ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags38c02 |
|---|---|
| Clone Library Name | barley_pub |
>ABT1_MOUSE (Q9QYL7) Activator of basal transcription 1| Length = 269 Score = 96.7 bits (239), Expect = 1e-20 Identities = 49/131 (37%), Positives = 70/131 (53%), Gaps = 11/131 (8%) Frame = +3 Query: 33 IFSKYGEVQRIYLVPEGQGHRKHSNVKAKA-----------YSEGWVEFAKKSVAKRVAN 179 + S YGEV R++ E ++ A A Y+EGWVEF K VAKRVA Sbjct: 67 LLSAYGEVGRVFFQAEDHFVKRKKKAAAAAGGKKGAKYSKDYTEGWVEFRDKRVAKRVAA 126 Query: 180 LLNGEQIGGKKRSSFYYDIWNIKYLRKFKWDDLVGEIAEKTHIREQKLTLXITAAKKQRD 359 L+ +G +KRS F YD+WN+KYL +F W L +A + +R Q+L + AK++ D Sbjct: 127 SLHNTPMGARKRSPFRYDLWNLKYLHRFTWSHLSEHLAFERQVRRQRLRAEVAQAKRETD 186 Query: 360 HYXSNAEKSXY 392 Y N E+ + Sbjct: 187 FYLRNVEQGQH 197
>ABT1_RAT (Q4KLM5) Activator of basal transcription 1| Length = 268 Score = 96.3 bits (238), Expect = 2e-20 Identities = 49/128 (38%), Positives = 69/128 (53%), Gaps = 11/128 (8%) Frame = +3 Query: 33 IFSKYGEVQRIYLVPEGQGHRKHSNVKAKA-----------YSEGWVEFAKKSVAKRVAN 179 + S YGEV R++ E R+ A A Y+EGWVEF K +AKRVA Sbjct: 66 LLSVYGEVGRVFFQAEDPFVRRKKKAAAAAGGKKGAKYSKDYTEGWVEFRDKRIAKRVAA 125 Query: 180 LLNGEQIGGKKRSSFYYDIWNIKYLRKFKWDDLVGEIAEKTHIREQKLTLXITAAKKQRD 359 L+ +G +KRS F YD+WN+KYL +F W L +A + +R Q+L + AK++ D Sbjct: 126 SLHNTPMGARKRSPFRYDLWNLKYLHRFTWSHLSEHLAFERQVRRQRLRAEVAQAKRETD 185 Query: 360 HYXSNAEK 383 Y N E+ Sbjct: 186 FYLRNVEQ 193
>ABT1_PONPY (Q5R9Y3) Activator of basal transcription 1| Length = 272 Score = 95.5 bits (236), Expect = 3e-20 Identities = 47/127 (37%), Positives = 70/127 (55%), Gaps = 10/127 (7%) Frame = +3 Query: 33 IFSKYGEVQRIYLVPEGQGHRKHSNVKAKA----------YSEGWVEFAKKSVAKRVANL 182 + S YGEV R++ E + R+ A A Y+EGWVEF K +AKRVA Sbjct: 65 LLSAYGEVGRVFFQAEDRFVRRKKKAAAAAGGKKRSYSKDYTEGWVEFRDKRIAKRVAAS 124 Query: 183 LNGEQIGGKKRSSFYYDIWNIKYLRKFKWDDLVGEIAEKTHIREQKLTLXITAAKKQRDH 362 L+ +G ++RS F YD+WN+KYL +F W L +A + +R Q+L + AK++ D Sbjct: 125 LHNTPMGARRRSPFRYDLWNLKYLHRFTWSHLSEHLAFERQVRRQRLRAEVAQAKRETDF 184 Query: 363 YXSNAEK 383 Y + E+ Sbjct: 185 YLQSVER 191
>ABT1_HUMAN (Q9ULW3) Activator of basal transcription 1 (hABT1) (Basal| transcriptional activator) Length = 272 Score = 95.5 bits (236), Expect = 3e-20 Identities = 47/127 (37%), Positives = 70/127 (55%), Gaps = 10/127 (7%) Frame = +3 Query: 33 IFSKYGEVQRIYLVPEGQGHRKHSNVKAKA----------YSEGWVEFAKKSVAKRVANL 182 + S YGEV R++ E + R+ A A Y+EGWVEF K +AKRVA Sbjct: 65 LLSAYGEVGRVFFQAEDRFVRRKKKAAAAAGGKKRSYTKDYTEGWVEFRDKRIAKRVAAS 124 Query: 183 LNGEQIGGKKRSSFYYDIWNIKYLRKFKWDDLVGEIAEKTHIREQKLTLXITAAKKQRDH 362 L+ +G ++RS F YD+WN+KYL +F W L +A + +R Q+L + AK++ D Sbjct: 125 LHNTPMGARRRSPFRYDLWNLKYLHRFTWSHLSEHLAFERQVRRQRLRAEVAQAKRETDF 184 Query: 363 YXSNAEK 383 Y + E+ Sbjct: 185 YLQSVER 191
