Q G + V+ + S +SRGFGFVT S + E D A+ T + Sbjct: 14 GGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMAT-RPH 72 Query: 210 DISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNAT 389 I GR++ RA R + P + + +VG + E+ L + F E+G++ + Sbjct: 73 TIDGRVVEPKRAVAREESAK--PGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKIDSIE 130 Query: 390 IVYDRETGRSRGFGFVTMASKEDLDSAI 473 I+ D+++G+ RGF FVT + +D + Sbjct: 131 IITDKQSGKKRGFAFVTFDDHDPVDKIV 158 Score = 45.4 bits (106), Expect = 1e-04 Identities = 27/93 (29%), Positives = 47/93 (50%) Frame = +3 Query: 264 VERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTM 443 +ER QF F +G L ++ + L + + G + + ++ D + RSRGFGFVT Sbjct: 1 MEREKEQFRKLF---IGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTF 57 Query: 444 ASKEDLDSAISALDGQEMDGRPLRVNVAAERPQ 542 + ++D+A+ A +DGR + A R + Sbjct: 58 SCMNEVDAAM-ATRPHTIDGRVVEPKRAVAREE 89
>GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-inducible protein| Length = 157 Score = 80.5 bits (197), Expect = 4e-15 Identities = 35/80 (43%), Positives = 54/80 (67%) Frame = +3 Query: 297 FRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS 476 +R +VG L W + L F+ +GE++++ ++ DRETGRSRGFGFVT +S+ + AI Sbjct: 8 YRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIE 67 Query: 477 ALDGQEMDGRPLRVNVAAER 536 ++G+E+DGR + VN A R Sbjct: 68 NMNGKELDGRNITVNQAQSR 87 Score = 61.6 bits (148), Expect = 2e-09 Identities = 33/80 (41%), Positives = 46/80 (57%) Frame = +3 Query: 18 RCTSGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIET 197 RC G L + +E L F G + ++VI +RE+G+SRGFGFVT S+ AIE Sbjct: 9 RCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIEN 68 Query: 198 FNRYDISGRLLNVNRAAQRG 257 N ++ GR + VN+A RG Sbjct: 69 MNGKELDGRNITVNQAQSRG 88
>SXL_DROSU (Q24668) Protein sex-lethal| Length = 354 Score = 80.5 bits (197), Expect = 4e-15 Identities = 51/168 (30%), Positives = 82/168 (48%), Gaps = 2/168 (1%) Frame = +3 Query: 36 LPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYDI 215 LP D+ L LF G + ++ + ++G S G+ FV ++ ++ +AI+ N + Sbjct: 134 LPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVLNGITV 193 Query: 216 SGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIV 395 + L V+ A RP + YV NLP D +L +F ++G +V I+ Sbjct: 194 RNKRLKVSYA--------RPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNIL 245 Query: 396 YDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDG--RPLRVNVAAE 533 D+ TGR RG FV +E+ AISAL+ +G +PL V +A E Sbjct: 246 RDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLAQE 293
>SXL_MEGSC (O01671) Sex-lethal homolog| Length = 321 Score = 79.7 bits (195), Expect = 6e-15 Identities = 50/168 (29%), Positives = 80/168 (47%), Gaps = 2/168 (1%) Frame = +3 Query: 36 LPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYDI 215 LP D+ L LF G + ++ + ++G S G+GFV + +A +AI N + Sbjct: 85 LPQDMQDRELYSLFRTIGPINTCRIMRDYKTGYSYGYGFVDFGSEADALRAINNLNGITV 144 Query: 216 SGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIV 395 + + V+ A RP + YV NL D +L +F ++G++V I+ Sbjct: 145 RNKRIKVSFA--------RPGGEQLRDTNLYVTNLSRSITDEQLETIFGKYGQIVQKNIL 196 Query: 396 YDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDG--RPLRVNVAAE 533 D+ TG RG F+ +E+ AISAL+ +G +PL V VA E Sbjct: 197 RDKHTGTPRGVAFIRFNKREEAQEAISALNNVIPEGGTQPLTVRVAEE 244 Score = 42.7 bits (99), Expect = 9e-04 Identities = 24/73 (32%), Positives = 38/73 (52%) Frame = +3 Query: 309 VGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDG 488 V LP +D L +F G + I+ D +TG S G+GFV S+ D AI+ L+G Sbjct: 82 VNYLPQDMQDRELYSLFRTIGPINTCRIMRDYKTGYSYGYGFVDFGSEADALRAINNLNG 141 Query: 489 QEMDGRPLRVNVA 527 + + ++V+ A Sbjct: 142 ITVRNKRIKVSFA 154
>ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 353 Score = 79.7 bits (195), Expect = 6e-15 Identities = 46/148 (31%), Positives = 76/148 (51%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G L ++ E L ++Q G + V+ + S +SRGFGFVT S++ E D A+ + Sbjct: 26 GGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPH 84 Query: 210 DISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNAT 389 I GR++ RA R + P + + +VG + E+ L F E+G++ Sbjct: 85 SIDGRVVEPKRAVAREESGK--PGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIE 142 Query: 390 IVYDRETGRSRGFGFVTMASKEDLDSAI 473 I+ DR++G+ RGFGFVT + +D + Sbjct: 143 IITDRQSGKKRGFGFVTFDDHDPVDKIV 170 Score = 52.0 bits (123), Expect = 1e-06 Identities = 27/95 (28%), Positives = 52/95 (54%) Frame = +3 Query: 264 VERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTM 443 +ER R+ + ++G L ++ + L + + G++ + ++ D + RSRGFGFVT Sbjct: 10 LERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTF 69 Query: 444 ASKEDLDSAISALDGQEMDGRPLRVNVAAERPQRG 548 +S ++D+A++A +DGR + A R + G Sbjct: 70 SSMAEVDAAMAARP-HSIDGRVVEPKRAVAREESG 103 Score = 47.8 bits (112), Expect = 3e-05 Identities = 25/75 (33%), Positives = 39/75 (52%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G + D + L F++ G ++ E+I +R+SG+ RGFGFVT + DK I + Sbjct: 117 GGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDK-IVLQKYH 175 Query: 210 DISGRLLNVNRAAQR 254 I+G V +A R Sbjct: 176 TINGHNAEVRKALSR 190
>ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 341 Score = 79.7 bits (195), Expect = 6e-15 Identities = 46/148 (31%), Positives = 76/148 (51%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G L ++ E L ++Q G + V+ + S +SRGFGFVT S++ E D A+ + Sbjct: 14 GGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPH 72 Query: 210 DISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNAT 389 I GR++ RA R + P + + +VG + E+ L F E+G++ Sbjct: 73 SIDGRVVEPKRAVAREESGK--PGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIE 130 Query: 390 IVYDRETGRSRGFGFVTMASKEDLDSAI 473 I+ DR++G+ RGFGFVT + +D + Sbjct: 131 IITDRQSGKKRGFGFVTFDDHDPVDKIV 158 Score = 51.2 bits (121), Expect = 2e-06 Identities = 29/95 (30%), Positives = 51/95 (53%) Frame = +3 Query: 264 VERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTM 443 +ER QF F +G L ++ + L + + G++ + ++ D + RSRGFGFVT Sbjct: 1 MEREKEQFRKLF---IGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTF 57 Query: 444 ASKEDLDSAISALDGQEMDGRPLRVNVAAERPQRG 548 +S ++D+A++A +DGR + A R + G Sbjct: 58 SSMAEVDAAMAARP-HSIDGRVVEPKRAVAREESG 91 Score = 47.8 bits (112), Expect = 3e-05 Identities = 25/75 (33%), Positives = 39/75 (52%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G + D + L F++ G ++ E+I +R+SG+ RGFGFVT + DK I + Sbjct: 105 GGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDK-IVLQKYH 163 Query: 210 DISGRLLNVNRAAQR 254 I+G V +A R Sbjct: 164 TINGHNAEVRKALSR 178
>SXL_CERCA (O61374) Sex-lethal homolog (CCSXL)| Length = 348 Score = 79.3 bits (194), Expect = 8e-15 Identities = 50/168 (29%), Positives = 82/168 (48%), Gaps = 2/168 (1%) Frame = +3 Query: 36 LPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYDI 215 LP D+ L LF G + ++ + ++G S G+ FV + ++ +AI++ N + Sbjct: 117 LPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFAAETDSQRAIKSLNGITV 176 Query: 216 SGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIV 395 + L V+ A RP + YV NLP D +L +F ++G +V I+ Sbjct: 177 RNKRLKVSYA--------RPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGMIVQKNIL 228 Query: 396 YDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDG--RPLRVNVAAE 533 D+ TG+ RG FV +E+ AISAL+ +G +PL V +A E Sbjct: 229 RDKLTGKPRGVAFVRFNKREEAQEAISALNNVIPEGASQPLTVRLAEE 276
>SAP49_SCHPO (O14102) Spliceosome-associated protein 49| Length = 335 Score = 79.3 bits (194), Expect = 8e-15 Identities = 58/181 (32%), Positives = 89/181 (49%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 GNL V L +L QAG V + +R GFGF ++ + A + N+ Sbjct: 16 GNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQILNQV 75 Query: 210 DISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNAT 389 + G+ + VNRA+Q +R + +VGNL ++ L FS G++V A Sbjct: 76 KLFGKPIRVNRASQ-----DRGVNTLIGA-NLFVGNLDPLVDERVLYDTFSALGQLVKAP 129 Query: 390 IVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQRGF*CGAAA 569 V E GRS+G+GFV+ S E D+AI A++ Q + +P+ V+ A +R +G G A Sbjct: 130 QVARDENGRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYAFKREGKGERHGDIA 189 Query: 570 E 572 E Sbjct: 190 E 190 Score = 51.2 bits (121), Expect = 2e-06 Identities = 27/76 (35%), Positives = 43/76 (56%) Frame = +3 Query: 306 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 485 Y+GNL + DS L ++ + G VVN I DR GFGF ++D++ A L+ Sbjct: 14 YLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQILN 73 Query: 486 GQEMDGRPLRVNVAAE 533 ++ G+P+RVN A++ Sbjct: 74 QVKLFGKPIRVNRASQ 89
>TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)| Length = 375 Score = 79.0 bits (193), Expect = 1e-14 Identities = 51/170 (30%), Positives = 84/170 (49%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 GNL DV + QLF Q G + ++I S + FV +A A+ N Sbjct: 14 GNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP--YCFVEFYEHRDAAAALAAMNGR 71 Query: 210 DISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNAT 389 I G+ + VN A S+ + ++ F +VG+L + + F+ G++ +A Sbjct: 72 KILGKEVKVNWATTPSSQ----KKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDAR 127 Query: 390 IVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERP 539 +V D TG+S+G+GFV+ +K D ++AI + GQ + GR +R N A +P Sbjct: 128 VVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKP 177 Score = 35.0 bits (79), Expect = 0.18 Identities = 19/74 (25%), Positives = 42/74 (56%) Frame = +3 Query: 306 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 485 YVGNL + ++Q+FS+ G + ++ + + + + FV D +A++A++ Sbjct: 12 YVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMN 69 Query: 486 GQEMDGRPLRVNVA 527 G+++ G+ ++VN A Sbjct: 70 GRKILGKEVKVNWA 83
>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660| (Poly(A)-binding protein At2g36660) (PABP) Length = 609 Score = 77.8 bits (190), Expect = 2e-14 Identities = 54/181 (29%), Positives = 85/181 (46%), Gaps = 10/181 (5%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 NL DV + L + F + G + V+ I E+ RG+ FV E+A +A ET N Sbjct: 207 NLDADVSEDLLREKFAEFGKI-VSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVNGTK 265 Query: 213 ISGRLLNVNRAAQRGSRVERPPRQF----------ASSFRAYVGNLPWQAEDSRLVQMFS 362 + L V RA ++ R + QF A YV N+ + L + FS Sbjct: 266 FGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELRKHFS 325 Query: 363 EHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQ 542 + G + + ++ D E G+S+GFGFV ++ E+ A+ GQ G+PL V +A ++ Sbjct: 326 QCGTITSTKLMCD-EKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQKKED 384 Query: 543 R 545 R Sbjct: 385 R 385 Score = 67.8 bits (164), Expect = 3e-11 Identities = 48/171 (28%), Positives = 84/171 (49%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 NLP V + L +F + G + +V E G+SRG+GFV + A AI+T N Sbjct: 118 NLPESVTNAVLQDMFKKFGNIVSCKVA-TLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTI 176 Query: 213 ISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATI 392 ++ + + V + ++ RV +P ++ + Y+ NL + L + F+E G++V+ I Sbjct: 177 VADKEIYVGKFMKKTDRV-KPEEKYTN---LYMKNLDADVSEDLLREKFAEFGKIVSLAI 232 Query: 393 VYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 545 D E RG+ FV + ED A ++G + + L V A ++ +R Sbjct: 233 AKD-ENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAER 282 Score = 51.2 bits (121), Expect = 2e-06 Identities = 40/172 (23%), Positives = 77/172 (44%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G+L V L F + + + + SG+S +G+ + ++A+ AIE N Sbjct: 29 GDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKKNNS 88 Query: 210 DISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNAT 389 ++G+++ V + V P + +V NLP ++ L MF + G +V+ Sbjct: 89 LLNGKMIRVMWS------VRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCK 142 Query: 390 IVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 545 + E G+SRG+GFV ++ +AI L+ + + + V ++ R Sbjct: 143 VA-TLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDR 193 Score = 47.4 bits (111), Expect = 3e-05 Identities = 31/91 (34%), Positives = 48/91 (52%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 N+ V E L + F Q G + +++ + E G+S+GFGFV ST EEA A++TF+ Sbjct: 310 NVNVAVTEEELRKHFSQCGTITSTKLMCD-EKGKSKGFGFVCFSTPEEAIDAVKTFHGQM 368 Query: 213 ISGRLLNVNRAAQRGSRVERPPRQFASSFRA 305 G+ L V A ++ R + QF + A Sbjct: 369 FHGKPLYVAIAQKKEDRKMQLQVQFGNRVEA 399 Score = 38.9 bits (89), Expect = 0.012 Identities = 20/78 (25%), Positives = 38/78 (48%) Frame = +3 Query: 306 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 485 YVG+L + L F+E + + + D +GRS +G+ S++D + AI + Sbjct: 27 YVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKKN 86 Query: 486 GQEMDGRPLRVNVAAERP 539 ++G+ +RV + P Sbjct: 87 NSLLNGKMIRVMWSVRAP 104
>ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) Length = 371 Score = 77.4 bits (189), Expect = 3e-14 Identities = 44/148 (29%), Positives = 75/148 (50%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G L ++ E L F+Q G + V+ + + +SRGFGFVT +T+EE D A+ + Sbjct: 18 GGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPH 76 Query: 210 DISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNAT 389 + GR++ RA R + P + + +VG + E+ L F ++G++ Sbjct: 77 KVDGRVVEPKRAVSRED--SQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIE 134 Query: 390 IVYDRETGRSRGFGFVTMASKEDLDSAI 473 I+ DR +G+ RGF FVT + +D + Sbjct: 135 IMTDRGSGKKRGFAFVTFDDHDSVDKIV 162 Score = 53.1 bits (126), Expect = 6e-07 Identities = 28/87 (32%), Positives = 49/87 (56%) Frame = +3 Query: 276 PRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKE 455 P++ + ++G L ++ D L F + G + + ++ D T RSRGFGFVT A+ E Sbjct: 6 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 65 Query: 456 DLDSAISALDGQEMDGRPLRVNVAAER 536 ++D+A++A ++DGR + A R Sbjct: 66 EVDAAMNARP-HKVDGRVVEPKRAVSR 91
>ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (HDP) Length = 319 Score = 77.4 bits (189), Expect = 3e-14 Identities = 44/148 (29%), Positives = 75/148 (50%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G L ++ E L F+Q G + V+ + + +SRGFGFVT +T+EE D A+ + Sbjct: 18 GGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPH 76 Query: 210 DISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNAT 389 + GR++ RA R + P + + +VG + E+ L F ++G++ Sbjct: 77 KVDGRVVEPKRAVSRED--SQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIE 134 Query: 390 IVYDRETGRSRGFGFVTMASKEDLDSAI 473 I+ DR +G+ RGF FVT + +D + Sbjct: 135 IMTDRGSGKKRGFAFVTFDDHDSVDKIV 162 Score = 53.1 bits (126), Expect = 6e-07 Identities = 28/87 (32%), Positives = 49/87 (56%) Frame = +3 Query: 276 PRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKE 455 P++ + ++G L ++ D L F + G + + ++ D T RSRGFGFVT A+ E Sbjct: 6 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 65 Query: 456 DLDSAISALDGQEMDGRPLRVNVAAER 536 ++D+A++A ++DGR + A R Sbjct: 66 EVDAAMNARP-HKVDGRVVEPKRAVSR 91
>ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) (HDP-1) (Topoisomerase-inhibitor suppressed) Length = 319 Score = 77.4 bits (189), Expect = 3e-14 Identities = 44/148 (29%), Positives = 75/148 (50%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G L ++ E L F+Q G + V+ + + +SRGFGFVT +T+EE D A+ + Sbjct: 18 GGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPH 76 Query: 210 DISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNAT 389 + GR++ RA R + P + + +VG + E+ L F ++G++ Sbjct: 77 KVDGRVVEPKRAVSRED--SQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIE 134 Query: 390 IVYDRETGRSRGFGFVTMASKEDLDSAI 473 I+ DR +G+ RGF FVT + +D + Sbjct: 135 IMTDRGSGKKRGFAFVTFDDHDSVDKIV 162 Score = 53.1 bits (126), Expect = 6e-07 Identities = 28/87 (32%), Positives = 49/87 (56%) Frame = +3 Query: 276 PRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKE 455 P++ + ++G L ++ D L F + G + + ++ D T RSRGFGFVT A+ E Sbjct: 6 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 65 Query: 456 DLDSAISALDGQEMDGRPLRVNVAAER 536 ++D+A++A ++DGR + A R Sbjct: 66 EVDAAMNARP-HKVDGRVVEPKRAVSR 91
>ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (Unwinding protein 1) (UP1) (Fragment) Length = 195 Score = 77.4 bits (189), Expect = 3e-14 Identities = 44/148 (29%), Positives = 75/148 (50%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G L ++ E L F+Q G + V+ + + +SRGFGFVT +T+EE D A+ + Sbjct: 18 GGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPH 76 Query: 210 DISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNAT 389 + GR++ RA R + P + + +VG + E+ L F ++G++ Sbjct: 77 KVDGRVVEPKRAVSRED--SQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIE 134 Query: 390 IVYDRETGRSRGFGFVTMASKEDLDSAI 473 I+ DR +G+ RGF FVT + +D + Sbjct: 135 IMTDRGSGKKRGFAFVTFDDHDSVDKIV 162 Score = 53.1 bits (126), Expect = 6e-07 Identities = 28/87 (32%), Positives = 49/87 (56%) Frame = +3 Query: 276 PRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKE 455 P++ + ++G L ++ D L F + G + + ++ D T RSRGFGFVT A+ E Sbjct: 6 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 65 Query: 456 DLDSAISALDGQEMDGRPLRVNVAAER 536 ++D+A++A ++DGR + A R Sbjct: 66 EVDAAMNARP-HKVDGRVVEPKRAVSR 91
>ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 378 Score = 77.0 bits (188), Expect = 4e-14 Identities = 42/148 (28%), Positives = 78/148 (52%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G L ++ + L + F++ G + V+ + ++ +SRGFGFVT S +EE D A+ + Sbjct: 40 GGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAM-CARPH 98 Query: 210 DISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNAT 389 + GR++ RA R V+ P + + +VG + E+ L F ++G++ Sbjct: 99 KVDGRVVEPKRAVSREDSVK--PGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIE 156 Query: 390 IVYDRETGRSRGFGFVTMASKEDLDSAI 473 ++ DR++G+ RGF FVT + +D + Sbjct: 157 VMEDRQSGKKRGFAFVTFDDHDTVDKIV 184 Score = 52.4 bits (124), Expect = 1e-06 Identities = 29/99 (29%), Positives = 52/99 (52%) Frame = +3 Query: 240 RAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRS 419 R +R P++ + ++G L ++ D L + F + G + + ++ D +T RS Sbjct: 16 RRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRS 75 Query: 420 RGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAER 536 RGFGFVT + E++D+A+ A ++DGR + A R Sbjct: 76 RGFGFVTYSCVEEVDAAMCARP-HKVDGRVVEPKRAVSR 113 Score = 43.9 bits (102), Expect = 4e-04 Identities = 24/75 (32%), Positives = 38/75 (50%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G + D + L F++ G +E EV+ +R+SG+ RGF FVT + DK I + Sbjct: 131 GGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDK-IVVQKYH 189 Query: 210 DISGRLLNVNRAAQR 254 I+G V +A + Sbjct: 190 TINGHNCEVKKALSK 204
>NUCL_XENLA (P20397) Nucleolin (Protein C23)| Length = 650 Score = 77.0 bits (188), Expect = 4e-14 Identities = 54/184 (29%), Positives = 90/184 (48%), Gaps = 2/184 (1%) Frame = +3 Query: 3 EGRRPRCTSGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEAD 182 EG NL Y + L ++F++A + + + G+++GF F+ S+ E+A Sbjct: 410 EGDSKVLVVNNLSYSATEDSLREVFEKATSIRIPQ-----NQGRAKGFAFIEFSSAEDAK 464 Query: 183 KAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFS 362 A+++ N +I GR + + +Q G A S +V L + L + F Sbjct: 465 DAMDSCNNTEIEGRSIRLE-FSQGGGPQGGGRGGSAQSKTLFVRGLSEDTTEETLKEAFD 523 Query: 363 EHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAER-- 536 VNA IV DR+TG S+GFGFV ++ ED +A A++ E+DG + ++ A + Sbjct: 524 GS---VNARIVTDRDTGASKGFGFVDFSTAEDAKAAKEAMEDGEIDGNKVTLDFAKPKGD 580 Query: 537 PQRG 548 QRG Sbjct: 581 SQRG 584 Score = 69.7 bits (169), Expect = 7e-12 Identities = 45/181 (24%), Positives = 85/181 (46%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 N+PY E L ++F+ A + + + G ++G +V S +EA+KA+E + Sbjct: 330 NIPYSTTVEELQEIFENAKDIRIP----TGKDGSNKGIAYVEFSNEDEANKALEEKQGAE 385 Query: 213 ISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATI 392 I GR + V+ ++ S V NL + A + L ++F + +I Sbjct: 386 IEGRSIFVDFTGEKSQNSGNKKGPEGDSKVLVVNNLSYSATEDSLREVFEKA-----TSI 440 Query: 393 VYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQRGF*CGAAAE 572 + GR++GF F+ +S ED A+ + + E++GR +R+ + +G G +A+ Sbjct: 441 RIPQNQGRAKGFAFIEFSSAEDAKDAMDSCNNTEIEGRSIRLEFSQGGGPQGGGRGGSAQ 500 Query: 573 S 575 S Sbjct: 501 S 501
>ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 77.0 bits (188), Expect = 4e-14 Identities = 42/148 (28%), Positives = 78/148 (52%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G L ++ + L + F++ G + V+ + ++ +SRGFGFVT S +EE D A+ + Sbjct: 40 GGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAM-CARPH 98 Query: 210 DISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNAT 389 + GR++ RA R V+ P + + +VG + E+ L F ++G++ Sbjct: 99 KVDGRVVEPKRAVSREDSVK--PGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIE 156 Query: 390 IVYDRETGRSRGFGFVTMASKEDLDSAI 473 ++ DR++G+ RGF FVT + +D + Sbjct: 157 VMEDRQSGKKRGFAFVTFDDHDTVDKIV 184 Score = 52.4 bits (124), Expect = 1e-06 Identities = 29/99 (29%), Positives = 52/99 (52%) Frame = +3 Query: 240 RAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRS 419 R +R P++ + ++G L ++ D L + F + G + + ++ D +T RS Sbjct: 16 RRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRS 75 Query: 420 RGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAER 536 RGFGFVT + E++D+A+ A ++DGR + A R Sbjct: 76 RGFGFVTYSCVEEVDAAMCARP-HKVDGRVVEPKRAVSR 113 Score = 43.9 bits (102), Expect = 4e-04 Identities = 24/75 (32%), Positives = 38/75 (50%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G + D + L F++ G +E EV+ +R+SG+ RGF FVT + DK I + Sbjct: 131 GGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDK-IVVQKYH 189 Query: 210 DISGRLLNVNRAAQR 254 I+G V +A + Sbjct: 190 TINGHNCEVKKALSK 204
>ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 77.0 bits (188), Expect = 4e-14 Identities = 42/148 (28%), Positives = 78/148 (52%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G L ++ + L + F++ G + V+ + ++ +SRGFGFVT S +EE D A+ + Sbjct: 40 GGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAM-CARPH 98 Query: 210 DISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNAT 389 + GR++ RA R V+ P + + +VG + E+ L F ++G++ Sbjct: 99 KVDGRVVEPKRAVSREDSVK--PGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIE 156 Query: 390 IVYDRETGRSRGFGFVTMASKEDLDSAI 473 ++ DR++G+ RGF FVT + +D + Sbjct: 157 VMEDRQSGKKRGFAFVTFDDHDTVDKIV 184 Score = 52.4 bits (124), Expect = 1e-06 Identities = 29/99 (29%), Positives = 52/99 (52%) Frame = +3 Query: 240 RAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRS 419 R +R P++ + ++G L ++ D L + F + G + + ++ D +T RS Sbjct: 16 RRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRS 75 Query: 420 RGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAER 536 RGFGFVT + E++D+A+ A ++DGR + A R Sbjct: 76 RGFGFVTYSCVEEVDAAMCARP-HKVDGRVVEPKRAVSR 113 Score = 43.9 bits (102), Expect = 4e-04 Identities = 24/75 (32%), Positives = 38/75 (50%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G + D + L F++ G +E EV+ +R+SG+ RGF FVT + DK I + Sbjct: 131 GGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDK-IVVQKYH 189 Query: 210 DISGRLLNVNRAAQR 254 I+G V +A + Sbjct: 190 TINGHNCEVKKALSK 204
>ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog| Length = 342 Score = 76.3 bits (186), Expect = 7e-14 Identities = 48/145 (33%), Positives = 77/145 (53%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G L Y E L Q F+Q G + V+ + ++ +SRGFGF+T S D A + + Sbjct: 22 GGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSRAHMVDDA-QNARPH 80 Query: 210 DISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNAT 389 + GR++ RA R + + RP A+ + +VG + + E++ L F ++G VV+A Sbjct: 81 KVDGRVVEPKRAVPR-TEIGRPEAG-ATVKKLFVGGIKEEMEENDLRDYFKQYGTVVSAA 138 Query: 390 IVYDRETGRSRGFGFVTMASKEDLD 464 IV D+ET + RGF FV + +D Sbjct: 139 IVVDKETRKKRGFAFVEFDDYDPVD 163 Score = 53.5 bits (127), Expect = 5e-07 Identities = 28/83 (33%), Positives = 47/83 (56%) Frame = +3 Query: 300 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 479 + ++G L ++ D L Q F + GE+V+ ++ D +T RSRGFGF+T + +D A +A Sbjct: 18 KLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSRAHMVDDAQNA 77 Query: 480 LDGQEMDGRPLRVNVAAERPQRG 548 ++DGR + A R + G Sbjct: 78 RP-HKVDGRVVEPKRAVPRTEIG 99
>TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding protein TIA-1)| (p40-TIA-1) [Contains: Nucleolysin TIA-1 isoform p15 (p15-TIA-1)] Length = 386 Score = 75.9 bits (185), Expect = 9e-14 Identities = 52/177 (29%), Positives = 81/177 (45%), Gaps = 7/177 (3%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 GNL DV + QLF Q G + ++I + + FV A A+ N Sbjct: 12 GNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP--YCFVEFHEHRHAAAALAAMNGR 69 Query: 210 DISGRLLNVNRAAQRGSRVERPPRQFASS-------FRAYVGNLPWQAEDSRLVQMFSEH 368 I G+ + VN A S+ + S F +VG+L Q + F+ Sbjct: 70 KIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQNHFHVFVGDLSPQITTEDIKAAFAPF 129 Query: 369 GEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERP 539 G + +A +V D TG+S+G+GFV+ +K D ++AI + GQ + GR +R N A +P Sbjct: 130 GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKP 186 Score = 38.9 bits (89), Expect = 0.012 Identities = 21/74 (28%), Positives = 42/74 (56%) Frame = +3 Query: 306 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 485 YVGNL ++ ++Q+FS+ G N ++ D T + + FV +A++A++ Sbjct: 10 YVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAMN 67 Query: 486 GQEMDGRPLRVNVA 527 G+++ G+ ++VN A Sbjct: 68 GRKIMGKEVKVNWA 81
>ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (hnRNP A0)| Length = 305 Score = 75.9 bits (185), Expect = 9e-14 Identities = 46/147 (31%), Positives = 72/147 (48%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G L L F+ G + V+ N ++ +SR FGFVT S +EEAD A+ + + Sbjct: 12 GGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA-SPH 70 Query: 210 DISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNAT 389 + G + + RA R P A + +VG L + L++ FS+ G V A Sbjct: 71 AVDGNTVELKRAVSREDSAR--PGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAE 128 Query: 390 IVYDRETGRSRGFGFVTMASKEDLDSA 470 I+ D+++G+ RGFGFV + + D A Sbjct: 129 IIADKQSGKKRGFGFVYFQNHDAADKA 155 Score = 49.3 bits (116), Expect = 9e-06 Identities = 29/75 (38%), Positives = 40/75 (53%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G L DV L + F Q G VE AE+I +++SG+ RGFGFV + ADKA + Sbjct: 103 GGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKA-AVVKFH 161 Query: 210 DISGRLLNVNRAAQR 254 I G + V +A + Sbjct: 162 PIQGHRVEVKKAVPK 176 Score = 44.7 bits (104), Expect = 2e-04 Identities = 25/79 (31%), Positives = 43/79 (54%) Frame = +3 Query: 300 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 479 + ++G L Q +S L F G + + +V + +T RSR FGFVT ++ E+ D+A++A Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67 Query: 480 LDGQEMDGRPLRVNVAAER 536 +DG + + A R Sbjct: 68 -SPHAVDGNTVELKRAVSR 85
>ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 homolog (hnRNP| A1) (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 365 Score = 75.9 bits (185), Expect = 9e-14 Identities = 44/148 (29%), Positives = 75/148 (50%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G L ++ E L + F+Q G + V+ + S +SRGFGFVT + +E D A+ T + Sbjct: 19 GGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDEVDAAM-TARPH 77 Query: 210 DISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNAT 389 + GR++ RA R P + + +VG + E+ L + F ++G++ Sbjct: 78 KVDGRVVEPKRAVSREDSSR--PGAHLTVKKIFVGGIKEDTEEDHLREYFEQYGKIEVIE 135 Query: 390 IVYDRETGRSRGFGFVTMASKEDLDSAI 473 I+ DR +G+ RGF FVT + +D + Sbjct: 136 IMTDRGSGKKRGFAFVTFEDHDSVDKIV 163 Score = 50.4 bits (119), Expect = 4e-06 Identities = 25/79 (31%), Positives = 46/79 (58%) Frame = +3 Query: 300 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 479 + ++G L ++ D L + F + G + + ++ D + RSRGFGFVT S +++D+A++A Sbjct: 15 KLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDEVDAAMTA 74 Query: 480 LDGQEMDGRPLRVNVAAER 536 ++DGR + A R Sbjct: 75 RP-HKVDGRVVEPKRAVSR 92 Score = 48.5 bits (114), Expect = 2e-05 Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 6/87 (6%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAI----ET 197 G + D + + L + F+Q G +EV E++ +R SG+ RGF FVT + DK + T Sbjct: 110 GGIKEDTEEDHLREYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFEDHDSVDKIVIQKYHT 169 Query: 198 FNRYDISGR--LLNVNRAAQRGSRVER 272 N ++ R L A+ GS+ ER Sbjct: 170 VNNHNSQVRKALSKQEMASVSGSQRER 196
>HNRPM_RAT (Q62826) Heterogeneous nuclear ribonucleoprotein M (hnRNP M) (M4| protein) Length = 689 Score = 75.9 bits (185), Expect = 9e-14 Identities = 56/175 (32%), Positives = 88/175 (50%), Gaps = 3/175 (1%) Frame = +3 Query: 9 RRPRCTSGNLPYDVDSERLAQLF-DQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADK 185 +R R N+P+DV + L L ++ G V E++ + E G+SRG V E K Sbjct: 67 KRYRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAE-GKSRGCAVVEFKMEESMKK 125 Query: 186 AIETFNRYDISGRLLNVNRA--AQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMF 359 A E N++ +SGR L V + R + + S+ +V NL ++ +L ++F Sbjct: 126 AAEVLNKHSLSGRPLKVKEDPDGEHARRAMQKAGRLGST--VFVANLDYKVGWKKLKEVF 183 Query: 360 SEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNV 524 S G VV A I+ D++ G+SRG G VT + AIS +GQ + RP+ V + Sbjct: 184 SMAGVVVRADILEDKD-GKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 237 Score = 40.8 bits (94), Expect = 0.003 Identities = 23/68 (33%), Positives = 38/68 (55%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 NLP+D + L F++ G V A++ E+G+S+G G V + E A++A N Sbjct: 618 NLPFDFTWKMLKDKFNECGHVLYADI--KMENGKSKGCGVVKFESPEVAERACRMMNGMK 675 Query: 213 ISGRLLNV 236 +SGR ++V Sbjct: 676 LSGREIDV 683 Score = 39.7 bits (91), Expect = 0.007 Identities = 24/73 (32%), Positives = 37/73 (50%) Frame = +3 Query: 306 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 485 +V NLP+ L F+E G V+ A I E G+S+G G V S E + A ++ Sbjct: 615 FVRNLPFDFTWKMLKDKFNECGHVLYADI--KMENGKSKGCGVVKFESPEVAERACRMMN 672 Query: 486 GQEMDGRPLRVNV 524 G ++ GR + V + Sbjct: 673 GMKLSGREIDVRI 685
>TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein)| Length = 392 Score = 75.5 bits (184), Expect = 1e-13 Identities = 54/185 (29%), Positives = 87/185 (47%), Gaps = 15/185 (8%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIY----NRESGQSRGFG-----------FVTMS 164 GNL DV + QLF Q G + ++I +R S GF FV Sbjct: 14 GNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFVEFY 73 Query: 165 TIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSR 344 +A A+ N I G+ + VN A S+ + ++ F +VG+L + Sbjct: 74 EHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ----KKDTSNHFHVFVGDLSPEITTED 129 Query: 345 LVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNV 524 + F+ G++ +A +V D TG+S+G+GFV+ +K D ++AI + GQ + GR +R N Sbjct: 130 IKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNW 189 Query: 525 AAERP 539 A +P Sbjct: 190 ATRKP 194 Score = 33.5 bits (75), Expect = 0.52 Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 15/89 (16%) Frame = +3 Query: 306 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYD----RETGRSRGFG-----------FVT 440 YVGNL + ++Q+FS+ G + ++ + R S GF FV Sbjct: 12 YVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFVE 71 Query: 441 MASKEDLDSAISALDGQEMDGRPLRVNVA 527 D +A++A++G+++ G+ ++VN A Sbjct: 72 FYEHRDAAAALAAMNGRKILGKEVKVNWA 100
>RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C (Hrb27-C)| (hnRNP 48) (HRP48.1) Length = 421 Score = 75.1 bits (183), Expect = 2e-13 Identities = 42/154 (27%), Positives = 80/154 (51%) Frame = +3 Query: 3 EGRRPRCTSGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEAD 182 E R + G L ++ E L++ F + G + V+ N ESG+SRGFGFVT + + Sbjct: 3 EDERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVN 62 Query: 183 KAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFS 362 ++ + + GR ++ R +++P + ++ ++G LP ++ L F+ Sbjct: 63 HVLQN-GPHTLDGRTIDPKPCNPR--TLQKPKK--GGGYKVFLGGLPSNVTETDLRTFFN 117 Query: 363 EHGEVVNATIVYDRETGRSRGFGFVTMASKEDLD 464 +G+V I+YD+E +SRGFGF++ + ++ Sbjct: 118 RYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVE 151 Score = 57.4 bits (137), Expect = 3e-08 Identities = 26/87 (29%), Positives = 49/87 (56%), Gaps = 4/87 (4%) Frame = +3 Query: 300 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS- 476 + +VG L W+ L + F G++++ ++ + E+GRSRGFGFVT A +++ + Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQN 67 Query: 477 ---ALDGQEMDGRPLRVNVAAERPQRG 548 LDG+ +D +P ++P++G Sbjct: 68 GPHTLDGRTIDPKPCNPR-TLQKPKKG 93
>ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 319 Score = 75.1 bits (183), Expect = 2e-13 Identities = 43/148 (29%), Positives = 74/148 (50%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G L ++ E L F+Q G + V+ + + +SRGFGFVT +T+E+ D A+ + Sbjct: 18 GGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAAMNA-RPH 76 Query: 210 DISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNAT 389 + GR++ RA R + P + + +VG + E+ L F ++G++ Sbjct: 77 KVDGRVVEPKRAVSRED--SQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIE 134 Query: 390 IVYDRETGRSRGFGFVTMASKEDLDSAI 473 I+ DR +G+ RGF FVT +D + Sbjct: 135 IMTDRGSGKKRGFAFVTFDDHNSVDKIV 162 Score = 52.0 bits (123), Expect = 1e-06 Identities = 28/87 (32%), Positives = 48/87 (55%) Frame = +3 Query: 276 PRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKE 455 P++ + ++G L ++ D L F + G + + ++ D T RSRGFGFVT A+ E Sbjct: 6 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 65 Query: 456 DLDSAISALDGQEMDGRPLRVNVAAER 536 +D+A++A ++DGR + A R Sbjct: 66 KVDAAMNARP-HKVDGRVVEPKRAVSR 91
>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of| activating protein 1 and estrogen receptors) (Coactivator of AP-1 and ERs) (Transcription coactivator CAPER) Length = 530 Score = 75.1 bits (183), Expect = 2e-13 Identities = 47/164 (28%), Positives = 78/164 (47%), Gaps = 6/164 (3%) Frame = +3 Query: 63 LAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYDISGRLL---- 230 L + F G V +I +R S +SRG +V + AI + + ++ Sbjct: 169 LEEFFSTVGKVRDVRMISDRNSRRSRGIAYVEFVDVSSVRLAIGLTGQRVLGVPIIVQAS 228 Query: 231 --NVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDR 404 NRAA + +++ A R YVG+L + + L +F G + + ++ D Sbjct: 229 QAEKNRAAAMANNLQKGS---AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDS 285 Query: 405 ETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAER 536 ETGRS+G+GF+T + E A+ L+G E+ GRP++V ER Sbjct: 286 ETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTER 329 Score = 57.4 bits (137), Expect = 3e-08 Identities = 30/90 (33%), Positives = 53/90 (58%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G+L +++ + L +F+ G +E +++ + E+G+S+G+GF+T S E A KA+E N + Sbjct: 255 GSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGF 314 Query: 210 DISGRLLNVNRAAQRGSRVERPPRQFASSF 299 +++GR + V G ER ASSF Sbjct: 315 ELAGRPMKV------GHVTERTDASSASSF 338
>TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)| Length = 386 Score = 74.7 bits (182), Expect = 2e-13 Identities = 51/177 (28%), Positives = 81/177 (45%), Gaps = 7/177 (3%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 GNL DV + QLF Q G + ++I + + FV A A+ N Sbjct: 12 GNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP--YCFVEFHEHRHAAAALAAMNGR 69 Query: 210 DISGRLLNVNRAAQRGSRVERPPRQFASS-------FRAYVGNLPWQAEDSRLVQMFSEH 368 I G+ + VN A S+ + S F +VG+L + + F+ Sbjct: 70 KIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPF 129 Query: 369 GEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERP 539 G + +A +V D TG+S+G+GFV+ +K D ++AI + GQ + GR +R N A +P Sbjct: 130 GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKP 186 Score = 38.9 bits (89), Expect = 0.012 Identities = 21/74 (28%), Positives = 42/74 (56%) Frame = +3 Query: 306 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 485 YVGNL ++ ++Q+FS+ G N ++ D T + + FV +A++A++ Sbjct: 10 YVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAMN 67 Query: 486 GQEMDGRPLRVNVA 527 G+++ G+ ++VN A Sbjct: 68 GRKIMGKEVKVNWA 81
>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 616 Score = 74.7 bits (182), Expect = 2e-13 Identities = 38/92 (41%), Positives = 56/92 (60%) Frame = +3 Query: 270 RPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMAS 449 R P S +VGN+P++A + +L +FSE G VV+ +VYDRETG+ +G+GF Sbjct: 7 RDPAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQD 66 Query: 450 KEDLDSAISALDGQEMDGRPLRVNVAAERPQR 545 +E SA+ L+G+E GR LRV+ AA + Sbjct: 67 QETALSAMRNLNGREFSGRALRVDNAASEKNK 98 Score = 59.7 bits (143), Expect = 7e-09 Identities = 28/80 (35%), Positives = 45/80 (56%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 GN+PY+ E+L +F + G V ++Y+RE+G+ +G+GF E A A+ N Sbjct: 21 GNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGR 80 Query: 210 DISGRLLNVNRAAQRGSRVE 269 + SGR L V+ AA ++ E Sbjct: 81 EFSGRALRVDNAASEKNKEE 100
>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 632 Score = 74.7 bits (182), Expect = 2e-13 Identities = 38/92 (41%), Positives = 56/92 (60%) Frame = +3 Query: 270 RPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMAS 449 R P S +VGN+P++A + +L +FSE G VV+ +VYDRETG+ +G+GF Sbjct: 7 RDPAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQD 66 Query: 450 KEDLDSAISALDGQEMDGRPLRVNVAAERPQR 545 +E SA+ L+G+E GR LRV+ AA + Sbjct: 67 QETALSAMRNLNGREFSGRALRVDNAASEKNK 98 Score = 59.7 bits (143), Expect = 7e-09 Identities = 28/80 (35%), Positives = 45/80 (56%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 GN+PY+ E+L +F + G V ++Y+RE+G+ +G+GF E A A+ N Sbjct: 21 GNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGR 80 Query: 210 DISGRLLNVNRAAQRGSRVE 269 + SGR L V+ AA ++ E Sbjct: 81 EFSGRALRVDNAASEKNKEE 100
>RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 homolog 2| (hnRNP A3(B)) Length = 385 Score = 74.7 bits (182), Expect = 2e-13 Identities = 41/148 (27%), Positives = 75/148 (50%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G L ++ + L + F+Q G + V+ + ++ +SRGFGFVT S +EE D ++ + Sbjct: 32 GGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMSA-RPH 90 Query: 210 DISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNAT 389 + GR++ RA R P + + +VG + E+ L F +G++ Sbjct: 91 KVDGRVVEPKRAVSREDSAR--PGAHLTVKKIFVGGIKEDTEEYHLRDYFEGYGKIETIE 148 Query: 390 IVYDRETGRSRGFGFVTMASKEDLDSAI 473 ++ DR++G+ RGF FVT + +D + Sbjct: 149 VMEDRQSGKKRGFAFVTFDDHDTVDKIV 176 Score = 53.5 bits (127), Expect = 5e-07 Identities = 27/87 (31%), Positives = 51/87 (58%) Frame = +3 Query: 276 PRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKE 455 P++ + ++G L ++ D L + F + G++ + ++ D +T RSRGFGFVT + E Sbjct: 20 PKEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVE 79 Query: 456 DLDSAISALDGQEMDGRPLRVNVAAER 536 ++D+++SA ++DGR + A R Sbjct: 80 EVDASMSARP-HKVDGRVVEPKRAVSR 105
>HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4 (Cleavage| factor IB) (CFIB) Length = 534 Score = 74.3 bits (181), Expect = 3e-13 Identities = 39/145 (26%), Positives = 79/145 (54%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G L +D + L + F + G V +++ + +G+SRGFGF++ D+ ++T ++ Sbjct: 164 GGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QH 221 Query: 210 DISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNAT 389 + G++++ RA R + + + + +VG + + FS+ G +++A Sbjct: 222 ILDGKVIDPKRAIPRDEQDK--------TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQ 273 Query: 390 IVYDRETGRSRGFGFVTMASKEDLD 464 ++ D++TG+SRGFGFVT S + +D Sbjct: 274 LMLDKDTGQSRGFGFVTYDSADAVD 298 Score = 51.2 bits (121), Expect = 2e-06 Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 3/72 (4%) Frame = +3 Query: 294 SFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAI 473 S + ++G L W + L + F ++G V + I+ D TGRSRGFGF++ +D + Sbjct: 158 SCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVV 217 Query: 474 SA---LDGQEMD 500 LDG+ +D Sbjct: 218 KTQHILDGKVID 229 Score = 46.6 bits (109), Expect = 6e-05 Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 1/76 (1%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G + DV + + F Q G + A+++ ++++GQSRGFGFVT + + D+ + N++ Sbjct: 248 GGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ--NKF 305 Query: 210 -DISGRLLNVNRAAQR 254 D R + + RA R Sbjct: 306 IDFKDRKIEIKRAEPR 321
>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular| carcinoma protein 1) (Splicing factor HCC1) Length = 530 Score = 74.3 bits (181), Expect = 3e-13 Identities = 46/164 (28%), Positives = 78/164 (47%), Gaps = 6/164 (3%) Frame = +3 Query: 63 LAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYDISGRLL---- 230 L + F G V +I +R S +S+G +V + AI + + ++ Sbjct: 169 LEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQAS 228 Query: 231 --NVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDR 404 NRAA + +++ A R YVG+L + + L +F G + + ++ D Sbjct: 229 QAEKNRAAAMANNLQKGS---AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDS 285 Query: 405 ETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAER 536 ETGRS+G+GF+T + E A+ L+G E+ GRP++V ER Sbjct: 286 ETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTER 329 Score = 57.4 bits (137), Expect = 3e-08 Identities = 30/90 (33%), Positives = 53/90 (58%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G+L +++ + L +F+ G +E +++ + E+G+S+G+GF+T S E A KA+E N + Sbjct: 255 GSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGF 314 Query: 210 DISGRLLNVNRAAQRGSRVERPPRQFASSF 299 +++GR + V G ER ASSF Sbjct: 315 ELAGRPMKV------GHVTERTDASSASSF 338
>RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-binding motif protein| 23) (RNA-binding region-containing protein 4) (Splicing factor SF2) Length = 439 Score = 74.3 bits (181), Expect = 3e-13 Identities = 51/173 (29%), Positives = 79/173 (45%), Gaps = 11/173 (6%) Frame = +3 Query: 63 LAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYDISGRLLNV-- 236 L F G V +I +R S +S+G +V I+ AI + RLL V Sbjct: 182 LEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQ-----RLLGVPI 236 Query: 237 ---------NRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNAT 389 NR A + +++ R YVG+L + + L +F G++ N Sbjct: 237 IVQASQAEKNRLAAMANNLQKGN---GGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIV 293 Query: 390 IVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQRG 548 ++ D +TGRS+G+GF+T + E A+ L+G E+ GRP+RV ER G Sbjct: 294 LMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLDGG 346 Score = 51.2 bits (121), Expect = 2e-06 Identities = 21/75 (28%), Positives = 47/75 (62%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G+L +++ + L +F+ G ++ ++ + ++G+S+G+GF+T S E A +A+E N + Sbjct: 268 GSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGF 327 Query: 210 DISGRLLNVNRAAQR 254 +++GR + V +R Sbjct: 328 ELAGRPMRVGHVTER 342
>MYEF2_MOUSE (Q8C854) Myelin expression factor 2 (MyEF-2) (MEF-2)| Length = 591 Score = 73.6 bits (179), Expect = 5e-13 Identities = 67/211 (31%), Positives = 97/211 (45%), Gaps = 40/211 (18%) Frame = +3 Query: 12 RPRCTSGNLPYDVDSERLAQLF-DQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKA 188 R R N+PYD+ + + L ++ G V E+ + E G+SRG G V E KA Sbjct: 90 RNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAE-GKSRGCGVVEFKDEEFVKKA 148 Query: 189 IETFNRYDISGRLLNV---------NRAAQR------GSR--------VERPPR------ 281 +ET N+YD+SGR LN+ RA QR GS V PP Sbjct: 149 LETMNKYDLSGRPLNIKEDPDGENARRALQRTGTSFQGSHASDVGSGLVNLPPSILNNPN 208 Query: 282 ---QFASSFRA-------YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFG 431 + S+ +A +V NL ++ +L ++FS G V A I D++ G+SRG G Sbjct: 209 IPPEVISNLQAGRLGSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKD-GKSRGMG 267 Query: 432 FVTMASKEDLDSAISALDGQEMDGRPLRVNV 524 VT + AIS +GQ + RP+ V + Sbjct: 268 TVTFEQAIEAVQAISMFNGQFLFDRPMHVKM 298 Score = 49.3 bits (116), Expect = 9e-06 Identities = 27/68 (39%), Positives = 40/68 (58%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 NLP+D+ ++L + F Q G V AE+ E+G+S+G G V + E A+KA N Sbjct: 520 NLPFDLTWQKLKEKFSQCGHVMFAEI--KMENGKSKGCGTVRFESAESAEKACRIMNGIK 577 Query: 213 ISGRLLNV 236 ISGR ++V Sbjct: 578 ISGREIDV 585 Score = 41.2 bits (95), Expect = 0.003 Identities = 38/139 (27%), Positives = 61/139 (43%), Gaps = 6/139 (4%) Frame = +3 Query: 126 SGQSRGFGFVTMSTIEEADKAIETFNRYD-----ISGRLLNVNRAAQRGSRVERPPRQFA 290 SG G VT D+ +F+R I R ++V+R G + Sbjct: 451 SGSMSGMSTVTGGMGMGLDRMSSSFDRMGPGIGAILERSIDVDRGFLSGPMGSGMRDRLG 510 Query: 291 SSF-RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDS 467 S + +V NLP+ +L + FS+ G V+ A I E G+S+G G V S E + Sbjct: 511 SKGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEI--KMENGKSKGCGTVRFESAESAEK 568 Query: 468 AISALDGQEMDGRPLRVNV 524 A ++G ++ GR + V + Sbjct: 569 ACRIMNGIKISGREIDVRL 587
>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 580 Score = 73.6 bits (179), Expect = 5e-13 Identities = 38/92 (41%), Positives = 56/92 (60%) Frame = +3 Query: 270 RPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMAS 449 R P S +VGN+P++A + +L +FSE G VV+ +VYDRETG+ +G+GF Sbjct: 7 RDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 66 Query: 450 KEDLDSAISALDGQEMDGRPLRVNVAAERPQR 545 +E SA+ L+G+E GR LRV+ AA + Sbjct: 67 QETALSAMRNLNGREFSGRALRVDNAASEKNK 98 Score = 59.7 bits (143), Expect = 7e-09 Identities = 28/80 (35%), Positives = 45/80 (56%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 GN+PY+ E+L +F + G V ++Y+RE+G+ +G+GF E A A+ N Sbjct: 21 GNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGR 80 Query: 210 DISGRLLNVNRAAQRGSRVE 269 + SGR L V+ AA ++ E Sbjct: 81 EFSGRALRVDNAASEKNKEE 100
>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 73.6 bits (179), Expect = 5e-13 Identities = 38/92 (41%), Positives = 56/92 (60%) Frame = +3 Query: 270 RPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMAS 449 R P S +VGN+P++A + +L +FSE G VV+ +VYDRETG+ +G+GF Sbjct: 7 RDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 66 Query: 450 KEDLDSAISALDGQEMDGRPLRVNVAAERPQR 545 +E SA+ L+G+E GR LRV+ AA + Sbjct: 67 QETALSAMRNLNGREFSGRALRVDNAASEKNK 98 Score = 59.7 bits (143), Expect = 7e-09 Identities = 28/80 (35%), Positives = 45/80 (56%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 GN+PY+ E+L +F + G V ++Y+RE+G+ +G+GF E A A+ N Sbjct: 21 GNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGR 80 Query: 210 DISGRLLNVNRAAQRGSRVE 269 + SGR L V+ AA ++ E Sbjct: 81 EFSGRALRVDNAASEKNKEE 100
>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 73.6 bits (179), Expect = 5e-13 Identities = 38/92 (41%), Positives = 56/92 (60%) Frame = +3 Query: 270 RPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMAS 449 R P S +VGN+P++A + +L +FSE G VV+ +VYDRETG+ +G+GF Sbjct: 7 RDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 66 Query: 450 KEDLDSAISALDGQEMDGRPLRVNVAAERPQR 545 +E SA+ L+G+E GR LRV+ AA + Sbjct: 67 QETALSAMRNLNGREFSGRALRVDNAASEKNK 98 Score = 59.7 bits (143), Expect = 7e-09 Identities = 28/80 (35%), Positives = 45/80 (56%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 GN+PY+ E+L +F + G V ++Y+RE+G+ +G+GF E A A+ N Sbjct: 21 GNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGR 80 Query: 210 DISGRLLNVNRAAQRGSRVE 269 + SGR L V+ AA ++ E Sbjct: 81 EFSGRALRVDNAASEKNKEE 100
>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 572 Score = 73.6 bits (179), Expect = 5e-13 Identities = 38/92 (41%), Positives = 56/92 (60%) Frame = +3 Query: 270 RPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMAS 449 R P S +VGN+P++A + +L +FSE G VV+ +VYDRETG+ +G+GF Sbjct: 7 RDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 66 Query: 450 KEDLDSAISALDGQEMDGRPLRVNVAAERPQR 545 +E SA+ L+G+E GR LRV+ AA + Sbjct: 67 QETALSAMRNLNGREFSGRALRVDNAASEKNK 98 Score = 59.7 bits (143), Expect = 7e-09 Identities = 28/80 (35%), Positives = 45/80 (56%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 GN+PY+ E+L +F + G V ++Y+RE+G+ +G+GF E A A+ N Sbjct: 21 GNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGR 80 Query: 210 DISGRLLNVNRAAQRGSRVE 269 + SGR L V+ AA ++ E Sbjct: 81 EFSGRALRVDNAASEKNKEE 100
>DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 406 Score = 73.2 bits (178), Expect = 6e-13 Identities = 47/182 (25%), Positives = 82/182 (45%), Gaps = 10/182 (5%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G L + E L F Q G V ++ ++ + QSRGFGFV + + + Sbjct: 15 GGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPH 73 Query: 210 DISGRLLNVNRAAQRGSRVER----------PPRQFASSFRAYVGNLPWQAEDSRLVQMF 359 + GR ++ RG + ER P + S + +VG +P ++ L + F Sbjct: 74 TLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDSSKSNKIFVGGIPHNCGETELREYF 133 Query: 360 SEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERP 539 + G V ++YD E R RGFGF+T ++ +D A++ + ++ G+ + V A R Sbjct: 134 KKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAEPRD 192 Query: 540 QR 545 + Sbjct: 193 SK 194 Score = 55.5 bits (132), Expect = 1e-07 Identities = 31/99 (31%), Positives = 52/99 (52%), Gaps = 7/99 (7%) Frame = +3 Query: 300 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 479 + +VG L W L FS++GEVV+ I+ D+ T +SRGFGFV + + +++ Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70 Query: 480 ----LDGQEMDGRPLR---VNVAAERPQRGF*CGAAAES 575 LDG+ +D +P + RP+ G+ G ++S Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDS 109
>DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) (Proline-rich Vg1 mRNA-binding protein) Length = 360 Score = 73.2 bits (178), Expect = 6e-13 Identities = 47/183 (25%), Positives = 83/183 (45%), Gaps = 11/183 (6%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G L + E L F Q G V ++ ++ + QSRGFGFV + + + Sbjct: 15 GGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPH 73 Query: 210 DISGRLLNVNRAAQRGSRVER-----------PPRQFASSFRAYVGNLPWQAEDSRLVQM 356 + GR ++ RG + ER P + + S + +VG +P ++ L + Sbjct: 74 TLDGRNIDPKPCTPRGMQPERSRPREGWQQKEPRTENSRSNKIFVGGIPHNCGETELKEY 133 Query: 357 FSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAER 536 F+ G V ++YD E R RGFGF+T ++ +D A++ + ++ G+ + V A R Sbjct: 134 FNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAEPR 192 Query: 537 PQR 545 + Sbjct: 193 DSK 195 Score = 54.3 bits (129), Expect = 3e-07 Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 7/91 (7%) Frame = +3 Query: 300 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 479 + +VG L W L FS++GEVV+ I+ D+ T +SRGFGFV + + +++ Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70 Query: 480 ----LDGQEMDGRPLR---VNVAAERPQRGF 551 LDG+ +D +P + RP+ G+ Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQPERSRPREGW 101
>NUCL_CHICK (P15771) Nucleolin (Protein C23)| Length = 694 Score = 73.2 bits (178), Expect = 6e-13 Identities = 53/177 (29%), Positives = 89/177 (50%), Gaps = 5/177 (2%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 NL Y E L +LF +A +++ + G+ +G+ FV T E+A +A+ + N + Sbjct: 467 NLSYAASEETLQELFKKATSIKMPQ----NNQGRPKGYAFVEFPTAEDAKEALNSCNNTE 522 Query: 213 ISGRLLNVNRAA---QRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVN 383 I GR + + ++ Q+G+ R S +V L + L + F ++ Sbjct: 523 IEGRAIRLEFSSPSWQKGNMNARGGFNQQSK-TLFVRGLSEDTTEETLRESFEGS---IS 578 Query: 384 ATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERP--QRG 548 A IV DR+TG S+GFGFV +S ED +A A++ E+DG + ++ A + QRG Sbjct: 579 ARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEIDGNKVTLDFAKPKGEFQRG 635 Score = 55.8 bits (133), Expect = 1e-07 Identities = 35/139 (25%), Positives = 71/139 (51%) Frame = +3 Query: 129 GQSRGFGFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAY 308 G S+ FG+V + E+ DKA++ N + G + + +A + S E + A + + Sbjct: 318 GSSKRFGYVDFLSAEDMDKALQ-LNGKKLMGLEIKLEKAKSKESLKENKKERDARTL--F 374 Query: 309 VGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDG 488 V NLP++ + + +F EV +V ++E G S+G ++ ++ + + A+ G Sbjct: 375 VKNLPYRVTEDEMKNVFENALEV---RLVLNKE-GSSKGMAYIEFKTEAEAEKALEEKQG 430 Query: 489 QEMDGRPLRVNVAAERPQR 545 E+DGR + ++ E+ Q+ Sbjct: 431 TEVDGRAMVIDYTGEKSQQ 449
>DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 407 Score = 72.8 bits (177), Expect = 8e-13 Identities = 47/182 (25%), Positives = 82/182 (45%), Gaps = 10/182 (5%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G L + E L F Q G V ++ ++ + QSRGFGFV + + + Sbjct: 15 GGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPH 73 Query: 210 DISGRLLNVNRAAQRGSRVER----------PPRQFASSFRAYVGNLPWQAEDSRLVQMF 359 + GR ++ RG + ER P + S + +VG +P ++ L + F Sbjct: 74 TLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELREYF 133 Query: 360 SEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERP 539 + G V ++YD E R RGFGF+T ++ +D A++ + ++ G+ + V A R Sbjct: 134 KKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAEPRD 192 Query: 540 QR 545 + Sbjct: 193 SK 194 Score = 54.3 bits (129), Expect = 3e-07 Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 7/99 (7%) Frame = +3 Query: 300 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 479 + +VG L W L FS++GEVV+ I+ D+ T +SRGFGFV + + +++ Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70 Query: 480 ----LDGQEMDGRPLR---VNVAAERPQRGF*CGAAAES 575 LDG+ +D +P + RP+ G+ G +++ Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDN 109
>RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA| Length = 101 Score = 72.8 bits (177), Expect = 8e-13 Identities = 37/80 (46%), Positives = 49/80 (61%) Frame = +3 Query: 306 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 485 YVGNL + ++ L +F+E+G V + DRETGR RGFGFV + + + +AI ALD Sbjct: 4 YVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDRETGRMRGFGFVELEADAEETAAIEALD 63 Query: 486 GQEMDGRPLRVNVAAERPQR 545 G E GR L+VN A R R Sbjct: 64 GAEWMGRDLKVNKAKPRENR 83 Score = 55.8 bits (133), Expect = 1e-07 Identities = 31/78 (39%), Positives = 44/78 (56%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 GNL YDV L +F + G V+ ++ +RE+G+ RGFGFV + E AIE + Sbjct: 6 GNLSYDVSEADLTAVFAEYGSVKRVQLPTDRETGRMRGFGFVELEADAEETAAIEALDGA 65 Query: 210 DISGRLLNVNRAAQRGSR 263 + GR L VN+A R +R Sbjct: 66 EWMGRDLKVNKAKPRENR 83
>CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 72.8 bits (177), Expect = 8e-13 Identities = 36/92 (39%), Positives = 59/92 (64%), Gaps = 3/92 (3%) Frame = +3 Query: 300 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 479 + +VG L + + L Q+FS++G++ +V DRET RSRGFGFVT + +D A+ A Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 480 LDGQEMDGRPLRVNVA---AERPQRGF*CGAA 566 ++G+ +DGR +RV+ A ++ RG+ G+A Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSA 98 Score = 57.8 bits (138), Expect = 3e-08 Identities = 29/93 (31%), Positives = 50/93 (53%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G L +D + + L Q+F + G + V+ +RE+ +SRGFGFVT I++A A+ N Sbjct: 11 GGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGK 70 Query: 210 DISGRLLNVNRAAQRGSRVERPPRQFASSFRAY 308 + GR + V++A + R R ++ R + Sbjct: 71 SVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGF 103
>CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) Length = 172 Score = 72.8 bits (177), Expect = 8e-13 Identities = 36/92 (39%), Positives = 59/92 (64%), Gaps = 3/92 (3%) Frame = +3 Query: 300 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 479 + +VG L + + L Q+FS++G++ +V DRET RSRGFGFVT + +D A+ A Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 480 LDGQEMDGRPLRVNVA---AERPQRGF*CGAA 566 ++G+ +DGR +RV+ A ++ RG+ G+A Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSA 98 Score = 57.8 bits (138), Expect = 3e-08 Identities = 29/93 (31%), Positives = 50/93 (53%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G L +D + + L Q+F + G + V+ +RE+ +SRGFGFVT I++A A+ N Sbjct: 11 GGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGK 70 Query: 210 DISGRLLNVNRAAQRGSRVERPPRQFASSFRAY 308 + GR + V++A + R R ++ R + Sbjct: 71 SVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGF 103
>CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 72.8 bits (177), Expect = 8e-13 Identities = 36/92 (39%), Positives = 59/92 (64%), Gaps = 3/92 (3%) Frame = +3 Query: 300 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 479 + +VG L + + L Q+FS++G++ +V DRET RSRGFGFVT + +D A+ A Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 480 LDGQEMDGRPLRVNVA---AERPQRGF*CGAA 566 ++G+ +DGR +RV+ A ++ RG+ G+A Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSA 98 Score = 57.8 bits (138), Expect = 3e-08 Identities = 29/93 (31%), Positives = 50/93 (53%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G L +D + + L Q+F + G + V+ +RE+ +SRGFGFVT I++A A+ N Sbjct: 11 GGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGK 70 Query: 210 DISGRLLNVNRAAQRGSRVERPPRQFASSFRAY 308 + GR + V++A + R R ++ R + Sbjct: 71 SVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGF 103
>CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 72.8 bits (177), Expect = 8e-13 Identities = 36/92 (39%), Positives = 59/92 (64%), Gaps = 3/92 (3%) Frame = +3 Query: 300 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 479 + +VG L + + L Q+FS++G++ +V DRET RSRGFGFVT + +D A+ A Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 480 LDGQEMDGRPLRVNVA---AERPQRGF*CGAA 566 ++G+ +DGR +RV+ A ++ RG+ G+A Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSA 98 Score = 57.8 bits (138), Expect = 3e-08 Identities = 29/93 (31%), Positives = 50/93 (53%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G L +D + + L Q+F + G + V+ +RE+ +SRGFGFVT I++A A+ N Sbjct: 11 GGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGK 70 Query: 210 DISGRLLNVNRAAQRGSRVERPPRQFASSFRAY 308 + GR + V++A + R R ++ R + Sbjct: 71 SVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGF 103
>CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 72.8 bits (177), Expect = 8e-13 Identities = 36/92 (39%), Positives = 59/92 (64%), Gaps = 3/92 (3%) Frame = +3 Query: 300 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 479 + +VG L + + L Q+FS++G++ +V DRET RSRGFGFVT + +D A+ A Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 480 LDGQEMDGRPLRVNVA---AERPQRGF*CGAA 566 ++G+ +DGR +RV+ A ++ RG+ G+A Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSA 98 Score = 57.8 bits (138), Expect = 3e-08 Identities = 29/93 (31%), Positives = 50/93 (53%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G L +D + + L Q+F + G + V+ +RE+ +SRGFGFVT I++A A+ N Sbjct: 11 GGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGK 70 Query: 210 DISGRLLNVNRAAQRGSRVERPPRQFASSFRAY 308 + GR + V++A + R R ++ R + Sbjct: 71 SVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGF 103
>MYEF2_HUMAN (Q9P2K5) Myelin expression factor 2 (MyEF-2) (MST156)| Length = 600 Score = 72.8 bits (177), Expect = 8e-13 Identities = 65/211 (30%), Positives = 96/211 (45%), Gaps = 40/211 (18%) Frame = +3 Query: 12 RPRCTSGNLPYDVDSERLAQLF-DQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKA 188 R R N+PYD+ + + L ++ G V E+ + E G+SRG G V E KA Sbjct: 99 RNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAE-GKSRGCGVVEFKDEEFVKKA 157 Query: 189 IETFNRYDISGRLLNV---------NRAAQR---------------------GSRVERP- 275 +ET N+YD+SGR LN+ RA QR S + P Sbjct: 158 LETMNKYDLSGRPLNIKEDPDGENARRALQRTGGSFPGGHVPDMGSGLMNLPPSILNNPN 217 Query: 276 -PRQFASSFRA-------YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFG 431 P + S+ +A +V NL ++ +L ++FS G V A I D++ G+SRG G Sbjct: 218 IPPEVISNLQAGRLGSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKD-GKSRGMG 276 Query: 432 FVTMASKEDLDSAISALDGQEMDGRPLRVNV 524 VT + AIS +GQ + RP+ V + Sbjct: 277 TVTFEQAIEAVQAISMFNGQFLFDRPMHVKM 307 Score = 48.5 bits (114), Expect = 2e-05 Identities = 27/68 (39%), Positives = 40/68 (58%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 NLP+D+ ++L + F Q G V AE+ E+G+S+G G V + E A+KA N Sbjct: 529 NLPFDLTWQKLKEKFSQCGHVMFAEI--KMENGKSKGCGTVRFDSPESAEKACRIMNGIK 586 Query: 213 ISGRLLNV 236 ISGR ++V Sbjct: 587 ISGREIDV 594 Score = 40.0 bits (92), Expect = 0.006 Identities = 24/73 (32%), Positives = 39/73 (53%) Frame = +3 Query: 306 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 485 +V NLP+ +L + FS+ G V+ A I E G+S+G G V S E + A ++ Sbjct: 526 FVRNLPFDLTWQKLKEKFSQCGHVMFAEI--KMENGKSKGCGTVRFDSPESAEKACRIMN 583 Query: 486 GQEMDGRPLRVNV 524 G ++ GR + V + Sbjct: 584 GIKISGREIDVRL 596
>RO31_XENLA (P51968) Heterogeneous nuclear ribonucleoprotein A3 homolog 1| (hnRNP A3(A)) Length = 373 Score = 72.4 bits (176), Expect = 1e-12 Identities = 40/148 (27%), Positives = 74/148 (50%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G L ++ + L + F+Q G + V+ + ++ +SRGFGFVT S +EE D ++ + Sbjct: 32 GGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMSA-RPH 90 Query: 210 DISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNAT 389 + GR++ RA R P + + +VG + E+ L +G++ Sbjct: 91 KVDGRVVEPKRAVSREDSAR--PGAHLTVKKIFVGGIKEDTEEYHLRDYSESYGKIETIE 148 Query: 390 IVYDRETGRSRGFGFVTMASKEDLDSAI 473 ++ DR++G+ RGF FVT + +D + Sbjct: 149 VMEDRQSGKKRGFAFVTFDDHDTVDKIV 176 Score = 53.5 bits (127), Expect = 5e-07 Identities = 27/87 (31%), Positives = 51/87 (58%) Frame = +3 Query: 276 PRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKE 455 P++ + ++G L ++ D L + F + G++ + ++ D +T RSRGFGFVT + E Sbjct: 20 PKEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVE 79 Query: 456 DLDSAISALDGQEMDGRPLRVNVAAER 536 ++D+++SA ++DGR + A R Sbjct: 80 EVDASMSARP-HKVDGRVVEPKRAVSR 105
>GRP1_SORBI (Q99069) Glycine-rich RNA-binding protein 1 (Fragment)| Length = 142 Score = 71.2 bits (173), Expect = 2e-12 Identities = 34/64 (53%), Positives = 47/64 (73%) Frame = +3 Query: 357 FSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAER 536 FS +GEV+ + I+ DRET RSRGFGFVT +++E + SAI ++G+E+DGR + VN A R Sbjct: 7 FSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVNEAQSR 66 Query: 537 PQRG 548 RG Sbjct: 67 GGRG 70 Score = 55.1 bits (131), Expect = 2e-07 Identities = 30/67 (44%), Positives = 39/67 (58%) Frame = +3 Query: 63 LAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYDISGRLLNVNR 242 L F G V +++I +RE+ +SRGFGFVT ST E AIE N ++ GR + VN Sbjct: 3 LHSAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVNE 62 Query: 243 AAQRGSR 263 A RG R Sbjct: 63 AQSRGGR 69
>LARK_DROME (Q94901) RNA-binding protein lark| Length = 352 Score = 70.9 bits (172), Expect = 3e-12 Identities = 53/186 (28%), Positives = 86/186 (46%), Gaps = 9/186 (4%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 GNL + L LF++ G V +V+ N +GFV M T ++ AI+ N Y Sbjct: 12 GNLDEKTQATELRALFEKYGTVVECDVVKN--------YGFVHMETEQQGRDAIQNLNGY 63 Query: 210 DISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNAT 389 ++ + V A R R P + + +VGNL + + ++F ++G VV Sbjct: 64 TLNEFAIKVEAAKSR-----RAPN--TPTTKIFVGNLTDKTRAPEVRELFQKYGTVVECD 116 Query: 390 IVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAER---------PQ 542 IV R +GFV + D+ AI L+G+ +DG+PL+V V+ R P+ Sbjct: 117 IV--------RNYGFVHLDCVGDVQDAIKELNGRVVDGQPLKVQVSTSRVRPKPGMGDPE 168 Query: 543 RGF*CG 560 + + CG Sbjct: 169 QCYRCG 174
>RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 960 Score = 70.9 bits (172), Expect = 3e-12 Identities = 52/169 (30%), Positives = 83/169 (49%), Gaps = 13/169 (7%) Frame = +3 Query: 15 PRCTS--GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQ---SRGFGFVTMSTIEEA 179 P CT NL +D E+L ++F + G V+ + + S GFGFV E+A Sbjct: 728 PGCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQA 787 Query: 180 DKAIETFNRYDISGRLLNVNRAAQRGS-------RVERPPRQFASSFRAYVGNLPWQAED 338 KA++ + + G L V R ++R + R ++ PR+ +S + V N+P+QA Sbjct: 788 QKALKQLQGHVVDGHKLEV-RISERATKPAVTLARKKQVPRKQTTS-KILVRNIPFQAHS 845 Query: 339 SRLVQMFSEHGEVVNATIVYDRE-TGRSRGFGFVTMASKEDLDSAISAL 482 + ++FS GE+ + TG RGFGFV +K+D A +AL Sbjct: 846 REIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAFNAL 894 Score = 57.8 bits (138), Expect = 3e-08 Identities = 48/177 (27%), Positives = 74/177 (41%), Gaps = 17/177 (9%) Frame = +3 Query: 39 PYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYDIS 218 P++V + + + A + VA I G G+ FV S EE +A++ NR + Sbjct: 302 PFNVTEKNVMEFL--APLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKC-NREYMG 358 Query: 219 GRLLNVNRAAQRGSRVERPPR-----------------QFASSFRAYVGNLPWQAEDSRL 347 GR + V R + P A S R +V NLP+ + + L Sbjct: 359 GRYIEVFREKNVPTTKGAPKNTTKSWQGRILGENEEEEDLAESGRLFVRNLPYTSTEEDL 418 Query: 348 VQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRV 518 ++FS++G + D T + +GF F+T E A S +DGQ GR L V Sbjct: 419 EKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYSEVDGQVFQGRMLHV 475 Score = 41.2 bits (95), Expect = 0.003 Identities = 34/134 (25%), Positives = 57/134 (42%), Gaps = 22/134 (16%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 NLP + ER QLF G + + + ++ G+ R FGF+ + EEA KA + FN+ Sbjct: 8 NLPNGMKEERFRQLFAAFGTLTDCSLKFTKD-GKFRKFGFIGFKSEEEAQKAQKHFNKSF 66 Query: 213 ISGRLLNV---------------NRAAQRGSRVERPPRQFAS-------SFRAYVGNLPW 326 I + V ++ AQ+ S+ ++PP+ + + G L Sbjct: 67 IDTSRITVEFCKSFGDPAKPRAWSKHAQKPSQPKQPPKDSTTPEIKKDEKKKKVAGQLEK 126 Query: 327 QAEDSRLVQMFSEH 368 ED+ + S H Sbjct: 127 LKEDTEFQEFLSVH 140 Score = 39.3 bits (90), Expect = 0.010 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 3/77 (3%) Frame = +3 Query: 306 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGR---SRGFGFVTMASKEDLDSAIS 476 ++ NL + + +L ++FS+ G V + +I + S GFGFV E A+ Sbjct: 733 FIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKALK 792 Query: 477 ALDGQEMDGRPLRVNVA 527 L G +DG L V ++ Sbjct: 793 QLQGHVVDGHKLEVRIS 809 Score = 35.4 bits (80), Expect = 0.14 Identities = 21/68 (30%), Positives = 32/68 (47%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 NLPY E L +LF + G + + + + +GF F+T E A KA + Sbjct: 408 NLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYSEVDGQV 467 Query: 213 ISGRLLNV 236 GR+L+V Sbjct: 468 FQGRMLHV 475 Score = 33.9 bits (76), Expect = 0.40 Identities = 17/57 (29%), Positives = 32/57 (56%) Frame = +3 Query: 300 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSA 470 R V NLP ++ R Q+F+ G + + ++ + ++ G+ R FGF+ S+E+ A Sbjct: 3 RLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKD-GKFRKFGFIGFKSEEEAQKA 58
>RBM4_BRARE (Q6IQ97) RNA-binding protein 4 (RNA-binding motif protein 4)| Length = 419 Score = 70.9 bits (172), Expect = 3e-12 Identities = 49/169 (28%), Positives = 76/169 (44%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 GNL + +E + LF Q G + +++ N FGFV M + EAD+AI+ + Y Sbjct: 7 GNLSPNTTAEEIRSLFSQYGKISECDIVKN--------FGFVHMDSKSEADEAIQNLHHY 58 Query: 210 DISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNAT 389 ++G +NV + + +S + +VGN+ + L F E+G VV Sbjct: 59 MLNGMAMNVEMSKGKPK----------TSTKLHVGNISSSCTNQELRAKFEEYGPVVECD 108 Query: 390 IVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAER 536 IV D + FV M ED AIS LD G+ + V ++ R Sbjct: 109 IVKD--------YAFVHMERVEDAMEAISGLDNTAFQGKLMSVKLSTSR 149 Score = 40.8 bits (94), Expect = 0.003 Identities = 23/81 (28%), Positives = 40/81 (49%) Frame = +3 Query: 300 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 479 + +VGNL + +FS++G++ IV + FGFV M SK + D AI Sbjct: 3 KIFVGNLSPNTTAEEIRSLFSQYGKISECDIV--------KNFGFVHMDSKSEADEAIQN 54 Query: 480 LDGQEMDGRPLRVNVAAERPQ 542 L ++G + V ++ +P+ Sbjct: 55 LHHYMLNGMAMNVEMSKGKPK 75
>GBP2_YEAST (P25555) Single-strand telomeric DNA-binding protein GBP2| (G-strand-binding protein 2) (RAP1 localization factor 6) Length = 427 Score = 69.7 bits (169), Expect = 7e-12 Identities = 53/168 (31%), Positives = 80/168 (47%), Gaps = 6/168 (3%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 NL +D E L +LF G V A++I ++ G RG G V + E AI F+ Sbjct: 128 NLTFDCTPEDLKELFGTVGEVVEADIITSK--GHHRGMGTVEFTKNESVQDAISKFDGAL 185 Query: 213 ISGRLLNVNR------AAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGE 374 R L V + AA+ S+ + + + F ++ NLP+ L MF E G Sbjct: 186 FMDRKLMVRQDNPPPEAAKEFSK-KATREEIDNGFEVFIINLPYSMNWQSLKDMFKECGH 244 Query: 375 VVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRV 518 V+ A + D G SRGFG V +++++ AI +G E++GR L V Sbjct: 245 VLRADVELDFN-GFSRGFGSVIYPTEDEMIRAIDTFNGMEVEGRVLEV 291 Score = 36.6 bits (83), Expect = 0.062 Identities = 22/71 (30%), Positives = 33/71 (46%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 NLP+ L LF G + AE + +E+GQ G V + +AD I+ N Y+ Sbjct: 355 NLPFSTARSDLFDLFGPIGKINNAE-LKPQENGQPTGVAVVEYENLVDADFCIQKLNNYN 413 Query: 213 ISGRLLNVNRA 245 G L ++ A Sbjct: 414 YGGCSLQISYA 424
>RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 758 Score = 68.9 bits (167), Expect = 1e-11 Identities = 47/185 (25%), Positives = 85/185 (45%), Gaps = 16/185 (8%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G LP SE+L +LF Q G V+ V+ + S RGFG+VT S +E+ +A++ + Sbjct: 8 GRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEITTF 67 Query: 210 D--------ISGRLLNVNRAAQRGSRVERPPRQ--------FASSFRAYVGNLPWQAEDS 341 + +L N + + E P ++ R + NL ++ + Sbjct: 68 EGCKINVTVAKKKLRNKTKEKGKNENSECPKKEPKAKKAKVADKKARLIIRNLSFKCSED 127 Query: 342 RLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVN 521 L +F++ G V+ I + G+ RGFGFV + + A+ ++ +E+ GR + V+ Sbjct: 128 DLKTVFAQFGAVLEVNIP-RKPDGKMRGFGFVQFKNLLEAGKALKGMNMKEIKGRTVAVD 186 Query: 522 VAAER 536 A + Sbjct: 187 WAVAK 191 Score = 45.1 bits (105), Expect = 2e-04 Identities = 24/77 (31%), Positives = 42/77 (54%) Frame = +3 Query: 306 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 485 +VG LP A +L ++FS+ G V +V ++ + RGFG+VT + ED+ A+ + Sbjct: 6 FVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI- 64 Query: 486 GQEMDGRPLRVNVAAER 536 +G + V VA ++ Sbjct: 65 -TTFEGCKINVTVAKKK 80 Score = 42.7 bits (99), Expect = 9e-04 Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 6/133 (4%) Frame = +3 Query: 162 STIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDS 341 ST E+ DKA++ N+ + + P ++ NL + +E+ Sbjct: 307 STEEQEDKAVQVSNK------------------KKRKLPSDVNEGKTVFIRNLSFDSEEE 348 Query: 342 RLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD------GQEMDG 503 L ++ + GE+ IV +T S+G F ++E + A G ++DG Sbjct: 349 ELGELLQQFGELKYVRIVLHPDTEHSKGCAFAQFMTQEAAQKCLLAASPENEAGGLKLDG 408 Query: 504 RPLRVNVAAERPQ 542 R L+V++A R + Sbjct: 409 RQLKVDLAVTRDE 421
>MSI1H_HUMAN (O43347) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 68.6 bits (166), Expect = 1e-11 Identities = 45/159 (28%), Positives = 80/159 (50%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G L + E L + F Q G V+ V+ + + +SRGFGFVT DK + +R+ Sbjct: 25 GGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ-SRH 83 Query: 210 DISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNAT 389 ++ + ++ A R ++ P+ + + +VG L + Q F + G+V +A Sbjct: 84 ELDSKTIDPKVAFPRRAQ----PKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAM 139 Query: 390 IVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGR 506 +++D+ T R RGFGFVT S ED+ + + E++ + Sbjct: 140 LMFDKTTNRHRGFGFVTFES-EDIVEKVCEIHFHEINNK 177 Score = 50.8 bits (120), Expect = 3e-06 Identities = 27/79 (34%), Positives = 40/79 (50%) Frame = +3 Query: 300 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 479 + ++G L WQ L + F + GEV ++ D T RSRGFGFVT + +D + A Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVL-A 79 Query: 480 LDGQEMDGRPLRVNVAAER 536 E+D + + VA R Sbjct: 80 QSRHELDSKTIDPKVAFPR 98
>RBM28_MOUSE (Q8CGC6) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 749 Score = 68.6 bits (166), Expect = 1e-11 Identities = 45/185 (24%), Positives = 85/185 (45%), Gaps = 16/185 (8%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G LP S++L +LF Q G V+ V+ + S RGFG+VT S +E+ +A++ + Sbjct: 8 GRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEITTF 67 Query: 210 D--------ISGRLLNVNRAAQRGSRVERPPRQ--------FASSFRAYVGNLPWQAEDS 341 + +L N ++ ++ E P ++ R + NL ++ + Sbjct: 68 EGCKIDVTVAKKKLRNKSKETRKNENAESPKKEPKHKKAKVADKKARLIIRNLSFKCSED 127 Query: 342 RLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVN 521 L +F+ +G V+ I + G+ RGF FV + + A+ + +E+ GR + V+ Sbjct: 128 DLKAVFTHYGTVLEVNIP-KKPDGKMRGFAFVQFKNLLEAGKALKGANMKEIKGRTVAVD 186 Query: 522 VAAER 536 A + Sbjct: 187 WAVAK 191 Score = 44.3 bits (103), Expect = 3e-04 Identities = 24/77 (31%), Positives = 42/77 (54%) Frame = +3 Query: 306 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 485 +VG LP A +L ++FS+ G V +V ++ + RGFG+VT + ED+ A+ + Sbjct: 6 FVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI- 64 Query: 486 GQEMDGRPLRVNVAAER 536 +G + V VA ++ Sbjct: 65 -TTFEGCKIDVTVAKKK 80
>CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (xCIRP) Length = 163 Score = 68.2 bits (165), Expect = 2e-11 Identities = 30/78 (38%), Positives = 51/78 (65%) Frame = +3 Query: 300 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 479 + ++G L ++ + L Q F+++G + +V DRET RSRGFGFVT + +D A+ A Sbjct: 6 KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMA 65 Query: 480 LDGQEMDGRPLRVNVAAE 533 ++G+ +DGR +RV+ A + Sbjct: 66 MNGKSVDGRQIRVDQAGK 83 Score = 52.0 bits (123), Expect = 1e-06 Identities = 24/74 (32%), Positives = 43/74 (58%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G L ++ + + L Q F + G + V+ +RE+ +SRGFGFVT +++A A+ N Sbjct: 10 GGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAMNGK 69 Query: 210 DISGRLLNVNRAAQ 251 + GR + V++A + Sbjct: 70 SVDGRQIRVDQAGK 83
>ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1| Length = 346 Score = 67.0 bits (162), Expect = 4e-11 Identities = 43/150 (28%), Positives = 75/150 (50%), Gaps = 2/150 (1%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRE--SGQSRGFGFVTMSTIEEADKAIETFN 203 G L + + + + + Q G E+ ++I R+ + +SRGFGFVT S E D A++ Sbjct: 28 GGLTSNTTDDLMREFYSQFG--EITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQ-R 84 Query: 204 RYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVN 383 + I G+ ++ RA R + S+ R YV + + L + F+++G V Sbjct: 85 PHIIDGKTVDPKRAVPRDDKNRSESN--VSTKRLYVSGVREDHTEDMLTEYFTKYGTVTK 142 Query: 384 ATIVYDRETGRSRGFGFVTMASKEDLDSAI 473 + I+ D+ T + RGFGFVT + +D + Sbjct: 143 SEIILDKATQKPRGFGFVTFDDHDSVDQCV 172 Score = 50.4 bits (119), Expect = 4e-06 Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 4/71 (5%) Frame = +3 Query: 300 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS- 476 + +VG L D + + +S+ GE+ + ++ D T RSRGFGFVT + K ++D+A+ Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQ 83 Query: 477 ---ALDGQEMD 500 +DG+ +D Sbjct: 84 RPHIIDGKTVD 94
>ROA1_DROME (P07909) Heterogeneous nuclear ribonucleoprotein A1 (hnRNP core| protein A1-A) (PEN repeat clone P9) Length = 365 Score = 67.0 bits (162), Expect = 4e-11 Identities = 44/148 (29%), Positives = 71/148 (47%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G L Y E L F++ G + V+ + + +SRGFGF+T S D+A ++ + Sbjct: 36 GGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQKS-RPH 94 Query: 210 DISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNAT 389 I GR++ RA R P A+ + +VG L ++ + F G +V+ Sbjct: 95 KIDGRVVEPKRAVPRQDIDS--PNAGATVKKLFVGALKDDHDEQSIRDYFQHFGNIVDIN 152 Query: 390 IVYDRETGRSRGFGFVTMASKEDLDSAI 473 IV D+ETG+ RGF FV + +D + Sbjct: 153 IVIDKETGKKRGFAFVEFDDYDPVDKVV 180 Score = 46.6 bits (109), Expect = 6e-05 Identities = 24/79 (30%), Positives = 41/79 (51%) Frame = +3 Query: 300 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 479 + ++G L ++ D L F + G +V+ ++ D T RSRGFGF+T + +D A + Sbjct: 32 KLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQKS 91 Query: 480 LDGQEMDGRPLRVNVAAER 536 ++DGR + A R Sbjct: 92 RP-HKIDGRVVEPKRAVPR 109
>YG41_SCHPO (O60176) Hypothetical RNA-binding protein C23E6.01c in chromosome| II Length = 473 Score = 67.0 bits (162), Expect = 4e-11 Identities = 50/172 (29%), Positives = 85/172 (49%), Gaps = 3/172 (1%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G L V + Q+++ G ++I NR +G + G+ FV ++ EA A+ + N Sbjct: 98 GELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAM-SMNNK 156 Query: 210 DISG--RLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMF-SEHGEVV 380 I G L +N A+ G R + + AS + +VG+L + + +F S + Sbjct: 157 PIPGTNHLFKLNWASGGGLREKSISK--ASEYSIFVGDLSPNVNEFDVYSLFASRYNSCK 214 Query: 381 NATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAER 536 +A I+ D +T SRG+GFV + D SA++ + GQ RP+RV +A + Sbjct: 215 SAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPK 266
>FCA_ARATH (O04425) Flowering time control protein FCA| Length = 747 Score = 66.6 bits (161), Expect = 6e-11 Identities = 57/178 (32%), Positives = 90/178 (50%), Gaps = 5/178 (2%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF-NR 206 G++P E + F+Q G V +I ++ +GQ +G FV +T ++AD+AI N+ Sbjct: 125 GSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRALHNQ 184 Query: 207 YDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNA 386 + G V G R R F+ +VG+L QA + + ++F + G V + Sbjct: 185 ITLPGGTGPVQVRYADGER----ERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDV 240 Query: 387 TIVYDRETGRSRGFGFVTMASKEDLDSAISALDG-QEMDG--RPLRVNVA-AERPQRG 548 ++ D E +SRG GFV +SKE +AI L+G M G +PL V A +RP+ G Sbjct: 241 YLMRD-EYRQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKRPKPG 297 Score = 51.2 bits (121), Expect = 2e-06 Identities = 23/68 (33%), Positives = 40/68 (58%) Frame = +3 Query: 288 ASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDS 467 +S+ + +VG++P A + + F +HG V+ ++ D+ TG+ +G FV A+ +D D Sbjct: 117 SSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADR 176 Query: 468 AISALDGQ 491 AI AL Q Sbjct: 177 AIRALHNQ 184
>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 952 Score = 66.6 bits (161), Expect = 6e-11 Identities = 48/168 (28%), Positives = 78/168 (46%), Gaps = 12/168 (7%) Frame = +3 Query: 15 PRCTS--GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQ---SRGFGFVTMSTIEEA 179 P CT NL + E L +F + G ++ + + S GFGFV E+A Sbjct: 720 PGCTLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQA 779 Query: 180 DKAIETFNRYDISGRLLNVN------RAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDS 341 KA++ + + G L V + A +R ++ P++ +S + V N+P+QA Sbjct: 780 QKALKQLQGHTVDGHKLEVRISERATKPALTSTRKKQVPKKQTTS-KILVRNIPFQANQR 838 Query: 342 RLVQMFSEHGEVVNATIVYDRE-TGRSRGFGFVTMASKEDLDSAISAL 482 + ++FS GE+ + TG RGFGFV +K+D A +AL Sbjct: 839 EIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNAL 886 Score = 60.8 bits (146), Expect = 3e-09 Identities = 52/176 (29%), Positives = 77/176 (43%), Gaps = 16/176 (9%) Frame = +3 Query: 39 PYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYDIS 218 P++V + + + A + VA I G G+ FV +S+ EE KA++ NR + Sbjct: 301 PFNVTEKNVIEFL--APLKPVAIRIVRNAHGNKTGYVFVDLSSEEEVKKALKC-NRDYMG 357 Query: 219 GRLLNVNRAAQ----RGSRVERPPRQ------------FASSFRAYVGNLPWQAEDSRLV 350 GR + V R Q RG P Q A S R +V NL + + + L Sbjct: 358 GRYIEVFREKQAPTARGPPKSTTPWQGRTLGENEEEEDLADSGRLFVRNLSYTSSEEDLE 417 Query: 351 QMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRV 518 ++FS +G + D T + +GF FVT E A + +DGQ GR L V Sbjct: 418 KLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHV 473 Score = 38.1 bits (87), Expect = 0.021 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 3/77 (3%) Frame = +3 Query: 306 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGR---SRGFGFVTMASKEDLDSAIS 476 ++ NL + + L +FS+ G + + TI + S GFGFV E A+ Sbjct: 725 FIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALK 784 Query: 477 ALDGQEMDGRPLRVNVA 527 L G +DG L V ++ Sbjct: 785 QLQGHTVDGHKLEVRIS 801 Score = 36.6 bits (83), Expect = 0.062 Identities = 20/58 (34%), Positives = 31/58 (53%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNR 206 NLP + ER QLF G + + + ++ G+ R FGF+ + EEA A+ F+R Sbjct: 8 NLPNGMKEERFRQLFAAFGTLTDCSLKFTKD-GKFRKFGFIGFKSEEEAQAALNHFHR 64 Score = 35.4 bits (80), Expect = 0.14 Identities = 17/59 (28%), Positives = 35/59 (59%) Frame = +3 Query: 300 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS 476 R V NLP ++ R Q+F+ G + + ++ + ++ G+ R FGF+ S+E+ +A++ Sbjct: 3 RLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKD-GKFRKFGFIGFKSEEEAQAALN 60 Score = 32.0 bits (71), Expect = 1.5 Identities = 21/68 (30%), Positives = 30/68 (44%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 NL Y E L +LF G + + + + +GF FVT E A KA + Sbjct: 406 NLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQV 465 Query: 213 ISGRLLNV 236 GR+L+V Sbjct: 466 FQGRMLHV 473
>MSI1H_RAT (Q8K3P4) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 66.6 bits (161), Expect = 6e-11 Identities = 44/159 (27%), Positives = 79/159 (49%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G L + E L + F Q G V+ V+ + + +SRGFGFVT DK + +R+ Sbjct: 25 GGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ-SRH 83 Query: 210 DISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNAT 389 ++ + ++ A R ++ P+ + + +VG L + F + G+V +A Sbjct: 84 ELDSKTIDPKVAFPRRAQ----PKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAM 139 Query: 390 IVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGR 506 +++D+ T R RGFGFVT S ED+ + + E++ + Sbjct: 140 LMFDKTTNRHRGFGFVTFES-EDIVEKVCEIHFHEINNK 177 Score = 50.8 bits (120), Expect = 3e-06 Identities = 27/79 (34%), Positives = 40/79 (50%) Frame = +3 Query: 300 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 479 + ++G L WQ L + F + GEV ++ D T RSRGFGFVT + +D + A Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVL-A 79 Query: 480 LDGQEMDGRPLRVNVAAER 536 E+D + + VA R Sbjct: 80 QSRHELDSKTIDPKVAFPR 98
