ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags37n09 |
|---|---|
| Clone Library Name | barley_pub |
>CUL2_PONPY (Q5RCF3) Cullin-2 (CUL-2)| Length = 745 Score = 36.2 bits (82), Expect = 0.082 Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 1/86 (1%) Frame = -3 Query: 301 VPGVLELDVGGRQALQDRCLRLFVGLDEFPKNVHRLLHDHLQLLARYHVVPL-ALVLHSV 125 + V+ L+ R DR ++ +P+ + L+ ++ HV L VL S Sbjct: 21 IKAVVMLEYVERATWNDRFSDIYALCVAYPEPLGERLYTETKIFLENHVRHLHKRVLESE 80 Query: 124 LQAILSYHRHLQEVAKGASFFDVVWQ 47 Q ++ YHR+ +E +KGA + D +++ Sbjct: 81 EQVLVMYHRYWEEYSKGADYMDCLYR 106
>CUL2_HUMAN (Q13617) Cullin-2 (CUL-2)| Length = 745 Score = 36.2 bits (82), Expect = 0.082 Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 1/86 (1%) Frame = -3 Query: 301 VPGVLELDVGGRQALQDRCLRLFVGLDEFPKNVHRLLHDHLQLLARYHVVPL-ALVLHSV 125 + V+ L+ R DR ++ +P+ + L+ ++ HV L VL S Sbjct: 21 IKAVVMLEYVERATWNDRFSDIYALCVAYPEPLGERLYTETKIFLENHVRHLHKRVLESE 80 Query: 124 LQAILSYHRHLQEVAKGASFFDVVWQ 47 Q ++ YHR+ +E +KGA + D +++ Sbjct: 81 EQVLVMYHRYWEEYSKGADYMDCLYR 106
>CUL2_MOUSE (Q9D4H8) Cullin-2 (CUL-2)| Length = 745 Score = 35.8 bits (81), Expect = 0.11 Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 1/86 (1%) Frame = -3 Query: 301 VPGVLELDVGGRQALQDRCLRLFVGLDEFPKNVHRLLHDHLQLLARYHVVPL-ALVLHSV 125 + V+ L+ R DR ++ +P+ + L+ ++ HV L VL S Sbjct: 21 IKAVVMLEYVERATWNDRFSDIYALCVAYPEPLGERLYAETKIFLESHVRHLYKRVLESE 80 Query: 124 LQAILSYHRHLQEVAKGASFFDVVWQ 47 Q ++ YHR+ +E +KGA + D +++ Sbjct: 81 EQVLVMYHRYWEEYSKGADYMDCLYR 106
>ZFP90_RAT (Q4V8A8) Zinc finger protein 90 (Zfp-90)| Length = 633 Score = 30.4 bits (67), Expect = 4.5 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 4/48 (8%) Frame = -1 Query: 336 CNVAWMPFTRASSLGSWSSTWAVDRPFRTDVCGSL----SALMNSQRM 205 CNV F +SSLG + ++P++ +CG S+L+ QR+ Sbjct: 281 CNVCGKAFRHSSSLGQHENAHTGEKPYQCSLCGKAFQRSSSLVQHQRI 328
>KRUC_SHEEP (P26372) Keratin, ultra high-sulfur matrix protein (UHS keratin)| Length = 182 Score = 30.4 bits (67), Expect = 4.5 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%) Frame = -2 Query: 602 CAPSRGRAKTKPPCGSSCCLPA*SC-PASPCTT 507 C S+G + CGSSCC P C PA C++ Sbjct: 69 CGGSKGGCGSCGGCGSSCCKPVCCCVPACSCSS 101
>ZFP90_MOUSE (Q61967) Zinc finger protein 90 (Zfp-90) (Zinc finger protein NK10)| Length = 636 Score = 30.4 bits (67), Expect = 4.5 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 4/48 (8%) Frame = -1 Query: 336 CNVAWMPFTRASSLGSWSSTWAVDRPFRTDVCGSL----SALMNSQRM 205 CNV F +SSLG + ++P++ +CG S+L+ QR+ Sbjct: 280 CNVCGKAFRHSSSLGQHENAHTGEKPYQCSLCGKAFQRSSSLVQHQRI 327
>ZFP90_HUMAN (Q8TF47) Zinc finger protein 90 homolog (Zfp-90)| Length = 636 Score = 30.4 bits (67), Expect = 4.5 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 4/48 (8%) Frame = -1 Query: 336 CNVAWMPFTRASSLGSWSSTWAVDRPFRTDVCGSL----SALMNSQRM 205 CNV F +SSLG + ++P++ +CG S+L+ QR+ Sbjct: 284 CNVCGKAFRHSSSLGQHENAHTGEKPYQCSLCGKAFQRSSSLVQHQRI 331