>YN8V_YEAST (P53743) Hypothetical 36.4 kDa protein in POP2-HOL1 intergenic| region Length = 316 Score = 91.7 bits (226), Expect = 4e-19 Identities = 50/122 (40%), Positives = 67/122 (54%), Gaps = 4/122 (3%) Frame = +3 Query: 33 IFSKYGEVQRIYLVPEGQGHRKH----SNVKAKAYSEGWVEFAKKSVAKRVANLLNGEQI 200 I +++GEV R++L E K K Y EGW EF +K AK A LNG I Sbjct: 133 ILTRFGEVDRLFLKKEDDQKYKQRVKGGGNKKNKYEEGWAEFIRKRDAKLCAETLNGNII 192 Query: 201 GGKKRSSFYYDIWNIKYLRKFKWDDLVGEIAEKTHIREQKLTLXITAAKKQRDHYXSNAE 380 GGKK + ++ DI N+KYL FKW DL +IA + IR+ KL + I+ A K + N E Sbjct: 193 GGKKGTFYHDDILNVKYLPGFKWADLTEQIARENDIRQAKLEMEISQANKLNAEFIRNVE 252 Query: 381 KS 386 +S Sbjct: 253 QS 254
>RAVR2_HUMAN (Q9HCJ3) Protein raver-2| Length = 691 Score = 30.4 bits (67), Expect = 1.1 Identities = 18/64 (28%), Positives = 30/64 (46%) Frame = +3 Query: 45 YGEVQRIYLVPEGQGHRKHSNVKAKAYSEGWVEFAKKSVAKRVANLLNGEQIGGKKRSSF 224 YG ++R +LV +S V + G+VE+ KK A + L G Q+G + Sbjct: 165 YGNIERCFLV--------YSEVTGHSKGYGFVEYMKKDFAAKARLELLGRQLGASALFAQ 216 Query: 225 YYDI 236 + D+ Sbjct: 217 WMDV 220
>PUF68_DROME (Q8T6B9) Poly U-binding splicing factor half pint (68 kDa poly| U-binding splicing factor) (Protein half pint) (PUF60 homolog) Length = 637 Score = 30.0 bits (66), Expect = 1.4 Identities = 19/65 (29%), Positives = 34/65 (52%) Frame = +3 Query: 39 SKYGEVQRIYLVPEGQGHRKHSNVKAKAYSEGWVEFAKKSVAKRVANLLNGEQIGGKKRS 218 SK+G V R+ + E Q + + +A+ + +VEF+ + A R L+G GG++ Sbjct: 563 SKFGTVSRVIIFNEKQTENEDDD-EAEIIVKIFVEFSAGAEAMRGKEALDGRFFGGRRVV 621 Query: 219 SFYYD 233 + YD Sbjct: 622 AELYD 626
>RAVR2_MOUSE (Q7TPD6) Protein raver-2| Length = 673 Score = 30.0 bits (66), Expect = 1.4 Identities = 18/64 (28%), Positives = 30/64 (46%) Frame = +3 Query: 45 YGEVQRIYLVPEGQGHRKHSNVKAKAYSEGWVEFAKKSVAKRVANLLNGEQIGGKKRSSF 224 YG ++R +LV +S V + G+VE+ KK A + L G Q+G + Sbjct: 154 YGNIERCFLV--------YSEVTGHSKGYGFVEYMKKDFAAKARLELLGRQMGASALFAQ 205 Query: 225 YYDI 236 + D+ Sbjct: 206 WMDV 209
