ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags37n05 |
|---|---|
| Clone Library Name | barley_pub |
>NCBP1_HUMAN (Q09161) Nuclear cap-binding protein subunit 1 (80 kDa nuclear| cap-binding protein) (NCBP 80 kDa subunit) (CBP80) Length = 790 Score = 71.6 bits (174), Expect = 2e-12 Identities = 34/117 (29%), Positives = 66/117 (56%) Frame = +1 Query: 100 QPHADFYVYCILASLPWGGSELFEQVPDELERVLVGIQSYVSIRRHFDDIAFSVFETDEG 279 Q D+YVY L+SLPW G EL+E+ E++R+ +SY+ R+ V+ D+ Sbjct: 163 QVRRDWYVYAFLSSLPWVGKELYEKKDAEMDRIFANTESYLKRRQKTHVPMLQVWTADKP 222 Query: 280 NSPNKKDFMEDLWERMQLLSRNGWKVKSVPKPHLSLEAQLVVGKCHRFHPVSLPPPT 450 + ++++++ LW ++Q L ++ W+ + + +P+L+ ++ L H P + PP T Sbjct: 223 HP--QEEYLDCLWAQIQKLKKDRWQERHILRPYLAFDSILCEALQHNLPPFTPPPHT 277
>POLS_IBDVO (P27276) Structural polyprotein (PP) [Contains: Capsid protein VP2;| p1; p2; p3; p4; Protease VP4 (EC 3.4.21.-) (Nonstructural protein VP4) (NS); Capsid assembly protein VP3] Length = 1012 Score = 32.3 bits (72), Expect = 1.0 Identities = 18/62 (29%), Positives = 30/62 (48%) Frame = +1 Query: 238 FDDIAFSVFETDEGNSPNKKDFMEDLWERMQLLSRNGWKVKSVPKPHLSLEAQLVVGKCH 417 F D V+ET+ G PN++ + L M++ RN + PKP + +Q G+ Sbjct: 941 FIDEVARVYETNHGRVPNQEQMKDLLLTAMEMKHRNPRRAPPKPKPKPNAPSQRPPGRLG 1000 Query: 418 RF 423 R+ Sbjct: 1001 RW 1002
>POLS_IBDVS (P22351) Structural polyprotein (PP) [Contains: Capsid protein VP2;| p1; p2; p3; p4; Protease VP4 (EC 3.4.21.-) (Nonstructural protein VP4) (NS); Capsid assembly protein VP3] Length = 1012 Score = 31.6 bits (70), Expect = 1.8 Identities = 18/62 (29%), Positives = 28/62 (45%) Frame = +1 Query: 238 FDDIAFSVFETDEGNSPNKKDFMEDLWERMQLLSRNGWKVKSVPKPHLSLEAQLVVGKCH 417 F D V+E + G PN++ + L M+L RN + PKP + Q G+ Sbjct: 941 FIDEVAKVYEINHGRGPNQEQMKDLLLTAMELKHRNPRRAPPKPKPKPNAPTQRPPGRLG 1000 Query: 418 RF 423 R+ Sbjct: 1001 RW 1002
>MIP_COXBU (P51752) Peptidyl-prolyl cis-trans isomerase Mip precursor (EC| 5.2.1.8) (PPIase) (Rotamase) (Macrophage infectivity potentiator) Length = 230 Score = 31.2 bits (69), Expect = 2.3 Identities = 18/64 (28%), Positives = 29/64 (45%) Frame = +1 Query: 379 LSLEAQLVVGKCHRFHPVSLPPPTFTMSSSEILQGQEKHEANLKYPQRLRRLHIFPTNKA 558 LS ++ GK R H + + P TF+M S+ G+E + Q L++ F Sbjct: 32 LSYSMGVMTGKAFRKHDIKIDPQTFSMGLSDAYLGKETQMTEAEMRQTLQQ---FEKQSL 88 Query: 559 ENMQ 570 + MQ Sbjct: 89 QKMQ 92
>TYSY_METCA (Q603S2) Thymidylate synthase (EC 2.1.1.45) (TS) (TSase)| Length = 260 Score = 31.2 bits (69), Expect = 2.3 Identities = 17/33 (51%), Positives = 22/33 (66%) Frame = -3 Query: 390 FKRQVRFWNTFNLPSITRKKLHTLP*IFHEILF 292 F R +RF + LP +T KKLH LP I HE+L+ Sbjct: 30 FGRMMRFDLSRGLPLVTTKKLH-LPSIIHELLW 61
