Clone Information

BLAST Search Result

Clone Name	bags37n09
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AK065194.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	307	2e-80
2	dbj\|AP008215.1\| Oryza sativa (japonica cultivar-group) genomic D...	283	3e-73
3	dbj\|AP005397.2\| Oryza sativa (japonica cultivar-group) genomic D...	283	3e-73
4	gb\|AC157320.2\| Zea mays clone ZMMBBb-7C14, complete sequence	272	1e-69
5	emb\|Z75540.1\|CEF37D6 Caenorhabditis elegans Cosmid F37D6, comple...	44	0.55
6	emb\|AJ286830.1\|EEU286830 Erinaceus europaeus partial tnfa gene f...	44	0.55
7	ref\|NM_060343.1\| Caenorhabditis elegans F37D6.3 (F37D6.3) mRNA, ...	44	0.55
8	gb\|CP000031.1\| Silicibacter pomeroyi DSS-3, complete genome	42	2.2
9	gb\|AC142270.4\| Mus musculus BAC clone RP24-115G23 from chromosom...	42	2.2
10	gb\|AC109805.8\| Mus musculus chromosome 3, clone RP23-91D14, comp...	42	2.2
11	gb\|AC165165.3\| Mus musculus BAC clone RP23-121B15 from chromosom...	42	2.2
12	gb\|AC120241.5\| Rattus norvegicus X BAC CH230-390I1 (Children's H...	42	2.2
13	emb\|AL669954.6\| Mouse DNA sequence from clone RP23-456O18 on chr...	42	2.2
14	emb\|BX537141.17\| Zebrafish DNA sequence from clone DKEY-9E8 in l...	42	2.2
15	gb\|AC096624.23\| Mus musculus strain C57BL/6J chromosome 11 clone...	42	2.2
16	ref\|XM_469819.1\| Oryza sativa (japonica cultivar-group), mRNA	40	8.6
17	gb\|BT017037.1\| Zea mays clone EL01N0202E08.c mRNA sequence	40	8.6
18	gb\|AY441151.1\| Armigeres subalbatus ASAP ID: 40687 conserved unk...	40	8.6
19	gb\|AC136786.4\| Oryza sativa (japonica cultivar-group) chromosome...	40	8.6
20	ref\|XM_756405.1\| Ustilago maydis 521 hypothetical protein (UM053...	40	8.6
21	gb\|AY040221.1\| Lactobacillus delbrueckii subsp. bulgaricus ATP-b...	40	8.6
22	gb\|AC144722.11\| Medicago truncatula clone mth2-26h11, complete s...	40	8.6
23	gb\|AC137996.33\| Medicago truncatula clone mth2-19k16, complete s...	40	8.6
24	gb\|CP000316.1\| Polaromonas sp. JS666, complete genome	40	8.6
25	gb\|AC091520.10\| Mus musculus strain 129/SvJ clone mgs1-480e13, c...	40	8.6
26	emb\|AL356476.13\| Human DNA sequence from clone RP11-655H13 on ch...	40	8.6
27	ref\|XM_690503.1\| PREDICTED: Danio rerio similar to sodium-calciu...	40	8.6
28	gb\|CP000249.1\| Frankia sp. CcI3, complete genome	40	8.6
29	emb\|AJ632075.1\| Takifugu rubripes fmo gene for putative flavin-m...	40	8.6
30	dbj\|AP008217.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.6
31	gb\|AC023399.4\|AC023399 Homo sapiens chromosome 17, clone RP11-78...	40	8.6
32	gb\|AC005177.1\|AC005177 Homo sapiens chromosome 17, clone HCIT462...	40	8.6
33	dbj\|BA000045.2\| Gloeobacter violaceus PCC 7421 DNA, complete genome	40	8.6
34	emb\|BX004812.8\| Zebrafish DNA sequence from clone CH211-201M7 in...	40	8.6
35	dbj\|AK073686.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	8.6
36	emb\|BX890602.8\| Zebrafish DNA sequence from clone DKEYP-109H9 in...	40	8.6
37	gb\|DP000010.1\| Oryza sativa (japonica cultivar-group) chromosome...	40	8.6
38	gb\|AC147644.3\| Gallus gallus BAC clone CH261-77K20 from chromoso...	40	8.6
39	gb\|AC160111.2\| Mus musculus BAC clone RP24-144L16 from chromosom...	40	8.6

