ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags38c02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_186039.2| Oryza sativa (japonica cultivar-group), mRNA 341 1e-90
2dbj|AK103399.1| Oryza sativa (japonica cultivar-group) cDNA clon... 341 1e-90
3gb|BT017786.1| Zea mays clone EL01N0504A09.c mRNA sequence 331 1e-87
4dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 129 8e-27
5dbj|AP005452.5| Oryza sativa (japonica cultivar-group) genomic D... 129 8e-27
6gb|AC066613.7|AC066613 Homo sapiens chromosome 15 clone RP11-707... 42 1.4
7gb|AC020891.8|AC020891 Homo sapiens chromosome 15 clone RP11-108... 42 1.4
8ref|NM_115509.2| Arabidopsis thaliana TATA-binding protein bindi... 40 5.4
9ref|NM_001035796.1| Arabidopsis thaliana TATA-binding protein bi... 40 5.4
10gb|AC161178.16| Mus musculus chromosome 1, clone RP23-9F16, comp... 40 5.4
11ref|XM_632073.1| Dictyostelium discoideum hypothetical protein (... 40 5.4
12gb|AY313848.1| Vaccinia virus strain Acambis clone 3, complete g... 40 5.4
13gb|AY313847.1| Vaccinia virus strain Acambis clone 2000, complet... 40 5.4
14gb|BT011791.1| Arabidopsis thaliana At3g56510 mRNA, complete cds 40 5.4
15gb|AC113198.15| Mus musculus chromosome 14, clone RP23-248E15, c... 40 5.4
16gb|BT010761.1| Arabidopsis thaliana At3g56510 gene, complete cds 40 5.4
17gb|AC121789.2| Mus musculus BAC clone RP23-398C14 from 1, comple... 40 5.4
18gb|DQ377945.1| Vaccinia virus strain 3737, complete genome 40 5.4
19gb|M35027.1|VACCG Vaccinia virus Copenhagen, complete genome 40 5.4
20gb|AY243312.1| Vaccinia virus WR, complete genome 40 5.4
21gb|AY766183.1| Vaccinia virus strain ACAM1000, partial sequence 40 5.4
22emb|BX825854.1|CNS0A6HL Arabidopsis thaliana Full-length cDNA Co... 40 5.4
23gb|AC023157.38| Homo sapiens 12 BAC RP11-467L13 (Roswell Park Ca... 40 5.4
24gb|AC155246.1| Mus musculus BAC clone RP24-303C15 from 14, compl... 40 5.4
25gb|AC139331.5| Mus musculus BAC clone RP24-189J10 from 1, comple... 40 5.4
26gb|M19117.1|VACRRSSA Vaccinia virus ribonucleotide reductase, sm... 40 5.4
27gb|M34368.1|VACFGENE Vaccinia virus F1L, F2L, F3L, F4L, F5L, F6L... 40 5.4
28gb|M57774.1|VACCH8 Chinese vaccinia virus F1 segment DNA fragment 40 5.4 
>ref|NM_186039.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1238

 Score =  341 bits (172), Expect = 1e-90
 Identities = 298/339 (87%), Gaps = 1/339 (0%)
 Strand = Plus / Plus

                                                                       
Query: 20  cacgtccgccagnatcttctccaagtacggcgaggtgcagaggatctacctcgtccccga 79
           |||||||||||| ||  |||||||||| ||||||||||||||||| ||||| || || ||
Sbjct: 307 cacgtccgccag-atgctctccaagtatggcgaggtgcagaggatttaccttgtgcctga 365

                                                                       
Query: 80  aggtcaaggtcatcgaaagcatagtaacgtaaaagcgaaggcttactccgaagggtgggt 139
           ||| ||||||||||| ||||| | ||| ||   ||||||||| ||| | ||||||||| |
Sbjct: 366 aggccaaggtcatcgcaagcacactaatgttcgagcgaaggcgtacactgaagggtggat 425