>POLS_IBDVA (P08364) Structural polyprotein (PP) [Contains: Capsid protein VP2;| p1; p2; p3; p4; Protease VP4 (EC 3.4.21.-) (Nonstructural protein VP4) (NS); Capsid assembly protein VP3] Length = 1012 Score = 31.2 bits (69), Expect = 2.3 Identities = 17/62 (27%), Positives = 29/62 (46%) Frame = +1 Query: 238 FDDIAFSVFETDEGNSPNKKDFMEDLWERMQLLSRNGWKVKSVPKPHLSLEAQLVVGKCH 417 F D V+E + G PN++ + L M++ RN + PKP + +Q G+ Sbjct: 941 FIDEVAKVYEINHGRGPNQEQMKDLLLTAMEMKHRNPRRAPPKPKPKPNAPSQRPPGRLG 1000 Query: 418 RF 423 R+ Sbjct: 1001 RW 1002
>ACFD_VIBCH (Q9KTQ4) Accessory colonization factor AcfD precursor| Length = 1520 Score = 30.8 bits (68), Expect = 3.0 Identities = 13/30 (43%), Positives = 20/30 (66%) Frame = +1 Query: 442 PPTFTMSSSEILQGQEKHEANLKYPQRLRR 531 P T T++ ++ L G+EKHE LK P R+ + Sbjct: 1110 PVTITIALADDLTGREKHELGLKRPPRMSK 1139
>AA1R_RAT (P25099) Adenosine A1 receptor| Length = 326 Score = 30.8 bits (68), Expect = 3.0 Identities = 12/37 (32%), Positives = 24/37 (64%) Frame = +2 Query: 62 QLYWMRKLEILLGNHMLIFMFTVFWLPFHGVVQNCLS 172 Q Y+ ++L+I +++F+F + WLP H + NC++ Sbjct: 223 QKYYGKELKIAKSLALILFLFALSWLPLH--ILNCIT 257
>AA1R_MOUSE (Q60612) Adenosine A1 receptor| Length = 326 Score = 30.8 bits (68), Expect = 3.0 Identities = 12/37 (32%), Positives = 24/37 (64%) Frame = +2 Query: 62 QLYWMRKLEILLGNHMLIFMFTVFWLPFHGVVQNCLS 172 Q Y+ ++L+I +++F+F + WLP H + NC++ Sbjct: 223 QKYYGKELKIAKSLALILFLFALSWLPLH--ILNCIT 257
>AA1R_HUMAN (P30542) Adenosine A1 receptor| Length = 326 Score = 30.8 bits (68), Expect = 3.0 Identities = 12/37 (32%), Positives = 24/37 (64%) Frame = +2 Query: 62 QLYWMRKLEILLGNHMLIFMFTVFWLPFHGVVQNCLS 172 Q Y+ ++L+I +++F+F + WLP H + NC++ Sbjct: 223 QKYYGKELKIAKSLALILFLFALSWLPLH--ILNCIT 257
>AA1R_CAVPO (P47745) Adenosine A1 receptor| Length = 326 Score = 30.8 bits (68), Expect = 3.0 Identities = 12/37 (32%), Positives = 24/37 (64%) Frame = +2 Query: 62 QLYWMRKLEILLGNHMLIFMFTVFWLPFHGVVQNCLS 172 Q Y+ ++L+I +++F+F + WLP H + NC++ Sbjct: 223 QKYYGKELKIAKSLALILFLFALSWLPLH--ILNCIT 257
>AA1R_CANFA (P11616) Adenosine A1 receptor| Length = 326 Score = 30.8 bits (68), Expect = 3.0 Identities = 12/37 (32%), Positives = 24/37 (64%) Frame = +2 Query: 62 QLYWMRKLEILLGNHMLIFMFTVFWLPFHGVVQNCLS 172 Q Y+ ++L+I +++F+F + WLP H + NC++ Sbjct: 223 QKYYGKELKIAKSLALILFLFALSWLPLH--ILNCIT 257