>dbj|AK065194.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002E13, full
            insert sequence
          Length = 4021

 Score =  307 bits (155), Expect = 2e-80
 Identities = 238/265 (89%), Gaps = 3/265 (1%)
 Strand = Plus / Plus

                                                                        
Query: 327  ccacgttacagaagaaagagaagaggctgaaggatctgctgaggacagggaactgcattg 386
            ||||||||||||||||||||||||||||||||||||| |||||||| || |||||||| |
Sbjct: 3469 ccacgttacagaagaaagagaagaggctgaaggatctcctgaggaccggcaactgcatag 3528

                                                                        
Query: 387  tgaagaagttcaagaagcccaaggaggacaggtcggaccagaacctcttcttctcgcagg 446
            ||||||||||||||||||||||||||||||  | | |||||| |||||||||||||||||
Sbjct: 3529 tgaagaagttcaagaagcccaaggaggacaccttgaaccagagcctcttcttctcgcagg 3588

                                                                        
Query: 447  tggacatgcggctggtggcgcgggtgctgaggatgccgaggatcaccggcgaccagctgc 506
            | ||||||||||| ||||| ||||| ||| ||||||||||||||||| |||| |||||||
Sbjct: 3589 tcgacatgcggctcgtggcacgggtcctgcggatgccgaggatcaccagcgagcagctgc 3648

                                                                        
Query: 507  agtggtgcaaggcgaagctggacaagatcatgctggtagacaacaggaggatccacaggg 566
            |||||||||||||||||||||||||||||   || ||||   | ||||||||||||||||
Sbjct: 3649 agtggtgcaaggcgaagctggacaagatcgcacttgtag---ataggaggatccacaggg 3705

                                     
Query: 567  aggcttcgtttttgctcttcccctg 591
            ||||||| |||||| | ||||||||
Sbjct: 3706 aggcttcatttttgttgttcccctg 3730



 Score =  105 bits (53), Expect = 2e-19
 Identities = 95/109 (87%)
 Strand = Plus / Plus

                                                                        
Query: 87   tcttgcaagtgccggtgataagagaggatagcctgaaggaccgaatggaggaccagcgca 146
            |||||||||| || || |||| |||||| ||| |||||||| | |||||||| ||||| |
Sbjct: 3229 tcttgcaagtaccagtaataaaagaggacagcttgaaggacaggatggaggatcagcgta 3288

                                                             
Query: 147  aggggaactacgtgataacgagcgaggagctggaggtggtcatggagga 195
            |||||||||| || |||||||||||||||||||||| | ||||||||||
Sbjct: 3289 aggggaactatgtcataacgagcgaggagctggaggagatcatggagga 3337

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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  283 bits (143), Expect = 3e-73
 Identities = 226/253 (89%), Gaps = 3/253 (1%)
 Strand = Plus / Minus

                                                                            
Query: 339      agaaagagaagaggctgaaggatctgctgaggacagggaactgcattgtgaagaagttca 398
                ||||||||||||||||||||||||| |||||||| || |||||||| |||||||||||||
Sbjct: 14640350 agaaagagaagaggctgaaggatctcctgaggaccggcaactgcatagtgaagaagttca 14640291

                                                                            
Query: 399      agaagcccaaggaggacaggtcggaccagaacctcttcttctcgcaggtggacatgcggc 458
                ||||||||||||||||||  | | |||||| |||||||||||||||||| ||||||||||
Sbjct: 14640290 agaagcccaaggaggacaccttgaaccagagcctcttcttctcgcaggtcgacatgcggc 14640231

                                                                            
Query: 459      tggtggcgcgggtgctgaggatgccgaggatcaccggcgaccagctgcagtggtgcaagg 518
                | ||||| ||||| ||| ||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 14640230 tcgtggcacgggtcctgcggatgccgaggatcaccagcgagcagctgcagtggtgcaagg 14640171

                                                                            
Query: 519      cgaagctggacaagatcatgctggtagacaacaggaggatccacagggaggcttcgtttt 578
                |||||||||||||||||   || ||||   | ||||||||||||||||||||||| ||||
Sbjct: 14640170 cgaagctggacaagatcgcacttgtag---ataggaggatccacagggaggcttcatttt 14640114

