ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags37n02 |
|---|---|
| Clone Library Name | barley_pub |
>COPZ1_BOVIN (P35604) Coatomer subunit zeta-1 (Zeta-1 coat protein) (Zeta-1 COP)| Length = 177 Score = 97.1 bits (240), Expect = 3e-20 Identities = 59/159 (37%), Positives = 85/159 (53%) Frame = +3 Query: 105 SVKNILLLDSEGKRVAVKYFSDDWPNNASRLTFEKSIFTKTLKTNARSEAEITLLDGNIV 284 +VK IL+LD++G R+ KY+ D +P+ + FEK+IF KT +T ++EI LL+G V Sbjct: 12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTHRT----DSEIALLEGLTV 67 Query: 285 VYKFVQDLHFFVTAGDDENELIIANVLQGFADSVGLLLRGDVEKRTAXXXXXXXXXXXXX 464 VYK DL+F+V ENEL++ VL DS+ +LR +VEKR Sbjct: 68 VYKSSIDLYFYVIGSSYENELMLMTVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDE 127 Query: 465 XXXXXXXXXTDANTIAGKVATNAADGSVPFSEQTISQAL 581 +D + +VA D VP +EQT+SQ L Sbjct: 128 IVDGGVILESDPQQVVHRVALRGED--VPLTEQTVSQVL 164
>COPZ1_PONPY (Q5R5F2) Coatomer subunit zeta-1 (Zeta-1 coat protein) (Zeta-1 COP)| Length = 177 Score = 96.3 bits (238), Expect = 6e-20 Identities = 59/159 (37%), Positives = 85/159 (53%) Frame = +3 Query: 105 SVKNILLLDSEGKRVAVKYFSDDWPNNASRLTFEKSIFTKTLKTNARSEAEITLLDGNIV 284 +VK IL+LD++G R+ KY+ D +P+ + FEK+IF KT +T ++EI LL+G V Sbjct: 12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTHRT----DSEIALLEGLTV 67 Query: 285 VYKFVQDLHFFVTAGDDENELIIANVLQGFADSVGLLLRGDVEKRTAXXXXXXXXXXXXX 464 VYK DL+F+V ENEL++ VL DS+ +LR +VEKR Sbjct: 68 VYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDE 127 Query: 465 XXXXXXXXXTDANTIAGKVATNAADGSVPFSEQTISQAL 581 +D + +VA D VP +EQT+SQ L Sbjct: 128 IVDGGVILESDPQQVVHRVALRGED--VPLTEQTVSQVL 164
>COPZ1_MOUSE (P61924) Coatomer subunit zeta-1 (Zeta-1 coat protein) (Zeta-1 COP)| Length = 177 Score = 96.3 bits (238), Expect = 6e-20 Identities = 59/159 (37%), Positives = 85/159 (53%) Frame = +3 Query: 105 SVKNILLLDSEGKRVAVKYFSDDWPNNASRLTFEKSIFTKTLKTNARSEAEITLLDGNIV 284 +VK IL+LD++G R+ KY+ D +P+ + FEK+IF KT +T ++EI LL+G V Sbjct: 12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTHRT----DSEIALLEGLTV 67 Query: 285 VYKFVQDLHFFVTAGDDENELIIANVLQGFADSVGLLLRGDVEKRTAXXXXXXXXXXXXX 464 VYK DL+F+V ENEL++ VL DS+ +LR +VEKR Sbjct: 68 VYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDE 127 Query: 465 XXXXXXXXXTDANTIAGKVATNAADGSVPFSEQTISQAL 581 +D + +VA D VP +EQT+SQ L Sbjct: 128 IVDGGVILESDPQQVVHRVALRGED--VPLTEQTVSQVL 164
>COPZ1_HUMAN (P61923) Coatomer subunit zeta-1 (Zeta-1 coat protein) (Zeta-1 COP)| Length = 177 Score = 96.3 bits (238), Expect = 6e-20 Identities = 59/159 (37%), Positives = 85/159 (53%) Frame = +3 Query: 105 SVKNILLLDSEGKRVAVKYFSDDWPNNASRLTFEKSIFTKTLKTNARSEAEITLLDGNIV 284 +VK IL+LD++G R+ KY+ D +P+ + FEK+IF KT +T ++EI LL+G V Sbjct: 12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTHRT----DSEIALLEGLTV 67 Query: 285 VYKFVQDLHFFVTAGDDENELIIANVLQGFADSVGLLLRGDVEKRTAXXXXXXXXXXXXX 464 VYK DL+F+V ENEL++ VL DS+ +LR +VEKR Sbjct: 68 VYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDE 127 Query: 465 XXXXXXXXXTDANTIAGKVATNAADGSVPFSEQTISQAL 581 +D + +VA D VP +EQT+SQ L Sbjct: 128 IVDGGVILESDPQQVVHRVALRGED--VPLTEQTVSQVL 164