>MSI1H_MOUSE (Q61474) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 66.6 bits (161), Expect = 6e-11 Identities = 44/159 (27%), Positives = 79/159 (49%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G L + E L + F Q G V+ V+ + + +SRGFGFVT DK + +R+ Sbjct: 25 GGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ-SRH 83 Query: 210 DISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNAT 389 ++ + ++ A R ++ P+ + + +VG L + F + G+V +A Sbjct: 84 ELDSKTIDPKVAFPRRAQ----PKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAM 139 Query: 390 IVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGR 506 +++D+ T R RGFGFVT S ED+ + + E++ + Sbjct: 140 LMFDKTTNRHRGFGFVTFES-EDIVEKVCEIHFHEINNK 177 Score = 50.8 bits (120), Expect = 3e-06 Identities = 27/79 (34%), Positives = 40/79 (50%) Frame = +3 Query: 300 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 479 + ++G L WQ L + F + GEV ++ D T RSRGFGFVT + +D + A Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVL-A 79 Query: 480 LDGQEMDGRPLRVNVAAER 536 E+D + + VA R Sbjct: 80 QSRHELDSKTIDPKVAFPR 98
>HNRPM_MOUSE (Q9D0E1) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)| Length = 728 Score = 66.2 bits (160), Expect = 7e-11 Identities = 61/212 (28%), Positives = 94/212 (44%), Gaps = 40/212 (18%) Frame = +3 Query: 9 RRPRCTSGNLPYDVDSERLAQLF-DQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADK 185 +R R N+P+DV + L L ++ G V E++ + E G+SRG V E K Sbjct: 67 KRYRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAE-GKSRGCAVVEFKMEESMKK 125 Query: 186 AIETFNRYDISGRLLNVN---------RAAQR---------------------GSRVERP 275 A E N++ +SGR L V RA Q+ S + P Sbjct: 126 AAEVLNKHSLSGRPLKVKEDPDGEHARRAMQKVMATTGGMGMGPGGPGMINIPPSILNNP 185 Query: 276 --PRQFASSFRA-------YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGF 428 P + + +A +V NL ++ +L ++FS G VV A I+ D++ G+SRG Sbjct: 186 NIPNEIIHALQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD-GKSRGI 244 Query: 429 GFVTMASKEDLDSAISALDGQEMDGRPLRVNV 524 G VT + AIS +GQ + RP+ V + Sbjct: 245 GIVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 276 Score = 45.4 bits (106), Expect = 1e-04 Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 1/97 (1%) Frame = +3 Query: 231 NVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEH-GEVVNATIVYDRE 407 N+ R R P +++ RA++ N+P+ + L + E GEV ++ D E Sbjct: 51 NIKRGGNRFEPYSNPTKRY----RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAE 106 Query: 408 TGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRV 518 G+SRG V +E + A L+ + GRPL+V Sbjct: 107 -GKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKV 142 Score = 40.8 bits (94), Expect = 0.003 Identities = 23/68 (33%), Positives = 38/68 (55%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 NLP+D + L F++ G V A++ E+G+S+G G V + E A++A N Sbjct: 657 NLPFDFTWKMLKDKFNECGHVLYADI--KMENGKSKGCGVVKFESPEVAERACRMMNGMK 714 Query: 213 ISGRLLNV 236 +SGR ++V Sbjct: 715 LSGREIDV 722 Score = 39.7 bits (91), Expect = 0.007 Identities = 24/73 (32%), Positives = 37/73 (50%) Frame = +3 Query: 306 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 485 +V NLP+ L F+E G V+ A I E G+S+G G V S E + A ++ Sbjct: 654 FVRNLPFDFTWKMLKDKFNECGHVLYADI--KMENGKSKGCGVVKFESPEVAERACRMMN 711 Query: 486 GQEMDGRPLRVNV 524 G ++ GR + V + Sbjct: 712 GMKLSGREIDVRI 724
>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) Length = 153 Score = 66.2 bits (160), Expect = 7e-11 Identities = 33/85 (38%), Positives = 50/85 (58%), Gaps = 2/85 (2%) Frame = +3 Query: 300 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 479 + +VG L + ++ L FS G + +V DRET RSRGFGF+T + E A+ A Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRA 66 Query: 480 LDGQEMDGRPLRVNVAAE--RPQRG 548 ++G+ +DGR +RV+ A + R RG Sbjct: 67 MNGESLDGRQIRVDHAGKSARGSRG 91 Score = 53.1 bits (126), Expect = 6e-07 Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 2/80 (2%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G L ++ D + L F G + V+ +RE+ +SRGFGF+T + E A A+ N Sbjct: 11 GGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGE 70 Query: 210 DISGRLLNVNRAAQ--RGSR 263 + GR + V+ A + RGSR Sbjct: 71 SLDGRQIRVDHAGKSARGSR 90
>RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F (HRP36.1| protein) (Protein P11) Length = 385 Score = 65.9 bits (159), Expect = 1e-10 Identities = 43/148 (29%), Positives = 73/148 (49%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G L Y + L F++ G + V+ + ++ +SRGFGF+T S D A + + Sbjct: 29 GGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNA-QNARPH 87 Query: 210 DISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNAT 389 I GR + RA R + P A+ + +VG L ++ L + F + G++V+ Sbjct: 88 KIDGRTVEPKRAVPR--QEIDSPNAGATVKKLFVGGLRDDHDEECLREYFKDFGQIVSVN 145 Query: 390 IVYDRETGRSRGFGFVTMASKEDLDSAI 473 IV D++TG+ RGF F+ + +D I Sbjct: 146 IVSDKDTGKKRGFAFIEFDDYDPVDKII 173 Score = 48.5 bits (114), Expect = 2e-05 Identities = 25/81 (30%), Positives = 45/81 (55%) Frame = +3 Query: 300 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 479 + ++G L ++ D L F + G +V+ ++ D +T RSRGFGF+T + +D+A +A Sbjct: 25 KLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNAQNA 84 Query: 480 LDGQEMDGRPLRVNVAAERPQ 542 ++DGR + A R + Sbjct: 85 RP-HKIDGRTVEPKRAVPRQE 104
>RT19_ARATH (P39697) 40S ribosomal protein S19, mitochondrial precursor| Length = 212 Score = 65.9 bits (159), Expect = 1e-10 Identities = 33/82 (40%), Positives = 51/82 (62%) Frame = +3 Query: 294 SFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAI 473 S + Y+G L ++ L FS V A ++ ++ TGRSRG+GFV S++ +SAI Sbjct: 30 STKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAI 89 Query: 474 SALDGQEMDGRPLRVNVAAERP 539 SA++GQE++G + VNVA + P Sbjct: 90 SAMNGQELNGFNISVNVAKDWP 111 Score = 43.9 bits (102), Expect = 4e-04 Identities = 24/72 (33%), Positives = 37/72 (51%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G L D L F V A V+ N+ +G+SRG+GFV + + A+ AI N Sbjct: 36 GGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAMNGQ 95 Query: 210 DISGRLLNVNRA 245 +++G ++VN A Sbjct: 96 ELNGFNISVNVA 107
>RBM4_HUMAN (Q9BWF3) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) (Lark homolog) (hLark) Length = 364 Score = 65.5 bits (158), Expect = 1e-10 Identities = 48/169 (28%), Positives = 74/169 (43%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 GNLP + + + LF+Q G V ++I N +GFV + A+ AI + Y Sbjct: 7 GNLPREATEQEIRSLFEQYGKVLECDIIKN--------YGFVHIEDKTAAEDAIRNLHHY 58 Query: 210 DISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNAT 389 + G +N+N VE + +S + +VGN+ + L F E+G V+ Sbjct: 59 KLHG--VNIN--------VEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECD 108 Query: 390 IVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAER 536 IV D + FV M ED AI LD E G+ + V ++ R Sbjct: 109 IVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149 Score = 37.4 bits (85), Expect = 0.036 Identities = 20/79 (25%), Positives = 41/79 (51%) Frame = +3 Query: 300 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 479 + ++GNLP +A + + +F ++G+V+ I+ + +GFV + K + AI Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRN 54 Query: 480 LDGQEMDGRPLRVNVAAER 536 L ++ G + +NV A + Sbjct: 55 LHHYKLHG--VNINVEASK 71
>RBM4_MOUSE (Q8C7Q4) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) (Lark homolog) (mLark) Length = 361 Score = 65.5 bits (158), Expect = 1e-10 Identities = 48/169 (28%), Positives = 74/169 (43%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 GNLP + + + LF+Q G V ++I N +GFV + A+ AI + Y Sbjct: 7 GNLPREATEQEIRSLFEQYGKVLECDIIKN--------YGFVHIEDKTAAEDAIRNLHHY 58 Query: 210 DISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNAT 389 + G +N+N VE + +S + +VGN+ + L F E+G V+ Sbjct: 59 KLHG--VNIN--------VEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECD 108 Query: 390 IVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAER 536 IV D + FV M ED AI LD E G+ + V ++ R Sbjct: 109 IVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149 Score = 37.4 bits (85), Expect = 0.036 Identities = 20/79 (25%), Positives = 41/79 (51%) Frame = +3 Query: 300 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 479 + ++GNLP +A + + +F ++G+V+ I+ + +GFV + K + AI Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRN 54 Query: 480 LDGQEMDGRPLRVNVAAER 536 L ++ G + +NV A + Sbjct: 55 LHHYKLHG--VNINVEASK 71
>RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) (RNPL) Length = 157 Score = 65.5 bits (158), Expect = 1e-10 Identities = 35/90 (38%), Positives = 52/90 (57%), Gaps = 2/90 (2%) Frame = +3 Query: 300 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 479 + +VG L + ++ L FS G + +V DRET RSRGFGF+T + E A+ A Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRA 66 Query: 480 LDGQEMDGRPLRVNVAAE--RPQRGF*CGA 563 ++G+ +DGR +RV+ A + R RG GA Sbjct: 67 MNGESLDGRQIRVDHAGKSARGTRGGGFGA 96 Score = 51.6 bits (122), Expect = 2e-06 Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 2/80 (2%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G L ++ D + L F G + V+ +RE+ +SRGFGF+T + E A A+ N Sbjct: 11 GGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAMNGE 70 Query: 210 DISGRLLNVNRAAQ--RGSR 263 + GR + V+ A + RG+R Sbjct: 71 SLDGRQIRVDHAGKSARGTR 90
>HNRPM_HUMAN (P52272) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)| Length = 729 Score = 65.5 bits (158), Expect = 1e-10 Identities = 61/212 (28%), Positives = 94/212 (44%), Gaps = 40/212 (18%) Frame = +3 Query: 9 RRPRCTSGNLPYDVDSERLAQLF-DQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADK 185 +R R N+P+DV + L L ++ G V E++ + E G+SRG V E K Sbjct: 68 KRYRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAE-GKSRGCAVVEFKMEESMKK 126 Query: 186 AIETFNRYDISGRLLNVN---------RAAQR---------------------GSRVERP 275 A E N++ +SGR L V RA Q+ S + P Sbjct: 127 AAEVLNKHSLSGRPLKVKEDPDGEHARRAMQKVMATTGGMGMGPGGPGMITIPPSILNNP 186 Query: 276 --PRQFASSFRA-------YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGF 428 P + + +A +V NL ++ +L ++FS G VV A I+ D++ G+SRG Sbjct: 187 NIPNEIIHALQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD-GKSRGI 245 Query: 429 GFVTMASKEDLDSAISALDGQEMDGRPLRVNV 524 G VT + AIS +GQ + RP+ V + Sbjct: 246 GTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 277 Score = 45.1 bits (105), Expect = 2e-04 Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 1/97 (1%) Frame = +3 Query: 231 NVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEH-GEVVNATIVYDRE 407 N+ R R P +++ RA++ N+P+ + L + E GEV ++ D E Sbjct: 52 NIKRGGNRFEPYANPTKRY----RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAE 107 Query: 408 TGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRV 518 G+SRG V +E + A L+ + GRPL+V Sbjct: 108 -GKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKV 143 Score = 40.8 bits (94), Expect = 0.003 Identities = 23/68 (33%), Positives = 38/68 (55%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 NLP+D + L F++ G V A++ E+G+S+G G V + E A++A N Sbjct: 658 NLPFDFTWKMLKDKFNECGHVLYADI--KMENGKSKGCGVVKFESPEVAERACRMMNGMK 715 Query: 213 ISGRLLNV 236 +SGR ++V Sbjct: 716 LSGREIDV 723 Score = 39.7 bits (91), Expect = 0.007 Identities = 24/73 (32%), Positives = 37/73 (50%) Frame = +3 Query: 306 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 485 +V NLP+ L F+E G V+ A I E G+S+G G V S E + A ++ Sbjct: 655 FVRNLPFDFTWKMLKDKFNECGHVLYADI--KMENGKSKGCGVVKFESPEVAERACRMMN 712 Query: 486 GQEMDGRPLRVNV 524 G ++ GR + V + Sbjct: 713 GMKLSGREIDVRI 725
>RBM4_RABIT (Q9BDY9) RNA-binding protein 4 (RNA-binding motif protein 4) (Lark| homolog) Length = 359 Score = 65.5 bits (158), Expect = 1e-10 Identities = 48/169 (28%), Positives = 74/169 (43%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 GNLP + + + LF+Q G V ++I N +GFV + A+ AI + Y Sbjct: 7 GNLPREATEQEIRSLFEQYGKVLECDIIKN--------YGFVHIEDKTAAEDAIRNLHHY 58 Query: 210 DISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNAT 389 + G +N+N VE + +S + +VGN+ + L F E+G V+ Sbjct: 59 KLHG--VNIN--------VEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECD 108 Query: 390 IVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAER 536 IV D + FV M ED AI LD E G+ + V ++ R Sbjct: 109 IVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149 Score = 37.4 bits (85), Expect = 0.036 Identities = 20/79 (25%), Positives = 41/79 (51%) Frame = +3 Query: 300 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 479 + ++GNLP +A + + +F ++G+V+ I+ + +GFV + K + AI Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRN 54 Query: 480 LDGQEMDGRPLRVNVAAER 536 L ++ G + +NV A + Sbjct: 55 LHHYKLHG--VNINVEASK 71
>RBM4B_HUMAN (Q9BQ04) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) Length = 359 Score = 65.5 bits (158), Expect = 1e-10 Identities = 48/169 (28%), Positives = 74/169 (43%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 GNLP + + + LF+Q G V ++I N +GFV + A+ AI + Y Sbjct: 7 GNLPREATEQEIRSLFEQYGKVLECDIIKN--------YGFVHIEDKTAAEDAIRNLHHY 58 Query: 210 DISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNAT 389 + G +N+N VE + +S + +VGN+ + L F E+G V+ Sbjct: 59 KLHG--VNIN--------VEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECD 108 Query: 390 IVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAER 536 IV D + FV M ED AI LD E G+ + V ++ R Sbjct: 109 IVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149 Score = 37.4 bits (85), Expect = 0.036 Identities = 20/79 (25%), Positives = 41/79 (51%) Frame = +3 Query: 300 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 479 + ++GNLP +A + + +F ++G+V+ I+ + +GFV + K + AI Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRN 54 Query: 480 LDGQEMDGRPLRVNVAAER 536 L ++ G + +NV A + Sbjct: 55 LHHYKLHG--VNINVEASK 71
>RBM4B_RAT (Q64LC9) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) (Zinc-responsive protein ZD7) Length = 357 Score = 65.5 bits (158), Expect = 1e-10 Identities = 48/169 (28%), Positives = 74/169 (43%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 GNLP + + + LF+Q G V ++I N +GFV + A+ AI + Y Sbjct: 7 GNLPREATEQEIRSLFEQYGKVLECDIIKN--------YGFVHIEDKTAAEDAIRNLHHY 58 Query: 210 DISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNAT 389 + G +N+N VE + +S + +VGN+ + L F E+G V+ Sbjct: 59 KLHG--VNIN--------VEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECD 108 Query: 390 IVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAER 536 IV D + FV M ED AI LD E G+ + V ++ R Sbjct: 109 IVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149 Score = 37.4 bits (85), Expect = 0.036 Identities = 20/79 (25%), Positives = 41/79 (51%) Frame = +3 Query: 300 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 479 + ++GNLP +A + + +F ++G+V+ I+ + +GFV + K + AI Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRN 54 Query: 480 LDGQEMDGRPLRVNVAAER 536 L ++ G + +NV A + Sbjct: 55 LHHYKLHG--VNINVEASK 71
>RBM4B_MOUSE (Q8VE92) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) Length = 357 Score = 65.5 bits (158), Expect = 1e-10 Identities = 48/169 (28%), Positives = 74/169 (43%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 GNLP + + + LF+Q G V ++I N +GFV + A+ AI + Y Sbjct: 7 GNLPREATEQEIRSLFEQYGKVLECDIIKN--------YGFVHIEDKTAAEDAIRNLHHY 58 Query: 210 DISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNAT 389 + G +N+N VE + +S + +VGN+ + L F E+G V+ Sbjct: 59 KLHG--VNIN--------VEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECD 108 Query: 390 IVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAER 536 IV D + FV M ED AI LD E G+ + V ++ R Sbjct: 109 IVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149 Score = 37.4 bits (85), Expect = 0.036 Identities = 20/79 (25%), Positives = 41/79 (51%) Frame = +3 Query: 300 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 479 + ++GNLP +A + + +F ++G+V+ I+ + +GFV + K + AI Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRN 54 Query: 480 LDGQEMDGRPLRVNVAAER 536 L ++ G + +NV A + Sbjct: 55 LHHYKLHG--VNINVEASK 71
>RBM4_BOVIN (Q3MHX3) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) Length = 362 Score = 65.5 bits (158), Expect = 1e-10 Identities = 48/169 (28%), Positives = 74/169 (43%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 GNLP + + + LF+Q G V ++I N +GFV + A+ AI + Y Sbjct: 7 GNLPREATEQEIRSLFEQYGKVLECDIIKN--------YGFVHIEDKTAAEDAIRNLHHY 58 Query: 210 DISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNAT 389 + G +N+N VE + +S + +VGN+ + L F E+G V+ Sbjct: 59 KLHG--VNIN--------VEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECD 108 Query: 390 IVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAER 536 IV D + FV M ED AI LD E G+ + V ++ R Sbjct: 109 IVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149 Score = 37.4 bits (85), Expect = 0.036 Identities = 20/79 (25%), Positives = 41/79 (51%) Frame = +3 Query: 300 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 479 + ++GNLP +A + + +F ++G+V+ I+ + +GFV + K + AI Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRN 54 Query: 480 LDGQEMDGRPLRVNVAAER 536 L ++ G + +NV A + Sbjct: 55 LHHYKLHG--VNINVEASK 71
>NOP4_YEAST (P37838) Nucleolar protein NOP4 (Nucleolar protein NOP77)| Length = 685 Score = 65.1 bits (157), Expect = 2e-10 Identities = 50/197 (25%), Positives = 89/197 (45%), Gaps = 29/197 (14%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 ++P DV E+LA F ++ A V+ + +SRGFGFV+ + ++ +A+ + Sbjct: 32 SIPQDVTDEQLADFFSNFAPIKHAVVVKDTNK-RSRGFGFVSFAVEDDTKEALAKARKTK 90 Query: 213 ISGRLLNVNRAAQRGSR------VERPPRQFASSF----------------------RAY 308 +G +L V+ A +R VE+ + + + Sbjct: 91 FNGHILRVDIAKRRDRSKKTSEVVEKSTPESSEKITGQNNEDEDDADGEDSMLKGKPKLI 150 Query: 309 VGNLPWQAEDS-RLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 485 + N+PW D +L ++F +G VV ATI R+ G+ GF FVTM + A+ Sbjct: 151 IRNMPWSCRDPVKLKKIFGRYGTVVEATIPRKRD-GKLCGFAFVTMKKISNCRIALENTK 209 Query: 486 GQEMDGRPLRVNVAAER 536 ++DGR + V+ A ++ Sbjct: 210 DLKIDGRKVAVDFAVQK 226 Score = 49.3 bits (116), Expect = 9e-06 Identities = 26/77 (33%), Positives = 42/77 (54%) Frame = +3 Query: 306 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 485 +V ++P D +L FS + +A +V D RSRGFGFV+ A ++D A++ Sbjct: 29 FVRSIPQDVTDEQLADFFSNFAPIKHAVVVKDTNK-RSRGFGFVSFAVEDDTKEALAKAR 87 Query: 486 GQEMDGRPLRVNVAAER 536 + +G LRV++A R Sbjct: 88 KTKFNGHILRVDIAKRR 104 Score = 48.1 bits (113), Expect = 2e-05 Identities = 46/204 (22%), Positives = 72/204 (35%), Gaps = 50/204 (24%) Frame = +3 Query: 12 RPRCTSGNLPYDV-DSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKA 188 +P+ N+P+ D +L ++F + G V V I + G+ GF FVTM I A Sbjct: 146 KPKLIIRNMPWSCRDPVKLKKIFGRYGTV-VEATIPRKRDGKLCGFAFVTMKKISNCRIA 204 Query: 189 IETFNRYDISGRLLNVNRAAQ--------------------------------------- 251 +E I GR + V+ A Q Sbjct: 205 LENTKDLKIDGRKVAVDFAVQKNRWEDYKKAQPEMNDKDDNESGNEDAEENHDDEEDENE 264 Query: 252 ----------RGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYD 401 + +R + F +V N+P+ A + L FS+ G V A V D Sbjct: 265 EEDRQVDQASKNKESKRKAQNKREDFSVFVRNVPYDATEESLAPHFSKFGSVKYALPVID 324 Query: 402 RETGRSRGFGFVTMASKEDLDSAI 473 + TG ++G FV + + I Sbjct: 325 KSTGLAKGTAFVAFKDQYTYNECI 348 Score = 33.5 bits (75), Expect = 0.52 Identities = 35/138 (25%), Positives = 59/138 (42%), Gaps = 15/138 (10%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTM-------STIEEADKAI 191 N+PYD E LA F + G V+ A + ++ +G ++G FV I+ A A Sbjct: 296 NVPYDATEESLAPHFSKFGSVKYALPVIDKSTGLAKGTAFVAFKDQYTYNECIKNAPAAG 355 Query: 192 ET--------FNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRL 347 T Y GR+L++ R R + A+ + +G P + +D R Sbjct: 356 STSLLIGDDVMPEYVYEGRVLSITPTLVR-EDAGRMAEKNAAKRKEALGKAPGE-KDRRN 413 Query: 348 VQMFSEHGEVVNATIVYD 401 + + +E G VV + + D Sbjct: 414 LYLLNE-GRVVEGSKMAD 430
>RB97D_DROME (Q02926) Ribonucleoprotein RB97D| Length = 471 Score = 63.5 bits (153), Expect = 5e-10 Identities = 46/148 (31%), Positives = 71/148 (47%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G PY + E L + Q G V V+ + + +SRGFGF+T + D+A E + Sbjct: 38 GLAPYTTE-ENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQEN-RPH 95 Query: 210 DISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNAT 389 I G+ + RA R R R S + +VG L ++ L + F + G VV+ Sbjct: 96 IIDGKTVEAKRALPRPERESRETN--ISVKKLFVGGLKDNHDEECLREYFLQFGNVVSVK 153 Query: 390 IVYDRETGRSRGFGFVTMASKEDLDSAI 473 ++ D+ TG+ RGF FV + +D AI Sbjct: 154 LLTDKTTGKRRGFAFVEFDDYDAVDKAI 181 Score = 42.7 bits (99), Expect = 9e-04 Identities = 24/82 (29%), Positives = 40/82 (48%) Frame = +3 Query: 300 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 479 + ++G L + L + + G+VV+ ++ D T RSRGFGF+T +D A Sbjct: 33 KLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRA-QE 91 Query: 480 LDGQEMDGRPLRVNVAAERPQR 545 +DG+ + A RP+R Sbjct: 92 NRPHIIDGKTVEAKRALPRPER 113
>MSI2H_HUMAN (Q96DH6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 328 Score = 62.8 bits (151), Expect = 8e-10 Identities = 40/159 (25%), Positives = 76/159 (47%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G L + + L F + G + V+ + + +SRGFGFVT + DK + + Sbjct: 26 GGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ-PHH 84 Query: 210 DISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNAT 389 ++ + ++ A R ++ P+ + + +VG L + Q F + G+V +A Sbjct: 85 ELDSKTIDPKVAFPRRAQ----PKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAM 140 Query: 390 IVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGR 506 +++D+ T R RGFGFVT ED+ + + E++ + Sbjct: 141 LMFDKTTNRHRGFGFVTF-ENEDVVEKVCEIHFHEINNK 178 Score = 51.6 bits (122), Expect = 2e-06 Identities = 27/79 (34%), Positives = 39/79 (49%) Frame = +3 Query: 300 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 479 + ++G L WQ L FS+ GE+ ++ D T RSRGFGFVT A +D + Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81 Query: 480 LDGQEMDGRPLRVNVAAER 536 E+D + + VA R Sbjct: 82 -PHHELDSKTIDPKVAFPR 99
>MSI2H_MOUSE (Q920Q6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 346 Score = 62.8 bits (151), Expect = 8e-10 Identities = 40/159 (25%), Positives = 76/159 (47%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G L + + L F + G + V+ + + +SRGFGFVT + DK + + Sbjct: 26 GGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ-PHH 84 Query: 210 DISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNAT 389 ++ + ++ A R ++ P+ + + +VG L + Q F + G+V +A Sbjct: 85 ELDSKTIDPKVAFPRRAQ----PKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAM 140 Query: 390 IVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGR 506 +++D+ T R RGFGFVT ED+ + + E++ + Sbjct: 141 LMFDKTTNRHRGFGFVTF-ENEDVVEKVCEIHFHEINNK 178 Score = 51.6 bits (122), Expect = 2e-06 Identities = 27/79 (34%), Positives = 39/79 (49%) Frame = +3 Query: 300 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 479 + ++G L WQ L FS+ GE+ ++ D T RSRGFGFVT A +D + Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81 Query: 480 LDGQEMDGRPLRVNVAAER 536 E+D + + VA R Sbjct: 82 -PHHELDSKTIDPKVAFPR 99
>HRB1_YEAST (P38922) Protein HRB1 (Protein TOM34)| Length = 429 Score = 62.4 bits (150), Expect = 1e-09 Identities = 51/171 (29%), Positives = 74/171 (43%), Gaps = 8/171 (4%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 GNL YD E L + F Q G V A++I +R G RG G V + ++ D+AI ++ Sbjct: 141 GNLTYDSTPEDLTEFFSQIGKVVRADIITSR--GHHRGMGTVEFTNSDDVDRAIRQYDGA 198 Query: 210 DISGRLLNV--------NRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSE 365 R + V N +R + R + V NLP L +F E Sbjct: 199 FFMDRKIFVRQDNPPPSNNIKERKALDRGELRHNRKTHEVIVKNLPASVNWQALKDIFKE 258 Query: 366 HGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRV 518 G V +A + D + G S G G V+ +DL AI +G ++G L V Sbjct: 259 CGNVAHADVELDGD-GVSTGSGTVSFYDIKDLHRAIEKYNGYSIEGNVLDV 308 Score = 59.7 bits (143), Expect = 7e-09 Identities = 52/187 (27%), Positives = 78/187 (41%), Gaps = 22/187 (11%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 NLP V+ + L +F + G V A+V + + G S G G V+ I++ +AIE +N Y Sbjct: 242 NLPASVNWQALKDIFKECGNVAHADVELDGD-GVSTGSGTVSFYDIKDLHRAIEKYNGYS 300 Query: 213 ISGRLLNVNRAAQ--------------RGSRVERPPRQFASSFRA--------YVGNLPW 326 I G +L+V S V R+F + Y NLP+ Sbjct: 301 IEGNVLDVKSKESVHNHSDGDDVDIPMDDSPVNEEARKFTENVVGGGERNRLIYCSNLPF 360 Query: 327 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGR 506 S L +F G+V NA + YD + G G V + +D D I L+ G Sbjct: 361 STAKSDLYDLFETIGKVNNAELRYDSK-GAPTGIAVVEYDNVDDADVCIERLNNYNYGGC 419 Query: 507 PLRVNVA 527 L ++ A Sbjct: 420 DLDISYA 426 Score = 47.0 bits (110), Expect = 5e-05 Identities = 27/74 (36%), Positives = 41/74 (55%) Frame = +3 Query: 267 ERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMA 446 E+ R +++S +VGNL + + L + FS+ G+VV A I+ R G RG G V Sbjct: 128 EKVNRNYSNSI--FVGNLTYDSTPEDLTEFFSQIGKVVRADIITSR--GHHRGMGTVEFT 183 Query: 447 SKEDLDSAISALDG 488 + +D+D AI DG Sbjct: 184 NSDDVDRAIRQYDG 197
>SQD_DROME (Q08473) RNA-binding protein squid (Heterogeneous nuclear| ribonucleoprotein 40) (HNRNP 40) Length = 344 Score = 61.6 bits (148), Expect = 2e-09 Identities = 37/171 (21%), Positives = 80/171 (46%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G L ++ + L F + G +E V + ++G+SRGF F+ + E DK + + + Sbjct: 61 GGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDK-VSAADEH 119 Query: 210 DISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNAT 389 I+ + ++ +A R ++ +VG L + D + F + G +V Sbjct: 120 IINSKKVDPKKAKARHGKI-------------FVGGLTTEISDEEIKTYFGQFGNIVEVE 166 Query: 390 IVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQ 542 + +D++ + +GF F+T S++ + + Q++ G+ + V A +P+ Sbjct: 167 MPFDKQKSQRKGFCFITFDSEQVVTDLLKT-PKQKIAGKEVDVKRATPKPE 216 Score = 50.8 bits (120), Expect = 3e-06 Identities = 27/91 (29%), Positives = 46/91 (50%) Frame = +3 Query: 300 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 479 + +VG L W+ + L F ++GE+ + + D +TGRSRGF F+ + E +D +SA Sbjct: 57 KLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDK-VSA 115 Query: 480 LDGQEMDGRPLRVNVAAERPQRGF*CGAAAE 572 D ++ + + A R + F G E Sbjct: 116 ADEHIINSKKVDPKKAKARHGKIFVGGLTTE 146 Score = 36.2 bits (82), Expect = 0.081 Identities = 19/84 (22%), Positives = 42/84 (50%) Frame = +3 Query: 3 EGRRPRCTSGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEAD 182 + R + G L ++ E + F Q G + E+ ++++ Q +GF F+T + + Sbjct: 132 KARHGKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVT 191 Query: 183 KAIETFNRYDISGRLLNVNRAAQR 254 ++T + I+G+ ++V RA + Sbjct: 192 DLLKT-PKQKIAGKEVDVKRATPK 214
>SFRS2_CHICK (P30352) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 221 Score = 61.2 bits (147), Expect = 2e-09 Identities = 33/86 (38%), Positives = 45/86 (52%) Frame = +3 Query: 270 RPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMAS 449 RPP V NL ++ L ++F ++G V + I DR T SRGF FV Sbjct: 5 RPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 64 Query: 450 KEDLDSAISALDGQEMDGRPLRVNVA 527 K D + A+ A+DG +DGR LRV +A Sbjct: 65 KRDAEDAMDAMDGAVLDGRELRVQMA 90 Score = 41.6 bits (96), Expect = 0.002 Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 6/94 (6%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 NL Y + L ++F++ G V + +R + +SRGF FV +A+ A++ + Sbjct: 20 NLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAV 79 Query: 213 ISGRLLNVNRAA------QRGSRVERPPRQFASS 296 + GR L V A SR PPR++ SS Sbjct: 80 LDGRELRVQMARYGRPPDSHHSRRGPPPRRYGSS 113
