ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags38b22 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009075.1| Triticum aestivum clone wip1c.pk004.o24:fis, full insert mRNA sequence Length = 1777 Score = 208 bits (105), Expect = 4e-51 Identities = 133/143 (93%) Strand = Plus / Plus Query: 1 gatgcagcagctnnacttcagcgaggcaccatgggacgaggcagccggcttcgccctcac 60 |||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||| Sbjct: 1238 gatgcagcagctcgacttcagcgaggcgccatgggacgaggcagcctgcttcgccctcac 1297 Query: 61 caagtacccgtcctatgagatcgactgggactcgctcctcgccaccaattagcacccagt 120 |||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 1298 caagtacccgtcgtacgagatcgactgggactcgcttctcgccaccaattagcacccagt 1357 Query: 121 tcatcttcgtcagctactactac 143 | | |||||||||||||||||| Sbjct: 1358 ttgtgttcgtcagctactactac 1380
>gb|BT009243.1| Triticum aestivum clone wlk1.pk0014.f4:fis, full insert mRNA sequence Length = 1261 Score = 192 bits (97), Expect = 2e-46 Identities = 131/143 (91%) Strand = Plus / Plus Query: 1 gatgcagcagctnnacttcagcgaggcaccatgggacgaggcagccggcttcgccctcac 60 |||||||||||| ||||||||||||| |||||||| ||||||||| ||||||||||||| Sbjct: 728 gatgcagcagctcgacttcagcgaggcgccatgggatgaggcagcctgcttcgccctcac 787 Query: 61 caagtacccgtcctatgagatcgactgggactcgctcctcgccaccaattagcacccagt 120 |||||||||||| || |||||||||||||||||||| |||||| |||||||||||||||| Sbjct: 788 caagtacccgtcgtacgagatcgactgggactcgcttctcgccgccaattagcacccagt 847 Query: 121 tcatcttcgtcagctactactac 143 | | |||||||||||||||||| Sbjct: 848 ttgtgttcgtcagctactactac 870
>gb|BT008937.1| Triticum aestivum clone wdi1c.pk004.g19:fis, full insert mRNA sequence Length = 1771 Score = 192 bits (97), Expect = 2e-46 Identities = 131/143 (91%) Strand = Plus / Plus Query: 1 gatgcagcagctnnacttcagcgaggcaccatgggacgaggcagccggcttcgccctcac 60 |||||||||||| ||||||||||||| |||||||| ||||||||| ||||||||||||| Sbjct: 1184 gatgcagcagctcgacttcagcgaggcgccatgggatgaggcagcctgcttcgccctcac 1243 Query: 61 caagtacccgtcctatgagatcgactgggactcgctcctcgccaccaattagcacccagt 120 |||||||||||| || |||||||||||||||||||| |||||| |||||||||||||||| Sbjct: 1244 caagtacccgtcgtacgagatcgactgggactcgcttctcgccgccaattagcacccagt 1303 Query: 121 tcatcttcgtcagctactactac 143 | | |||||||||||||||||| Sbjct: 1304 ttgtgttcgtcagctactactac 1326
>gb|AY305028.1| Oryza sativa (japonica cultivar-group) DRE binding factor 2 (DBF2) mRNA, complete cds Length = 1403 Score = 155 bits (78), Expect = 5e-35 Identities = 106/116 (91%) Strand = Plus / Plus Query: 1 gatgcagcagctnnacttcagcgaggcaccatgggacgaggcagccggcttcgccctcac 60 |||||||||||| ||||||||||||| || ||||||||||| |||| |||||||||||| Sbjct: 1065 gatgcagcagctcgacttcagcgaggcgccgtgggacgaggccgccgccttcgccctcac 1124 Query: 61 caagtacccgtcctatgagatcgactgggactcgctcctcgccaccaattagcacc 116 ||||||||||||||| ||||||||||||||||| ||||||||| ||||||| |||| Sbjct: 1125 caagtacccgtcctacgagatcgactgggactccctcctcgccgccaattaacacc 1180