                             
Query: 579      tgctcttcccctg 591
                || | ||||||||
Sbjct: 14640113 tgttgttcccctg 14640101



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 77/87 (88%)
 Strand = Plus / Minus

                                                                            
Query: 109      agaggatagcctgaaggaccgaatggaggaccagcgcaaggggaactacgtgataacgag 168
                |||||| ||| |||||||| | |||||||| ||||| ||||||||||| || ||||||||
Sbjct: 14640703 agaggacagcttgaaggacaggatggaggatcagcgtaaggggaactatgtcataacgag 14640644

                                           
Query: 169      cgaggagctggaggtggtcatggagga 195
                |||||||||||||| | ||||||||||
Sbjct: 14640643 cgaggagctggaggagatcatggagga 14640617



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                                    
Query: 12       ggtttgtggaagacgagccgttcaagggccctcggctgccagactacgtcaa 63
                |||||||||| || ||| | |||||||||||| || ||||| ||||| ||||
Sbjct: 14640903 ggtttgtggaggatgagtccttcaagggccctaggttgccaaactacatcaa 14640852

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>dbj|AP005397.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0643D11
          Length = 137525

 Score =  283 bits (143), Expect = 3e-73
 Identities = 226/253 (89%), Gaps = 3/253 (1%)
 Strand = Plus / Minus

                                                                         
Query: 339   agaaagagaagaggctgaaggatctgctgaggacagggaactgcattgtgaagaagttca 398
             ||||||||||||||||||||||||| |||||||| || |||||||| |||||||||||||
Sbjct: 62017 agaaagagaagaggctgaaggatctcctgaggaccggcaactgcatagtgaagaagttca 61958

                                                                         
Query: 399   agaagcccaaggaggacaggtcggaccagaacctcttcttctcgcaggtggacatgcggc 458
             ||||||||||||||||||  | | |||||| |||||||||||||||||| ||||||||||
Sbjct: 61957 agaagcccaaggaggacaccttgaaccagagcctcttcttctcgcaggtcgacatgcggc 61898

                                                                         
Query: 459   tggtggcgcgggtgctgaggatgccgaggatcaccggcgaccagctgcagtggtgcaagg 518
             | ||||| ||||| ||| ||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 61897 tcgtggcacgggtcctgcggatgccgaggatcaccagcgagcagctgcagtggtgcaagg 61838

                                                                         
Query: 519   cgaagctggacaagatcatgctggtagacaacaggaggatccacagggaggcttcgtttt 578
             |||||||||||||||||   || ||||   | ||||||||||||||||||||||| ||||
Sbjct: 61837 cgaagctggacaagatcgcacttgtag---ataggaggatccacagggaggcttcatttt 61781

                          
Query: 579   tgctcttcccctg 591
             || | ||||||||
Sbjct: 61780 tgttgttcccctg 61768



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 77/87 (88%)
 Strand = Plus / Minus

                                                                         
Query: 109   agaggatagcctgaaggaccgaatggaggaccagcgcaaggggaactacgtgataacgag 168
             |||||| ||| |||||||| | |||||||| ||||| ||||||||||| || ||||||||
Sbjct: 62370 agaggacagcttgaaggacaggatggaggatcagcgtaaggggaactatgtcataacgag 62311

                                        
Query: 169   cgaggagctggaggtggtcatggagga 195
             |||||||||||||| | ||||||||||
Sbjct: 62310 cgaggagctggaggagatcatggagga 62284



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                                 
Query: 12    ggtttgtggaagacgagccgttcaagggccctcggctgccagactacgtcaa 63
             |||||||||| || ||| | |||||||||||| || ||||| ||||| ||||
Sbjct: 62570 ggtttgtggaggatgagtccttcaagggccctaggttgccaaactacatcaa 62519

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>gb|AC157320.2| Zea mays clone ZMMBBb-7C14, complete sequence
          Length = 132140

 Score =  272 bits (137), Expect = 1e-69
 Identities = 226/255 (88%), Gaps = 3/255 (1%)
 Strand = Plus / Minus

                                                                         
Query: 339   agaaagagaagaggctgaaggatctgctgaggacagggaactgcattgtgaagaagttca 398
             |||||||||||||||| ||||| ||||| ||||| || |||||||| | ||||||||| |
Sbjct: 70299 agaaagagaagaggctcaaggacctgctcaggacgggcaactgcatcgcgaagaagttta 70240