>AA1R_BOVIN (P28190) Adenosine A1 receptor| Length = 326 Score = 30.8 bits (68), Expect = 3.0 Identities = 12/37 (32%), Positives = 24/37 (64%) Frame = +2 Query: 62 QLYWMRKLEILLGNHMLIFMFTVFWLPFHGVVQNCLS 172 Q Y+ ++L+I +++F+F + WLP H + NC++ Sbjct: 223 QKYYGKELKIAKSLALILFLFALSWLPLH--ILNCIT 257
>POLS_IBDVE (P29802) Structural polyprotein (PP) [Contains: Capsid protein VP2;| p1; p2; p3; p4; Protease VP4 (EC 3.4.21.-) (Nonstructural protein VP4) (NS); Capsid assembly protein VP3] Length = 1012 Score = 30.8 bits (68), Expect = 3.0 Identities = 17/62 (27%), Positives = 28/62 (45%) Frame = +1 Query: 238 FDDIAFSVFETDEGNSPNKKDFMEDLWERMQLLSRNGWKVKSVPKPHLSLEAQLVVGKCH 417 F D V+E + G PN++ + L M++ RN + PKP + Q G+ Sbjct: 941 FIDEVAKVYEINHGRGPNQEQMKDLLLTAMEMKHRNPRRAPPKPKPKPNAPTQRPPGRLG 1000 Query: 418 RF 423 R+ Sbjct: 1001 RW 1002
>POLS_IBDV5 (P25219) Structural polyprotein (PP) [Contains: Capsid protein VP2;| p1; p2; p3; p4; Protease VP4 (EC 3.4.21.-) (Nonstructural protein VP4) (NS); Capsid assembly protein VP3] Length = 1012 Score = 30.8 bits (68), Expect = 3.0 Identities = 17/62 (27%), Positives = 28/62 (45%) Frame = +1 Query: 238 FDDIAFSVFETDEGNSPNKKDFMEDLWERMQLLSRNGWKVKSVPKPHLSLEAQLVVGKCH 417 F D V+E + G PN++ + L M++ RN + PKP + Q G+ Sbjct: 941 FIDEVAKVYEINHGRGPNQEQMKDLLLTAMEMKHRNPRRAPPKPKPKPNAPTQRPPGRLG 1000 Query: 418 RF 423 R+ Sbjct: 1001 RW 1002
>POLS_IBDVP (P25220) Structural polyprotein (PP) [Contains: Capsid protein VP2;| p1; p2; p3; p4; Protease VP4 (EC 3.4.21.-) (Nonstructural protein VP4) (NS); Capsid assembly protein VP3] (Fragment) Length = 993 Score = 30.4 bits (67), Expect = 4.0 Identities = 17/62 (27%), Positives = 28/62 (45%) Frame = +1 Query: 238 FDDIAFSVFETDEGNSPNKKDFMEDLWERMQLLSRNGWKVKSVPKPHLSLEAQLVVGKCH 417 F D V+E + G PN++ + L M++ RN + PKP + Q G+ Sbjct: 922 FIDEVAKVYEINHGRGPNQEQMKDLLLTAMEMKHRNPRRALPKPKPKPNAPTQRPPGRLG 981 Query: 418 RF 423 R+ Sbjct: 982 RW 983
>PCBB_PROHO (P95504) Chlorophyll a/b light-harvesting protein pcbB| Length = 347 Score = 30.4 bits (67), Expect = 4.0 Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 4/42 (9%) Frame = +2 Query: 77 RKLEILLGNHMLIF----MFTVFWLPFHGVVQNCLSKSRMNS 190 ++L ++LG+H+L+ +F V W+ FHGV + + R+ S Sbjct: 134 KQLGLILGHHLLLLGLGAIFFVGWIRFHGVYDSTIGDVRIVS 175
>AA1R_CHICK (P49892) Adenosine A1 receptor| Length = 324 Score = 30.4 bits (67), Expect = 4.0 Identities = 12/37 (32%), Positives = 24/37 (64%) Frame = +2 Query: 62 QLYWMRKLEILLGNHMLIFMFTVFWLPFHGVVQNCLS 172 Q Y+ ++L+I +++F+F + WLP H + NC++ Sbjct: 223 QKYYGKELKIAKSLALVLFLFALSWLPLH--ILNCIT 257