                                                                       
Query: 140 tgagtttgcaaagaaaagtgtcgccaagagggtggctaatttgcttaatggtgaacaaat 199
           ||| ||| | |||||||| || |||||||||||||||||| | ||||| |||||||||||
Sbjct: 426 tgaattttccaagaaaagcgttgccaagagggtggctaatctacttaacggtgaacaaat 485

                                                                       
Query: 200 aggtgggaagaagaggtcgtcattttattatgacatctggaacataaagtatctcaggaa 259
           ||||||||||||||||||  |||||||||||||||| ||||||||||| ||||||| |||
Sbjct: 486 aggtgggaagaagaggtctccattttattatgacatttggaacataaaatatctcaagaa 545

                                                                       
Query: 260 gttcaaatgggatgatctggttggtgaaatagctgagaagactcatatcagggaacagaa 319
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 546 attcaaatgggatgatcttgttggtgaaatagctgagaagactcatatcagggagcagaa 605

                                                  
Query: 320 attaacattggngataacagctgcaaagaaacaacgtga 358
           | |||  |||| |||| ||||||||||||||||||||||
Sbjct: 606 actaaacttggagatagcagctgcaaagaaacaacgtga 644
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>dbj|AK103399.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033127O12, full
           insert sequence
          Length = 1238

 Score =  341 bits (172), Expect = 1e-90
 Identities = 298/339 (87%), Gaps = 1/339 (0%)
 Strand = Plus / Plus

                                                                       
Query: 20  cacgtccgccagnatcttctccaagtacggcgaggtgcagaggatctacctcgtccccga 79
           |||||||||||| ||  |||||||||| ||||||||||||||||| ||||| || || ||
Sbjct: 307 cacgtccgccag-atgctctccaagtatggcgaggtgcagaggatttaccttgtgcctga 365

                                                                       
Query: 80  aggtcaaggtcatcgaaagcatagtaacgtaaaagcgaaggcttactccgaagggtgggt 139
           ||| ||||||||||| ||||| | ||| ||   ||||||||| ||| | ||||||||| |
Sbjct: 366 aggccaaggtcatcgcaagcacactaatgttcgagcgaaggcgtacactgaagggtggat 425

                                                                       
Query: 140 tgagtttgcaaagaaaagtgtcgccaagagggtggctaatttgcttaatggtgaacaaat 199
           ||| ||| | |||||||| || |||||||||||||||||| | ||||| |||||||||||
Sbjct: 426 tgaattttccaagaaaagcgttgccaagagggtggctaatctacttaacggtgaacaaat 485

                                                                       
Query: 200 aggtgggaagaagaggtcgtcattttattatgacatctggaacataaagtatctcaggaa 259
           ||||||||||||||||||  |||||||||||||||| ||||||||||| ||||||| |||
Sbjct: 486 aggtgggaagaagaggtctccattttattatgacatttggaacataaaatatctcaagaa 545

                                                                       
Query: 260 gttcaaatgggatgatctggttggtgaaatagctgagaagactcatatcagggaacagaa 319
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 546 attcaaatgggatgatcttgttggtgaaatagctgagaagactcatatcagggagcagaa 605

                                                  
Query: 320 attaacattggngataacagctgcaaagaaacaacgtga 358
           | |||  |||| |||| ||||||||||||||||||||||
Sbjct: 606 actaaacttggagatagcagctgcaaagaaacaacgtga 644
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>gb|BT017786.1| Zea mays clone EL01N0504A09.c mRNA sequence
          Length = 1044

 Score =  331 bits (167), Expect = 1e-87
 Identities = 268/302 (88%)
 Strand = Plus / Plus

                                                                       
Query: 60  aggatctacctcgtccccgaaggtcaaggtcatcgaaagcatagtaacgtaaaagcgaag 119
           ||||| |||||||| |||||||||||||||||||  ||||||| ||  || |||||||||
Sbjct: 13  aggatttacctcgtgcccgaaggtcaaggtcatcacaagcatactagtgttaaagcgaag 72