>RUVC_XANOR (Q5H2A7) Crossover junction endodeoxyribonuclease ruvC (EC| 3.1.22.4) (Holliday junction nuclease ruvC) (Holliday juction resolvase ruvC) Length = 174 Score = 30.0 bits (66), Expect = 5.9 Identities = 16/63 (25%), Positives = 31/63 (49%) Frame = -3 Query: 328 GVDALHKSLVPGVLELDVGGRQALQDRCLRLFVGLDEFPKNVHRLLHDHLQLLARYHVVP 149 G+D + G++++D GGR + +G +F + + RLLH +L+ Y Sbjct: 6 GIDPGSQRTGIGIIDIDEGGRSRHVHHAPLILLGEGDFSQRLKRLLHGLGELIETYRPDE 65 Query: 148 LAL 140 +A+ Sbjct: 66 VAI 68
>ZN225_HUMAN (Q9UK10) Zinc finger protein 225| Length = 706 Score = 30.0 bits (66), Expect = 5.9 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 3/47 (6%) Frame = -1 Query: 336 CNVAWMPFTRASSLGSWSSTWAVDRPFRTDVCG---SLSALMNSQRM 205 C++ F ++L S ++PFR D CG L + +NS RM Sbjct: 290 CDICCKSFRSRANLNRHSMVHMREKPFRCDTCGKSFGLKSALNSHRM 336
>DYHC_FUSSO (P78716) Dynein heavy chain, cytosolic (DYHC)| Length = 4349 Score = 30.0 bits (66), Expect = 5.9 Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 2/95 (2%) Frame = -3 Query: 325 VDALHKSLVPGVLELDVGGRQALQDRCLRLFVGLDEFPKNVHRLLHDHLQLLARYHVVPL 146 V ++ +++ P +++ DV ++ C F G+ P N+ L + +L A H+V Sbjct: 2159 VQSIRETIAPKLIKSDVDIMATIETDC---FPGVQYVPANLEALENAIRELAAERHLVVN 2215 Query: 145 ALVLHSVLQ--AILSYHRHLQEVAKGASFFDVVWQ 47 L + VLQ I H + V S W+ Sbjct: 2216 ELWMTKVLQLYQIQKIHHGVMMVGNSGSGKSAAWR 2250
>YICN_ECOLI (P0ADL3) Hypothetical protein yicN| Length = 159 Score = 30.0 bits (66), Expect = 5.9 Identities = 17/55 (30%), Positives = 28/55 (50%) Frame = -3 Query: 223 DEFPKNVHRLLHDHLQLLARYHVVPLALVLHSVLQAILSYHRHLQEVAKGASFFD 59 DEF + +HR HLQ A+ ++ +++ Q +L +HR LQ+ A D Sbjct: 64 DEFLRYLHRPDESHLQNAAQVLLIWQIVIVDGSEQNLLQWHRILQKARLAAPITD 118
>YICN_ECOL6 (P0ADL4) Hypothetical protein yicN| Length = 159 Score = 30.0 bits (66), Expect = 5.9 Identities = 17/55 (30%), Positives = 28/55 (50%) Frame = -3 Query: 223 DEFPKNVHRLLHDHLQLLARYHVVPLALVLHSVLQAILSYHRHLQEVAKGASFFD 59 DEF + +HR HLQ A+ ++ +++ Q +L +HR LQ+ A D Sbjct: 64 DEFLRYLHRPDESHLQNAAQVLLIWQIVIVDGSEQNLLQWHRILQKARLAAPITD 118
>YICN_ECO57 (P0ADL5) Hypothetical protein yicN| Length = 159 Score = 30.0 bits (66), Expect = 5.9 Identities = 17/55 (30%), Positives = 28/55 (50%) Frame = -3 Query: 223 DEFPKNVHRLLHDHLQLLARYHVVPLALVLHSVLQAILSYHRHLQEVAKGASFFD 59 DEF + +HR HLQ A+ ++ +++ Q +L +HR LQ+ A D Sbjct: 64 DEFLRYLHRPDESHLQNAAQVLLIWQIVIVDGSEQNLLQWHRILQKARLAAPITD 118