>POLS_IBDVC (P15480) Structural polyprotein (PP) [Contains: Capsid protein VP2;| p1; p2; p3; p4; Protease VP4 (EC 3.4.21.-) (Nonstructural protein VP4) (NS); Capsid assembly protein VP3] Length = 1012 Score = 30.4 bits (67), Expect = 4.0 Identities = 17/62 (27%), Positives = 28/62 (45%) Frame = +1 Query: 238 FDDIAFSVFETDEGNSPNKKDFMEDLWERMQLLSRNGWKVKSVPKPHLSLEAQLVVGKCH 417 F D V+E + G PN++ + L M++ RN + PKP + Q G+ Sbjct: 941 FIDEVAKVYEINHGRGPNQEQMKDLLLTAMEMKHRNPRRALPKPKPKPNAPTQRPPGRLG 1000 Query: 418 RF 423 R+ Sbjct: 1001 RW 1002
>POLS_IBDV (P61825) Structural polyprotein (PP) [Contains: Capsid protein VP2;| p1; p2; p3; p4; Protease VP4 (EC 3.4.21.-) (Nonstructural protein VP4) (NS); Capsid assembly protein VP3] Length = 1012 Score = 30.4 bits (67), Expect = 4.0 Identities = 17/62 (27%), Positives = 28/62 (45%) Frame = +1 Query: 238 FDDIAFSVFETDEGNSPNKKDFMEDLWERMQLLSRNGWKVKSVPKPHLSLEAQLVVGKCH 417 F D V+E + G PN++ + L M++ RN + PKP + Q G+ Sbjct: 941 FIDEVAKVYEINHGRGPNQEQMKDLLLTAMEMKHRNPRRALPKPKPKPNAPTQRPPGRLG 1000 Query: 418 RF 423 R+ Sbjct: 1001 RW 1002
>FRQ_SORFI (Q09033) Frequency clock protein| Length = 997 Score = 29.6 bits (65), Expect = 6.7 Identities = 11/21 (52%), Positives = 15/21 (71%) Frame = +1 Query: 385 LEAQLVVGKCHRFHPVSLPPP 447 L+ + V G+ HR +P SLPPP Sbjct: 838 LQIEYVAGEFHRLNPASLPPP 858
>BAB2_DROME (Q9W0K4) Protein bric-a-brac 2| Length = 1067 Score = 29.6 bits (65), Expect = 6.7 Identities = 17/83 (20%), Positives = 37/83 (44%) Frame = +1 Query: 304 MEDLWERMQLLSRNGWKVKSVPKPHLSLEAQLVVGKCHRFHPVSLPPPTFTMSSSEILQG 483 ++D E + + ++ V V P +E +LV K + +L PP ++SSE++ Sbjct: 65 LQDPSEVVDQMQKDTESVGEVKSPEKDVETELVKSKASPMNDQALTPPPRPLTSSEVVGL 124 Query: 484 QEKHEANLKYPQRLRRLHIFPTN 552 ++ L+ ++ P + Sbjct: 125 RDPEHTELRMCLEAKKSRSLPVS 147
>CAR15_PANTR (Q53B87) Caspase recruitment domain-containing protein 15| Length = 1040 Score = 29.6 bits (65), Expect = 6.7 Identities = 14/30 (46%), Positives = 16/30 (53%) Frame = -2 Query: 586 QNGLQVAYSQLYLLEIYGAYEAFEDTLDWL 497 Q Q SQL L + G+ E FE LDWL Sbjct: 31 QEAFQAQRSQLVELLVSGSLEGFESVLDWL 60
>CAR15_HYLLA (Q53B88) Caspase recruitment domain-containing protein 15| Length = 1040 Score = 29.6 bits (65), Expect = 6.7 Identities = 14/30 (46%), Positives = 16/30 (53%) Frame = -2 Query: 586 QNGLQVAYSQLYLLEIYGAYEAFEDTLDWL 497 Q Q SQL L + G+ E FE LDWL Sbjct: 31 QEAFQAQRSQLVELLVSGSLEGFESVLDWL 60