                                                                       
Query: 120 gcttactccgaagggtgggttgagtttgcaaagaaaagtgtcgccaagagggtggctaat 179
           |||||||| ||||||||| |||| ||||||||||| ||||| |||||||| |||||||||
Sbjct: 73  gcttactcggaagggtggattgaatttgcaaagaagagtgttgccaagagagtggctaat 132

                                                                       
Query: 180 ttgcttaatggtgaacaaataggtgggaagaagaggtcgtcattttattatgacatctgg 239
            |||||||||||||||||||||| || |||||||| ||  |||||||||||||||| |||
Sbjct: 133 ctgcttaatggtgaacaaataggcggtaagaagagatctccattttattatgacatttgg 192

                                                                       
Query: 240 aacataaagtatctcaggaagttcaaatgggatgatctggttggtgaaatagctgagaag 299
           ||||| || || ||||||||||| |||||||||||||||||||||||||| |||||||| 
Sbjct: 193 aacattaaatacctcaggaagtttaaatgggatgatctggttggtgaaatggctgagaaa 252

                                                                       
Query: 300 actcatatcagggaacagaaattaacattggngataacagctgcaaagaaacaacgtgat 359
           ||||||||||| || ||||||||||| |||| |||| |||| |||||||||||||| |||
Sbjct: 253 actcatatcagagagcagaaattaaccttggagatagcagcagcaaagaaacaacgcgat 312

             
Query: 360 ca 361
           ||
Sbjct: 313 ca 314
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  129 bits (65), Expect = 8e-27
 Identities = 86/93 (92%)
 Strand = Plus / Plus

                                                                            
Query: 199      taggtgggaagaagaggtcgtcattttattatgacatctggaacataaagtatctcagga 258
                |||||||||||||||||||  |||||||||||||||| ||||||||||| ||||||| ||
Sbjct: 27893318 taggtgggaagaagaggtctccattttattatgacatttggaacataaaatatctcaaga 27893377

                                                 
Query: 259      agttcaaatgggatgatctggttggtgaaatag 291
                | ||||||||||||||||| |||||||||||||
Sbjct: 27893378 aattcaaatgggatgatcttgttggtgaaatag 27893410



 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 64/70 (91%)
 Strand = Plus / Plus

                                                                            
Query: 289      tagctgagaagactcatatcagggaacagaaattaacattggngataacagctgcaaaga 348
                ||||||||||||||||||||||||| |||||| |||  |||| |||| ||||||||||||
Sbjct: 27893500 tagctgagaagactcatatcagggagcagaaactaaacttggagatagcagctgcaaaga 27893559

                          
Query: 349      aacaacgtga 358
                ||||||||||
Sbjct: 27893560 aacaacgtga 27893569



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 63/72 (87%)
 Strand = Plus / Plus

                                                                            
Query: 133      ggtgggttgagtttgcaaagaaaagtgtcgccaagagggtggctaatttgcttaatggtg 192
                ||||| |||| ||| | |||||||| || |||||||||||||||||| | ||||| ||||
Sbjct: 27893070 ggtggattgaattttccaagaaaagcgttgccaagagggtggctaatctacttaacggtg 27893129

                            
Query: 193      aacaaataggtg 204
                ||||||||||||
Sbjct: 27893130 aacaaataggtg 27893141



 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 56/64 (87%), Gaps = 1/64 (1%)
 Strand = Plus / Plus

                                                                            
Query: 20       cacgtccgccagnatcttctccaagtacggcgaggtgcagaggatctacctcgtccccga 79
                |||||||||||| ||  |||||||||| ||||||||||||||||| ||||| || || ||
Sbjct: 27891904 cacgtccgccag-atgctctccaagtatggcgaggtgcagaggatttaccttgtgcctga 27891962

                    
Query: 80       aggt 83
                ||||
Sbjct: 27891963 aggt 27891966
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>dbj|AP005452.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0453E03
          Length = 159980

 Score =  129 bits (65), Expect = 8e-27
 Identities = 86/93 (92%)
 Strand = Plus / Plus