                                                                         
Query: 399   agaagcccaaggaggacaggtcggaccagaacctcttcttctcgcaggtggacatgcggc 458
             ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||  ||
Sbjct: 70239 agaagcccaaggaggacaggtccaaccagaacctcttcttctcgcaggtggacatgaagc 70180

                                                                         
Query: 459   tggtggcgcgggtgctgaggatgccgaggatcaccggcgaccagctgcagtggtgcaagg 518
             ||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||| ||
Sbjct: 70179 tggtggcgcgggtgctgaggatgcccaggatcaccagcgagcagctgcagtggtgcaggg 70120

                                                                         
Query: 519   cgaagctggacaagatcatgctggtagacaacaggaggatccacagggaggcttcgtttt 578
             | ||||| ||||||||| | |||||||   | |||| |||||||||||||||||| ||||
Sbjct: 70119 ccaagctcgacaagatcgtactggtag---ataggaagatccacagggaggcttcatttt 70063

                            
Query: 579   tgctcttcccctgct 593
             || | || |||||||
Sbjct: 70062 tgttgtttccctgct 70048



 Score =  153 bits (77), Expect = 8e-34
 Identities = 113/125 (90%)
 Strand = Plus / Minus

                                                                         
Query: 109   agaggatagcctgaaggaccgaatggaggaccagcgcaaggggaactacgtgataacgag 168
             |||||| |||||||||||| | ||||||||||||||||||||||||||||||||||| ||
Sbjct: 70621 agaggacagcctgaaggacaggatggaggaccagcgcaaggggaactacgtgataaccag 70562

                                                                         
Query: 169   cgaggagctggaggtggtcatggaggagtcgatgcacattctttgggaattcatcaaggc 228
             ||||||||||||||  |||||||| ||| |||||||| | || ||||| |||||||||||
Sbjct: 70561 cgaggagctggaggacgtcatggaagaggcgatgcacgtcctgtgggagttcatcaaggc 70502

                  
Query: 229   cgaca 233
             |||||
Sbjct: 70501 cgaca 70497



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                              
Query: 246   catcggtcctgaagggcctgtctaccgcccacgtcgagctccaggaccc 294
             ||||||| || ||||||||||| | |  | |||||||||||||||||||
Sbjct: 70466 catcggtgctcaagggcctgtcgagcagcaacgtcgagctccaggaccc 70418

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>emb|Z75540.1|CEF37D6 Caenorhabditis elegans Cosmid F37D6, complete sequence
          Length = 29363

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 514   caaggcgaagctggacaagatc 535
             ||||||||||||||||||||||
Sbjct: 11324 caaggcgaagctggacaagatc 11345

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>emb|AJ286830.1|EEU286830 Erinaceus europaeus partial tnfa gene for tumor necrosis factor
           precursor, exon 1
          Length = 646

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 337 gaagaaagagaagaggctgaag 358
           ||||||||||||||||||||||
Sbjct: 91  gaagaaagagaagaggctgaag 70

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>ref|NM_060343.1| Caenorhabditis elegans F37D6.3 (F37D6.3) mRNA, complete cds
          Length = 510

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 514 caaggcgaagctggacaagatc 535
           ||||||||||||||||||||||
Sbjct: 226 caaggcgaagctggacaagatc 247

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>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 454    gcggctggtggcgcgggtgct 474
              |||||||||||||||||||||
Sbjct: 549409 gcggctggtggcgcgggtgct 549429

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>gb|AC142270.4| Mus musculus BAC clone RP24-115G23 from chromosome 3, complete sequence
          Length = 170870

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 353   ctgaaggatctgctgaggacaggga 377
             |||||||||||||||||| ||||||
Sbjct: 56216 ctgaaggatctgctgagggcaggga 56240

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>gb|AC109805.8| Mus musculus chromosome 3, clone RP23-91D14, complete sequence
          Length = 171006

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 353   ctgaaggatctgctgaggacaggga 377
             |||||||||||||||||| ||||||
Sbjct: 54334 ctgaaggatctgctgagggcaggga 54358

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>gb|AC165165.3| Mus musculus BAC clone RP23-121B15 from chromosome 3, complete
            sequence
          Length = 228648