>CAR15_HUMAN (Q9HC29) Caspase recruitment domain-containing protein 15 (Nod2| protein) (Inflammatory bowel disease protein 1) Length = 1040 Score = 29.6 bits (65), Expect = 6.7 Identities = 14/30 (46%), Positives = 16/30 (53%) Frame = -2 Query: 586 QNGLQVAYSQLYLLEIYGAYEAFEDTLDWL 497 Q Q SQL L + G+ E FE LDWL Sbjct: 31 QEAFQAQRSQLVELLVSGSLEGFESVLDWL 60
>CAR15_MOUSE (Q8K3Z0) Caspase recruitment domain-containing protein 15 (Nod2| protein) Length = 1020 Score = 29.6 bits (65), Expect = 6.7 Identities = 15/30 (50%), Positives = 16/30 (53%) Frame = -2 Query: 586 QNGLQVAYSQLYLLEIYGAYEAFEDTLDWL 497 Q Q SQL L I G+ E FE LDWL Sbjct: 11 QEEFQAQRSQLVALLISGSLEGFESILDWL 40
>TTG1_ARATH (Q9XGN1) TRANSPARENT TESTA GLABRA 1 protein (TTG1 protein)| Length = 341 Score = 29.3 bits (64), Expect = 8.8 Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 3/80 (3%) Frame = +1 Query: 247 IAFSVFETDEGNSPNKKDFMEDLWERMQLLSRNGWKVKSVPKPHLSLEAQLVVGKCHRFH 426 +AFS + G+ F+ED R+ +LS + + P P+LS E H + Sbjct: 27 MAFSSLRSSSGHRIAVGSFLEDYNNRIDILSFDSDSMTVKPLPNLSFE--------HPYP 78 Query: 427 PVSL---PPPTFTMSSSEIL 477 P L PP SS ++L Sbjct: 79 PTKLMFSPPSLRRPSSGDLL 98
>CN161_HUMAN (Q9H7T0) Protein C14orf161| Length = 638 Score = 29.3 bits (64), Expect = 8.8 Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 2/71 (2%) Frame = +1 Query: 163 LFEQVPDELERVLVGIQSYVSIRRHFDDIAFSVFETDEGNSPNKKDFMEDLWERMQLLSR 342 LFE E VL G S++ I D+ T ++PN F++ W R Sbjct: 170 LFEDTDIEKTVVLPGYSSFL-ITSILDNKNALAIATMPESAPNNMTFLKSTWFLYNFGQR 228 Query: 343 NG--WKVKSVP 369 NG WK+ S P Sbjct: 229 NGRTWKIYSKP 239
>PUMA_PARUN (O61308) 227 kDa spindle- and centromere-associated protein (PUMA1)| Length = 1955 Score = 29.3 bits (64), Expect = 8.8 Identities = 15/44 (34%), Positives = 25/44 (56%) Frame = +1 Query: 181 DELERVLVGIQSYVSIRRHFDDIAFSVFETDEGNSPNKKDFMED 312 +E R +V + VSI++ DD++FS+ ET + P+ K D Sbjct: 107 EEYRRRIVDAEKQVSIQKANDDVSFSIKETADTWLPDMKSDAAD 150
>AA1R_RABIT (P34970) Adenosine A1 receptor| Length = 328 Score = 29.3 bits (64), Expect = 8.8 Identities = 11/35 (31%), Positives = 23/35 (65%) Frame = +2 Query: 68 YWMRKLEILLGNHMLIFMFTVFWLPFHGVVQNCLS 172 Y+ ++L+I +++F+F + WLP H + NC++ Sbjct: 225 YYGKELKIAKSLALILFLFALSWLPLH--ILNCVT 257 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 88,421,241 Number of Sequences: 219361 Number of extensions: 1864805 Number of successful extensions: 5448 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 5295 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5446 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5101629520 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