                                                                         
Query: 199   taggtgggaagaagaggtcgtcattttattatgacatctggaacataaagtatctcagga 258
             |||||||||||||||||||  |||||||||||||||| ||||||||||| ||||||| ||
Sbjct: 56676 taggtgggaagaagaggtctccattttattatgacatttggaacataaaatatctcaaga 56735

                                              
Query: 259   agttcaaatgggatgatctggttggtgaaatag 291
             | ||||||||||||||||| |||||||||||||
Sbjct: 56736 aattcaaatgggatgatcttgttggtgaaatag 56768



 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 64/70 (91%)
 Strand = Plus / Plus

                                                                         
Query: 289   tagctgagaagactcatatcagggaacagaaattaacattggngataacagctgcaaaga 348
             ||||||||||||||||||||||||| |||||| |||  |||| |||| ||||||||||||
Sbjct: 56858 tagctgagaagactcatatcagggagcagaaactaaacttggagatagcagctgcaaaga 56917

                       
Query: 349   aacaacgtga 358
             ||||||||||
Sbjct: 56918 aacaacgtga 56927



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 63/72 (87%)
 Strand = Plus / Plus

                                                                         
Query: 133   ggtgggttgagtttgcaaagaaaagtgtcgccaagagggtggctaatttgcttaatggtg 192
             ||||| |||| ||| | |||||||| || |||||||||||||||||| | ||||| ||||
Sbjct: 56428 ggtggattgaattttccaagaaaagcgttgccaagagggtggctaatctacttaacggtg 56487

                         
Query: 193   aacaaataggtg 204
             ||||||||||||
Sbjct: 56488 aacaaataggtg 56499



 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 56/64 (87%), Gaps = 1/64 (1%)
 Strand = Plus / Plus

                                                                         
Query: 20    cacgtccgccagnatcttctccaagtacggcgaggtgcagaggatctacctcgtccccga 79
             |||||||||||| ||  |||||||||| ||||||||||||||||| ||||| || || ||
Sbjct: 55262 cacgtccgccag-atgctctccaagtatggcgaggtgcagaggatttaccttgtgcctga 55320

                 
Query: 80    aggt 83
             ||||
Sbjct: 55321 aggt 55324
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>gb|AC066613.7|AC066613 Homo sapiens chromosome 15 clone RP11-707P17 map 15q21.2, complete
             sequence
          Length = 169077

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 276   ctggttggtgaaatagctgagaaga 300
             |||||||| ||||||||||||||||
Sbjct: 32004 ctggttggagaaatagctgagaaga 32028
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>gb|AC020891.8|AC020891 Homo sapiens chromosome 15 clone RP11-108K3 map 15q21, complete sequence
          Length = 144714

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 276    ctggttggtgaaatagctgagaaga 300
              |||||||| ||||||||||||||||
Sbjct: 130758 ctggttggagaaatagctgagaaga 130782
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>ref|NM_115509.2| Arabidopsis thaliana TATA-binding protein binding AT3G56510
           transcript variant AT3G56510.1 mRNA, complete cds
          Length = 1289

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 92/116 (79%)
 Strand = Plus / Plus

                                                                       
Query: 129 gaagggtgggttgagtttgcaaagaaaagtgtcgccaagagggtggctaatttgcttaat 188
           ||||||||||| |||||||| ||||| || || || ||  |||| ||  || |||| |||
Sbjct: 408 gaagggtgggtggagtttgctaagaagagcgtagctaaacgggttgcagatatgctaaat 467

                                                                   
Query: 189 ggtgaacaaataggtgggaagaagaggtcgtcattttattatgacatctggaacat 244
           || |||||||| || ||||| |||| ||| ||| | || ||||| || ||||||||
Sbjct: 468 ggagaacaaatcggggggaaaaagaagtcatcagtatactatgatatttggaacat 523
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>ref|NM_001035796.1| Arabidopsis thaliana TATA-binding protein binding AT3G56510
           transcript variant AT3G56510.2 mRNA, complete cds
          Length = 1293