>SURF6_FUGRU (O57594) Surfeit locus protein 6 homolog| Length = 359 Score = 29.3 bits (64), Expect = 2.3 Identities = 15/40 (37%), Positives = 20/40 (50%) Frame = +3 Query: 255 RKFKWDDLVGEIAEKTHIREQKLTLXITAAKKQRDHYXSN 374 RK KW +L G +AEK R+ K T I K+ + N Sbjct: 302 RKKKWAELSGNLAEKMQQRQDKRTRNIQKRKQLKTEKKKN 341
>CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 28.9 bits (63), Expect = 3.1 Identities = 15/60 (25%), Positives = 28/60 (46%) Frame = +3 Query: 33 IFSKYGEVQRIYLVPEGQGHRKHSNVKAKAYSEGWVEFAKKSVAKRVANLLNGEQIGGKK 212 +FSKYG++ + +V + + R G+V F AK +NG+ + G++ Sbjct: 25 VFSKYGQISEVVVVKDRETQRSR--------GFGFVTFENIDDAKDAMMAMNGKSVDGRQ 76
>CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) Length = 172 Score = 28.9 bits (63), Expect = 3.1 Identities = 15/60 (25%), Positives = 28/60 (46%) Frame = +3 Query: 33 IFSKYGEVQRIYLVPEGQGHRKHSNVKAKAYSEGWVEFAKKSVAKRVANLLNGEQIGGKK 212 +FSKYG++ + +V + + R G+V F AK +NG+ + G++ Sbjct: 25 VFSKYGQISEVVVVKDRETQRSR--------GFGFVTFENIDDAKDAMMAMNGKSVDGRQ 76
>CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 28.9 bits (63), Expect = 3.1 Identities = 15/60 (25%), Positives = 28/60 (46%) Frame = +3 Query: 33 IFSKYGEVQRIYLVPEGQGHRKHSNVKAKAYSEGWVEFAKKSVAKRVANLLNGEQIGGKK 212 +FSKYG++ + +V + + R G+V F AK +NG+ + G++ Sbjct: 25 VFSKYGQISEVVVVKDRETQRSR--------GFGFVTFENIDDAKDAMMAMNGKSVDGRQ 76
>CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 28.9 bits (63), Expect = 3.1 Identities = 15/60 (25%), Positives = 28/60 (46%) Frame = +3 Query: 33 IFSKYGEVQRIYLVPEGQGHRKHSNVKAKAYSEGWVEFAKKSVAKRVANLLNGEQIGGKK 212 +FSKYG++ + +V + + R G+V F AK +NG+ + G++ Sbjct: 25 VFSKYGQISEVVVVKDRETQRSR--------GFGFVTFENIDDAKDAMMAMNGKSVDGRQ 76
>CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 28.9 bits (63), Expect = 3.1 Identities = 15/60 (25%), Positives = 28/60 (46%) Frame = +3 Query: 33 IFSKYGEVQRIYLVPEGQGHRKHSNVKAKAYSEGWVEFAKKSVAKRVANLLNGEQIGGKK 212 +FSKYG++ + +V + + R G+V F AK +NG+ + G++ Sbjct: 25 VFSKYGQISEVVVVKDRETQRSR--------GFGFVTFENIDDAKDAMMAMNGKSVDGRQ 76
>YFHR_ECOLI (P77538) Hypothetical protein yfhR| Length = 284 Score = 28.1 bits (61), Expect = 5.2 Identities = 14/48 (29%), Positives = 25/48 (52%) Frame = +3 Query: 3 HMXPVRTSAXIFSKYGEVQRIYLVPEGQGHRKHSNVKAKAYSEGWVEF 146 H+ P + S ++S E +R+ L+P+G+ S+ Y E V+F Sbjct: 228 HVIPWQHSEKLYSLAKEPKRLILIPDGEHIDAFSDRHGDVYREQMVDF 275