>SFRS2_RAT (Q6PDU1) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 61.2 bits (147), Expect = 2e-09 Identities = 33/86 (38%), Positives = 45/86 (52%) Frame = +3 Query: 270 RPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMAS 449 RPP V NL ++ L ++F ++G V + I DR T SRGF FV Sbjct: 4 RPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 63 Query: 450 KEDLDSAISALDGQEMDGRPLRVNVA 527 K D + A+ A+DG +DGR LRV +A Sbjct: 64 KRDAEDAMDAMDGAVLDGRELRVQMA 89 Score = 38.5 bits (88), Expect = 0.016 Identities = 25/82 (30%), Positives = 40/82 (48%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 NL Y + L ++F++ G V + +R + +SRGF FV +A+ A++ + Sbjct: 19 NLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAV 78 Query: 213 ISGRLLNVNRAAQRGSRVERPP 278 + GR L V A R RPP Sbjct: 79 LDGRELRVQMA-----RYGRPP 95
>SFRS2_PANTR (Q5R1W5) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 61.2 bits (147), Expect = 2e-09 Identities = 33/86 (38%), Positives = 45/86 (52%) Frame = +3 Query: 270 RPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMAS 449 RPP V NL ++ L ++F ++G V + I DR T SRGF FV Sbjct: 4 RPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 63 Query: 450 KEDLDSAISALDGQEMDGRPLRVNVA 527 K D + A+ A+DG +DGR LRV +A Sbjct: 64 KRDAEDAMDAMDGAVLDGRELRVQMA 89 Score = 38.5 bits (88), Expect = 0.016 Identities = 25/82 (30%), Positives = 40/82 (48%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 NL Y + L ++F++ G V + +R + +SRGF FV +A+ A++ + Sbjct: 19 NLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAV 78 Query: 213 ISGRLLNVNRAAQRGSRVERPP 278 + GR L V A R RPP Sbjct: 79 LDGRELRVQMA-----RYGRPP 95
>SFRS2_MOUSE (Q62093) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) (Putative myelin regulatory factor 1) (MRF-1) Length = 220 Score = 61.2 bits (147), Expect = 2e-09 Identities = 33/86 (38%), Positives = 45/86 (52%) Frame = +3 Query: 270 RPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMAS 449 RPP V NL ++ L ++F ++G V + I DR T SRGF FV Sbjct: 4 RPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 63 Query: 450 KEDLDSAISALDGQEMDGRPLRVNVA 527 K D + A+ A+DG +DGR LRV +A Sbjct: 64 KRDAEDAMDAMDGAVLDGRELRVQMA 89 Score = 38.5 bits (88), Expect = 0.016 Identities = 25/82 (30%), Positives = 40/82 (48%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 NL Y + L ++F++ G V + +R + +SRGF FV +A+ A++ + Sbjct: 19 NLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAV 78 Query: 213 ISGRLLNVNRAAQRGSRVERPP 278 + GR L V A R RPP Sbjct: 79 LDGRELRVQMA-----RYGRPP 95
>SFRS2_HUMAN (Q01130) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 220 Score = 61.2 bits (147), Expect = 2e-09 Identities = 33/86 (38%), Positives = 45/86 (52%) Frame = +3 Query: 270 RPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMAS 449 RPP V NL ++ L ++F ++G V + I DR T SRGF FV Sbjct: 4 RPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 63 Query: 450 KEDLDSAISALDGQEMDGRPLRVNVA 527 K D + A+ A+DG +DGR LRV +A Sbjct: 64 KRDAEDAMDAMDGAVLDGRELRVQMA 89 Score = 38.5 bits (88), Expect = 0.016 Identities = 25/82 (30%), Positives = 40/82 (48%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 NL Y + L ++F++ G V + +R + +SRGF FV +A+ A++ + Sbjct: 19 NLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAV 78 Query: 213 ISGRLLNVNRAAQRGSRVERPP 278 + GR L V A R RPP Sbjct: 79 LDGRELRVQMA-----RYGRPP 95
>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1| Length = 841 Score = 61.2 bits (147), Expect = 2e-09 Identities = 47/176 (26%), Positives = 87/176 (49%), Gaps = 6/176 (3%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYN---RESGQ--SRGFGFVTMSTIEEADKAIET 197 NL + + L+ LF VA V + SG+ S GFGFV T E+A+ AI T Sbjct: 623 NLNFATTVQALSDLFKPLPGFVVATVKTKPDPKNSGKTLSMGFGFVEFRTKEQANVAIST 682 Query: 198 FNRYDISGRLLNVNRAAQRGSRVERPP-RQFASSFRAYVGNLPWQAEDSRLVQMFSEHGE 374 + + + G L + + ++G+ ++ S + + NLP++A L+++F G+ Sbjct: 683 LDGHVLDGHKLQLKLSHKQGTGTSASSIKKSGKSSKIIIKNLPFEATRKDLLELFGAFGQ 742 Query: 375 VVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQ 542 + + + + +RGF FV ++ ++A+S L+G + GR L + A + P+ Sbjct: 743 LKSVRVPKKFDQS-ARGFAFVEFNLMKEAETAMSQLEGVHLLGRRLVMQYAEQDPE 797 Score = 50.8 bits (120), Expect = 3e-06 Identities = 25/84 (29%), Positives = 44/84 (52%) Frame = +3 Query: 267 ERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMA 446 E+ ++ + R ++ N+ ++A + +FS++G + I D TG+S+GF +V Sbjct: 300 EQIAQKIEETGRLFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQFL 359 Query: 447 SKEDLDSAISALDGQEMDGRPLRV 518 KED A +LD Q GR L + Sbjct: 360 KKEDATRAYRSLDKQIFQGRLLHI 383 Score = 43.9 bits (102), Expect = 4e-04 Identities = 20/68 (29%), Positives = 36/68 (52%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 N+ Y+ E LF Q G +E + + +G+S+GF +V E+A +A + ++ Sbjct: 316 NISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQFLKKEDATRAYRSLDKQI 375 Query: 213 ISGRLLNV 236 GRLL++ Sbjct: 376 FQGRLLHI 383 Score = 37.7 bits (86), Expect = 0.028 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 5/79 (6%) Frame = +3 Query: 306 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYD---RETGR--SRGFGFVTMASKEDLDSA 470 +V NL + L +F V AT+ + +G+ S GFGFV +KE + A Sbjct: 620 FVKNLNFATTVQALSDLFKPLPGFVVATVKTKPDPKNSGKTLSMGFGFVEFRTKEQANVA 679 Query: 471 ISALDGQEMDGRPLRVNVA 527 IS LDG +DG L++ ++ Sbjct: 680 ISTLDGHVLDGHKLQLKLS 698 Score = 35.0 bits (79), Expect = 0.18 Identities = 23/88 (26%), Positives = 40/88 (45%) Frame = +3 Query: 6 GRRPRCTSGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADK 185 G+ + NLP++ + L +LF G ++ V + +RGF FV + ++EA+ Sbjct: 714 GKSSKIIIKNLPFEATRKDLLELFGAFGQLKSVRVPKKFDQS-ARGFAFVEFNLMKEAET 772 Query: 186 AIETFNRYDISGRLLNVNRAAQRGSRVE 269 A+ + GR L + A Q E Sbjct: 773 AMSQLEGVHLLGRRLVMQYAEQDPENAE 800 Score = 34.3 bits (77), Expect = 0.31 Identities = 20/70 (28%), Positives = 37/70 (52%) Frame = +3 Query: 36 LPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYDI 215 LP E+L + F + G V +++ R +G+SR F F+ + + A++A++ FN+ I Sbjct: 9 LPKYYTEEKLREFFSKQGDVTDVKLMKKR-NGESRKFAFIGYKSADAAERAVKYFNKSFI 67 Query: 216 SGRLLNVNRA 245 + V A Sbjct: 68 DTARIEVEFA 77
>RNPC1_MOUSE (Q62176) RNA-binding region-containing protein 1 (ssDNA binding| protein SEB4) Length = 237 Score = 60.5 bits (145), Expect = 4e-09 Identities = 30/76 (39%), Positives = 45/76 (59%) Frame = +3 Query: 300 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 479 + +VG LP+ D+ L + F G++ A ++ DR+TG+SRG+GFVTMA + D A Sbjct: 33 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAADRACKD 92 Query: 480 LDGQEMDGRPLRVNVA 527 +DGR VN+A Sbjct: 93 -PNPIIDGRKANVNLA 107 Score = 55.1 bits (131), Expect = 2e-07 Identities = 32/72 (44%), Positives = 43/72 (59%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G LPY L + F+ G +E A VI +R++G+SRG+GFVTM+ AD+A + N Sbjct: 37 GGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAADRACKDPNPI 96 Query: 210 DISGRLLNVNRA 245 I GR NVN A Sbjct: 97 -IDGRKANVNLA 107
>RBM34_MOUSE (Q8C5L7) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 375 Score = 60.1 bits (144), Expect = 5e-09 Identities = 50/180 (27%), Positives = 78/180 (43%), Gaps = 17/180 (9%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVE-----------------VAEVIYNRESGQSRGFGFVT 158 GNLP + ++L F + G VE +A + Q +V Sbjct: 194 GNLPVTCNKKKLKSFFKEYGQVESVRFRSVMPAEGTLTKKLAAIKRKFHPDQKSINAYVV 253 Query: 159 MSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAED 338 A KA++ G + V+ A++ SR +R +VGNLP++ ED Sbjct: 254 FKDESAAAKALQRNGAQIAEGFRIRVDLASETASRDKRS---------VFVGNLPYKIED 304 Query: 339 SRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRV 518 S L + F + G +V IV + TG RGFG+V + + + A+ L+ E+ GR LRV Sbjct: 305 SALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLALK-LNNSELMGRKLRV 363
>HNRPD_MOUSE (Q60668) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 60.1 bits (144), Expect = 5e-09 Identities = 37/142 (26%), Positives = 69/142 (48%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G L +D + L F + G V + + +G+SRGFGFV E DK ++ + Sbjct: 102 GGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ-KEH 160 Query: 210 DISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNAT 389 ++G++++ RA + + + P + + +VG L + ++ + F GEV + Sbjct: 161 KLNGKVIDPKRA--KAMKTKEPVK------KIFVGGLSPDTPEEKIREYFGGFGEVESIE 212 Query: 390 IVYDRETGRSRGFGFVTMASKE 455 + D +T + RGF F+T +E Sbjct: 213 LPMDNKTNKRRGFCFITFKEEE 234 Score = 53.1 bits (126), Expect = 6e-07 Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 4/97 (4%) Frame = +3 Query: 297 FRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS 476 ++ ++G L W L FS+ GEVV+ T+ D TGRSRGFGFV E +D + Sbjct: 97 WKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMD 156 Query: 477 ----ALDGQEMDGRPLRVNVAAERPQRGF*CGAAAES 575 L+G+ +D + + E ++ F G + ++ Sbjct: 157 QKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDT 193 Score = 32.7 bits (73), Expect = 0.89 Identities = 17/55 (30%), Positives = 27/55 (49%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIE 194 G L D E++ + F G VE E+ + ++ + RGF F+T E K +E Sbjct: 187 GGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241
>HNRPD_HUMAN (Q14103) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 60.1 bits (144), Expect = 5e-09 Identities = 37/142 (26%), Positives = 69/142 (48%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G L +D + L F + G V + + +G+SRGFGFV E DK ++ + Sbjct: 102 GGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ-KEH 160 Query: 210 DISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNAT 389 ++G++++ RA + + + P + + +VG L + ++ + F GEV + Sbjct: 161 KLNGKVIDPKRA--KAMKTKEPVK------KIFVGGLSPDTPEEKIREYFGGFGEVESIE 212 Query: 390 IVYDRETGRSRGFGFVTMASKE 455 + D +T + RGF F+T +E Sbjct: 213 LPMDNKTNKRRGFCFITFKEEE 234 Score = 53.1 bits (126), Expect = 6e-07 Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 4/97 (4%) Frame = +3 Query: 297 FRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS 476 ++ ++G L W L FS+ GEVV+ T+ D TGRSRGFGFV E +D + Sbjct: 97 WKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMD 156 Query: 477 ----ALDGQEMDGRPLRVNVAAERPQRGF*CGAAAES 575 L+G+ +D + + E ++ F G + ++ Sbjct: 157 QKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDT 193 Score = 32.7 bits (73), Expect = 0.89 Identities = 17/55 (30%), Positives = 27/55 (49%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIE 194 G L D E++ + F G VE E+ + ++ + RGF F+T E K +E Sbjct: 187 GGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241
>A2BP1_MOUSE (Q9JJ43) Ataxin-2-binding protein 1| Length = 396 Score = 60.1 bits (144), Expect = 5e-09 Identities = 40/126 (31%), Positives = 65/126 (51%), Gaps = 4/126 (3%) Frame = +3 Query: 171 EEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSF----RAYVGNLPWQAED 338 + AD + +T +SG + AA + + P + S R +V N+P++ D Sbjct: 75 QSADTSAQT-----VSGTATQTDDAAPTDGQPQTQPSENTESKSQPKRLHVSNIPFRFRD 129 Query: 339 SRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRV 518 L QMF + G++++ I+++ E G S+GFGFVT + D D A L G ++GR + V Sbjct: 130 PDLRQMFGQFGKILDVEIIFN-ERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 187 Query: 519 NVAAER 536 N A R Sbjct: 188 NNATAR 193 Score = 50.1 bits (118), Expect = 5e-06 Identities = 27/74 (36%), Positives = 39/74 (52%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 N+P+ L Q+F Q G + E+I+N S+GFGFVT +AD+A E + Sbjct: 122 NIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFENSADADRAREKLHGTV 179 Query: 213 ISGRLLNVNRAAQR 254 + GR + VN A R Sbjct: 180 VEGRKIEVNNATAR 193
>HNRPD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 353 Score = 59.7 bits (143), Expect = 7e-09 Identities = 37/142 (26%), Positives = 69/142 (48%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G L +D + L F + G V + + +G+SRGFGFV E DK ++ + Sbjct: 100 GGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ-KEH 158 Query: 210 DISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNAT 389 ++G++++ RA + + + P ++ +VG L + ++ + F GEV + Sbjct: 159 KLNGKVIDPKRA--KAMKTKEPVKKI------FVGGLSPDTPEEKIREYFGGFGEVESIE 210 Query: 390 IVYDRETGRSRGFGFVTMASKE 455 + D +T + RGF F+T +E Sbjct: 211 LPMDNKTNKRRGFCFITFKEEE 232 Score = 52.0 bits (123), Expect = 1e-06 Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 4/97 (4%) Frame = +3 Query: 297 FRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS 476 ++ ++G L W L FS+ G+VV+ T+ D TGRSRGFGFV E +D + Sbjct: 95 WKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMD 154 Query: 477 ----ALDGQEMDGRPLRVNVAAERPQRGF*CGAAAES 575 L+G+ +D + + E ++ F G + ++ Sbjct: 155 QKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDT 191 Score = 32.7 bits (73), Expect = 0.89 Identities = 17/55 (30%), Positives = 27/55 (49%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIE 194 G L D E++ + F G VE E+ + ++ + RGF F+T E K +E Sbjct: 185 GGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 239
>RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HSRNASEB) (ssDNA| binding protein SEB4) (CLL-associated antigen KW-5) Length = 216 Score = 58.9 bits (141), Expect = 1e-08 Identities = 29/76 (38%), Positives = 45/76 (59%) Frame = +3 Query: 300 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 479 + +VG LP+ D+ L + F G++ A ++ DR+TG+SRG+GFVTMA + + A Sbjct: 12 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71 Query: 480 LDGQEMDGRPLRVNVA 527 +DGR VN+A Sbjct: 72 -PNPIIDGRKANVNLA 86 Score = 53.5 bits (127), Expect = 5e-07 Identities = 31/72 (43%), Positives = 43/72 (59%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G LPY L + F+ G +E A VI +R++G+SRG+GFVTM+ A++A + N Sbjct: 16 GGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPI 75 Query: 210 DISGRLLNVNRA 245 I GR NVN A Sbjct: 76 -IDGRKANVNLA 86
>HNRPG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 58.9 bits (141), Expect = 1e-08 Identities = 25/78 (32%), Positives = 46/78 (58%) Frame = +3 Query: 300 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 479 + ++G L + + L +F ++G +V ++ DRET +SRGF FVT+ S D A Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTLESPADAKDAARD 68 Query: 480 LDGQEMDGRPLRVNVAAE 533 ++G+ +DG+ ++V A + Sbjct: 69 MNGKSLDGKAIKVEQATK 86 Score = 40.8 bits (94), Expect = 0.003 Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 4/87 (4%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G L + + + L +F + G + ++ +RE+ +SRGF FVT+ + +A A N Sbjct: 13 GGLNTETNEKALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTLESPADAKDAARDMNGK 72 Query: 210 DISGRLLNVNRAA----QRGSRVERPP 278 + G+ + V +A + G R PP Sbjct: 73 SLDGKAIKVEQATKPFFESGRRGPPPP 99
>A2BP1_HUMAN (Q9NWB1) Ataxin-2-binding protein 1| Length = 397 Score = 58.9 bits (141), Expect = 1e-08 Identities = 41/131 (31%), Positives = 66/131 (50%), Gaps = 4/131 (3%) Frame = +3 Query: 156 TMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSF----RAYVGNLP 323 T S AD + +T +SG + AA + + P + + R +V N+P Sbjct: 71 THSEQSPADTSAQT-----VSGTATQADDAAPTDGQPQTQPSENTENKSQPKRLHVSNIP 125 Query: 324 WQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDG 503 ++ D L QMF + G++++ I+++ E G S+GFGFVT + D D A L G ++G Sbjct: 126 FRFRDPDLRQMFGQFGKILDVEIIFN-ERG-SKGFGFVTFENSADADRAREKLHGTVVEG 183 Query: 504 RPLRVNVAAER 536 R + VN A R Sbjct: 184 RKIEVNNATAR 194 Score = 50.1 bits (118), Expect = 5e-06 Identities = 27/74 (36%), Positives = 39/74 (52%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 N+P+ L Q+F Q G + E+I+N S+GFGFVT +AD+A E + Sbjct: 123 NIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFENSADADRAREKLHGTV 180 Query: 213 ISGRLLNVNRAAQR 254 + GR + VN A R Sbjct: 181 VEGRKIEVNNATAR 194
>TRA2A_MOUSE (Q6PFR5) Transformer-2 protein homolog (TRA-2 alpha)| Length = 281 Score = 58.5 bits (140), Expect = 2e-08 Identities = 38/117 (32%), Positives = 52/117 (44%), Gaps = 4/117 (3%) Frame = +3 Query: 237 NRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGR 416 NR GSR P F L + L ++FS +G + +VYD+ TGR Sbjct: 102 NRRRHTGSRANPDPNTCLGVF-----GLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGR 156 Query: 417 SRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVA----AERPQRGF*CGAAAES 575 SRGF FV +D A+ +G E+DGR +RV+ + A P G G S Sbjct: 157 SRGFAFVYFERIDDSKEAMERANGMELDGRRIRVDYSITKRAHTPTPGIYMGRPTHS 213 Score = 45.8 bits (107), Expect = 1e-04 Identities = 20/71 (28%), Positives = 41/71 (57%) Frame = +3 Query: 63 LAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYDISGRLLNVNR 242 L ++F + G + V+Y++ +G+SRGF FV I+++ +A+E N ++ GR + V+ Sbjct: 133 LREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVDY 192 Query: 243 AAQRGSRVERP 275 + + + P Sbjct: 193 SITKRAHTPTP 203
>TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha)| Length = 282 Score = 58.5 bits (140), Expect = 2e-08 Identities = 38/117 (32%), Positives = 52/117 (44%), Gaps = 4/117 (3%) Frame = +3 Query: 237 NRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGR 416 NR GSR P F L + L ++FS +G + +VYD+ TGR Sbjct: 104 NRRRHTGSRANPDPNTCLGVF-----GLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGR 158 Query: 417 SRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVA----AERPQRGF*CGAAAES 575 SRGF FV +D A+ +G E+DGR +RV+ + A P G G S Sbjct: 159 SRGFAFVYFERIDDSKEAMERANGMELDGRRIRVDYSITKRAHTPTPGIYMGRPTHS 215 Score = 45.8 bits (107), Expect = 1e-04 Identities = 20/71 (28%), Positives = 41/71 (57%) Frame = +3 Query: 63 LAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYDISGRLLNVNR 242 L ++F + G + V+Y++ +G+SRGF FV I+++ +A+E N ++ GR + V+ Sbjct: 135 LREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVDY 194 Query: 243 AAQRGSRVERP 275 + + + P Sbjct: 195 SITKRAHTPTP 205
>RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 430 Score = 58.5 bits (140), Expect = 2e-08 Identities = 45/180 (25%), Positives = 79/180 (43%), Gaps = 17/180 (9%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVE-----------------VAEVIYNRESGQSRGFGFVT 158 GNLP + ++L F + G +E +A + Q +V Sbjct: 190 GNLPVTCNKKKLKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIKRKIHPDQKNINAYVV 249 Query: 159 MSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAED 338 A +A++ G + V+ A++ SR +R +VGNLP++ E+ Sbjct: 250 FKEESAATQALKRNGAQIADGFRIRVDLASETSSRDKRS---------VFVGNLPYKVEE 300 Query: 339 SRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRV 518 S + + F + G ++ IV D+ TG +GFG+V + + + A+ L+ E+ GR LRV Sbjct: 301 SAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALK-LNNSELMGRKLRV 359
>HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) (Glycoprotein p43) Length = 391 Score = 58.5 bits (140), Expect = 2e-08 Identities = 25/78 (32%), Positives = 45/78 (57%) Frame = +3 Query: 300 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 479 + ++G L + + L +F ++G +V ++ DRET +SRGF FVT S D A Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68 Query: 480 LDGQEMDGRPLRVNVAAE 533 ++G+ +DG+ ++V A + Sbjct: 69 MNGKSLDGKAIKVEQATK 86 Score = 40.4 bits (93), Expect = 0.004 Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 4/87 (4%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G L + + + L +F + G + ++ +RE+ +SRGF FVT + +A A N Sbjct: 13 GGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGK 72 Query: 210 DISGRLLNVNRAA----QRGSRVERPP 278 + G+ + V +A + G R PP Sbjct: 73 SLDGKAIKVEQATKPSFESGRRGPPPP 99
>RBMX2_MOUSE (Q8R0F5) RNA-binding motif protein, X-linked 2| Length = 326 Score = 58.2 bits (139), Expect = 2e-08 Identities = 25/80 (31%), Positives = 50/80 (62%) Frame = +3 Query: 282 QFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDL 461 ++ S +VG LP++ + ++ +FS++GE+VN +V D++TG+S+GF F+ + Sbjct: 31 EYKHSAWIFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRST 90 Query: 462 DSAISALDGQEMDGRPLRVN 521 A+ +G ++ GR +RV+ Sbjct: 91 VLAVDNFNGIKIKGRTIRVD 110 Score = 42.0 bits (97), Expect = 0.001 Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 5/90 (5%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G LPY++ + +F Q G + ++ ++++G+S+GF F+ A++ FN Sbjct: 41 GGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNFNGI 100 Query: 210 DISGRLLNVN-----RAAQRGSRVERPPRQ 284 I GR + V+ RA Q V+ R+ Sbjct: 101 KIKGRTIRVDHVSNYRAPQESEDVDDVTRE 130
>RBMS1_MOUSE (Q91W59) RNA-binding motif, single-stranded-interacting protein 1| (Single-stranded DNA-binding protein MSSP-1) Length = 403 Score = 57.8 bits (138), Expect = 3e-08 Identities = 37/152 (24%), Positives = 66/152 (43%) Frame = +3 Query: 36 LPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYDI 215 LP + + L +L G + + I ++ + + +G+GFV + A KA+ + Sbjct: 69 LPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKAVSALKANGV 128 Query: 216 SGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIV 395 AQ + E+ P Y+ NLP ++ L M G+V++ ++ Sbjct: 129 Q---------AQMAKQQEQDPTNL------YISNLPLSMDEQELENMLKPFGQVISTRVL 173 Query: 396 YDRETGRSRGFGFVTMASKEDLDSAISALDGQ 491 D +G SRG GF M S E ++ I +G+ Sbjct: 174 RD-SSGASRGVGFARMESTEKCEAVIGHFNGK 204 Score = 42.7 bits (99), Expect = 9e-04 Identities = 20/64 (31%), Positives = 33/64 (51%) Frame = +3 Query: 291 SSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSA 470 S Y+ LP D LV++ +G++V+ + D+ T + +G+GFV S A Sbjct: 60 SKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKA 119 Query: 471 ISAL 482 +SAL Sbjct: 120 VSAL 123
>PUF68_DROME (Q8T6B9) Poly U-binding splicing factor half pint (68 kDa poly| U-binding splicing factor) (Protein half pint) (PUF60 homolog) Length = 637 Score = 57.8 bits (138), Expect = 3e-08 Identities = 38/173 (21%), Positives = 83/173 (47%), Gaps = 3/173 (1%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G++ +++ + + F G ++ + ++ + + +GF FV E A A+E N Sbjct: 135 GSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQMNGA 194 Query: 210 DISGRLLNVNRAAQ--RGSRVERPPRQFASSF-RAYVGNLPWQAEDSRLVQMFSEHGEVV 380 + GR + V R + + +V ++ A SF R YV ++ + + +F G ++ Sbjct: 195 LMGGRNIKVGRPSNMPQAQQVIDEVQEEAKSFNRIYVASIHPDLSEEDIKSVFEAFGPIL 254 Query: 381 NATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERP 539 + +G+GF+ A+K+ +D AI++++ ++ G+ LRV + P Sbjct: 255 YCKLAQGTSLHTHKGYGFIEYANKQAMDEAIASMNLFDLGGQLLRVGRSITPP 307
>RBM34_RAT (Q5M9F1) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 428 Score = 57.8 bits (138), Expect = 3e-08 Identities = 48/180 (26%), Positives = 78/180 (43%), Gaps = 17/180 (9%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVE-----------------VAEVIYNRESGQSRGFGFVT 158 GNLP + ++L F + G VE +A + Q +V Sbjct: 188 GNLPVTCNKKKLKSFFKEYGQVESVRFRSVMPAEGTLSKKLAAIKRKFHPDQKSINAYVV 247 Query: 159 MSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAED 338 A KA++ G + V+ A++ SR +R +VGNLP++ ++ Sbjct: 248 FKEERAAAKALQRNGAQIAEGFRIRVDLASETASRDKRS---------VFVGNLPYRVDE 298 Query: 339 SRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRV 518 S L + F + G +V IV + TG RGFG+V + + + A+ L+ E+ GR LRV Sbjct: 299 SALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLALK-LNNSELMGRKLRV 357
>CSX1_SCHPO (O13759) RNA-binding post-transcriptional regulator csx1| Length = 632 Score = 57.8 bits (138), Expect = 3e-08 Identities = 51/178 (28%), Positives = 84/178 (47%), Gaps = 9/178 (5%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSR--GFGFVTMSTIEEADKAIETFN 203 G+L +D+ + QL+ +V+ ++ S + FV S+ A++A+ +N Sbjct: 90 GDLEPWMDATFIQQLWASLNEPVNVKVMRSKASSSETLISYCFVQFSSSAAAERALMKYN 149 Query: 204 RYDISGR--LLNVNRAA----QRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMF-S 362 I G +N A Q + V R P F +VG+L EDS L F S Sbjct: 150 NTMIPGAHCTFKLNWATGGGIQHNNFVSRDPE-----FSIFVGDLLPTTEDSDLFMTFRS 204 Query: 363 EHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAER 536 + +A I+ D TG SR +GFV +S+++ A+ + G GRPLR++VA+ + Sbjct: 205 IYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVASPK 262
>RBM9_HUMAN (O43251) RNA-binding protein 9 (RNA-binding motif protein 9)| (Hexaribonucleotide-binding protein 2) (Repressor of tamoxifen transcriptional activity) Length = 390 Score = 57.8 bits (138), Expect = 3e-08 Identities = 31/79 (39%), Positives = 48/79 (60%) Frame = +3 Query: 300 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 479 R +V N+P++ D L QMF + G++++ I+++ E G S+GFGFVT + D D A Sbjct: 122 RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN-ERG-SKGFGFVTFENSADADRAREK 179 Query: 480 LDGQEMDGRPLRVNVAAER 536 L G ++GR + VN A R Sbjct: 180 LHGTVVEGRKIEVNNATAR 198 Score = 50.1 bits (118), Expect = 5e-06 Identities = 27/74 (36%), Positives = 39/74 (52%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 N+P+ L Q+F Q G + E+I+N S+GFGFVT +AD+A E + Sbjct: 127 NIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFENSADADRAREKLHGTV 184 Query: 213 ISGRLLNVNRAAQR 254 + GR + VN A R Sbjct: 185 VEGRKIEVNNATAR 198
>RBMS1_HUMAN (P29558) RNA-binding motif, single-stranded-interacting protein 1| (Single-stranded DNA-binding protein MSSP-1) (Suppressor of CDC2 with RNA-binding motif 2) Length = 406 Score = 57.4 bits (137), Expect = 3e-08 Identities = 38/152 (25%), Positives = 65/152 (42%) Frame = +3 Query: 36 LPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYDI 215 LP + L +L G + + I ++ + + +G+GFV + A KA+ + Sbjct: 69 LPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSALKASGV 128 Query: 216 SGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIV 395 AQ + E+ P Y+ NLP ++ L M G+V++ I+ Sbjct: 129 Q---------AQMAKQQEQDPTNL------YISNLPLSMDEQELENMLKPFGQVISTRIL 173 Query: 396 YDRETGRSRGFGFVTMASKEDLDSAISALDGQ 491 D +G SRG GF M S E ++ I +G+ Sbjct: 174 RD-SSGTSRGVGFARMESTEKCEAVIGHFNGK 204 Score = 42.7 bits (99), Expect = 9e-04 Identities = 20/64 (31%), Positives = 33/64 (51%) Frame = +3 Query: 291 SSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSA 470 S Y+ LP D LV++ +G++V+ + D+ T + +G+GFV S A Sbjct: 60 SKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKA 119 Query: 471 ISAL 482 +SAL Sbjct: 120 VSAL 123
>RBMX2_HUMAN (Q9Y388) RNA-binding motif protein, X-linked 2| Length = 322 Score = 57.4 bits (137), Expect = 3e-08 Identities = 24/80 (30%), Positives = 50/80 (62%) Frame = +3 Query: 282 QFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDL 461 ++ S ++G LP++ + ++ +FS++GE+VN +V D++TG+S+GF F+ + Sbjct: 31 EYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRST 90 Query: 462 DSAISALDGQEMDGRPLRVN 521 A+ +G ++ GR +RV+ Sbjct: 91 ILAVDNFNGIKIKGRTIRVD 110 Score = 41.2 bits (95), Expect = 0.003 Identities = 19/73 (26%), Positives = 38/73 (52%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G LPY++ + +F Q G + ++ ++++G+S+GF F+ A++ FN Sbjct: 41 GGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFNGI 100 Query: 210 DISGRLLNVNRAA 248 I GR + V+ + Sbjct: 101 KIKGRTIRVDHVS 113
>HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 56.6 bits (135), Expect = 6e-08 Identities = 24/78 (30%), Positives = 44/78 (56%) Frame = +3 Query: 300 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 479 + ++G L + + L +F ++G +V ++ DRET +SRGF FVT S D Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARD 68 Query: 480 LDGQEMDGRPLRVNVAAE 533 ++G+ +DG+ ++V A + Sbjct: 69 MNGKSLDGKAIKVEQATK 86 Score = 38.5 bits (88), Expect = 0.016 Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 4/87 (4%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G L + + + L +F + G + ++ +RE+ +SRGF FVT + +A N Sbjct: 13 GGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARDMNGK 72 Query: 210 DISGRLLNVNRAA----QRGSRVERPP 278 + G+ + V +A + G R PP Sbjct: 73 SLDGKAIKVEQATKPSFESGRRGPPPP 99