>COPZ2_MOUSE (Q9JHH9) Coatomer subunit zeta-2 (Zeta-2 coat protein) (Zeta-2 COP)| Length = 205 Score = 84.7 bits (208), Expect = 2e-16 Identities = 50/167 (29%), Positives = 85/167 (50%) Frame = +3 Query: 81 EFSKESCPSVKNILLLDSEGKRVAVKYFSDDWPNNASRLTFEKSIFTKTLKTNARSEAEI 260 E + S ++K + +LD++G+R+ KY+ D +P+ ++ FEK++F KT +R+E+EI Sbjct: 32 EQREPSLYTIKAVFILDNDGRRLLAKYYDDTFPSVKEQMVFEKNVFNKT----SRTESEI 87 Query: 261 TLLDGNIVVYKFVQDLHFFVTAGDDENELIIANVLQGFADSVGLLLRGDVEKRTAXXXXX 440 L G +VYK D+ +V ENEL++ +VL DS+ +LR +VEKR Sbjct: 88 AFLGGMTIVYKSSIDIFLYVVGSSSENELMLMSVLACLFDSLSHILRKNVEKRWLLENMD 147 Query: 441 XXXXXXXXXXXXXXXXXTDANTIAGKVATNAADGSVPFSEQTISQAL 581 +D + KV D + +EQ+++Q L Sbjct: 148 GAFLVLDETVDGGVILESDPQQVIQKVNFRTDDSGL--TEQSVAQVL 192
>COPZ2_HUMAN (Q9P299) Coatomer subunit zeta-2 (Zeta-2 coat protein) (Zeta-2 COP)| Length = 210 Score = 84.3 bits (207), Expect = 2e-16 Identities = 49/159 (30%), Positives = 83/159 (52%) Frame = +3 Query: 105 SVKNILLLDSEGKRVAVKYFSDDWPNNASRLTFEKSIFTKTLKTNARSEAEITLLDGNIV 284 ++K + +LD++G+R+ KY+ D +P+ ++ FEK++F KT +R+E+EI G + Sbjct: 45 TIKAVFILDNDGRRLLAKYYDDTFPSMKEQMVFEKNVFNKT----SRTESEIAFFGGMTI 100 Query: 285 VYKFVQDLHFFVTAGDDENELIIANVLQGFADSVGLLLRGDVEKRTAXXXXXXXXXXXXX 464 VYK DL +V ENEL++ +VL +S+ +LR +VEKR Sbjct: 101 VYKNSIDLFLYVVGSSYENELMLMSVLTCLFESLNHMLRKNVEKRWLLENMDGAFLVLDE 160 Query: 465 XXXXXXXXXTDANTIAGKVATNAADGSVPFSEQTISQAL 581 +D + KV A DG + +EQ+++Q L Sbjct: 161 IVDGGVILESDPQQVIQKVNFRADDGGL--TEQSVAQVL 197
>COPZ_CAEEL (O17901) Probable coatomer subunit zeta (Zeta-coat protein)| (Zeta-COP) Length = 184 Score = 76.6 bits (187), Expect = 5e-14 Identities = 50/158 (31%), Positives = 79/158 (50%), Gaps = 1/158 (0%) Frame = +3 Query: 105 SVKNILLLDSEGKRVAVKYFS-DDWPNNASRLTFEKSIFTKTLKTNARSEAEITLLDGNI 281 S+K I++LD +G RV KY+ + + FEKS+F+KT + + A+I LLDG Sbjct: 13 SIKGIVILDQDGNRVLAKYYDRTTFGTVKEQKAFEKSLFSKTSRNTS---ADILLLDGVT 69 Query: 282 VVYKFVQDLHFFVTAGDDENELIIANVLQGFADSVGLLLRGDVEKRTAXXXXXXXXXXXX 461 +Y+ DL+F+V ENEL + L D+V ++LR +VEK+ Sbjct: 70 CLYRSNVDLYFYVLGSTRENELFLDATLTCLYDAVSVVLRKNVEKKALIDSMDTIMLIID 129 Query: 462 XXXXXXXXXXTDANTIAGKVATNAADGSVPFSEQTISQ 575 TDA + + A + + V FS+Q++SQ Sbjct: 130 EICDEGIIMETDAQAVVQRTALKSDE--VSFSDQSVSQ 165
>COPZ_SCHPO (O74891) Probable coatomer subunit zeta (Zeta-coat protein)| (Zeta-COP) Length = 190 Score = 62.4 bits (150), Expect = 9e-10 Identities = 38/115 (33%), Positives = 61/115 (53%), Gaps = 9/115 (7%) Frame = +3 Query: 105 SVKNILLLDSEGKRVAVKYFSDD---------WPNNASRLTFEKSIFTKTLKTNARSEAE 257 +V L+LDS GKR+ KY++ + + TFEK +F KT KT + + Sbjct: 7 AVNAFLILDSSGKRIFTKYYAPPHLKEGEGGVFNSVKEEKTFEKGLFEKTWKT----QND 62 Query: 258 ITLLDGNIVVYKFVQDLHFFVTAGDDENELIIANVLQGFADSVGLLLRGDVEKRT 422 I DG +VV V D+ F++ G +ENE+++ L+ D++ LL + +KRT Sbjct: 63 ILTYDGKLVVMLTVMDVIFYIVGGMEENEVMLYECLRSIRDALELLFKYVPDKRT 117