>PLC1_CANAL (O13433) 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase| 1 (EC 3.1.4.11) (Phosphoinositide phospholipase C) (PLC-1) (Phospholipase C-1) Length = 1099 Score = 27.7 bits (60), Expect = 6.8 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 3/72 (4%) Frame = +3 Query: 51 EVQRIYLVPEGQGHRKHSNVKAKAYSEGWVE---FAKKSVAKRVANLLNGEQIGGKKRSS 221 +++ IY+ EG G+R+ N+ K + W+ F K + + +L+ KK S Sbjct: 297 DIKSIYIQNEGSGYREELNISQK-LEKNWITIIYFNHKKNSLKSLHLITDNDHDFKKLIS 355 Query: 222 FYYDIWNIKYLR 257 I+N+K LR Sbjct: 356 ---AIYNLKQLR 364
>NEP_RABIT (P08049) Neprilysin (EC 3.4.24.11) (Neutral endopeptidase) (NEP)| (Enkephalinase) (Neutral endopeptidase 24.11) (Atriopeptidase) (CD10 antigen) Length = 749 Score = 27.7 bits (60), Expect = 6.8 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 7/39 (17%) Frame = -3 Query: 293 SYFTNQI-------IPFELPEILYVPDVIIK*RPLLPTY 198 S FTN+I IP E ++Y P+ +IK +P+L Y Sbjct: 323 SNFTNEIMSTVNINIPNEEDVVVYAPEYLIKLKPILTKY 361
>ATBP_STAAU (P18179) Potential ATP-binding protein (ORF 271)| Length = 271 Score = 27.7 bits (60), Expect = 6.8 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 2/65 (3%) Frame = +3 Query: 108 VKAKAYSEGWVEFAKKSVAKRVANLLNGEQIGGKKRSSFYYDIWNI--KYLRKFKWDDLV 281 ++ K Y + EF + + + G+ GK SS YY WN K + W+DL Sbjct: 8 IETKEYKR-FAEFCDACIKYQYIGICYGQPGVGKTLSSRYYTNWNTIEKQVNHRGWEDLA 66 Query: 282 GEIAE 296 + + Sbjct: 67 SKTTD 71
>TRA2_DROME (P19018) Transformer-2 sex-determining protein| Length = 264 Score = 27.7 bits (60), Expect = 6.8 Identities = 15/60 (25%), Positives = 30/60 (50%) Frame = +3 Query: 33 IFSKYGEVQRIYLVPEGQGHRKHSNVKAKAYSEGWVEFAKKSVAKRVANLLNGEQIGGKK 212 +F+KYG ++RI +V + Q R ++ F K S A+ + +G ++ G++ Sbjct: 116 LFNKYGPIERIQMVIDAQTQRSRGFC--------FIYFEKLSDARAAKDSCSGIEVDGRR 167
>YCXA_ASTLO (P34782) Hypothetical 66.5 kDa protein in trnI-trnV intergenic| region (ORF558) Length = 558 Score = 27.7 bits (60), Expect = 6.8 Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 7/81 (8%) Frame = +3 Query: 141 EFAKKSVAKRVANLLNGEQIGGKKRSSFYYDIWNIKYLRKFKW------DDLVG-EIAEK 299 EF K+ R LNG IGG ++ + + +IK ++K K D LVG + Sbjct: 242 EFWKQKYGNRFY-YLNGHGIGGNICANDFVEFKDIKDIKKRKKYDSNKNDILVGVRDLLR 300 Query: 300 THIREQKLTLXITAAKKQRDH 362 H++E+K+ L ++ K+ ++ Sbjct: 301 EHLKEKKMNLKLSGDKRIEEY 321
>MCE_MIMIV (Q5UQX1) Probable mRNA capping enzyme [Includes: Polynucleotide| 5'-triphosphatase (EC 3.1.3.33) (mRNA 5'-triphosphatase) (TPase); mRNA guanylyltransferase (EC 2.7.7.50) (GTP--RNA guanylyltransferase) (GTase); mRNA (guanine-N(7)-)-methyltransfer Length = 1170 Score = 27.3 bits (59), Expect = 8.9 Identities = 10/28 (35%), Positives = 17/28 (60%) Frame = -3 Query: 320 FLFPDMSLLSYFTNQIIPFELPEILYVP 237 F++ DM Y N++ P++L I+Y P Sbjct: 447 FMYADMIWKLYVYNELTPYQLDGIIYTP 474