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 353  ctgaaggatctgctgaggacaggga 377
            |||||||||||||||||| ||||||
Sbjct: 9574 ctgaaggatctgctgagggcaggga 9550

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>gb|AC120241.5| Rattus norvegicus X BAC CH230-390I1 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 174991

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 607   ataaatcatgtctgatttttt 627
             |||||||||||||||||||||
Sbjct: 87873 ataaatcatgtctgatttttt 87853

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>emb|AL669954.6| Mouse DNA sequence from clone RP23-456O18 on chromosome 11 Contains the
             3' end of the Rai1 gene for retinoic acid induced 1, the
             Srebf1 gene for sterol regulatory element binding factor
             1, the 3' end of the gene for the likely ortholog of H.
             sapiens target of myb1-like 2 (chicken) (TOM1L2)
             (A730055F12Rik), a novel gene and two CpG islands,
             complete sequence
          Length = 119279

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 346   gaagaggctgaaggatctgct 366
             |||||||||||||||||||||
Sbjct: 19802 gaagaggctgaaggatctgct 19782

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>emb|BX537141.17| Zebrafish DNA sequence from clone DKEY-9E8 in linkage group 2, complete
              sequence
          Length = 264534

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 207    ttctttgggaattcatcaagg 227
              |||||||||||||||||||||
Sbjct: 184713 ttctttgggaattcatcaagg 184733

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>gb|AC096624.23| Mus musculus strain C57BL/6J chromosome 11 clone rp23-326m22, complete
              sequence
          Length = 227682

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 346    gaagaggctgaaggatctgct 366
              |||||||||||||||||||||
Sbjct: 113113 gaagaggctgaaggatctgct 113133

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>ref|XM_469819.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1818

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 337  gaagaaagagaagaggctgaagga 360
            |||||||||||| |||||||||||
Sbjct: 1231 gaagaaagagaaaaggctgaagga 1254

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>gb|BT017037.1| Zea mays clone EL01N0202E08.c mRNA sequence
          Length = 806

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 330 cgttacagaagaaagagaag 349
           ||||||||||||||||||||
Sbjct: 71  cgttacagaagaaagagaag 90

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>gb|AY441151.1| Armigeres subalbatus ASAP ID: 40687 conserved unknown mRNA sequence
          Length = 536

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 378 actgcattgtgaagaagttcaaga 401
           |||||||| |||||||||||||||
Sbjct: 468 actgcattatgaagaagttcaaga 491

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>gb|AC136786.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0027P09,
              complete sequence
          Length = 171861

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 609    aaatcatgtctgattttttg 628
              ||||||||||||||||||||
Sbjct: 105645 aaatcatgtctgattttttg 105664

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>ref|XM_756405.1| Ustilago maydis 521 hypothetical protein (UM05351.1) partial mRNA
          Length = 2229

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 170  gaggagctggaggtggtcatggag 193
            |||| |||||||||||||||||||
Sbjct: 1466 gaggcgctggaggtggtcatggag 1443

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>gb|AY040221.1| Lactobacillus delbrueckii subsp. bulgaricus ATP-binding protein OppD
            (oppD), ATP-binding protein OppF (oppF), transmembrane
            protein OppB (oppB), transmembrane protein OppC (oppC),
            oligopeptide binding protein OppA1 (oppA1), and
            oligopeptide binding protein OppA2 (oppA2) genes,
            complete cds
          Length = 7920

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 513  gcaaggcgaagctggacaagatca 536
            ||||||| ||||||||||||||||
Sbjct: 4963 gcaaggccaagctggacaagatca 4986

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>gb|AC144722.11| Medicago truncatula clone mth2-26h11, complete sequence
          Length = 122089

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 384    ttgtgaagaagttcaagaag 403
              ||||||||||||||||||||
Sbjct: 102511 ttgtgaagaagttcaagaag 102530

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>gb|AC137996.33| Medicago truncatula clone mth2-19k16, complete sequence
          Length = 122085

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 384    ttgtgaagaagttcaagaag 403
              ||||||||||||||||||||
Sbjct: 102508 ttgtgaagaagttcaagaag 102527

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>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 514     caaggcgaagctggacaagatcat 537
               ||||||||| ||||||||||||||
Sbjct: 3393402 caaggcgaacctggacaagatcat 3393379