>COPZ_YEAST (P53600) Coatomer subunit zeta (Zeta-coat protein) (Zeta-COP)| Length = 189 Score = 57.8 bits (138), Expect = 2e-08 Identities = 38/156 (24%), Positives = 75/156 (48%), Gaps = 10/156 (6%) Frame = +3 Query: 87 SKESCPSVKNILLLDSEGKRVAVKYF-----SDD-----WPNNASRLTFEKSIFTKTLKT 236 S S +V+ +L+LD +G+R+ KY+ SD+ + + + FEK ++ KT K Sbjct: 2 SSLSLYTVQAVLILDQQGERIYAKYYQPPHRSDEGHQLLFNSVKKQKEFEKQLYRKTHK- 60 Query: 237 NARSEAEITLLDGNIVVYKFVQDLHFFVTAGDDENELIIANVLQGFADSVGLLLRGDVEK 416 ++EI + + ++V+YK D+ ++ A +ENE+++ ++ L+L ++K Sbjct: 61 ---QDSEILIFEDHLVLYKEYIDITIYLVASLEENEIVLQQGFSAIRGALDLILNSGMDK 117 Query: 417 RTAXXXXXXXXXXXXXXXXXXXXXXTDANTIAGKVA 524 + TD+NTIA +V+ Sbjct: 118 KNIQENYDMVLLAIDETIDNGVILETDSNTIASRVS 153
>EPSB1_RALSO (P58593) Putative tyrosine-protein kinase epsB (EC 2.7.10.2) (EPS I| polysaccharide export protein epsB) Length = 751 Score = 31.2 bits (69), Expect = 2.3 Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 1/54 (1%) Frame = +3 Query: 168 DDWPNNASRLTFE-KSIFTKTLKTNARSEAEITLLDGNIVVYKFVQDLHFFVTA 326 +D PN+A L + S+F +KT+A +E EI L +VV K V +LH ++TA Sbjct: 65 EDNPNSAKSLLGDVSSLFD--VKTDANAEIEI--LRSRMVVGKAVDNLHLYITA 114
>EPSB2_RALSO (Q45409) Putative tyrosine-protein kinase epsB (EC 2.7.10.2) (EPS I| polysaccharide export protein epsB) Length = 750 Score = 31.2 bits (69), Expect = 2.3 Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 1/54 (1%) Frame = +3 Query: 168 DDWPNNASRLTFE-KSIFTKTLKTNARSEAEITLLDGNIVVYKFVQDLHFFVTA 326 +D PN+A L + S+F +KT+A +E EI L +VV K V +LH ++TA Sbjct: 65 EDNPNSAKSLLGDVSSLFD--VKTDANAEIEI--LRSRMVVGKAVDNLHLYITA 114
>13S2_FAGES (O23880) 13S globulin seed storage protein 2 precursor| (Legumin-like protein 2) [Contains: 13S globulin seed storage protein 2 acidic chain; 13S globulin seed storage protein 2 basic chain] Length = 504 Score = 29.6 bits (65), Expect = 6.6 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 18/73 (24%) Frame = +3 Query: 258 ITLLDGNIVVYKFVQDLHFFVTAG------------------DDENELIIANVLQGFADS 383 +TLLD N + +++ F AG DD+ L+ AN+L GF D Sbjct: 191 VTLLDANSYHKQLDENVRSFFLAGQSQRETREEGSDRQSRESDDDEALLGANILSGFQDE 250 Query: 384 VGLLLRGDVEKRT 422 + L DV++ T Sbjct: 251 ILHELFRDVDRET 263
>F13A_RAT (O08619) Coagulation factor XIII A chain precursor (EC 2.3.2.13)| (Coagulation factor XIIIa) (Protein-glutamine gamma-glutamyltransferase A chain) (Transglutaminase A chain) Length = 731 Score = 29.6 bits (65), Expect = 6.6 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%) Frame = +3 Query: 189 SRLTFEKSIFTKTLKTNARSEAEITLLDGNIVVYKFVQDL-HFFVTAGDDENELIIA 356 S+ F+ F TL + + E+ + G + Y Q L HFFVTA +E +++A Sbjct: 564 SKKEFKTESFEVTLDPLSLEKKEVLIRAGEYMSYLLEQGLLHFFVTARINETRVVLA 620