>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) (Testis-specific poly(A)-binding protein) Length = 631 Score = 27.3 bits (59), Expect = 8.9 Identities = 14/60 (23%), Positives = 32/60 (53%) Frame = +3 Query: 33 IFSKYGEVQRIYLVPEGQGHRKHSNVKAKAYSEGWVEFAKKSVAKRVANLLNGEQIGGKK 212 +F K+G + ++ + G K+K + G+V F + A++ + +NG+++ GK+ Sbjct: 210 LFGKFGPALSVKVMTDESG-------KSKGF--GFVSFERHEDAQKAVDEMNGKELNGKQ 260
>Y725_METJA (Q58135) Hypothetical protein MJ0725| Length = 261 Score = 27.3 bits (59), Expect = 8.9 Identities = 18/50 (36%), Positives = 26/50 (52%) Frame = +3 Query: 231 DIWNIKYLRKFKWDDLVGEIAEKTHIREQKLTLXITAAKKQRDHYXSNAE 380 D WN +R +D++ E+AEK I E K T+ I A +K + N E Sbjct: 198 DGWNTVIVRNKMVEDIINEMAEKGLI-EVKETVDIKAIEKLENIKKKNEE 246
>UNG_MIMIV (Q5UPT2) Probable uracil-DNA glycosylase (EC 3.2.2.-) (UDG)| Length = 370 Score = 27.3 bits (59), Expect = 8.9 Identities = 26/107 (24%), Positives = 45/107 (42%), Gaps = 14/107 (13%) Frame = +3 Query: 78 EGQGHRKHSNVKAKAYSEGWVEFAKKSVAKRVANLLNGEQIGGK----KRSSFYYDIW-- 239 E S K K+ + +KKSV K+ NLL G +I + +++++ W Sbjct: 57 ESSDSESESESKKKSKKSKKSKKSKKSVTKKKNNLLVGNRIITEYILIDANNYHFKSWIE 116 Query: 240 -------NIKYLR-KFKWDDLVGEIAEKTHIREQKLTLXITAAKKQR 356 N+K L + +W D + KT+ + + L K+QR Sbjct: 117 CFPDCKVNLKLLLFRPEWFDFFKYVESKTYFPQLESKLSSYLEKRQR 163
>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 27.3 bits (59), Expect = 8.9 Identities = 14/60 (23%), Positives = 32/60 (53%) Frame = +3 Query: 33 IFSKYGEVQRIYLVPEGQGHRKHSNVKAKAYSEGWVEFAKKSVAKRVANLLNGEQIGGKK 212 +F K+G + ++ + G K+K + G+V F + A++ + +NG+++ GK+ Sbjct: 210 LFGKFGPALSVKVMTDESG-------KSKGF--GFVSFERHEDAQKAVDEMNGKELNGKQ 260
>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 27.3 bits (59), Expect = 8.9 Identities = 14/60 (23%), Positives = 32/60 (53%) Frame = +3 Query: 33 IFSKYGEVQRIYLVPEGQGHRKHSNVKAKAYSEGWVEFAKKSVAKRVANLLNGEQIGGKK 212 +F K+G + ++ + G K+K + G+V F + A++ + +NG+++ GK+ Sbjct: 210 LFGKFGPALSVKVMTDESG-------KSKGF--GFVSFERHEDAQKAVDEMNGKELNGKQ 260
>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 27.3 bits (59), Expect = 8.9 Identities = 14/60 (23%), Positives = 32/60 (53%) Frame = +3 Query: 33 IFSKYGEVQRIYLVPEGQGHRKHSNVKAKAYSEGWVEFAKKSVAKRVANLLNGEQIGGKK 212 +F K+G + ++ + G K+K + G+V F + A++ + +NG+++ GK+ Sbjct: 210 LFGKFGPALSVKVMTDESG-------KSKGF--GFVSFERHEDAQKAVDEMNGKELNGKQ 260