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>gb|AC091520.10| Mus musculus strain 129/SvJ clone mgs1-480e13, complete sequence
          Length = 105813

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 339 agaaagagaagaggctgaag 358
           ||||||||||||||||||||
Sbjct: 948 agaaagagaagaggctgaag 929

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>emb|AL356476.13| Human DNA sequence from clone RP11-655H13 on chromosome 10 Contains a
              mitogen-activated protein kinase-activated protein kinase 5
              (MAPKAPK5) pseudogene and a novel gene, complete sequence
          Length = 184510

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 332    ttacagaagaaagagaagag 351
              ||||||||||||||||||||
Sbjct: 160309 ttacagaagaaagagaagag 160328

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>ref|XM_690503.1| PREDICTED: Danio rerio similar to sodium-calcium exchanger
           (LOC567212), mRNA
          Length = 1422

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 175 gctggaggtggtcatggaggagtc 198
           ||||||||||||||| ||||||||
Sbjct: 630 gctggaggtggtcatcgaggagtc 653

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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 475     gaggatgccgaggatcaccg 494
               ||||||||||||||||||||
Sbjct: 1688064 gaggatgccgaggatcaccg 1688045

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>emb|AJ632075.1| Takifugu rubripes fmo gene for putative flavin-monooxygenase
          Length = 3087

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 433  cttcttctcgcaggtggaca 452
            ||||||||||||||||||||
Sbjct: 1752 cttcttctcgcaggtggaca 1771

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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 609      aaatcatgtctgattttttg 628
                ||||||||||||||||||||
Sbjct: 15695964 aaatcatgtctgattttttg 15695983

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>gb|AC023399.4|AC023399 Homo sapiens chromosome 17, clone RP11-780O8, complete sequence
          Length = 175446

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 604   aacataaatcatgtctgatt 623
             ||||||||||||||||||||
Sbjct: 83390 aacataaatcatgtctgatt 83409

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>gb|AC005177.1|AC005177 Homo sapiens chromosome 17, clone HCIT462L7, complete sequence
          Length = 142278

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 604   aacataaatcatgtctgatt 623
             ||||||||||||||||||||
Sbjct: 15480 aacataaatcatgtctgatt 15461

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>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 454     gcggctggtggcgcgggtgc 473
               ||||||||||||||||||||
Sbjct: 1557198 gcggctggtggcgcgggtgc 1557217

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>emb|BX004812.8| Zebrafish DNA sequence from clone CH211-201M7 in linkage group 25,
             complete sequence
          Length = 189554

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 181   ggtggtcatggaggagtcga 200
             ||||||||||||||||||||
Sbjct: 29711 ggtggtcatggaggagtcga 29692

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>dbj|AK073686.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033057B17, full
            insert sequence
          Length = 1297

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 609  aaatcatgtctgattttttg 628
            ||||||||||||||||||||
Sbjct: 1228 aaatcatgtctgattttttg 1247

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>emb|BX890602.8| Zebrafish DNA sequence from clone DKEYP-109H9 in linkage group 18,
             complete sequence
          Length = 191296

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 175   gctggaggtggtcatggaggagtc 198
             ||||||||||||||| ||||||||
Sbjct: 40800 gctggaggtggtcatcgaggagtc 40823

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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 609      aaatcatgtctgattttttg 628
                ||||||||||||||||||||
Sbjct: 15783341 aaatcatgtctgattttttg 15783360

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>gb|AC147644.3| Gallus gallus BAC clone CH261-77K20 from chromosome unknown, complete
              sequence
          Length = 191888

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 577    tttgctcttcccctgcttggagca 600
              ||||||||| ||||||||||||||
Sbjct: 124982 tttgctcttaccctgcttggagca 124959

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>gb|AC160111.2| Mus musculus BAC clone RP24-144L16 from chromosome 9, complete sequence
          Length = 134313

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 107   agagaggatagcctgaagga 126
             ||||||||||||||||||||
Sbjct: 32844 agagaggatagcctgaagga 32825


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,635,783
Number of Sequences: 3902068
Number of extensions: 5635783
Number of successful extensions: 124211
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 123808
Number of HSP's gapped (non-prelim): 401
length of query: 630
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 607
effective length of database: 17,143,297,704
effective search space: 10405981706328
effective search space used: 10405981706328
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result