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 155 bits (78), Expect = 5e-35 Identities = 106/116 (91%) Strand = Plus / Plus Query: 1 gatgcagcagctnnacttcagcgaggcaccatgggacgaggcagccggcttcgccctcac 60 |||||||||||| ||||||||||||| || ||||||||||| |||| |||||||||||| Sbjct: 12163977 gatgcagcagctcgacttcagcgaggcgccgtgggacgaggccgccgccttcgccctcac 12164036 Query: 61 caagtacccgtcctatgagatcgactgggactcgctcctcgccaccaattagcacc 116 ||||||||||||||| ||||||||||||||||| ||||||||| ||||||| |||| Sbjct: 12164037 caagtacccgtcctacgagatcgactgggactccctcctcgccgccaattaacacc 12164092
>dbj|AP005580.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1759_F09 Length = 149501 Score = 155 bits (78), Expect = 5e-35 Identities = 106/116 (91%) Strand = Plus / Plus Query: 1 gatgcagcagctnnacttcagcgaggcaccatgggacgaggcagccggcttcgccctcac 60 |||||||||||| ||||||||||||| || ||||||||||| |||| |||||||||||| Sbjct: 75436 gatgcagcagctcgacttcagcgaggcgccgtgggacgaggccgccgccttcgccctcac 75495 Query: 61 caagtacccgtcctatgagatcgactgggactcgctcctcgccaccaattagcacc 116 ||||||||||||||| ||||||||||||||||| ||||||||| ||||||| |||| Sbjct: 75496 caagtacccgtcctacgagatcgactgggactccctcctcgccgccaattaacacc 75551
>dbj|AP005525.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0564H06 Length = 146823 Score = 155 bits (78), Expect = 5e-35 Identities = 106/116 (91%) Strand = Plus / Plus Query: 1 gatgcagcagctnnacttcagcgaggcaccatgggacgaggcagccggcttcgccctcac 60 |||||||||||| ||||||||||||| || ||||||||||| |||| |||||||||||| Sbjct: 98356 gatgcagcagctcgacttcagcgaggcgccgtgggacgaggccgccgccttcgccctcac 98415 Query: 61 caagtacccgtcctatgagatcgactgggactcgctcctcgccaccaattagcacc 116 ||||||||||||||| ||||||||||||||||| ||||||||| ||||||| |||| Sbjct: 98416 caagtacccgtcctacgagatcgactgggactccctcctcgccgccaattaacacc 98471
>dbj|AK061033.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-204-H09, full insert sequence Length = 1019 Score = 155 bits (78), Expect = 5e-35 Identities = 106/116 (91%) Strand = Plus / Plus Query: 1 gatgcagcagctnnacttcagcgaggcaccatgggacgaggcagccggcttcgccctcac 60 |||||||||||| ||||||||||||| || ||||||||||| |||| |||||||||||| Sbjct: 444 gatgcagcagctcgacttcagcgaggcgccgtgggacgaggccgccgccttcgccctcac 503 Query: 61 caagtacccgtcctatgagatcgactgggactcgctcctcgccaccaattagcacc 116 ||||||||||||||| ||||||||||||||||| ||||||||| ||||||| |||| Sbjct: 504 caagtacccgtcctacgagatcgactgggactccctcctcgccgccaattaacacc 559
>dbj|AK058899.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-008-A04, full insert sequence Length = 902 Score = 155 bits (78), Expect = 5e-35 Identities = 106/116 (91%) Strand = Plus / Plus Query: 1 gatgcagcagctnnacttcagcgaggcaccatgggacgaggcagccggcttcgccctcac 60 |||||||||||| ||||||||||||| || ||||||||||| |||| |||||||||||| Sbjct: 296 gatgcagcagctcgacttcagcgaggcgccgtgggacgaggccgccgccttcgccctcac 355 Query: 61 caagtacccgtcctatgagatcgactgggactcgctcctcgccaccaattagcacc 116 ||||||||||||||| ||||||||||||||||| ||||||||| ||||||| |||| Sbjct: 356 caagtacccgtcctacgagatcgactgggactccctcctcgccgccaattaacacc 411