>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 27.3 bits (59), Expect = 8.9 Identities = 14/60 (23%), Positives = 32/60 (53%) Frame = +3 Query: 33 IFSKYGEVQRIYLVPEGQGHRKHSNVKAKAYSEGWVEFAKKSVAKRVANLLNGEQIGGKK 212 +F K+G + ++ + G K+K + G+V F + A++ + +NG+++ GK+ Sbjct: 210 LFGKFGPALSVKVMTDESG-------KSKGF--GFVSFERHEDAQKAVDEMNGKELNGKQ 260
>MET18_YEAST (P40469) DNA repair/transcription protein MET18/MMS19| Length = 1032 Score = 27.3 bits (59), Expect = 8.9 Identities = 13/36 (36%), Positives = 21/36 (58%) Frame = +3 Query: 159 VAKRVANLLNGEQIGGKKRSSFYYDIWNIKYLRKFK 266 +AK+ +LL+ E+IG F + +I L+KFK Sbjct: 813 IAKKFIDLLSNEEIGSLVSKLFEVFVMDISSLKKFK 848
>UPP_LEGPL (Q5WUK0) Uracil phosphoribosyltransferase (EC 2.4.2.9) (UMP| pyrophosphorylase) (UPRTase) Length = 214 Score = 27.3 bits (59), Expect = 8.9 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 5/54 (9%) Frame = -3 Query: 266 FELPEILYVPDVIIK*RPLLPT---YLFTIKQIS--HPLGDTFLCKLNPPFGVS 120 F+LPE DVI+ P+L T + +K++ HP FLC L P G+S Sbjct: 118 FKLPEHTQDRDVIVV-DPMLATGNSAIAAVKEVKALHPKSIKFLCLLAAPEGIS 170
>UPP_LEGPH (Q5ZTB9) Uracil phosphoribosyltransferase (EC 2.4.2.9) (UMP| pyrophosphorylase) (UPRTase) Length = 214 Score = 27.3 bits (59), Expect = 8.9 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 5/54 (9%) Frame = -3 Query: 266 FELPEILYVPDVIIK*RPLLPT---YLFTIKQIS--HPLGDTFLCKLNPPFGVS 120 F+LPE DVI+ P+L T + +K++ HP FLC L P G+S Sbjct: 118 FKLPEHTQDRDVIVV-DPMLATGNSAIAAVKEVKALHPKSIKFLCLLASPEGIS 170
>UPP_LEGPA (Q5X340) Uracil phosphoribosyltransferase (EC 2.4.2.9) (UMP| pyrophosphorylase) (UPRTase) Length = 214 Score = 27.3 bits (59), Expect = 8.9 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 5/54 (9%) Frame = -3 Query: 266 FELPEILYVPDVIIK*RPLLPT---YLFTIKQIS--HPLGDTFLCKLNPPFGVS 120 F+LPE DVI+ P+L T + +K++ HP FLC L P G+S Sbjct: 118 FKLPEHTQDRDVIVV-DPMLATGNSAIAAVKEVKALHPKSIKFLCLLAAPEGIS 170 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,257,936 Number of Sequences: 219361 Number of extensions: 893596 Number of successful extensions: 2389 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 2354 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2389 length of database: 80,573,946 effective HSP length: 110 effective length of database: 56,444,236 effective search space used: 1354661664 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