>Y257_AQUAE (O66617) Hypothetical RNA methyltransferase aq_257 (EC 2.1.1.-)| Length = 425 Score = 30.0 bits (66), Expect = 5.9 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 15/69 (21%) Frame = +2 Query: 251 VLKGLSTAHVELQDPRDEALVKGIHATLQKKEKRLKDLL---------------RTGNCI 385 V+K L HV RDEA +K + T EK L+++L + GN + Sbjct: 173 VIKDLQEVHVNYSPTRDEATLKFVTIT-HTDEKLLQNILENVLPEWVVGIGDYGKVGNSL 231 Query: 386 VKKFKKPKE 412 VK++K +E Sbjct: 232 VKRYKVGRE 240
>HPPD_COCIM (Q00415) 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)| (4HPPD) (HPD) (HPPDase) (T-cell reactive protein) Length = 399 Score = 30.0 bits (66), Expect = 5.9 Identities = 14/35 (40%), Positives = 21/35 (60%) Frame = +2 Query: 293 PRDEALVKGIHATLQKKEKRLKDLLRTGNCIVKKF 397 P DEAL+K IHA L++ +KD+ +C+ F Sbjct: 90 PEDEALLKEIHAHLERHGDGVKDVAFEVDCVESVF 124
>GAS8_HUMAN (O95995) Growth-arrest-specific protein 8 (Growth arrest-specific| 11) Length = 478 Score = 29.6 bits (65), Expect = 7.7 Identities = 25/104 (24%), Positives = 48/104 (46%) Frame = +2 Query: 113 DSLKDRMEDQRKGNYVITXXXXXXXXXXXXHILWEFIKADKEPQTSVLKGLSTAHVELQD 292 +SLK++MED RK + L + ++ +E + + K L+ Sbjct: 249 NSLKEQMEDMRKKEDHLEREMAEVSGQNKR--LADPLQKAREEMSEMQKQLANYE----- 301 Query: 293 PRDEALVKGIHATLQKKEKRLKDLLRTGNCIVKKFKKPKEDRSD 424 RD+ ++ A L+ +EK LKDL + ++F K +++R + Sbjct: 302 -RDKQILLCTKARLKVREKELKDLQWEHEVLEQRFTKVQQERDE 344
>RAD50_ARCFU (O29230) DNA double-strand break repair rad50 ATPase| Length = 886 Score = 29.6 bits (65), Expect = 7.7 Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 8/92 (8%) Frame = +2 Query: 302 EALVKGIHATLQKKEKRLKDLLRTGNCIVKKFKKPKEDRSDQNLFFSQVD--------MR 457 E L+ I+ L+ EKR DL R I + KK +ED S +++ Sbjct: 293 EKLLSEINQALRDVEKREGDLTREAAGIQAQLKKAEEDNSKLEEITKRIEELERELERFE 352 Query: 458 LVARVLRMPRITGDQLQWCKAKLDKIMLVDNR 553 R+L + D++Q KAKL++ L ++ Sbjct: 353 KSHRLLETLKPKMDRMQGIKAKLEEKNLTPDK 384
>ZFP60_MOUSE (P16374) Zinc finger protein 60 (Zfp-60) (Zinc finger protein| Mfg-3) Length = 707 Score = 29.6 bits (65), Expect = 7.7 Identities = 14/33 (42%), Positives = 16/33 (48%) Frame = -1 Query: 336 CNVAWMPFTRASSLGSWSSTWAVDRPFRTDVCG 238 CNV F R S+L + DRPF VCG Sbjct: 290 CNVCGKAFNRRSNLLQHQKIHSEDRPFHCKVCG 322
>RRF_THETN (Q8RA24) Ribosome recycling factor (Ribosome-releasing factor)| (RRF) Length = 184 Score = 29.6 bits (65), Expect = 7.7 Identities = 15/49 (30%), Positives = 26/49 (53%) Frame = +2 Query: 281 ELQDPRDEALVKGIHATLQKKEKRLKDLLRTGNCIVKKFKKPKEDRSDQ 427 EL + R + LVK +H ++ ++ + R N +VKK +K E D+ Sbjct: 103 ELTEERRKELVKLVHKKAEEARIAVRQIRRDANDLVKKMEKDGEISEDE 151 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 77,930,397 Number of Sequences: 219361 Number of extensions: 1413198 Number of successful extensions: 5998 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 5259 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5991 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5824436538 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