>ref|XM_450677.1| Oryza sativa (japonica cultivar-group), mRNA Length = 876 Score = 153 bits (77), Expect = 2e-34 Identities = 102/111 (91%) Strand = Plus / Plus Query: 1 gatgcagcagctnnacttcagcgaggcaccatgggacgaggcagccggcttcgccctcac 60 |||||||||||| ||||||||||||| || ||||||||||| |||| |||||||||||| Sbjct: 765 gatgcagcagctcgacttcagcgaggcgccgtgggacgaggccgccgccttcgccctcac 824 Query: 61 caagtacccgtcctatgagatcgactgggactcgctcctcgccaccaatta 111 ||||||||||||||| ||||||||||||||||| ||||||||| ||||||| Sbjct: 825 caagtacccgtcctacgagatcgactgggactccctcctcgccgccaatta 875
>gb|BT023988.1| Zea mays clone EL01N0413B03 mRNA sequence Length = 1494 Score = 139 bits (70), Expect = 3e-30 Identities = 95/104 (91%) Strand = Plus / Plus Query: 1 gatgcagcagctnnacttcagcgaggcaccatgggacgaggcagccggcttcgccctcac 60 |||||||||||| ||||||||||||| || ||||||||||| ||||||||||| ||||| Sbjct: 775 gatgcagcagctggacttcagcgaggcgccgtgggacgaggccgccggcttcgcgctcac 834 Query: 61 caagtacccgtcctatgagatcgactgggactcgctcctcgcca 104 |||||||||||| || ||||||||||||||||| |||||||||| Sbjct: 835 caagtacccgtcgtacgagatcgactgggactccctcctcgcca 878
>ref|XM_507229.1| PREDICTED Oryza sativa (japonica cultivar-group), P0453D01.40 mRNA Length = 1657 Score = 91.7 bits (46), Expect = 6e-16 Identities = 83/96 (86%) Strand = Plus / Plus Query: 1 gatgcagcagctnnacttcagcgaggcaccatgggacgaggcagccggcttcgccctcac 60 |||| ||||||| |||||||||||| || ||||||||||| | || ||||| ||||| Sbjct: 1225 gatggagcagctggacttcagcgaggtgccgtgggacgaggcggaggggttcgcgctcac 1284 Query: 61 caagtacccgtcctatgagatcgactgggactcgct 96 |||||||||||| || |||||||||||||||||||| Sbjct: 1285 caagtacccgtcgtacgagatcgactgggactcgct 1320
>ref|XM_482344.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1652 Score = 91.7 bits (46), Expect = 6e-16 Identities = 83/96 (86%) Strand = Plus / Plus Query: 1 gatgcagcagctnnacttcagcgaggcaccatgggacgaggcagccggcttcgccctcac 60 |||| ||||||| |||||||||||| || ||||||||||| | || ||||| ||||| Sbjct: 1227 gatggagcagctggacttcagcgaggtgccgtgggacgaggcggaggggttcgcgctcac 1286 Query: 61 caagtacccgtcctatgagatcgactgggactcgct 96 |||||||||||| || |||||||||||||||||||| Sbjct: 1287 caagtacccgtcgtacgagatcgactgggactcgct 1322
>gb|AY297448.1| Oryza sativa (japonica cultivar-group) AP2-domain DRE binding factor DBF1 mRNA, complete cds Length = 926 Score = 91.7 bits (46), Expect = 6e-16 Identities = 83/96 (86%) Strand = Plus / Plus Query: 1 gatgcagcagctnnacttcagcgaggcaccatgggacgaggcagccggcttcgccctcac 60 |||| ||||||| |||||||||||| || ||||||||||| | || ||||| ||||| Sbjct: 797 gatggagcagctggacttcagcgaggtgccgtgggacgaggcggaggggttcgcgctcac 856 Query: 61 caagtacccgtcctatgagatcgactgggactcgct 96 |||||||||||| || |||||||||||||||||||| Sbjct: 857 caagtacccgtcgtacgagatcgactgggactcgct 892