>F13A_MOUSE (Q8BH61) Coagulation factor XIII A chain precursor (EC 2.3.2.13)| (Coagulation factor XIIIa) (Protein-glutamine gamma-glutamyltransferase A chain) (Transglutaminase A chain) Length = 731 Score = 29.6 bits (65), Expect = 6.6 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%) Frame = +3 Query: 189 SRLTFEKSIFTKTLKTNARSEAEITLLDGNIVVYKFVQD-LHFFVTAGDDENELIIA 356 S+ F+K F +TL + + E+ + G + + Q LHFFVTA +E+ ++A Sbjct: 564 SKKEFKKESFEETLDPFSSKKKEVLVRAGEYMSHLLEQGFLHFFVTARINESRDVLA 620
>CLPB2_CHLTE (Q8KA87) Probable chaperone clpB 2| Length = 442 Score = 29.3 bits (64), Expect = 8.6 Identities = 13/38 (34%), Positives = 22/38 (57%) Frame = +3 Query: 255 EITLLDGNIVVYKFVQDLHFFVTAGDDENELIIANVLQ 368 E+ DG +++ F+ +LH V AG E + AN+L+ Sbjct: 268 EVQASDGEVIL--FIDELHLLVGAGSAEGSMDAANILK 303
>AP3S1_MOUSE (Q9DCR2) AP-3 complex subunit sigma-1 (Adapter-related protein| complex 3 sigma-1 subunit) (Sigma-adaptin 3a) (AP-3 complex sigma-3A subunit) (Sigma-3A-adaptin) Length = 193 Score = 29.3 bits (64), Expect = 8.6 Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 11/104 (10%) Frame = +3 Query: 108 VKNILLLDSEGKRVAVKYF---SDDWPNNASRLTFEKSIFTKTLKTNARSEAEITLLDG- 275 +K IL+ ++ GK K++ S+D R TF + R E L+G Sbjct: 2 IKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHL--------VSKRDENVCNFLEGG 53 Query: 276 -------NIVVYKFVQDLHFFVTAGDDENELIIANVLQGFADSV 386 N ++Y+ L+F E+EL I +++Q F +++ Sbjct: 54 LLIGGSDNKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETL 97
>AP3S1_HUMAN (Q92572) AP-3 complex subunit sigma-1 (Adapter-related protein| complex 3 sigma-1 subunit) (Sigma-adaptin 3a) (AP-3 complex sigma-3A subunit) (Sigma-3A-adaptin) (Clathrin-associated/assembly/adapter protein, small 3) Length = 193 Score = 29.3 bits (64), Expect = 8.6 Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 11/104 (10%) Frame = +3 Query: 108 VKNILLLDSEGKRVAVKYF---SDDWPNNASRLTFEKSIFTKTLKTNARSEAEITLLDG- 275 +K IL+ ++ GK K++ S+D R TF + R E L+G Sbjct: 2 IKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHL--------VSKRDENVCNFLEGG 53 Query: 276 -------NIVVYKFVQDLHFFVTAGDDENELIIANVLQGFADSV 386 N ++Y+ L+F E+EL I +++Q F +++ Sbjct: 54 LLIGGSDNKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETL 97
>SUHW3_HUMAN (Q8ND82) Suppressor of hairy wing homolog 3| Length = 737 Score = 29.3 bits (64), Expect = 8.6 Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 1/80 (1%) Frame = -2 Query: 274 PSSNVISASERAFVFRVLVKMDFSKVNLDALFGQSSEKYFTA-TRFPSESSSKMFFTDGQ 98 P SN ++AS R F ++ K S V ++ +S+ FT ++ S++SS + F Q Sbjct: 97 PPSNPVAASPR---FHLVSKSSQSSVTVE----NASKPDFTKNSQVGSDNSSILLFDSTQ 149 Query: 97 DSLENSPMASFPPSQHLPPV 38 +SL PPSQ +P + Sbjct: 150 ESL--------PPSQDIPAI 161 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 71,195,419 Number of Sequences: 219361 Number of extensions: 1240789 Number of successful extensions: 3547 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 3427 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3531 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4986986160 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