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 92/116 (79%)
 Strand = Plus / Plus

                                                                       
Query: 129 gaagggtgggttgagtttgcaaagaaaagtgtcgccaagagggtggctaatttgcttaat 188
           ||||||||||| |||||||| ||||| || || || ||  |||| ||  || |||| |||
Sbjct: 412 gaagggtgggtggagtttgctaagaagagcgtagctaaacgggttgcagatatgctaaat 471

                                                                   
Query: 189 ggtgaacaaataggtgggaagaagaggtcgtcattttattatgacatctggaacat 244
           || |||||||| || ||||| |||| ||| ||| | || ||||| || ||||||||
Sbjct: 472 ggagaacaaatcggggggaaaaagaagtcatcagtatactatgatatttggaacat 527
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>gb|AC161178.16| Mus musculus chromosome 1, clone RP23-9F16, complete sequence
          Length = 216182

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 256    ggaagttcaaatgggatgat 275
              ||||||||||||||||||||
Sbjct: 142893 ggaagttcaaatgggatgat 142912
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>ref|XM_632073.1| Dictyostelium discoideum hypothetical protein (DDB0187506), partial
           mRNA
          Length = 774

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 311 ggaacagaaattaacattgg 330
           ||||||||||||||||||||
Sbjct: 314 ggaacagaaattaacattgg 295
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>gb|AY313848.1| Vaccinia virus strain Acambis clone 3, complete genome
          Length = 197418

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 225   tattatgacatctggaacat 244
             ||||||||||||||||||||
Sbjct: 36809 tattatgacatctggaacat 36790
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>gb|AY313847.1| Vaccinia virus strain Acambis clone 2000, complete genome
          Length = 199234

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 225   tattatgacatctggaacat 244
             ||||||||||||||||||||
Sbjct: 36754 tattatgacatctggaacat 36735
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>gb|BT011791.1| Arabidopsis thaliana At3g56510 mRNA, complete cds
          Length = 774

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 92/116 (79%)
 Strand = Plus / Plus

                                                                       
Query: 129 gaagggtgggttgagtttgcaaagaaaagtgtcgccaagagggtggctaatttgcttaat 188
           ||||||||||| |||||||| ||||| || || || ||  |||| ||  || |||| |||
Sbjct: 313 gaagggtgggtggagtttgctaagaagagcgtagctaaacgggttgcagatatgctaaat 372

                                                                   
Query: 189 ggtgaacaaataggtgggaagaagaggtcgtcattttattatgacatctggaacat 244
           || |||||||| || ||||| |||| ||| ||| | || ||||| || ||||||||
Sbjct: 373 ggagaacaaatcggggggaaaaagaagtcatcagtatactatgatatttggaacat 428
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>gb|AC113198.15| Mus musculus chromosome 14, clone RP23-248E15, complete sequence
          Length = 236220

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 335   aacagctgcaaagaaacaac 354
             ||||||||||||||||||||
Sbjct: 16991 aacagctgcaaagaaacaac 16972
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>gb|BT010761.1| Arabidopsis thaliana At3g56510 gene, complete cds
          Length = 961

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 92/116 (79%)
 Strand = Plus / Plus

                                                                       
Query: 129 gaagggtgggttgagtttgcaaagaaaagtgtcgccaagagggtggctaatttgcttaat 188
           ||||||||||| |||||||| ||||| || || || ||  |||| ||  || |||| |||
Sbjct: 399 gaagggtgggtggagtttgctaagaagagcgtagctaaacgggttgcagatatgctaaat 458

                                                                   
Query: 189 ggtgaacaaataggtgggaagaagaggtcgtcattttattatgacatctggaacat 244
           || |||||||| || ||||| |||| ||| ||| | || ||||| || ||||||||
Sbjct: 459 ggagaacaaatcggggggaaaaagaagtcatcagtatactatgatatttggaacat 514
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>gb|AC121789.2| Mus musculus BAC clone RP23-398C14 from 1, complete sequence
          Length = 181157