>SCE3_SCHPO (O14369) Probable RNA-binding protein sce3| Length = 388 Score = 56.2 bits (134), Expect = 8e-08 Identities = 34/85 (40%), Positives = 51/85 (60%) Frame = +3 Query: 297 FRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS 476 F A+VGNL + ++ L F E V + +V D T RSRGFG+V + + L +A+ Sbjct: 94 FTAHVGNLSFDLTENDLGDFFGEG--VTSIRLVIDPLTERSRGFGYVEFETADTLSAAL- 150 Query: 477 ALDGQEMDGRPLRVNVAAERPQRGF 551 AL G+++ GRP+R+ VA P+R F Sbjct: 151 ALSGEDLMGRPVRITVA--EPRRSF 173 Score = 33.1 bits (74), Expect = 0.68 Identities = 24/77 (31%), Positives = 38/77 (49%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 GNL +D+ L F + GV + VI + + +SRGFG+V T + A+ + Sbjct: 99 GNLSFDLTENDLGDFFGE-GVTSIRLVI-DPLTERSRGFGYVEFETADTLSAAL-ALSGE 155 Query: 210 DISGRLLNVNRAAQRGS 260 D+ GR + + A R S Sbjct: 156 DLMGRPVRITVAEPRRS 172
>SART3_PONPY (Q5REG1) Squamous cell carcinoma antigen recognized by T-cells 3| (SART-3) Length = 981 Score = 55.8 bits (133), Expect = 1e-07 Identities = 42/177 (23%), Positives = 84/177 (47%), Gaps = 6/177 (3%) Frame = +3 Query: 33 NLPYDVDSE--RLAQLFDQAG-VVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFN 203 NLPY + +L LF+ G VV++ + NR G RG+ +V + A +A+E + Sbjct: 728 NLPYSMQEPDAKLRPLFEACGEVVQIRPIFSNR--GDFRGYRYVEFKEEKSALQALE-MD 784 Query: 204 RYDISGRLLNVNRAAQRGSRVERPPRQFASSF---RAYVGNLPWQAEDSRLVQMFSEHGE 374 R + GR + V+ + + ++++S + ++ LP+ L ++ HG Sbjct: 785 RKSVEGRPMFVSPCVDKSKNPDFKVFRYSTSLEKHKLFISGLPFSCTKEELEEICKAHGT 844 Query: 375 VVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 545 V + +V +R G+ +G +V ++ A+ +DG + ++V + + PQR Sbjct: 845 VKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENVIKVAI-SNPPQR 899
>MRD1_YARLI (Q6CEW9) Multiple RNA-binding domain-containing protein 1| Length = 828 Score = 55.8 bits (133), Expect = 1e-07 Identities = 46/170 (27%), Positives = 75/170 (44%), Gaps = 5/170 (2%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQ-----SRGFGFVTMSTIEEADKAIET 197 NL + S L F VA+V +S S GFGFV S+ E A+ A + Sbjct: 611 NLNFKTTSRVLTDAFKALDGFLVAQVKMKPDSKNKGKFLSMGFGFVEFSSKEAAEIAQKA 670 Query: 198 FNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEV 377 + + + G L + + + RG E + A + + NLP++A + ++F G + Sbjct: 671 MDGHVLDGHKLQL-KISNRGQDEETTETKKAIDSKILIKNLPFEATKKDVQKLFGAFGSL 729 Query: 378 VNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVA 527 + + SRGF F S ++ + A+SAL G + GR L + A Sbjct: 730 KTVRVP-KKFNSESRGFAFAEYVSAKEAEHAMSALQGTHLLGRRLVLQYA 778 Score = 44.3 bits (103), Expect = 3e-04 Identities = 22/73 (30%), Positives = 40/73 (54%) Frame = +3 Query: 300 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 479 R ++ NL + A++ Q+FS++GE+ + + +TG+ +GF V E+ +A A Sbjct: 302 RLFLRNLLYTAKEEDFRQLFSQYGELEEVHLPINTKTGQCKGFAHVQFEDPENAIAAYEA 361 Query: 480 LDGQEMDGRPLRV 518 DG+ GR L + Sbjct: 362 QDGKIFQGRLLHI 374 Score = 40.4 bits (93), Expect = 0.004 Identities = 24/68 (35%), Positives = 32/68 (47%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 NL Y E QLF Q G +E + N ++GQ +GF V E A A E + Sbjct: 307 NLLYTAKEEDFRQLFSQYGELEEVHLPINTKTGQCKGFAHVQFEDPENAIAAYEAQDGKI 366 Query: 213 ISGRLLNV 236 GRLL++ Sbjct: 367 FQGRLLHI 374 Score = 38.9 bits (89), Expect = 0.012 Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 5/105 (4%) Frame = +3 Query: 228 LNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRE 407 L+ + GS ERP +S +V NL ++ L F + A + + Sbjct: 585 LSASDVMDTGSNDERPA---TASTSVFVKNLNFKTTSRVLTDAFKALDGFLVAQVKMKPD 641 Query: 408 TGR-----SRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVA 527 + S GFGFV +SKE + A A+DG +DG L++ ++ Sbjct: 642 SKNKGKFLSMGFGFVEFSSKEAAEIAQKAMDGHVLDGHKLQLKIS 686 Score = 33.9 bits (76), Expect = 0.40 Identities = 21/79 (26%), Positives = 37/79 (46%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 NLP++ + + +LF G ++ V + + +SRGF F + +EA+ A+ Sbjct: 709 NLPFEATKKDVQKLFGAFGSLKTVRVP-KKFNSESRGFAFAEYVSAKEAEHAMSALQGTH 767 Query: 213 ISGRLLNVNRAAQRGSRVE 269 + GR L + A S E Sbjct: 768 LLGRRLVLQYAQADASNAE 786
>ELAV_DROVI (P23241) Protein elav (Embryonic lethal abnormal visual protein)| Length = 519 Score = 55.5 bits (132), Expect = 1e-07 Identities = 38/165 (23%), Positives = 70/165 (42%), Gaps = 14/165 (8%) Frame = +3 Query: 36 LPYDVDSERLAQLFDQAGVVEVAEVIYNRES-------------GQSRGFGFVTMSTIEE 176 LP + + + LF G +E ++I ++ GQS G+GFV ++ Sbjct: 192 LPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVNYVRPQD 251 Query: 177 ADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQM 356 A++A+ N + + + V+ A RP YV LP L + Sbjct: 252 AEQAVNVLNGLRLQNKTIKVSFA--------RPSSDAIKGANLYVSGLPKTMTQQELEAI 303 Query: 357 FSEHGEVVNATIVYDR-ETGRSRGFGFVTMASKEDLDSAISALDG 488 F+ G ++ + I+ + +++G GF+ +E+ AI AL+G Sbjct: 304 FAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAIIALNG 348 Score = 50.8 bits (120), Expect = 3e-06 Identities = 26/76 (34%), Positives = 45/76 (59%) Frame = +3 Query: 294 SFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAI 473 ++ ++ NL + E++ L Q+F G V + IV D T + +G+GFV+M + ++ AI Sbjct: 437 AYPIFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAI 496 Query: 474 SALDGQEMDGRPLRVN 521 AL+G M R L+V+ Sbjct: 497 RALNGYTMGNRVLQVS 512 Score = 48.1 bits (113), Expect = 2e-05 Identities = 23/69 (33%), Positives = 39/69 (56%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 NL + + L QLF G V+ +++ + + Q +G+GFV+M+ +EA AI N Y Sbjct: 444 NLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRALNGYT 503 Query: 213 ISGRLLNVN 239 + R+L V+ Sbjct: 504 MGNRVLQVS 512 Score = 38.5 bits (88), Expect = 0.016 Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 13/86 (15%) Frame = +3 Query: 309 VGNLPWQAEDSRLVQMFSEHGEVVNATIVYDR-------------ETGRSRGFGFVTMAS 449 V LP + + +FS GE+ + ++ D+ G+S G+GFV Sbjct: 189 VNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVNYVR 248 Query: 450 KEDLDSAISALDGQEMDGRPLRVNVA 527 +D + A++ L+G + + ++V+ A Sbjct: 249 PQDAEQAVNVLNGLRLQNKTIKVSFA 274
>ELAV_DROME (P16914) Protein elav (Embryonic lethal abnormal visual protein)| Length = 483 Score = 55.5 bits (132), Expect = 1e-07 Identities = 38/165 (23%), Positives = 70/165 (42%), Gaps = 14/165 (8%) Frame = +3 Query: 36 LPYDVDSERLAQLFDQAGVVEVAEVIYNRES-------------GQSRGFGFVTMSTIEE 176 LP + + + LF G +E ++I ++ GQS G+GFV ++ Sbjct: 156 LPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVNYVRPQD 215 Query: 177 ADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQM 356 A++A+ N + + + V+ A RP YV LP L + Sbjct: 216 AEQAVNVLNGLRLQNKTIKVSFA--------RPSSDAIKGANLYVSGLPKTMTQQELEAI 267 Query: 357 FSEHGEVVNATIVYDR-ETGRSRGFGFVTMASKEDLDSAISALDG 488 F+ G ++ + I+ + +++G GF+ +E+ AI AL+G Sbjct: 268 FAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAIIALNG 312 Score = 50.8 bits (120), Expect = 3e-06 Identities = 26/76 (34%), Positives = 45/76 (59%) Frame = +3 Query: 294 SFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAI 473 ++ ++ NL + E++ L Q+F G V + IV D T + +G+GFV+M + ++ AI Sbjct: 401 AYPIFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAI 460 Query: 474 SALDGQEMDGRPLRVN 521 AL+G M R L+V+ Sbjct: 461 RALNGYTMGNRVLQVS 476 Score = 48.1 bits (113), Expect = 2e-05 Identities = 23/69 (33%), Positives = 39/69 (56%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 NL + + L QLF G V+ +++ + + Q +G+GFV+M+ +EA AI N Y Sbjct: 408 NLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRALNGYT 467 Query: 213 ISGRLLNVN 239 + R+L V+ Sbjct: 468 MGNRVLQVS 476 Score = 38.9 bits (89), Expect = 0.012 Identities = 25/112 (22%), Positives = 46/112 (41%), Gaps = 13/112 (11%) Frame = +3 Query: 231 NVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDR-- 404 N +Q GS R V LP + + +FS GE+ + ++ D+ Sbjct: 132 NAGSGSQNGSNGSTETRT-----NLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQ 186 Query: 405 -----------ETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVA 527 G+S G+GFV +D + A++ L+G + + ++V+ A Sbjct: 187 VYIDPLNPQAPSKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFA 238
>FOX1_CAEEL (Q10572) Sex determination protein fox-1 (Feminizing locus on X| protein 1) Length = 415 Score = 55.1 bits (131), Expect = 2e-07 Identities = 31/79 (39%), Positives = 46/79 (58%) Frame = +3 Query: 300 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 479 R +V N+P++ D L MF + G V + I+++ E G S+GFGFVTM +D + A Sbjct: 154 RLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFN-ERG-SKGFGFVTMERPQDAERARQE 211 Query: 480 LDGQEMDGRPLRVNVAAER 536 L G ++GR + VN A R Sbjct: 212 LHGSMIEGRKIEVNCATAR 230 Score = 53.5 bits (127), Expect = 5e-07 Identities = 43/167 (25%), Positives = 72/167 (43%), Gaps = 1/167 (0%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 N+P+ L +F++ GVV E+I+N S+GFGFVTM ++A++A + + Sbjct: 159 NIPFRFRDPDLKTMFEKFGVVSDVEIIFNERG--SKGFGFVTMERPQDAERARQELHGSM 216 Query: 213 ISGRLLNVNRAAQR-GSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNAT 389 I GR + VN A R S+ +P P A+ + Q ++ + Sbjct: 217 IEGRKIEVNCATARVHSKKVKPTGGILDQMN------PLMAQSALAAQAQMNRALLLRSP 270 Query: 390 IVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAA 530 +V GR L +A++ ++ G+PL N AA Sbjct: 271 LVAQSLLGRGAALIPGMQQPAFQLQAALAGNPLAQLQGQPLLFNAAA 317
>HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) (pp68) Length = 623 Score = 55.1 bits (131), Expect = 2e-07 Identities = 34/136 (25%), Positives = 70/136 (51%), Gaps = 1/136 (0%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G +P D+ + L LF++AG + ++ + +G +RG+ FVT T E A +A++ +N + Sbjct: 167 GKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNH 226 Query: 210 DI-SGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNA 386 +I SG+ + V + ++ R +VG++P ++++ FS+ E + Sbjct: 227 EIRSGKHIGVCIS--------------VANNRLFVGSIPKSKTKEQILEEFSKVTEGLTD 272 Query: 387 TIVYDRETGRSRGFGF 434 I+Y + + + GF Sbjct: 273 VILYHQPDDKKKNRGF 288 Score = 42.0 bits (97), Expect = 0.001 Identities = 19/64 (29%), Positives = 34/64 (53%) Frame = +3 Query: 306 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 485 +VG +P + LV +F + G + + ++ D TG +RG+ FVT +KE A+ + Sbjct: 165 FVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYN 224 Query: 486 GQEM 497 E+ Sbjct: 225 NHEI 228
>HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) Length = 623 Score = 55.1 bits (131), Expect = 2e-07 Identities = 34/136 (25%), Positives = 70/136 (51%), Gaps = 1/136 (0%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G +P D+ + L LF++AG + ++ + +G +RG+ FVT T E A +A++ +N + Sbjct: 167 GKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNH 226 Query: 210 DI-SGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNA 386 +I SG+ + V + ++ R +VG++P ++++ FS+ E + Sbjct: 227 EIRSGKHIGVCIS--------------VANNRLFVGSIPKSKTKEQILEEFSKVTEGLTD 272 Query: 387 TIVYDRETGRSRGFGF 434 I+Y + + + GF Sbjct: 273 VILYHQPDDKKKNRGF 288 Score = 42.0 bits (97), Expect = 0.001 Identities = 19/64 (29%), Positives = 34/64 (53%) Frame = +3 Query: 306 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 485 +VG +P + LV +F + G + + ++ D TG +RG+ FVT +KE A+ + Sbjct: 165 FVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYN 224 Query: 486 GQEM 497 E+ Sbjct: 225 NHEI 228
>NONO_PONPY (Q5RFL9) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 471 Score = 55.1 bits (131), Expect = 2e-07 Identities = 46/159 (28%), Positives = 71/159 (44%) Frame = +3 Query: 9 RRPRCTSGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKA 188 +R R GNLP D+ E + +LF++ G + EV +++ +GFGF+ + T A+ A Sbjct: 72 QRSRLFVGNLPPDITEEEMRKLFEKYG--KAGEVFIHKD----KGFGFIRLETRTLAEIA 125 Query: 189 IETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEH 368 + + G+ L V A S R NLP + L + FS Sbjct: 126 KVELDNMPLRGKQLRVRFACHSASLTVR--------------NLPQYVSNELLEEAFSVF 171 Query: 369 GEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 485 G+V A ++ D + GR G G V + K +A ALD Sbjct: 172 GQVERAVVIVD-DRGRPSGKGIVEFSGK---PAARKALD 206 Score = 39.7 bits (91), Expect = 0.007 Identities = 23/83 (27%), Positives = 40/83 (48%) Frame = +3 Query: 279 RQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKED 458 + F R +VGNLP + + ++F ++G+ I D+ GFGF+ + ++ Sbjct: 68 KTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDK------GFGFIRLETRTL 121 Query: 459 LDSAISALDGQEMDGRPLRVNVA 527 + A LD + G+ LRV A Sbjct: 122 AEIAKVELDNMPLRGKQLRVRFA 144
>NONO_HUMAN (Q15233) Non-POU domain-containing octamer-binding protein (NonO| protein) (54 kDa nuclear RNA- and DNA-binding protein) (p54(nrb)) (p54nrb) (55 kDa nuclear protein) (NMT55) (DNA-binding p52/p100 complex, 52 kDa subunit) Length = 471 Score = 55.1 bits (131), Expect = 2e-07 Identities = 46/159 (28%), Positives = 71/159 (44%) Frame = +3 Query: 9 RRPRCTSGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKA 188 +R R GNLP D+ E + +LF++ G + EV +++ +GFGF+ + T A+ A Sbjct: 72 QRSRLFVGNLPPDITEEEMRKLFEKYG--KAGEVFIHKD----KGFGFIRLETRTLAEIA 125 Query: 189 IETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEH 368 + + G+ L V A S R NLP + L + FS Sbjct: 126 KVELDNMPLRGKQLRVRFACHSASLTVR--------------NLPQYVSNELLEEAFSVF 171 Query: 369 GEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 485 G+V A ++ D + GR G G V + K +A ALD Sbjct: 172 GQVERAVVIVD-DRGRPSGKGIVEFSGK---PAARKALD 206 Score = 39.7 bits (91), Expect = 0.007 Identities = 23/83 (27%), Positives = 40/83 (48%) Frame = +3 Query: 279 RQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKED 458 + F R +VGNLP + + ++F ++G+ I D+ GFGF+ + ++ Sbjct: 68 KTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDK------GFGFIRLETRTL 121 Query: 459 LDSAISALDGQEMDGRPLRVNVA 527 + A LD + G+ LRV A Sbjct: 122 AEIAKVELDNMPLRGKQLRVRFA 144
>HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Liver regeneration-related protein LRRG077) Length = 533 Score = 55.1 bits (131), Expect = 2e-07 Identities = 34/136 (25%), Positives = 70/136 (51%), Gaps = 1/136 (0%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G +P D+ + L LF++AG + ++ + +G +RG+ FVT T E A +A++ +N + Sbjct: 77 GKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNH 136 Query: 210 DI-SGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNA 386 +I SG+ + V + ++ R +VG++P ++++ FS+ E + Sbjct: 137 EIRSGKHIGVCIS--------------VANNRLFVGSIPKSKTKEQILEEFSKVTEGLTD 182 Query: 387 TIVYDRETGRSRGFGF 434 I+Y + + + GF Sbjct: 183 VILYHQPDDKKKNRGF 198 Score = 42.0 bits (97), Expect = 0.001 Identities = 19/64 (29%), Positives = 34/64 (53%) Frame = +3 Query: 306 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 485 +VG +P + LV +F + G + + ++ D TG +RG+ FVT +KE A+ + Sbjct: 75 FVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYN 134 Query: 486 GQEM 497 E+ Sbjct: 135 NHEI 138
>NONO_MOUSE (Q99K48) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 473 Score = 55.1 bits (131), Expect = 2e-07 Identities = 46/159 (28%), Positives = 71/159 (44%) Frame = +3 Query: 9 RRPRCTSGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKA 188 +R R GNLP D+ E + +LF++ G + EV +++ +GFGF+ + T A+ A Sbjct: 74 QRSRLFVGNLPPDITEEEMRKLFEKYG--KAGEVFIHKD----KGFGFIRLETRTLAEIA 127 Query: 189 IETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEH 368 + + G+ L V A S R NLP + L + FS Sbjct: 128 KVELDNMPLRGKQLRVRFACHSASLTVR--------------NLPQYVSNELLEEAFSVF 173 Query: 369 GEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 485 G+V A ++ D + GR G G V + K +A ALD Sbjct: 174 GQVERAVVIVD-DRGRPSGKGIVEFSGK---PAARKALD 208 Score = 39.7 bits (91), Expect = 0.007 Identities = 23/83 (27%), Positives = 40/83 (48%) Frame = +3 Query: 279 RQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKED 458 + F R +VGNLP + + ++F ++G+ I D+ GFGF+ + ++ Sbjct: 70 KTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDK------GFGFIRLETRTL 123 Query: 459 LDSAISALDGQEMDGRPLRVNVA 527 + A LD + G+ LRV A Sbjct: 124 AEIAKVELDNMPLRGKQLRVRFA 146
>SART3_HUMAN (Q15020) Squamous cell carcinoma antigen recognized by T-cells 3| (SART-3) (hSART-3) (Tat-interacting protein of 110 kDa) (Tip110) Length = 963 Score = 55.1 bits (131), Expect = 2e-07 Identities = 42/177 (23%), Positives = 84/177 (47%), Gaps = 6/177 (3%) Frame = +3 Query: 33 NLPYDVDSE--RLAQLFDQAG-VVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFN 203 NLPY + +L LF+ G VV++ + NR G RG+ +V + A +A+E + Sbjct: 710 NLPYSMQEPDTKLRPLFEACGEVVQIRPIFSNR--GDFRGYCYVEFKEEKSALQALE-MD 766 Query: 204 RYDISGRLLNVNRAAQRGSRVERPPRQFASSF---RAYVGNLPWQAEDSRLVQMFSEHGE 374 R + GR + V+ + + ++++S + ++ LP+ L ++ HG Sbjct: 767 RKSVEGRPMFVSPCVDKSKNPDFKVFRYSTSLEKHKLFISGLPFSCTKEELEEICKAHGT 826 Query: 375 VVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 545 V + +V +R G+ +G +V ++ A+ +DG + ++V + + PQR Sbjct: 827 VKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI-SNPPQR 881
>NONO_RAT (Q5FVM4) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 476 Score = 55.1 bits (131), Expect = 2e-07 Identities = 46/159 (28%), Positives = 71/159 (44%) Frame = +3 Query: 9 RRPRCTSGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKA 188 +R R GNLP D+ E + +LF++ G + EV +++ +GFGF+ + T A+ A Sbjct: 77 QRSRLFVGNLPPDITEEEMRKLFEKYG--KAGEVFIHKD----KGFGFIRLETRTLAEIA 130 Query: 189 IETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEH 368 + + G+ L V A S R NLP + L + FS Sbjct: 131 KVELDNMPLRGKQLRVRFACHSASLTVR--------------NLPQYVSNELLEEAFSVF 176 Query: 369 GEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 485 G+V A ++ D + GR G G V + K +A ALD Sbjct: 177 GQVERAVVIVD-DRGRPSGKGIVEFSGK---PAARKALD 211 Score = 39.7 bits (91), Expect = 0.007 Identities = 23/83 (27%), Positives = 40/83 (48%) Frame = +3 Query: 279 RQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKED 458 + F R +VGNLP + + ++F ++G+ I D+ GFGF+ + ++ Sbjct: 73 KTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDK------GFGFIRLETRTL 126 Query: 459 LDSAISALDGQEMDGRPLRVNVA 527 + A LD + G+ LRV A Sbjct: 127 AEIAKVELDNMPLRGKQLRVRFA 149
>SART3_MOUSE (Q9JLI8) Squamous cell carcinoma antigen recognized by T-cells 3| (SART-3) (mSART-3) (Tumor-rejection antigen SART3) Length = 962 Score = 54.7 bits (130), Expect = 2e-07 Identities = 41/177 (23%), Positives = 84/177 (47%), Gaps = 6/177 (3%) Frame = +3 Query: 33 NLPYDVDSE--RLAQLFDQAG-VVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFN 203 NLPY ++ +L LF+ G VV++ + NR G RG+ +V + A +A+E + Sbjct: 710 NLPYSIEEPEVKLRPLFEVCGEVVQIRPIFSNR--GDFRGYCYVEFGEEKSAQQALE-LD 766 Query: 204 RYDISGRLLNVNRAAQRGSRVERPPRQFASSF---RAYVGNLPWQAEDSRLVQMFSEHGE 374 R + GR + V+ + + +++++ + ++ LP+ L + HG Sbjct: 767 RKIVEGRPMFVSPCVDKSKNPDFKVFRYSTTLEKHKLFISGLPFSCTKEELEDICKAHGT 826 Query: 375 VVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 545 V + +V +R G+ +G +V ++ A+ +DG + ++V + + PQR Sbjct: 827 VKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIRENVIKVAI-SNPPQR 881
>CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcription| termination factor ctf1) Length = 363 Score = 54.7 bits (130), Expect = 2e-07 Identities = 24/80 (30%), Positives = 43/80 (53%) Frame = +3 Query: 306 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 485 +VGN+P+ + ++ ++F++ G V +V D ETG +G+GF E A+ L+ Sbjct: 10 FVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKLN 69 Query: 486 GQEMDGRPLRVNVAAERPQR 545 E+ R +RV + P+R Sbjct: 70 NSELGPRKIRVEFPSNDPRR 89 Score = 50.4 bits (119), Expect = 4e-06 Identities = 20/69 (28%), Positives = 39/69 (56%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 GN+PYDV +++ ++F+Q G V+ +++ + E+G +G+GF E A+ N Sbjct: 12 GNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKLNNS 71 Query: 210 DISGRLLNV 236 ++ R + V Sbjct: 72 ELGPRKIRV 80
>RBMS2_MOUSE (Q8VC70) RNA-binding motif, single-stranded-interacting protein 2| Length = 383 Score = 54.7 bits (130), Expect = 2e-07 Identities = 37/149 (24%), Positives = 65/149 (43%) Frame = +3 Query: 63 LAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYDISGRLLNVNR 242 L +L G + + I ++ + + +G+GFV + A KA+ + Sbjct: 74 LVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSSAQKAVTALKASGVQ-------- 125 Query: 243 AAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSR 422 AQ + E+ P Y+ NLP ++ L M G+V++ I+ D +G SR Sbjct: 126 -AQMAKQQEQDPTNL------YISNLPLSMDEQELEGMLKPFGQVISTRILRD-TSGASR 177 Query: 423 GFGFVTMASKEDLDSAISALDGQEMDGRP 509 G GF M S E ++ I+ +G+ + P Sbjct: 178 GVGFARMESTEKCEAIITHFNGKYIKTPP 206 Score = 34.7 bits (78), Expect = 0.23 Identities = 20/57 (35%), Positives = 28/57 (49%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFN 203 NLP +D + L + G V ++ I SG SRG GF M + E+ + I FN Sbjct: 143 NLPLSMDEQELEGMLKPFGQV-ISTRILRDTSGASRGVGFARMESTEKCEAIITHFN 198
>MRD1_CRYNE (Q5KJL5) Multiple RNA-binding domain-containing protein 1| Length = 769 Score = 54.7 bits (130), Expect = 2e-07 Identities = 42/145 (28%), Positives = 71/145 (48%), Gaps = 12/145 (8%) Frame = +3 Query: 135 SRGFGFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFAS------- 293 S G+GFV T E A KA++ ++I G+ L V + AQRG+ +R ++ Sbjct: 580 SMGYGFVGFKTKEAATKALKALEGFEIDGKSLEV-KFAQRGAEDDRETKKGGDAEGGKTK 638 Query: 294 SFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATI---VYDRETG--RSRGFGFVTMASKED 458 S + V NLP++A + ++FS +G++ + + TG +RGF F+ + + Sbjct: 639 STKVLVKNLPFEATKKDVRELFSAYGQLKSLRLPRKAVPTSTGAQSTRGFAFLEFTTHTE 698 Query: 459 LDSAISALDGQEMDGRPLRVNVAAE 533 A+ AL + GR L + A E Sbjct: 699 AARAMEALKHTHLLGRHLVLQWANE 723 Score = 36.2 bits (82), Expect = 0.081 Identities = 20/44 (45%), Positives = 26/44 (59%) Frame = +3 Query: 417 SRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQRG 548 S G+GFV +KE A+ AL+G E+DG+ L V A QRG Sbjct: 580 SMGYGFVGFKTKEAATKALKALEGFEIDGKSLEVKFA----QRG 619 Score = 31.2 bits (69), Expect = 2.6 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 5/84 (5%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEV----IYNRESGQS-RGFGFVTMSTIEEADKAIET 197 NLP++ + + +LF G ++ + + QS RGF F+ +T EA +A+E Sbjct: 646 NLPFEATKKDVRELFSAYGQLKSLRLPRKAVPTSTGAQSTRGFAFLEFTTHTEAARAMEA 705 Query: 198 FNRYDISGRLLNVNRAAQRGSRVE 269 + GR L V + A G V+ Sbjct: 706 LKHTHLLGRHL-VLQWANEGEEVD 728
>RBMS2_HUMAN (Q15434) RNA-binding motif, single-stranded-interacting protein 2| (Suppressor of CDC2 with RNA-binding motif 3) Length = 407 Score = 54.3 bits (129), Expect = 3e-07 Identities = 37/149 (24%), Positives = 65/149 (43%) Frame = +3 Query: 63 LAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYDISGRLLNVNR 242 L +L G + + I ++ + + +G+GFV + A KA+ + Sbjct: 72 LVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQ-------- 123 Query: 243 AAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSR 422 AQ + E+ P Y+ NLP ++ L M G+V++ I+ D +G SR Sbjct: 124 -AQMAKQQEQDPTNL------YISNLPLSMDEQELEGMLKPFGQVISTRILRD-TSGTSR 175 Query: 423 GFGFVTMASKEDLDSAISALDGQEMDGRP 509 G GF M S E ++ I+ +G+ + P Sbjct: 176 GVGFARMESTEKCEAIITHFNGKYIKTPP 204 Score = 34.7 bits (78), Expect = 0.23 Identities = 20/57 (35%), Positives = 28/57 (49%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFN 203 NLP +D + L + G V ++ I SG SRG GF M + E+ + I FN Sbjct: 141 NLPLSMDEQELEGMLKPFGQV-ISTRILRDTSGTSRGVGFARMESTEKCEAIITHFN 196
>TRA2B_RAT (P62997) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (RA301) Length = 288 Score = 54.3 bits (129), Expect = 3e-07 Identities = 26/66 (39%), Positives = 44/66 (66%), Gaps = 1/66 (1%) Frame = +3 Query: 345 LVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNV 524 L ++FS++G + + +IVYD+++ RSRGF FV + +D A +G E+DGR +RV+ Sbjct: 134 LREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 193 Query: 525 A-AERP 539 + +RP Sbjct: 194 SITKRP 199 Score = 43.9 bits (102), Expect = 4e-04 Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 2/77 (2%) Frame = +3 Query: 15 PRCTSG--NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKA 188 P C G L L ++F + G + ++Y+++S +SRGF FV +++A +A Sbjct: 116 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEA 175 Query: 189 IETFNRYDISGRLLNVN 239 E N ++ GR + V+ Sbjct: 176 KERANGMELDGRRIRVD 192
>TRA2B_MOUSE (P62996) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (Silica-induced gene 41 protein) (SIG-41) Length = 288 Score = 54.3 bits (129), Expect = 3e-07 Identities = 26/66 (39%), Positives = 44/66 (66%), Gaps = 1/66 (1%) Frame = +3 Query: 345 LVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNV 524 L ++FS++G + + +IVYD+++ RSRGF FV + +D A +G E+DGR +RV+ Sbjct: 134 LREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 193 Query: 525 A-AERP 539 + +RP Sbjct: 194 SITKRP 199 Score = 43.9 bits (102), Expect = 4e-04 Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 2/77 (2%) Frame = +3 Query: 15 PRCTSG--NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKA 188 P C G L L ++F + G + ++Y+++S +SRGF FV +++A +A Sbjct: 116 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEA 175 Query: 189 IETFNRYDISGRLLNVN 239 E N ++ GR + V+ Sbjct: 176 KERANGMELDGRRIRVD 192
>TRA2B_HUMAN (P62995) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) Length = 288 Score = 54.3 bits (129), Expect = 3e-07 Identities = 26/66 (39%), Positives = 44/66 (66%), Gaps = 1/66 (1%) Frame = +3 Query: 345 LVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNV 524 L ++FS++G + + +IVYD+++ RSRGF FV + +D A +G E+DGR +RV+ Sbjct: 134 LREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 193 Query: 525 A-AERP 539 + +RP Sbjct: 194 SITKRP 199 Score = 43.9 bits (102), Expect = 4e-04 Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 2/77 (2%) Frame = +3 Query: 15 PRCTSG--NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKA 188 P C G L L ++F + G + ++Y+++S +SRGF FV +++A +A Sbjct: 116 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEA 175 Query: 189 IETFNRYDISGRLLNVN 239 E N ++ GR + V+ Sbjct: 176 KERANGMELDGRRIRVD 192
>CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (Deadenylation factor EDEN-BP) (Brain protein F41) Length = 486 Score = 53.9 bits (128), Expect = 4e-07 Identities = 37/135 (27%), Positives = 65/135 (48%), Gaps = 2/135 (1%) Frame = +3 Query: 126 SGQSRGFGFVTMSTIEEADKAIETFNRYDISG--RLLNVNRAAQRGSRVERPPRQFASSF 299 SG S G G ST+E +A +Y + L N N Q+ ++ Sbjct: 346 SGLSNGTG----STMEALTQAYSGIQQYAAAALPTLYNQNLLTQQSIGAAGSQKEGPEGA 401 Query: 300 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 479 ++ +LP + D L+QMF G VV+A + D++T S+ FGFV+ + +AI + Sbjct: 402 NLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQS 461 Query: 480 LDGQEMDGRPLRVNV 524 ++G ++ + L+V + Sbjct: 462 MNGFQIGMKRLKVQL 476 Score = 42.7 bits (99), Expect = 9e-04 Identities = 39/161 (24%), Positives = 71/161 (44%), Gaps = 3/161 (1%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESG--QSRGFGFVTMSTIEEADKAIETFN 203 G +P + L +LF+Q G V ++ +R QS+G FVT T + A +A + Sbjct: 21 GQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEAQNALH 80 Query: 204 RYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVN 383 + L ++ Q + + ++G + + ++ + MFS G++ Sbjct: 81 NMKV---LPGMHHPIQM-KPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEE 136 Query: 384 ATIVYDRETGRSRGFGFVTMASKEDLDSAISAL-DGQEMDG 503 I+ + G SRG FVT ++ +AI A+ Q M+G Sbjct: 137 CRILRGPD-GLSRGCAFVTFTTRTMAQTAIKAMHQAQTMEG 176 Score = 37.7 bits (86), Expect = 0.028 Identities = 21/68 (30%), Positives = 36/68 (52%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 +LP + + L Q+F G V A+V ++++ S+ FGFV+ A AI++ N + Sbjct: 407 HLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQ 466 Query: 213 ISGRLLNV 236 I + L V Sbjct: 467 IGMKRLKV 474
>CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (50 kDa Nuclear polyadenylated RNA-binding protein) (EDEN-BP) Length = 486 Score = 53.9 bits (128), Expect = 4e-07 Identities = 37/135 (27%), Positives = 65/135 (48%), Gaps = 2/135 (1%) Frame = +3 Query: 126 SGQSRGFGFVTMSTIEEADKAIETFNRYDISG--RLLNVNRAAQRGSRVERPPRQFASSF 299 SG S G G ST+E +A +Y + L N N Q+ ++ Sbjct: 346 SGLSNGTG----STMEALTQAYSGIQQYAAAALPTLYNQNLLTQQSIGAAGSQKEGPEGA 401 Query: 300 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 479 ++ +LP + D L+QMF G VV+A + D++T S+ FGFV+ + +AI + Sbjct: 402 NLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQS 461 Query: 480 LDGQEMDGRPLRVNV 524 ++G ++ + L+V + Sbjct: 462 MNGFQIGMKRLKVQL 476 Score = 43.1 bits (100), Expect = 7e-04 Identities = 40/161 (24%), Positives = 71/161 (44%), Gaps = 3/161 (1%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESG--QSRGFGFVTMSTIEEADKAIETFN 203 G +P + L +LF+Q G V V+ +R QS+G FVT T + A +A + Sbjct: 21 GQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALH 80 Query: 204 RYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVN 383 + L ++ Q + + ++G + + ++ + MFS G++ Sbjct: 81 NMKV---LPGMHHPIQM-KPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEE 136 Query: 384 ATIVYDRETGRSRGFGFVTMASKEDLDSAISAL-DGQEMDG 503 I+ + G SRG FVT ++ +AI A+ Q M+G Sbjct: 137 CRILRGPD-GLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEG 176 Score = 37.7 bits (86), Expect = 0.028 Identities = 21/68 (30%), Positives = 36/68 (52%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 +LP + + L Q+F G V A+V ++++ S+ FGFV+ A AI++ N + Sbjct: 407 HLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQ 466 Query: 213 ISGRLLNV 236 I + L V Sbjct: 467 IGMKRLKV 474
>YDB2_SCHPO (Q10355) Hypothetical RNA-binding protein C22E12.02 in chromosome I| Length = 219 Score = 53.9 bits (128), Expect = 4e-07 Identities = 29/77 (37%), Positives = 44/77 (57%) Frame = +3 Query: 297 FRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS 476 FR +VGNL D L Q FSE+ +V +V DRE G++RGFGFV+ + A Sbjct: 30 FRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDRE-GKTRGFGFVSFKDSDQFLKAWR 88 Query: 477 ALDGQEMDGRPLRVNVA 527 +G+ + RP++++ A Sbjct: 89 EKNGKYIGSRPVKLSRA 105 Score = 40.4 bits (93), Expect = 0.004 Identities = 26/72 (36%), Positives = 40/72 (55%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 GNL DV+ E L Q F + + +V+ +RE G++RGFGFV+ ++ KA N Sbjct: 35 GNLGNDVNDESLYQAFSEYPSLVKTKVVRDRE-GKTRGFGFVSFKDSDQFLKAWREKNGK 93 Query: 210 DISGRLLNVNRA 245 I R + ++RA Sbjct: 94 YIGSRPVKLSRA 105
>YDC1_SCHPO (Q10422) Hypothetical RNA-binding protein C25G10.01 in chromosome I| Length = 297 Score = 53.5 bits (127), Expect = 5e-07 Identities = 29/97 (29%), Positives = 47/97 (48%) Frame = +3 Query: 48 VDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYDISGRL 227 + + L Q+F + G V ++ + SRGFGF++ ST+EEA AI+ N + GR+ Sbjct: 112 MQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNLNSQEFYGRV 171 Query: 228 LNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAED 338 LNV +A + P + R + P +D Sbjct: 172 LNVQKAKRSRPHSPTPGKYMGYDRRRNSRDFPSNNKD 208 Score = 50.8 bits (120), Expect = 3e-06 Identities = 27/74 (36%), Positives = 43/74 (58%) Frame = +3 Query: 306 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 485 +V + + ++ L Q+FS+ G V + I+ + T SRGFGF++ ++ E+ SAI L+ Sbjct: 104 FVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNLN 163 Query: 486 GQEMDGRPLRVNVA 527 QE GR L V A Sbjct: 164 SQEFYGRVLNVQKA 177
>RSD1_SCHPO (O13845) RNA-binding protein rsd1| Length = 604 Score = 53.5 bits (127), Expect = 5e-07 Identities = 40/166 (24%), Positives = 74/166 (44%), Gaps = 11/166 (6%) Frame = +3 Query: 54 SERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYDISGRLLN 233 S L F+QAG V A+++ ++ SG+S+G +V + AI + RLL Sbjct: 253 SRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIALSGK-----RLLG 307 Query: 234 V-----------NRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVV 380 + NR A+ + + R R V N+ + D + +F G++ Sbjct: 308 LPVIVQLTEAEKNRKAREAAELARAASAEIPFHRLCVSNIHFNLTDEDVKAIFEPFGDIE 367 Query: 381 NATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRV 518 + D + RS+GFG++ + +A+ ++G ++ GR +RV Sbjct: 368 FVHLQRD-DQNRSKGFGYIQYRNPISARNALEKMNGFDLAGRNMRV 412 Score = 42.4 bits (98), Expect = 0.001 Identities = 28/103 (27%), Positives = 50/103 (48%) Frame = +3 Query: 237 NRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGR 416 +R +R S++ R + F + + N + L F + G V +A IV D+ +GR Sbjct: 223 SRPRERSSKLSEEERDRRTVFVSQLAN---RLTSRELYDFFEQAGPVRDAQIVRDKISGR 279 Query: 417 SRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 545 S+G +V ++ + +AI AL G+ + G P+ V + R Sbjct: 280 SKGVAYVEFCHEDSVQAAI-ALSGKRLLGLPVIVQLTEAEKNR 321
>ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (CArG-binding factor-A) (CBF-A) Length = 285 Score = 53.5 bits (127), Expect = 5e-07 Identities = 32/148 (21%), Positives = 70/148 (47%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G L +D + L F + G V + + +G+SRGFGF+ +K ++ + Sbjct: 80 GGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ-KEH 138 Query: 210 DISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNAT 389 + GR+++ +A +++ P + + +VG L +A + ++ + F + GE+ Sbjct: 139 RLDGRVIDPKKA----MAMKKDPVK-----KIFVGGLNPEATEEKIREYFGQFGEIEAIE 189 Query: 390 IVYDRETGRSRGFGFVTMASKEDLDSAI 473 + D + + RGF F+T ++ + + Sbjct: 190 LPIDPKLNKRRGFVFITFKEEDPVKKVL 217 Score = 53.1 bits (126), Expect = 6e-07 Identities = 30/71 (42%), Positives = 39/71 (54%), Gaps = 2/71 (2%) Frame = +3 Query: 300 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 479 + +VG L W L F++ GEVV+ TI D TGRSRGFGF+ +D S Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILF---KDSSSVEKV 132 Query: 480 LDGQE--MDGR 506 LD +E +DGR Sbjct: 133 LDQKEHRLDGR 143 Score = 31.6 bits (70), Expect = 2.0 Identities = 15/55 (27%), Positives = 27/55 (49%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIE 194 G L + E++ + F Q G +E E+ + + + RGF F+T + K +E Sbjct: 164 GGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 218
>TCG1_SCHPO (Q9HEQ9) Single-stranded TG1-3 DNA-binding protein| Length = 348 Score = 53.5 bits (127), Expect = 5e-07 Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 4/103 (3%) Frame = +3 Query: 231 NVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRET 410 +V+ A + P Q A FR +VG L + S + +F G V TI + R Sbjct: 22 SVDAAVHASAEQSNTPAQQADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVR 81 Query: 411 GRSR----GFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVA 527 +R G FVT ++ED+D AI L+G+ +D R + V A Sbjct: 82 RGTRLVPSGIAFVTFNNQEDVDKAIETLNGKTLDDREIVVQKA 124 Score = 37.4 bits (85), Expect = 0.036 Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 4/76 (5%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSR----GFGFVTMSTIEEADKAIET 197 G L + LF+ G V + + R +R G FVT + E+ DKAIET Sbjct: 49 GRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDKAIET 108 Query: 198 FNRYDISGRLLNVNRA 245 N + R + V +A Sbjct: 109 LNGKTLDDREIVVQKA 124 Score = 34.7 bits (78), Expect = 0.23 Identities = 18/47 (38%), Positives = 26/47 (55%) Frame = +3 Query: 405 ETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 545 E R RGFGFV+ A+ ED AI ++G+++ L V A R + Sbjct: 253 EQRRGRGFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVKSAVFREDK 299 Score = 31.2 bits (69), Expect = 2.6 Identities = 16/44 (36%), Positives = 22/44 (50%) Frame = +3 Query: 123 ESGQSRGFGFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQR 254 E + RGFGFV+ + E+ +AIE N + L V A R Sbjct: 253 EQRRGRGFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVKSAVFR 296
>MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing protein 1| Length = 861 Score = 53.5 bits (127), Expect = 5e-07 Identities = 43/174 (24%), Positives = 82/174 (47%), Gaps = 7/174 (4%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQ-----SRGFGFVTMSTIEEADKAIET 197 NL + S++L F VA+V + Q S GFGFV T E+A I Sbjct: 646 NLNFKTTSQQLTDRFKVFSGFVVAQVKTKPDPKQKNKVLSMGFGFVEFRTKEQATAVISA 705 Query: 198 FNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEV 377 + I G + + + ++G+ + ++ A + + V NLP++A + ++F+ G++ Sbjct: 706 MDGTVIDGHKIQLKLSHRQGNAGSQEKKK-AKNGKIIVKNLPFEATRKDVFELFNSFGQL 764 Query: 378 VNATIV--YDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAE 533 + + +D+ +RGF FV ++ ++A+ L G + GR L + A + Sbjct: 765 KSVRVPKKFDKS---ARGFAFVEFVLPKEAENAMDQLQGVHLLGRRLVMQPAEQ 815 Score = 47.8 bits (112), Expect = 3e-05 Identities = 32/138 (23%), Positives = 61/138 (44%) Frame = +3 Query: 120 RESGQSRGFGFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSF 299 RE+G+ G F T +E+++ + ++ + + +A + + Sbjct: 276 RENGEKVGEEFATNVQDKESEENSQATPAEELQEEIPDEEQAIAK----------IQKTG 325 Query: 300 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 479 R ++ N+ + + + ++FS +GE+ + D TG S+GF +V A E+ A Sbjct: 326 RLFLRNILYSSTEDDFKKLFSPYGELKEVHVAVDTRTGNSKGFAYVLFAKPEEAVQAYIE 385 Query: 480 LDGQEMDGRPLRVNVAAE 533 LD Q GR L + A E Sbjct: 386 LDKQIFQGRLLHILAADE 403 Score = 36.6 bits (83), Expect = 0.062 Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 5/86 (5%) Frame = +3 Query: 306 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGR-----SRGFGFVTMASKEDLDSA 470 ++ NL ++ +L F V A + + + S GFGFV +KE + Sbjct: 643 FIKNLNFKTTSQQLTDRFKVFSGFVVAQVKTKPDPKQKNKVLSMGFGFVEFRTKEQATAV 702 Query: 471 ISALDGQEMDGRPLRVNVAAERPQRG 548 ISA+DG +DG +++ ++ + G Sbjct: 703 ISAMDGTVIDGHKIQLKLSHRQGNAG 728 Score = 36.6 bits (83), Expect = 0.062 Identities = 19/68 (27%), Positives = 34/68 (50%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 N+ Y + +LF G ++ V + +G S+GF +V + EEA +A ++ Sbjct: 331 NILYSSTEDDFKKLFSPYGELKEVHVAVDTRTGNSKGFAYVLFAKPEEAVQAYIELDKQI 390 Query: 213 ISGRLLNV 236 GRLL++ Sbjct: 391 FQGRLLHI 398 Score = 34.7 bits (78), Expect = 0.23 Identities = 22/90 (24%), Positives = 40/90 (44%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 NLP++ + + +LF+ G ++ V + +RGF FV +EA+ A++ Sbjct: 744 NLPFEATRKDVFELFNSFGQLKSVRVPKKFDKS-ARGFAFVEFVLPKEAENAMDQLQGVH 802 Query: 213 ISGRLLNVNRAAQRGSRVERPPRQFASSFR 302 + GR L + A Q + E + R Sbjct: 803 LLGRRLVMQPAEQEAANAEEELERMTKKVR 832
>MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing protein 1| Length = 878 Score = 53.5 bits (127), Expect = 5e-07 Identities = 42/179 (23%), Positives = 81/179 (45%), Gaps = 9/179 (5%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQ-----SRGFGFVTMSTIEEADKAIET 197 NL + S++L + F VA+V + Q S GFGF T E+A+ I Sbjct: 657 NLNFSTTSQQLTEKFKPFNGFVVAQVKTKPDPKQPGKTLSMGFGFAEFKTKEQANAVISA 716 Query: 198 FNRYDISGRLLNVNRAAQRGSRVERPP--RQFASSFRAYVGNLPWQAEDSRLVQMFSEHG 371 + G L + + ++G+ ++ + + V NLP++A + ++FS G Sbjct: 717 MEGTILDGHKLQLKLSHRQGTSTTNASSKKKKKNQGKIIVKNLPFEATRKDVFELFSSFG 776 Query: 372 EVVNATIV--YDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQ 542 ++ + + +D+ +RGF FV ++ ++A+ L G + GR L + + P+ Sbjct: 777 QLKSVRVPKKFDKS---ARGFAFVEFLLPKEAENAMDQLQGVHLLGRRLVMEFVEQDPE 832 Score = 46.6 bits (109), Expect = 6e-05 Identities = 24/87 (27%), Positives = 45/87 (51%) Frame = +3 Query: 258 SRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFV 437 S E+ ++ + R ++ N+ + A + ++FS +GE+ I D TG+S+GF +V Sbjct: 317 SEEEKSLKKIRETGRLFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYV 376 Query: 438 TMASKEDLDSAISALDGQEMDGRPLRV 518 + ++ +A LD Q GR L + Sbjct: 377 LFKNADNAATAFVELDKQIFQGRLLHI 403 Score = 38.1 bits (87), Expect = 0.021 Identities = 18/68 (26%), Positives = 32/68 (47%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 N+ Y + +LF G +E + + +GQS+GF +V + A A ++ Sbjct: 336 NILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNADNAATAFVELDKQI 395 Query: 213 ISGRLLNV 236 GRLL++ Sbjct: 396 FQGRLLHI 403 Score = 35.8 bits (81), Expect = 0.11 Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 5/79 (6%) Frame = +3 Query: 306 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYD---RETGR--SRGFGFVTMASKEDLDSA 470 ++ NL + +L + F V A + ++ G+ S GFGF +KE ++ Sbjct: 654 FIKNLNFSTTSQQLTEKFKPFNGFVVAQVKTKPDPKQPGKTLSMGFGFAEFKTKEQANAV 713 Query: 471 ISALDGQEMDGRPLRVNVA 527 ISA++G +DG L++ ++ Sbjct: 714 ISAMEGTILDGHKLQLKLS 732 Score = 31.2 bits (69), Expect = 2.6 Identities = 21/80 (26%), Positives = 37/80 (46%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 NLP++ + + +LF G ++ V + +RGF FV +EA+ A++ Sbjct: 758 NLPFEATRKDVFELFSSFGQLKSVRVPKKFDKS-ARGFAFVEFLLPKEAENAMDQLQGVH 816 Query: 213 ISGRLLNVNRAAQRGSRVER 272 + GR L + Q VE+ Sbjct: 817 LLGRRLVMEFVEQDPEDVEQ 836
>RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-rich 4| (RNA-binding protein srp-2) (CeSC35) Length = 196 Score = 53.1 bits (126), Expect = 6e-07 Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 1/78 (1%) Frame = +3 Query: 309 VGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDG 488 + NL +Q + L + F +G++ + I D+ + +S+GFGFV + D + A+ DG Sbjct: 23 IDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTDG 82 Query: 489 QEMDGRPLRVNVAA-ERP 539 + +DGR LRV +A +RP Sbjct: 83 KLVDGRELRVTLAKYDRP 100 Score = 36.6 bits (83), Expect = 0.062 Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 13/103 (12%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 NL Y L + F++ G + + ++ S QS+GFGFV +A+ A++ + Sbjct: 25 NLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTDGKL 84 Query: 213 ISGRLLNV-------------NRAAQRGSRVERPPRQFASSFR 302 + GR L V R G R R PR+ + S R Sbjct: 85 VDGRELRVTLAKYDRPSDERGGRGGGGGRRRSRSPRRRSRSPR 127
>SAFB2_MOUSE (Q80YR5) Scaffold attachment factor B2| Length = 991 Score = 52.8 bits (125), Expect = 8e-07 Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 6/100 (6%) Frame = +3 Query: 3 EGRRPRCTSGN------LPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMS 164 E R C+SG L + L LF + G V A+V+ N S +R +GFVTMS Sbjct: 441 EKGRASCSSGRNLWVSGLSSSTRAADLKSLFSKHGKVIGAKVVTNARSPGARCYGFVTMS 500 Query: 165 TIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQ 284 T +EA K I +R ++ GR+++V +A S + R+ Sbjct: 501 TSDEATKCISHLHRTELHGRMISVEKAKNEPSEKKSSDRR 540 Score = 49.3 bits (116), Expect = 9e-06 Identities = 26/84 (30%), Positives = 44/84 (52%) Frame = +3 Query: 288 ASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDS 467 +S +V L + L +FS+HG+V+ A +V + + +R +GFVTM++ ++ Sbjct: 448 SSGRNLWVSGLSSSTRAADLKSLFSKHGKVIGAKVVTNARSPGARCYGFVTMSTSDEATK 507 Query: 468 AISALDGQEMDGRPLRVNVAAERP 539 IS L E+ GR + V A P Sbjct: 508 CISHLHRTELHGRMISVEKAKNEP 531
>ROAA_HUMAN (Q99729) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (APOBEC-1-binding protein 1) (ABBP-1) Length = 331 Score = 52.8 bits (125), Expect = 8e-07 Identities = 30/71 (42%), Positives = 39/71 (54%), Gaps = 2/71 (2%) Frame = +3 Query: 300 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 479 + +VG L W L F++ GEVV+ TI D TGRSRGFGF+ +D S Sbjct: 69 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILF---KDAASVEKV 125 Query: 480 LDGQE--MDGR 506 LD +E +DGR Sbjct: 126 LDQKEHRLDGR 136 Score = 52.4 bits (124), Expect = 1e-06 Identities = 34/149 (22%), Positives = 69/149 (46%), Gaps = 1/149 (0%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G L +D + L F + G V + + +G+SRGFGF+ +K ++ + Sbjct: 73 GGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEH 131 Query: 210 DISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNL-PWQAEDSRLVQMFSEHGEVVNA 386 + GR+++ +A +++ P + + +VG L P + ++ + F E GE+ Sbjct: 132 RLDGRVIDPKKA----MAMKKDPVK-----KIFVGGLNPESPTEEKIREYFGEFGEIEAI 182 Query: 387 TIVYDRETGRSRGFGFVTMASKEDLDSAI 473 + D + + RGF F+T +E + + Sbjct: 183 ELPMDPKLNKRRGFVFITFKEEEPVKKVL 211 Score = 30.0 bits (66), Expect = 5.8 Identities = 14/52 (26%), Positives = 25/52 (48%) Frame = +3 Query: 39 PYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIE 194 P E++ + F + G +E E+ + + + RGF F+T E K +E Sbjct: 161 PESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 212
>MRD1_ASPFU (Q4WJT7) Multiple RNA-binding domain-containing protein 1| Length = 825 Score = 52.8 bits (125), Expect = 8e-07 Identities = 49/194 (25%), Positives = 82/194 (42%), Gaps = 17/194 (8%) Frame = +3 Query: 3 EGRRPRCTSG----NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQ-----SRGFGFV 155 +G P TS NL + +ER ++F A + + + S GFGFV Sbjct: 589 DGDEPVVTSTLFVKNLNFSTTNERFTEVFKPLDGFVSARIKTKPDPKRPGKTLSMGFGFV 648 Query: 156 TMSTIEEADKAIETFNRYDISGRLLNVNR------AAQRGSRVERPPRQFASSFRAYVGN 317 T +A A+ + Y + L V AA+ R + + A + + N Sbjct: 649 DFRTKAQAQAALAAMDGYKLDQHELVVRASNKAMDAAEERRREDTAKKIAARRTKIIIKN 708 Query: 318 LPWQAEDSRLVQMFSEHGEVVNATIV--YDRETGRSRGFGFVTMASKEDLDSAISALDGQ 491 LP+QA + +F +G++ + + +DR +RGFGF S + ++A+ AL Sbjct: 709 LPFQATKKDVRSLFGAYGQLRSVRVPKKFDRS---ARGFGFADFVSAREAENAMDALKNT 765 Query: 492 EMDGRPLRVNVAAE 533 + GR L + A E Sbjct: 766 HLLGRRLVLEFANE 779 Score = 48.1 bits (113), Expect = 2e-05 Identities = 23/75 (30%), Positives = 39/75 (52%) Frame = +3 Query: 294 SFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAI 473 S R +V NLP+ A +S L +FS+ G++ + +D + S+GF +V + A Sbjct: 300 SSRLFVRNLPYDASESDLEPVFSKFGKIEEIHVAFDTRSTTSKGFAYVQYIEPDAAVQAY 359 Query: 474 SALDGQEMDGRPLRV 518 LDG+ GR + + Sbjct: 360 KELDGKHFQGRLMHI 374 Score = 40.0 bits (92), Expect = 0.006 Identities = 20/68 (29%), Positives = 34/68 (50%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 NLPYD L +F + G +E V ++ S S+GF +V + A +A + + Sbjct: 307 NLPYDASESDLEPVFSKFGKIEEIHVAFDTRSTTSKGFAYVQYIEPDAAVQAYKELDGKH 366 Query: 213 ISGRLLNV 236 GRL+++ Sbjct: 367 FQGRLMHI 374
>MRD1_EMENI (Q5BGA9) Multiple RNA-binding domain-containing protein 1| Length = 819 Score = 52.4 bits (124), Expect = 1e-06 Identities = 42/142 (29%), Positives = 65/142 (45%), Gaps = 9/142 (6%) Frame = +3 Query: 135 SRGFGFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRG--SRVERPPRQFASSFRA- 305 S GFGF T +A A+ N Y + L V RA+ +G + ER A A Sbjct: 637 SMGFGFADFKTKAQAQAALAVMNGYTLDRHTLVV-RASHKGMDAAEERRKEDTAKKIAAR 695 Query: 306 ----YVGNLPWQAEDSRLVQMFSEHGEVVNATIV--YDRETGRSRGFGFVTMASKEDLDS 467 + NLP+QA + +F +G++ + + +DR +RGFGF S + ++ Sbjct: 696 RTKIIIKNLPFQATKKDVRSLFGAYGQLRSVRVPKKFDRS---ARGFGFADFVSAREAEN 752 Query: 468 AISALDGQEMDGRPLRVNVAAE 533 A+ AL + GR L + A E Sbjct: 753 AMDALKNTHLLGRRLVLEFANE 774 Score = 45.8 bits (107), Expect = 1e-04 Identities = 24/81 (29%), Positives = 42/81 (51%) Frame = +3 Query: 294 SFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAI 473 S R +V NL ++ ++S L +FS G++ + +D S+GF +V A + A Sbjct: 294 SARLFVRNLSYETKESELEPVFSPFGKIEEIHVAFDTRFTTSKGFAYVQYADPDAAVEAY 353 Query: 474 SALDGQEMDGRPLRVNVAAER 536 LDG+ GR L + A+++ Sbjct: 354 RNLDGKIFQGRLLHILPASQK 374 Score = 37.4 bits (85), Expect = 0.036 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 3/77 (3%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 NL Y+ L +F G +E V ++ S+GF +V + + D A+E + D Sbjct: 301 NLSYETKESELEPVFSPFGKIEEIHVAFDTRFTTSKGFAYVQYA---DPDAAVEAYRNLD 357 Query: 213 ---ISGRLLNVNRAAQR 254 GRLL++ A+Q+ Sbjct: 358 GKIFQGRLLHILPASQK 374
>RU17_HUMAN (P08621) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 437 Score = 52.4 bits (124), Expect = 1e-06 Identities = 31/127 (24%), Positives = 59/127 (46%) Frame = +3 Query: 171 EEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLV 350 E ++ +E R I R V + P Q + +V + + +S+L Sbjct: 61 ETREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLR 120 Query: 351 QMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAA 530 + F +G + +VY + +G+ RG+ F+ + D+ SA DG+++DGR + V+V Sbjct: 121 REFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180 Query: 531 ERPQRGF 551 R +G+ Sbjct: 181 GRTVKGW 187 Score = 35.4 bits (80), Expect = 0.14 Identities = 20/80 (25%), Positives = 38/80 (47%) Frame = +3 Query: 42 YDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYDISG 221 YD +L + F+ G ++ ++Y++ SG+ RG+ F+ + A + + I G Sbjct: 112 YDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDG 171 Query: 222 RLLNVNRAAQRGSRVERPPR 281 R + V+ R + RP R Sbjct: 172 RRVLVDVERGRTVKGWRPRR 191
>RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-rich 3 (CeSF2)| (CeSF2/ASF) Length = 258 Score = 52.4 bits (124), Expect = 1e-06 Identities = 29/91 (31%), Positives = 42/91 (46%) Frame = +3 Query: 276 PRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKE 455 PR + + YVGNLP + + +F ++G + I ++GR F FV Sbjct: 2 PRGGSEDQKVYVGNLPGDVREKEVEDIFHKYGRIKYVDI----KSGRGPAFAFVEFEDHR 57 Query: 456 DLDSAISALDGQEMDGRPLRVNVAAERPQRG 548 D + A+ A DG E DGR +RV RG Sbjct: 58 DAEDAVRARDGYEFDGRRIRVEFTRGVGPRG 88
>RU17_MOUSE (Q62376) U1 small nuclear ribonucleoprotein 70 kDa (U1 SNRNP 70| kDa) (snRNP70) Length = 448 Score = 52.4 bits (124), Expect = 1e-06 Identities = 31/127 (24%), Positives = 59/127 (46%) Frame = +3 Query: 171 EEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLV 350 E ++ +E R I R V + P Q + +V + + +S+L Sbjct: 61 ETREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLR 120 Query: 351 QMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAA 530 + F +G + +VY + +G+ RG+ F+ + D+ SA DG+++DGR + V+V Sbjct: 121 REFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180 Query: 531 ERPQRGF 551 R +G+ Sbjct: 181 GRTVKGW 187 Score = 35.4 bits (80), Expect = 0.14 Identities = 20/80 (25%), Positives = 38/80 (47%) Frame = +3 Query: 42 YDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYDISG 221 YD +L + F+ G ++ ++Y++ SG+ RG+ F+ + A + + I G Sbjct: 112 YDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDG 171 Query: 222 RLLNVNRAAQRGSRVERPPR 281 R + V+ R + RP R Sbjct: 172 RRVLVDVERGRTVKGWRPRR 191
>PPIE_MOUSE (Q9QZH3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 52.4 bits (124), Expect = 1e-06 Identities = 30/80 (37%), Positives = 43/80 (53%) Frame = +3 Query: 306 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 485 YVG L + +D L F G++ + I D ET + RGF FV ED +AI ++ Sbjct: 9 YVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMN 68 Query: 486 GQEMDGRPLRVNVAAERPQR 545 E+ GR +RVN+A +P R Sbjct: 69 ESELFGRTIRVNLA--KPMR 86 Score = 40.8 bits (94), Expect = 0.003 Identities = 23/72 (31%), Positives = 36/72 (50%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G L +VD + L F G + ++ + E+ + RGF FV E+A AI+ N Sbjct: 11 GGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNES 70 Query: 210 DISGRLLNVNRA 245 ++ GR + VN A Sbjct: 71 ELFGRTIRVNLA 82
>PPIE_HUMAN (Q9UNP9) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 52.4 bits (124), Expect = 1e-06 Identities = 30/80 (37%), Positives = 43/80 (53%) Frame = +3 Query: 306 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 485 YVG L + +D L F G++ + I D ET + RGF FV ED +AI ++ Sbjct: 9 YVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMN 68 Query: 486 GQEMDGRPLRVNVAAERPQR 545 E+ GR +RVN+A +P R Sbjct: 69 ESELFGRTIRVNLA--KPMR 86 Score = 40.8 bits (94), Expect = 0.003 Identities = 23/72 (31%), Positives = 36/72 (50%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G L +VD + L F G + ++ + E+ + RGF FV E+A AI+ N Sbjct: 11 GGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNES 70 Query: 210 DISGRLLNVNRA 245 ++ GR + VN A Sbjct: 71 ELFGRTIRVNLA 82
>HNRPR_HUMAN (O43390) Heterogeneous nuclear ribonucleoprotein R (hnRNP R)| Length = 633 Score = 52.0 bits (123), Expect = 1e-06 Identities = 39/151 (25%), Positives = 73/151 (48%), Gaps = 1/151 (0%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G +P D+ + L LF++AG + ++ + SGQ+RG+ F+T E A +A++ + Y Sbjct: 170 GKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKLCDSY 229 Query: 210 DI-SGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNA 386 +I G+ L V + ++ R +VG++P +++ FS+ E + Sbjct: 230 EIRPGKHLGVCIS--------------VANNRLFVGSIPKNKTKENILEEFSKVTEGLVD 275 Query: 387 TIVYDRETGRSRGFGFVTMASKEDLDSAISA 479 I+Y + + + GF + ED SA A Sbjct: 276 VILYHQPDDKKKNRGFCFL-EYEDHKSAAQA 305 Score = 42.7 bits (99), Expect = 9e-04 Identities = 18/64 (28%), Positives = 34/64 (53%) Frame = +3 Query: 306 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 485 +VG +P + LV +F + G + + ++ D +G++RG+ F+T KE A+ D Sbjct: 168 FVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKLCD 227 Query: 486 GQEM 497 E+ Sbjct: 228 SYEI 231
>RU17_XENTR (Q66II8) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 471 Score = 52.0 bits (123), Expect = 1e-06 Identities = 23/82 (28%), Positives = 47/82 (57%) Frame = +3 Query: 306 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 485 +V + + +S+L + F +G + +VY++ +G+ RG+ F+ + D+ SA D Sbjct: 106 FVARVNYDTTESKLRREFEVYGPIKRIHMVYNKRSGKPRGYAFIEYEHERDMHSAYKHAD 165 Query: 486 GQEMDGRPLRVNVAAERPQRGF 551 G+++DGR + V+V R +G+ Sbjct: 166 GKKIDGRRVLVDVERGRTVKGW 187 Score = 37.4 bits (85), Expect = 0.036 Identities = 21/80 (26%), Positives = 38/80 (47%) Frame = +3 Query: 42 YDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYDISG 221 YD +L + F+ G ++ ++YN+ SG+ RG+ F+ + A + + I G Sbjct: 112 YDTTESKLRREFEVYGPIKRIHMVYNKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDG 171 Query: 222 RLLNVNRAAQRGSRVERPPR 281 R + V+ R + RP R Sbjct: 172 RRVLVDVERGRTVKGWRPRR 191
>RNA15_YEAST (P25299) mRNA 3'-end-processing protein RNA15| Length = 296 Score = 52.0 bits (123), Expect = 1e-06 Identities = 21/70 (30%), Positives = 43/70 (61%) Frame = +3 Query: 306 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 485 Y+G++P+ + +++ + S G V+N +++D +TGRS+G+ F+ E SA+ L+ Sbjct: 21 YLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLN 80 Query: 486 GQEMDGRPLR 515 G ++ R L+ Sbjct: 81 GYQLGSRFLK 90 Score = 45.8 bits (107), Expect = 1e-04 Identities = 18/67 (26%), Positives = 37/67 (55%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G++PYD E++ L G V +++++ ++G+S+G+ F+ +E + A+ N Y Sbjct: 23 GSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGY 82 Query: 210 DISGRLL 230 + R L Sbjct: 83 QLGSRFL 89
>ACF_RAT (Q923K9) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 594 Score = 51.6 bits (122), Expect = 2e-06 Identities = 41/143 (28%), Positives = 67/143 (46%), Gaps = 3/143 (2%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G LP D+ + L L ++ G + ++ + +G +RG+ FVT S +EA AI+ N Y Sbjct: 61 GKLPRDLFEDELIPLCEKIGKIYEMRMMMDF-NGNNRGYAFVTFSNKQEAKNAIKQLNNY 119 Query: 210 DI-SGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNA 386 +I +GRLL V + + R +VG +P + ++ + E V Sbjct: 120 EIRNGRLLGVCAS--------------VDNCRLFVGGIPKTKKREEILSEMKKVTEGVVD 165 Query: 387 TIVYD--RETGRSRGFGFVTMAS 449 IVY + ++RGF FV S Sbjct: 166 VIVYPSAADKTKNRGFAFVEYES 188 Score = 38.1 bits (87), Expect = 0.021 Identities = 21/72 (29%), Positives = 41/72 (56%), Gaps = 1/72 (1%) Frame = +3 Query: 306 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 485 ++G LP + L+ + + G++ ++ D G +RG+ FVT ++K++ +AI L+ Sbjct: 59 FIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKQEAKNAIKQLN 117 Query: 486 GQEM-DGRPLRV 518 E+ +GR L V Sbjct: 118 NYEIRNGRLLGV 129 Score = 37.4 bits (85), Expect = 0.036 Identities = 39/151 (25%), Positives = 64/151 (42%), Gaps = 4/151 (2%) Frame = +3 Query: 87 GVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF--NRYDISGRLLNVNRAAQRGS 260 GVV+V + ++RGF FV + A A R + G + V+ A Sbjct: 162 GVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPE-- 219 Query: 261 RVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFS--EHGEVVNATIVYDRETGRSRGFGF 434 VE +S YV NL + + + F+ + G V + R + F Sbjct: 220 -VEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNSIKPGAV--------ERVKKIRDYAF 270 Query: 435 VTMASKEDLDSAISALDGQEMDGRPLRVNVA 527 V +++ED A+ AL+G+ +DG P+ V +A Sbjct: 271 VHFSNREDAVEAMKALNGKVLDGSPIEVTLA 301