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 91.7 bits (46), Expect = 6e-16 Identities = 83/96 (86%) Strand = Plus / Plus Query: 1 gatgcagcagctnnacttcagcgaggcaccatgggacgaggcagccggcttcgccctcac 60 |||| ||||||| |||||||||||| || ||||||||||| | || ||||| ||||| Sbjct: 19541312 gatggagcagctggacttcagcgaggtgccgtgggacgaggcggaggggttcgcgctcac 19541371 Query: 61 caagtacccgtcctatgagatcgactgggactcgct 96 |||||||||||| || |||||||||||||||||||| Sbjct: 19541372 caagtacccgtcgtacgagatcgactgggactcgct 19541407
>dbj|AP004658.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0042B03 Length = 167669 Score = 91.7 bits (46), Expect = 6e-16 Identities = 83/96 (86%) Strand = Plus / Plus Query: 1 gatgcagcagctnnacttcagcgaggcaccatgggacgaggcagccggcttcgccctcac 60 |||| ||||||| |||||||||||| || ||||||||||| | || ||||| ||||| Sbjct: 16872 gatggagcagctggacttcagcgaggtgccgtgggacgaggcggaggggttcgcgctcac 16931 Query: 61 caagtacccgtcctatgagatcgactgggactcgct 96 |||||||||||| || |||||||||||||||||||| Sbjct: 16932 caagtacccgtcgtacgagatcgactgggactcgct 16967
>dbj|AP004691.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0453D01 Length = 147461 Score = 91.7 bits (46), Expect = 6e-16 Identities = 83/96 (86%) Strand = Plus / Plus Query: 1 gatgcagcagctnnacttcagcgaggcaccatgggacgaggcagccggcttcgccctcac 60 |||| ||||||| |||||||||||| || ||||||||||| | || ||||| ||||| Sbjct: 136069 gatggagcagctggacttcagcgaggtgccgtgggacgaggcggaggggttcgcgctcac 136128 Query: 61 caagtacccgtcctatgagatcgactgggactcgct 96 |||||||||||| || |||||||||||||||||||| Sbjct: 136129 caagtacccgtcgtacgagatcgactgggactcgct 136164
>dbj|AK105725.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-G08, full insert sequence Length = 1652 Score = 91.7 bits (46), Expect = 6e-16 Identities = 83/96 (86%) Strand = Plus / Plus Query: 1 gatgcagcagctnnacttcagcgaggcaccatgggacgaggcagccggcttcgccctcac 60 |||| ||||||| |||||||||||| || ||||||||||| | || ||||| ||||| Sbjct: 1227 gatggagcagctggacttcagcgaggtgccgtgggacgaggcggaggggttcgcgctcac 1286 Query: 61 caagtacccgtcctatgagatcgactgggactcgct 96 |||||||||||| || |||||||||||||||||||| Sbjct: 1287 caagtacccgtcgtacgagatcgactgggactcgct 1322
>dbj|AK068312.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013151K12, full insert sequence Length = 1657 Score = 91.7 bits (46), Expect = 6e-16 Identities = 83/96 (86%) Strand = Plus / Plus Query: 1 gatgcagcagctnnacttcagcgaggcaccatgggacgaggcagccggcttcgccctcac 60 |||| ||||||| |||||||||||| || ||||||||||| | || ||||| ||||| Sbjct: 1224 gatggagcagctggacttcagcgaggtgccgtgggacgaggcggaggggttcgcgctcac 1283 Query: 61 caagtacccgtcctatgagatcgactgggactcgct 96 |||||||||||| || |||||||||||||||||||| Sbjct: 1284 caagtacccgtcgtacgagatcgactgggactcgct 1319
>gb|AY823556.1| Pennisetum glaucum DRE binding factor mRNA, partial cds Length = 489 Score = 56.0 bits (28), Expect = 3e-05 Identities = 40/44 (90%) Strand = Plus / Plus Query: 61 caagtacccgtcctatgagatcgactgggactcgctcctcgcca 104 ||||||||||||||| ||||||||||||||| | || ||||||| Sbjct: 186 caagtacccgtcctacgagatcgactgggacgccctgctcgcca 229
>gb|BT018732.1| Zea mays clone EL01N0519G04.d mRNA sequence Length = 1550 Score = 56.0 bits (28), Expect = 3e-05 Identities = 34/36 (94%) Strand = Plus / Plus Query: 61 caagtacccgtcctatgagatcgactgggactcgct 96 ||||||||||||||| ||||||||||||||| |||| Sbjct: 1226 caagtacccgtcctacgagatcgactgggacgcgct 1261