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 135    tgggttgagtttgcaaagaa 154
              ||||||||||||||||||||
Sbjct: 176362 tgggttgagtttgcaaagaa 176381
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>gb|DQ377945.1| Vaccinia virus strain 3737, complete genome
          Length = 199377

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 225   tattatgacatctggaacat 244
             ||||||||||||||||||||
Sbjct: 39302 tattatgacatctggaacat 39283
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>gb|M35027.1|VACCG Vaccinia virus Copenhagen, complete genome
          Length = 191737

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 225   tattatgacatctggaacat 244
             ||||||||||||||||||||
Sbjct: 36934 tattatgacatctggaacat 36915
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>gb|AY243312.1| Vaccinia virus WR, complete genome
          Length = 194711

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 225   tattatgacatctggaacat 244
             ||||||||||||||||||||
Sbjct: 33863 tattatgacatctggaacat 33844
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>gb|AY766183.1| Vaccinia virus strain ACAM1000, partial sequence
          Length = 201404

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 225    tattatgacatctggaacat 244
              ||||||||||||||||||||
Sbjct: 163005 tattatgacatctggaacat 163024
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>emb|BX825854.1|CNS0A6HL Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL68ZC04 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 1009

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 92/116 (79%)
 Strand = Plus / Plus

                                                                       
Query: 129 gaagggtgggttgagtttgcaaagaaaagtgtcgccaagagggtggctaatttgcttaat 188
           ||||||||||| |||||||| ||||| || || || ||  |||| ||  || |||| |||
Sbjct: 363 gaagggtgggtggagtttgctaagaagagcgtagctaaacgggttgcagatatgctaaat 422

                                                                   
Query: 189 ggtgaacaaataggtgggaagaagaggtcgtcattttattatgacatctggaacat 244
           || |||||||| || ||||| |||| ||| ||| | || ||||| || ||||||||
Sbjct: 423 ggagaacaaatcggggggaaaaagaagtcatcagtatactatgatatttggaacat 478
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>gb|AC023157.38| Homo sapiens 12 BAC RP11-467L13 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 122351

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 306   atcagggaacagaaattaac 325
             ||||||||||||||||||||
Sbjct: 96946 atcagggaacagaaattaac 96965
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>gb|AC155246.1| Mus musculus BAC clone RP24-303C15 from 14, complete sequence
          Length = 151983

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 335    aacagctgcaaagaaacaac 354
              ||||||||||||||||||||
Sbjct: 139402 aacagctgcaaagaaacaac 139383
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>gb|AC139331.5| Mus musculus BAC clone RP24-189J10 from 1, complete sequence
          Length = 164850

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 135   tgggttgagtttgcaaagaa 154
             ||||||||||||||||||||
Sbjct: 67106 tgggttgagtttgcaaagaa 67125
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>gb|M19117.1|VACRRSSA Vaccinia virus ribonucleotide reductase, small subunit, complete
           cds
          Length = 1290

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 225 tattatgacatctggaacat 244
           ||||||||||||||||||||
Sbjct: 214 tattatgacatctggaacat 233
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>gb|M34368.1|VACFGENE Vaccinia virus F1L, F2L, F3L, F4L, F5L, F6L, F7L, F8L, and F9L mRNAs,
            complete cds
          Length = 6185

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 225  tattatgacatctggaacat 244
            ||||||||||||||||||||
Sbjct: 2728 tattatgacatctggaacat 2747
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>gb|M57774.1|VACCH8 Chinese vaccinia virus F1 segment DNA fragment
          Length = 1145

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 225 tattatgacatctggaacat 244
           ||||||||||||||||||||
Sbjct: 129 tattatgacatctggaacat 148


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,376,881
Number of Sequences: 3902068
Number of extensions: 3376881
Number of successful extensions: 60506
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 60438
Number of HSP's gapped (non-prelim): 71
length of query: 406
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 384
effective length of database: 17,147,199,772
effective search space: 6584524712448
effective search space used: 6584524712448
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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