>YNR5_YEAST (P53883) Hypothetical 45.7 kDa protein in RPS3-PSD1 intergenic| region Length = 403 Score = 51.2 bits (121), Expect = 2e-06 Identities = 40/193 (20%), Positives = 84/193 (43%), Gaps = 21/193 (10%) Frame = +3 Query: 30 GNLPYDVDSERLAQLF--------DQAGVVEVAEVIY---------NRESGQSRGFGFVT 158 GNL +D + L + F D+ V ++ N + +++GF ++ Sbjct: 130 GNLSFDTTKDDLVRFFIAKTKDNEDEKSRVTEQDITRLSMPRVAAKNSNAMKNKGFCYMF 189 Query: 159 MSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFAS----SFRAYVGNLPW 326 +E+ KA+ + ++GR + + + R ++ S S +VGNL + Sbjct: 190 FKNVEQM-KAVLELSESHLNGRNMLIKDSENYSGRPDKDDLVAMSKNPPSRILFVGNLSF 248 Query: 327 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGR 506 D L + F G++V + ++G+ +GF F+ ++E + + +++ GR Sbjct: 249 DVTDDLLRKHFQHCGDIVKIRMATFEDSGKCKGFAFIDFKNEEGSTNELKDKSCRKIAGR 308 Query: 507 PLRVNVAAERPQR 545 PLR+ +R +R Sbjct: 309 PLRMEYGEDRSKR 321 Score = 38.9 bits (89), Expect = 0.012 Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 5/95 (5%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 GNL +DV + L + F G + + +SG+ +GF F+ E + ++ + Sbjct: 244 GNLSFDVTDDLLRKHFQHCGDIVKIRMATFEDSGKCKGFAFIDFKNEEGSTNELKDKSCR 303 Query: 210 DISGRLLNVNRAAQRGSR-----VERPPRQFASSF 299 I+GR L + R R VE R +SSF Sbjct: 304 KIAGRPLRMEYGEDRSKRQVRKKVENVSRNNSSSF 338
>SAFB1_HUMAN (Q15424) Scaffold attachment factor B (Scaffold attachment factor| B1) (SAF-B) (HSP27 estrogen response element-TATA box-binding protein) (HSP27 ERE-TATA-binding protein) Length = 915 Score = 51.2 bits (121), Expect = 2e-06 Identities = 46/186 (24%), Positives = 77/186 (41%), Gaps = 7/186 (3%) Frame = +3 Query: 3 EGRRPRCTSGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRG-------FGFVTM 161 +G R C L V+ A +A E+AE S ++R F F Sbjct: 303 DGERTDCEPVGLEPAVEQSSAASELAEASSEELAEAPTEAPSPEARDSKEDGRKFDFDAC 362 Query: 162 STIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDS 341 + + A K T D + +R S+ E+ +F +V L + Sbjct: 363 NEVPPAPKESSTSEGADQKMSSPEDDSDTKRLSKEEKGRSSCGRNF--WVSGLSSTTRAT 420 Query: 342 RLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVN 521 L +FS++G+VV A +V + + +R +GFVTM++ E+ I+ L E+ G+ + V Sbjct: 421 DLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLHKTELHGKMISVE 480 Query: 522 VAAERP 539 A P Sbjct: 481 KAKNEP 486
>SAFB1_RAT (O88453) Scaffold attachment factor B (Scaffold attachment factor| B1) (SAF-B) Length = 931 Score = 51.2 bits (121), Expect = 2e-06 Identities = 28/78 (35%), Positives = 44/78 (56%) Frame = +3 Query: 63 LAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYDISGRLLNVNR 242 L LF + G V A+V+ N S +R +GFVTMST EEA K I ++ ++ G++++V + Sbjct: 444 LKNLFSRYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLHKTELHGKMISVEK 503 Query: 243 AAQRGSRVERPPRQFASS 296 A + P R+ S Sbjct: 504 AKSEPAGKRVPDRRDGDS 521 Score = 45.8 bits (107), Expect = 1e-04 Identities = 34/132 (25%), Positives = 58/132 (43%) Frame = +3 Query: 144 FGFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLP 323 F F + + A K D + + +R SR E+ +F +V L Sbjct: 379 FAFDACNDVPAAPKESSASEGADQKMSSVEDDSDTKRLSREEKGRSSCGRNF--WVSGLS 436 Query: 324 WQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDG 503 + L +FS +G+VV A +V + + +R +GFVTM++ E+ I+ L E+ G Sbjct: 437 STTRATDLKNLFSRYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLHKTELHG 496 Query: 504 RPLRVNVAAERP 539 + + V A P Sbjct: 497 KMISVEKAKSEP 508
>RBM11_HUMAN (P57052) Putative RNA-binding protein 11 (RNA-binding motif protein| 11) Length = 281 Score = 50.8 bits (120), Expect = 3e-06 Identities = 28/81 (34%), Positives = 43/81 (53%) Frame = +3 Query: 276 PRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKE 455 P Q + +VGNL + + L ++F + G + TI DRE G+ + FGFV E Sbjct: 3 PAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPE 61 Query: 456 DLDSAISALDGQEMDGRPLRV 518 + AI+ L+G + GRP+ V Sbjct: 62 SVSYAIALLNGIRLYGRPINV 82 Score = 38.5 bits (88), Expect = 0.016 Identities = 26/69 (37%), Positives = 34/69 (49%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 GNL V E L +LF QAG + + +RE G+ + FGFV E AI N Sbjct: 15 GNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGI 73 Query: 210 DISGRLLNV 236 + GR +NV Sbjct: 74 RLYGRPINV 82
>RAVR2_HUMAN (Q9HCJ3) Protein raver-2| Length = 691 Score = 50.8 bits (120), Expect = 3e-06 Identities = 44/167 (26%), Positives = 71/167 (42%), Gaps = 1/167 (0%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 N+P SE +L G +E ++Y+ +G S+G+GFV + A KA R + Sbjct: 148 NVPISFTSEEFEELVRAYGNIERCFLVYSEVTGHSKGYGFVEYMKKDFAAKA-----RLE 202 Query: 213 ISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDS-RLVQMFSEHGEVVNAT 389 + GR L + + V + S + LP DS L+Q+FS + V Sbjct: 203 LLGRQLGASALFAQWMDVNLLASELIHSKCLCIDKLPSDYRDSEELLQIFSSVHKPVFCQ 262 Query: 390 IVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAA 530 + D E GF V ++ E + A DG + G ++V+ A Sbjct: 263 LAQD-EGSYVGGFAVVEYSTAEQAEEVQQAADGMTIKGSKVQVSFCA 308 Score = 41.2 bits (95), Expect = 0.003 Identities = 29/121 (23%), Positives = 49/121 (40%) Frame = +3 Query: 150 FVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQ 329 FVT+ E+A AI+ F++Y G+ L V + + N+P Sbjct: 107 FVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP--------------TDALLCITNVPIS 152 Query: 330 AEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRP 509 ++ +G + +VY TG S+G+GFV K+ A L G+++ Sbjct: 153 FTSEEFEELVRAYGNIERCFLVYSEVTGHSKGYGFVEYMKKDFAAKARLELLGRQLGASA 212 Query: 510 L 512 L Sbjct: 213 L 213
>IST3_YEAST (P40565) U2 snRNP component IST3 (U2 snRNP protein SNU17)| (Increased sodium tolerance protein 3) Length = 148 Score = 50.8 bits (120), Expect = 3e-06 Identities = 24/80 (30%), Positives = 45/80 (56%) Frame = +3 Query: 306 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 485 Y+GNL + + ++ +FSE+G V+ + D TG S+GF ++ + A+ L+ Sbjct: 34 YIGNLNRELTEGDILTVFSEYGVPVDVILSRDENTGESQGFAYLKYEDQRSTILAVDNLN 93 Query: 486 GQEMDGRPLRVNVAAERPQR 545 G ++ GR L+++ RP+R Sbjct: 94 GFKIGGRALKIDHTFYRPKR 113 Score = 34.3 bits (77), Expect = 0.31 Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 2/80 (2%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRE--SGQSRGFGFVTMSTIEEADKAIETFN 203 GNL ++ + +F + GV +VI +R+ +G+S+GF ++ A++ N Sbjct: 36 GNLNRELTEGDILTVFSEYGVP--VDVILSRDENTGESQGFAYLKYEDQRSTILAVDNLN 93 Query: 204 RYDISGRLLNVNRAAQRGSR 263 + I GR L ++ R R Sbjct: 94 GFKIGGRALKIDHTFYRPKR 113
>MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing protein 1| Length = 838 Score = 50.8 bits (120), Expect = 3e-06 Identities = 44/176 (25%), Positives = 81/176 (46%), Gaps = 9/176 (5%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIY-----NRESGQSRGFGFVTMSTIEEADKAIET 197 NL + S +LA+ F VA+V N + S GFGF+ T E+A I Sbjct: 618 NLNFSTTSAQLAEKFKPFSGFVVAQVKTKPDPKNSDKKLSMGFGFIEFRTKEQAGAVIAA 677 Query: 198 FNRYDISGRLLNVNRAAQRGS--RVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHG 371 + I G + + + ++ S + + ++ S + V NLP++A + ++FS G Sbjct: 678 MDGAVIDGHKIQLKISHKQSSLPKTSKGSKKKISG-KIIVKNLPFEATRKDVFELFSSFG 736 Query: 372 EVVNATIV--YDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAE 533 ++ + + +D+ +RGF FV + ++A+ L G + GR L + A + Sbjct: 737 QLKSVRVPKKFDKS---ARGFAFVEFLLPSEAENAMDQLQGVHLLGRRLVMQYAEQ 789 Score = 46.2 bits (108), Expect = 8e-05 Identities = 23/73 (31%), Positives = 37/73 (50%) Frame = +3 Query: 300 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 479 R ++ N+ + A + Q+FS +GE+ + D TG+S+GF +V E +A Sbjct: 302 RLFLRNILYDATEEDFKQLFSPYGELEEVHVAVDTRTGQSKGFAYVLFKDPEHAANAYIE 361 Query: 480 LDGQEMDGRPLRV 518 LD Q GR L + Sbjct: 362 LDKQIFQGRLLHI 374 Score = 43.5 bits (101), Expect = 5e-04 Identities = 23/68 (33%), Positives = 33/68 (48%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 N+ YD E QLF G +E V + +GQS+GF +V E A A ++ Sbjct: 307 NILYDATEEDFKQLFSPYGELEEVHVAVDTRTGQSKGFAYVLFKDPEHAANAYIELDKQI 366 Query: 213 ISGRLLNV 236 GRLL++ Sbjct: 367 FQGRLLHI 374 Score = 36.6 bits (83), Expect = 0.062 Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 5/79 (6%) Frame = +3 Query: 306 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVY-----DRETGRSRGFGFVTMASKEDLDSA 470 +V NL + ++L + F V A + + + S GFGF+ +KE + Sbjct: 615 FVKNLNFSTTSAQLAEKFKPFSGFVVAQVKTKPDPKNSDKKLSMGFGFIEFRTKEQAGAV 674 Query: 471 ISALDGQEMDGRPLRVNVA 527 I+A+DG +DG +++ ++ Sbjct: 675 IAAMDGAVIDGHKIQLKIS 693 Score = 33.9 bits (76), Expect = 0.40 Identities = 22/79 (27%), Positives = 36/79 (45%) Frame = +3 Query: 33 NLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYD 212 NLP++ + + +LF G ++ V + +RGF FV EA+ A++ Sbjct: 718 NLPFEATRKDVFELFSSFGQLKSVRVPKKFDKS-ARGFAFVEFLLPSEAENAMDQLQGVH 776 Query: 213 ISGRLLNVNRAAQRGSRVE 269 + GR L + A Q VE Sbjct: 777 LLGRRLVMQYAEQESDDVE 795
>SAFB2_HUMAN (Q14151) Scaffold attachment factor B2| Length = 953 Score = 50.4 bits (119), Expect = 4e-06 Identities = 26/61 (42%), Positives = 39/61 (63%) Frame = +3 Query: 63 LAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYDISGRLLNVNR 242 L LF + G V A+V+ N S +R +GFVTMST +EA K I +R ++ GR+++V + Sbjct: 423 LKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSDEATKCISHLHRTELHGRMISVEK 482 Query: 243 A 245 A Sbjct: 483 A 483 Score = 50.4 bits (119), Expect = 4e-06 Identities = 45/186 (24%), Positives = 74/186 (39%), Gaps = 7/186 (3%) Frame = +3 Query: 3 EGRRPRCTSGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRG-------FGFVTM 161 +G R C L V+ A +A E+AE S ++R F F Sbjct: 302 DGERTDCEPVGLEPAVEQSSAASELAEASSEELAEAPTEAPSPEARDSKEDGRKFDFDAC 361 Query: 162 STIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDS 341 + + A K T D + + + E+ S +V L + Sbjct: 362 NEVPPAPKESSTSEGADQKMSSFKEEKDIKPIIKDEKGRVGSGSGRNLWVSGLSSTTRAT 421 Query: 342 RLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVN 521 L +FS++G+VV A +V + + +R +GFVTM++ ++ IS L E+ GR + V Sbjct: 422 DLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSDEATKCISHLHRTELHGRMISVE 481 Query: 522 VAAERP 539 A P Sbjct: 482 KAKNEP 487
>TADBP_MOUSE (Q921F2) TAR DNA-binding protein 43 (TDP-43)| Length = 414 Score = 50.4 bits (119), Expect = 4e-06 Identities = 44/169 (26%), Positives = 73/169 (43%) Frame = +3 Query: 36 LPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYDI 215 LP+ + L F G V + +V + ++G S+GFGFV + E K + R+ I Sbjct: 111 LPWKTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMI 168 Query: 216 SGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIV 395 GR + + S P + S + +VG L Q F ++GEVV+ I Sbjct: 169 DGRWCDCKLPNSKQS-----PDEPLRSRKVFVGRCTEDMTAEELQQFFCQYGEVVDVFI- 222 Query: 396 YDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQ 542 R F FVT A D +L G+++ + + V+++ P+ Sbjct: 223 ----PKPFRAFAFVTFAD----DKVAQSLCGEDLIIKGISVHISNAEPK 263 Score = 42.0 bits (97), Expect = 0.001 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 3/79 (3%) Frame = +3 Query: 318 LPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS---ALDG 488 LPW+ + L FS GEV+ + D +TG S+GFGFV E +S +DG Sbjct: 111 LPWKTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDG 170 Query: 489 QEMDGRPLRVNVAAERPQR 545 + D + + + P R Sbjct: 171 RWCDCKLPNSKQSPDEPLR 189
>TADBP_HUMAN (Q13148) TAR DNA-binding protein 43 (TDP-43)| Length = 414 Score = 50.4 bits (119), Expect = 4e-06 Identities = 43/169 (25%), Positives = 78/169 (46%) Frame = +3 Query: 36 LPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRYDI 215 LP+ + L + F G V + +V + ++G S+GFGFV + E K + R+ I Sbjct: 111 LPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMI 168 Query: 216 SGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIV 395 GR + + S+ + P R S + +VG + L + FS++G+V++ I Sbjct: 169 DGRWCDCKLPNSKQSQ-DEPLR----SRKVFVGRCTEDMTEDELREFFSQYGDVMDVFI- 222 Query: 396 YDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQ 542 R F FVT A D +L G+++ + + V+++ P+ Sbjct: 223 ----PKPFRAFAFVTFAD----DQIAQSLCGEDLIIKGISVHISNAEPK 263 Score = 42.7 bits (99), Expect = 9e-04 Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 3/79 (3%) Frame = +3 Query: 318 LPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS---ALDG 488 LPW+ + L + FS GEV+ + D +TG S+GFGFV E +S +DG Sbjct: 111 LPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDG 170 Query: 489 QEMDGRPLRVNVAAERPQR 545 + D + + + P R Sbjct: 171 RWCDCKLPNSKQSQDEPLR 189
>ACF_HUMAN (Q9NQ94) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 594 Score = 50.1 bits (118), Expect = 5e-06 Identities = 41/143 (28%), Positives = 66/143 (46%), Gaps = 3/143 (2%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G LP D+ + L L ++ G + ++ + +G +RG+ FVT S EA AI+ N Y Sbjct: 61 GKLPRDLFEDELIPLCEKIGKIYEMRMMMDF-NGNNRGYAFVTFSNKVEAKNAIKQLNNY 119 Query: 210 DI-SGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNA 386 +I +GRLL V + + R +VG +P + ++ + E V Sbjct: 120 EIRNGRLLGVCAS--------------VDNCRLFVGGIPKTKKREEILSEMKKVTEGVVD 165 Query: 387 TIVYD--RETGRSRGFGFVTMAS 449 IVY + ++RGF FV S Sbjct: 166 VIVYPSAADKTKNRGFAFVEYES 188 Score = 37.0 bits (84), Expect = 0.047 Identities = 38/149 (25%), Positives = 62/149 (41%), Gaps = 2/149 (1%) Frame = +3 Query: 87 GVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF--NRYDISGRLLNVNRAAQRGS 260 GVV+V + ++RGF FV + A A R + G + V+ A Sbjct: 162 GVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPE-- 219 Query: 261 RVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVT 440 VE +S YV NL + + + F+ N + R + FV Sbjct: 220 -VEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFN------NIKPGAVERVKKIRDYAFVH 272 Query: 441 MASKEDLDSAISALDGQEMDGRPLRVNVA 527 +++ED A+ AL+G+ +DG P+ V +A Sbjct: 273 FSNREDAVEAMKALNGKVLDGSPIEVTLA 301 Score = 36.6 bits (83), Expect = 0.062 Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 1/72 (1%) Frame = +3 Query: 306 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 485 ++G LP + L+ + + G++ ++ D G +RG+ FVT ++K + +AI L+ Sbjct: 59 FIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKVEAKNAIKQLN 117 Query: 486 GQEM-DGRPLRV 518 E+ +GR L V Sbjct: 118 NYEIRNGRLLGV 129
>SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) Length = 699 Score = 50.1 bits (118), Expect = 5e-06 Identities = 43/148 (29%), Positives = 64/148 (43%) Frame = +3 Query: 9 RRPRCTSGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKA 188 +R R GNLP D+ + +LF + G E EV N+ +GFGF+ + + A+ A Sbjct: 287 QRCRLFVGNLPADITEDEFKRLFAKYG--EPGEVFINK----GKGFGFIKLESRALAEIA 340 Query: 189 IETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEH 368 + + GR L V A + R NL + L + FS+ Sbjct: 341 KAELDDTPMRGRQLRVRFATHAAALSVR--------------NLSPYVSNELLEEAFSQF 386 Query: 369 GEVVNATIVYDRETGRSRGFGFVTMASK 452 G + A ++ D + GRS G G V ASK Sbjct: 387 GPIERAVVIVD-DRGRSTGKGIVEFASK 413 Score = 44.7 bits (104), Expect = 2e-04 Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 1/91 (1%) Frame = +3 Query: 258 SRVERP-PRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGF 434 S + RP + + R +VGNLP + ++F+++GE I + +GFGF Sbjct: 275 SLLRRPGEKTYTQRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFI------NKGKGFGF 328 Query: 435 VTMASKEDLDSAISALDGQEMDGRPLRVNVA 527 + + S+ + A + LD M GR LRV A Sbjct: 329 IKLESRALAEIAKAELDDTPMRGRQLRVRFA 359
>SFPQ_HUMAN (P23246) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) (100-kDa DNA-pairing protein) (hPOMp Length = 707 Score = 50.1 bits (118), Expect = 5e-06 Identities = 43/148 (29%), Positives = 64/148 (43%) Frame = +3 Query: 9 RRPRCTSGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKA 188 +R R GNLP D+ + +LF + G E EV N+ +GFGF+ + + A+ A Sbjct: 295 QRCRLFVGNLPADITEDEFKRLFAKYG--EPGEVFINK----GKGFGFIKLESRALAEIA 348 Query: 189 IETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEH 368 + + GR L V A + R NL + L + FS+ Sbjct: 349 KAELDDTPMRGRQLRVRFATHAAALSVR--------------NLSPYVSNELLEEAFSQF 394 Query: 369 GEVVNATIVYDRETGRSRGFGFVTMASK 452 G + A ++ D + GRS G G V ASK Sbjct: 395 GPIERAVVIVD-DRGRSTGKGIVEFASK 421 Score = 44.7 bits (104), Expect = 2e-04 Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 1/91 (1%) Frame = +3 Query: 258 SRVERP-PRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGF 434 S + RP + + R +VGNLP + ++F+++GE I + +GFGF Sbjct: 283 SLLRRPGEKTYTQRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFI------NKGKGFGF 336 Query: 435 VTMASKEDLDSAISALDGQEMDGRPLRVNVA 527 + + S+ + A + LD M GR LRV A Sbjct: 337 IKLESRALAEIAKAELDDTPMRGRQLRVRFA 367
>ACF_PONPY (Q5R9H4) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 587 Score = 49.7 bits (117), Expect = 7e-06 Identities = 41/143 (28%), Positives = 66/143 (46%), Gaps = 3/143 (2%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G LP D+ + L L ++ G + ++ + +G +RG+ FVT S EA AI+ N Y Sbjct: 61 GKLPRDLFEDELIPLCEKIGKIYEMRMMMDF-NGNNRGYAFVTFSNKLEAKNAIKQLNNY 119 Query: 210 DI-SGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNA 386 +I +GRLL V + + R +VG +P + ++ + E V Sbjct: 120 EIRNGRLLGVCAS--------------VDNCRLFVGGIPKTKKREEILSEMKKVTEGVVD 165 Query: 387 TIVYD--RETGRSRGFGFVTMAS 449 IVY + ++RGF FV S Sbjct: 166 VIVYPSAADKTKNRGFAFVEYES 188 Score = 37.4 bits (85), Expect = 0.036 Identities = 38/149 (25%), Positives = 62/149 (41%), Gaps = 2/149 (1%) Frame = +3 Query: 87 GVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF--NRYDISGRLLNVNRAAQRGS 260 GVV+V + ++RGF FV + A A R + G + V+ A Sbjct: 162 GVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPE-- 219 Query: 261 RVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVT 440 VE +S YV NL + + + F+ N + R + FV Sbjct: 220 -VEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFN------NIKPGAVERVKKIRDYAFVH 272 Query: 441 MASKEDLDSAISALDGQEMDGRPLRVNVA 527 +++ED A+ AL+G+ +DG P+ V +A Sbjct: 273 FSNREDAVEAMKALNGKVLDGSPIEVTLA 301 Score = 36.2 bits (82), Expect = 0.081 Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 1/72 (1%) Frame = +3 Query: 306 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 485 ++G LP + L+ + + G++ ++ D G +RG+ FVT ++K + +AI L+ Sbjct: 59 FIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKLEAKNAIKQLN 117 Query: 486 GQEM-DGRPLRV 518 E+ +GR L V Sbjct: 118 NYEIRNGRLLGV 129
>U2AF2_DROME (Q24562) Splicing factor U2AF 50 kDa subunit (U2 auxiliary factor| 50 kDa subunit) (U2 snRNP auxiliary factor large subunit) Length = 416 Score = 49.7 bits (117), Expect = 7e-06 Identities = 42/195 (21%), Positives = 84/195 (43%), Gaps = 24/195 (12%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQ----AGVVEVA-EVIYNRESGQSRGFGFVTMSTIEEADKAIE 194 GN+P+ V E + + F+Q G+ + A + + + F F+ +I+E +A+ Sbjct: 98 GNIPFGVTEEEMMEFFNQQMHLVGLAQAAGSPVLACQINLDKNFAFLEFRSIDETTQAM- 156 Query: 195 TFNRYDISGRLLNVNRAAQRGSR---VERPPRQFA-------------SSFRAYVGNLPW 326 F+ ++ G+ L + R + P + A S + ++G LP Sbjct: 157 AFDGINLKGQSLKIRRPHDYQPMPGITDTPAIKPAVVSSGVISTVVPDSPHKIFIGGLPN 216 Query: 327 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGR 506 D ++ ++ G++ +V D TG S+G+ F D +I+ L+G ++ + Sbjct: 217 YLNDDQVKELLLSFGKLRAFNLVKDAATGLSKGYAFCEYVDLSITDQSIAGLNGMQLGDK 276 Query: 507 PL---RVNVAAERPQ 542 L R +V A+ Q Sbjct: 277 KLIVQRASVGAKNAQ 291 Score = 32.0 bits (71), Expect = 1.5 Identities = 22/93 (23%), Positives = 43/93 (46%), Gaps = 5/93 (5%) Frame = +3 Query: 255 GSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVN-----ATIVYDRETGRS 419 GS + R R R YVGN+P+ + +++ F++ +V + V + Sbjct: 85 GSTITRQAR------RLYVGNIPFGVTEEEMMEFFNQQMHLVGLAQAAGSPVLACQINLD 138 Query: 420 RGFGFVTMASKEDLDSAISALDGQEMDGRPLRV 518 + F F+ S ++ A+ A DG + G+ L++ Sbjct: 139 KNFAFLEFRSIDETTQAM-AFDGINLKGQSLKI 170
>SFRS1_ARATH (O22315) Pre-mRNA-splicing factor SF2 (SR1 protein)| Length = 303 Score = 49.3 bits (116), Expect = 9e-06 Identities = 28/79 (35%), Positives = 39/79 (49%) Frame = +3 Query: 291 SSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSA 470 SS YVGNLP + + +FS++G VV + + R G+ FV D + A Sbjct: 5 SSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDDARDAEDA 61 Query: 471 ISALDGQEMDGRPLRVNVA 527 I DG + DG LRV +A Sbjct: 62 IHGRDGYDFDGHRLRVELA 80
>NAM8_YEAST (Q00539) Protein NAM8| Length = 523 Score = 49.3 bits (116), Expect = 9e-06 Identities = 24/80 (30%), Positives = 48/80 (60%), Gaps = 1/80 (1%) Frame = +3 Query: 306 YVGNLPWQAEDSRLVQMF-SEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISAL 482 +VG+L +S+L ++F + + +A IV+D+ TG S+G+GFV + ++ A+S + Sbjct: 166 FVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSEM 225 Query: 483 DGQEMDGRPLRVNVAAERPQ 542 G ++GR ++V + + Q Sbjct: 226 QGVFLNGRAIKVGPTSGQQQ 245 Score = 35.4 bits (80), Expect = 0.14 Identities = 18/70 (25%), Positives = 39/70 (55%), Gaps = 1/70 (1%) Frame = +3 Query: 30 GNLPYDVDSERLAQLF-DQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNR 206 G+L +V +L +LF ++ A++++++ +G S+G+GFV + +E A+ Sbjct: 168 GDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSEMQG 227 Query: 207 YDISGRLLNV 236 ++GR + V Sbjct: 228 VFLNGRAIKV 237
>SFRS9_RAT (Q5PPI1) Splicing factor, arginine/serine-rich 9| Length = 221 Score = 48.9 bits (115), Expect = 1e-05 Identities = 52/179 (29%), Positives = 66/179 (36%), Gaps = 6/179 (3%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 GNLP DV + L LF + G + E + NR F FV +A+ AI N Y Sbjct: 19 GNLPTDVREKDLEDLFYKYGRIREIE-LKNRHGLVP--FAFVRFEDPRDAEDAIYGRNGY 75 Query: 210 DISGRLLNVNRAAQRGSRVERP------PRQFASSFRAYVGNLPWQAEDSRLVQMFSEHG 371 D L V G R P P S FR V LP L E G Sbjct: 76 DYGQCRLRVEFPRAYGGRGGWPRASRNGPPTRRSDFRVLVSGLPPSGSWQDLKDHMREAG 135 Query: 372 EVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQRG 548 +V A + D G G V KED++ A+ LD + + P+RG Sbjct: 136 DVCYADVQKD-------GMGMVEYLRKEDMEYALRKLDDTKFRSHEGETSYIRVYPERG 187 Score = 30.0 bits (66), Expect = 5.8 Identities = 22/83 (26%), Positives = 32/83 (38%) Frame = +3 Query: 300 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 479 R YVGNLP + L +F ++G + + + F FV D + AI Sbjct: 15 RIYVGNLPTDVREKDLEDLFYKYGRIREIEL---KNRHGLVPFAFVRFEDPRDAEDAIYG 71 Query: 480 LDGQEMDGRPLRVNVAAERPQRG 548 +G + LRV RG Sbjct: 72 RNGYDYGQCRLRVEFPRAYGGRG 94
>RU17_DROME (P17133) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) Length = 448 Score = 48.9 bits (115), Expect = 1e-05 Identities = 18/82 (21%), Positives = 47/82 (57%) Frame = +3 Query: 306 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 485 ++ + + +S+L + F +G + +++D+E+G+ +G+ F+ + D+ +A D Sbjct: 105 FIARINYDTSESKLRREFEFYGPIKKIVLIHDQESGKPKGYAFIEYEHERDMHAAYKHAD 164 Query: 486 GQEMDGRPLRVNVAAERPQRGF 551 G+++D + + V+V R +G+ Sbjct: 165 GKKIDSKRVLVDVERARTVKGW 186 Score = 30.0 bits (66), Expect = 5.8 Identities = 11/38 (28%), Positives = 24/38 (63%) Frame = +3 Query: 42 YDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFV 155 YD +L + F+ G ++ +I+++ESG+ +G+ F+ Sbjct: 111 YDTSESKLRREFEFYGPIKKIVLIHDQESGKPKGYAFI 148
>ACF_MOUSE (Q5YD48) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 595 Score = 48.9 bits (115), Expect = 1e-05 Identities = 40/143 (27%), Positives = 66/143 (46%), Gaps = 3/143 (2%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETFNRY 209 G LP D+ + L L ++ G + ++ + +G +RG+ FVT S +EA AI+ N Y Sbjct: 61 GKLPRDLFEDELIPLCEKIGKIYEMRLMMDF-NGNNRGYAFVTFSNKQEAKNAIKQLNNY 119 Query: 210 DI-SGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNA 386 +I +GRLL V + + R + G +P + ++ + E V Sbjct: 120 EIRTGRLLGVCAS--------------VDNCRLFRGGIPKTKKREEILSEMKKVTEGVVD 165 Query: 387 TIVYD--RETGRSRGFGFVTMAS 449 IVY + ++RGF FV S Sbjct: 166 VIVYPSAADKTKNRGFAFVEYES 188 Score = 37.7 bits (86), Expect = 0.028 Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 1/72 (1%) Frame = +3 Query: 306 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 485 ++G LP + L+ + + G++ ++ D G +RG+ FVT ++K++ +AI L+ Sbjct: 59 FIGKLPRDLFEDELIPLCEKIGKIYEMRLMMDFN-GNNRGYAFVTFSNKQEAKNAIKQLN 117 Query: 486 GQEM-DGRPLRV 518 E+ GR L V Sbjct: 118 NYEIRTGRLLGV 129 Score = 37.4 bits (85), Expect = 0.036 Identities = 39/151 (25%), Positives = 64/151 (42%), Gaps = 4/151 (2%) Frame = +3 Query: 87 GVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIETF--NRYDISGRLLNVNRAAQRGS 260 GVV+V + ++RGF FV + A A R + G + V+ A Sbjct: 162 GVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPE-- 219 Query: 261 RVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFS--EHGEVVNATIVYDRETGRSRGFGF 434 VE +S YV NL + + + F+ + G V + R + F Sbjct: 220 -VEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNSIKPGAV--------ERVKKIRDYAF 270 Query: 435 VTMASKEDLDSAISALDGQEMDGRPLRVNVA 527 V +++ED A+ AL+G+ +DG P+ V +A Sbjct: 271 VHFSNREDAVEAMKALNGKVLDGSPIEVTLA 301
>U2AF2_MOUSE (P26369) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) Length = 475 Score = 48.9 bits (115), Expect = 1e-05 Identities = 38/184 (20%), Positives = 78/184 (42%), Gaps = 17/184 (9%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQ----AGVVEV-AEVIYNRESGQSRGFGFVTMSTIEEADKAIE 194 GN+P+ + E + F+ G+ + + + Q + F F+ +++E +A+ Sbjct: 154 GNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM- 212 Query: 195 TFNRYDISGRLLNVNRAA--QRGSRVERPPRQFA----------SSFRAYVGNLPWQAED 338 F+ G+ L + R Q + P + S+ + ++G LP D Sbjct: 213 AFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLND 272 Query: 339 SRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRV 518 ++ ++ + G + +V D TG S+G+ F D AI+ L+G ++ + L V Sbjct: 273 DQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLV 332 Query: 519 NVAA 530 A+ Sbjct: 333 QRAS 336
>U2AF2_HUMAN (P26368) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (hU2AF(65)) Length = 475 Score = 48.9 bits (115), Expect = 1e-05 Identities = 38/184 (20%), Positives = 78/184 (42%), Gaps = 17/184 (9%) Frame = +3 Query: 30 GNLPYDVDSERLAQLFDQ----AGVVEV-AEVIYNRESGQSRGFGFVTMSTIEEADKAIE 194 GN+P+ + E + F+ G+ + + + Q + F F+ +++E +A+ Sbjct: 154 GNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM- 212 Query: 195 TFNRYDISGRLLNVNRAA--QRGSRVERPPRQFA----------SSFRAYVGNLPWQAED 338 F+ G+ L + R Q + P + S+ + ++G LP D Sbjct: 213 AFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLND 272 Query: 339 SRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRV 518 ++ ++ + G + +V D TG S+G+ F D AI+ L+G ++ + L V Sbjct: 273 DQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLV 332 Query: 519 NVAA 530 A+ Sbjct: 333 QRAS 336 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 86,042,211 Number of Sequences: 219361 Number of extensions: 1752168 Number of successful extensions: 6745 Number of sequences better than 10.0: 455 Number of HSP's better than 10.0 without gapping: 5657 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6408 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5710231900 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