>gb|AF493800.1| Zea mays DRE binding factor 1 (dbf1) mRNA, complete cds Length = 1042 Score = 56.0 bits (28), Expect = 3e-05 Identities = 34/36 (94%) Strand = Plus / Plus Query: 61 caagtacccgtcctatgagatcgactgggactcgct 96 ||||||||||||||| ||||||||||||||| |||| Sbjct: 720 caagtacccgtcctacgagatcgactgggacgcgct 755
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 54.0 bits (27), Expect = 1e-04 Identities = 61/71 (85%), Gaps = 1/71 (1%) Strand = Plus / Plus Query: 15 acttcagcgaggcaccatgggacgaggcagccggcttcgccctcaccaagtacccgtcct 74 |||||||||||||||| |||| |||| | || | ||||||| | | |||||||||||||| Sbjct: 17214920 acttcagcgaggcaccgtggggcgagtctgctgccttcgcc-taaacaagtacccgtcct 17214978 Query: 75 atgagatcgac 85 | ||||||||| Sbjct: 17214979 acgagatcgac 17214989
>gb|AC145386.1| Oryza sativa chromosome 3 BAC OSJNBb0028K20 genomic sequence, complete sequence Length = 115326 Score = 54.0 bits (27), Expect = 1e-04 Identities = 61/71 (85%), Gaps = 1/71 (1%) Strand = Plus / Plus Query: 15 acttcagcgaggcaccatgggacgaggcagccggcttcgccctcaccaagtacccgtcct 74 |||||||||||||||| |||| |||| | || | ||||||| | | |||||||||||||| Sbjct: 47664 acttcagcgaggcaccgtggggcgagtctgctgccttcgcc-taaacaagtacccgtcct 47722 Query: 75 atgagatcgac 85 | ||||||||| Sbjct: 47723 acgagatcgac 47733
>gb|AC137992.2| Oryza sativa chromosome 3 BAC OSJNBb0056B16 genomic sequence, complete sequence Length = 153247 Score = 54.0 bits (27), Expect = 1e-04 Identities = 61/71 (85%), Gaps = 1/71 (1%) Strand = Plus / Plus Query: 15 acttcagcgaggcaccatgggacgaggcagccggcttcgccctcaccaagtacccgtcct 74 |||||||||||||||| |||| |||| | || | ||||||| | | |||||||||||||| Sbjct: 106313 acttcagcgaggcaccgtggggcgagtctgctgccttcgcc-taaacaagtacccgtcct 106371 Query: 75 atgagatcgac 85 | ||||||||| Sbjct: 106372 acgagatcgac 106382
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 54.0 bits (27), Expect = 1e-04 Identities = 61/71 (85%), Gaps = 1/71 (1%) Strand = Plus / Plus Query: 15 acttcagcgaggcaccatgggacgaggcagccggcttcgccctcaccaagtacccgtcct 74 |||||||||||||||| |||| |||| | || | ||||||| | | |||||||||||||| Sbjct: 17208489 acttcagcgaggcaccgtggggcgagtctgctgccttcgcc-taaacaagtacccgtcct 17208547 Query: 75 atgagatcgac 85 | ||||||||| Sbjct: 17208548 acgagatcgac 17208558
>ref|XM_467836.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1393 Score = 50.1 bits (25), Expect = 0.002 Identities = 31/33 (93%) Strand = Plus / Plus Query: 61 caagtacccgtcctatgagatcgactgggactc 93 |||||||||||||| ||||||||||||||||| Sbjct: 1007 caagtacccgtcctgggagatcgactgggactc 1039
>ref|XM_506975.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1288_G09.10 mRNA Length = 1654 Score = 50.1 bits (25), Expect = 0.002 Identities = 31/33 (93%) Strand = Plus / Plus Query: 61 caagtacccgtcctatgagatcgactgggactc 93 |||||||||||||| ||||||||||||||||| Sbjct: 1249 caagtacccgtcctgggagatcgactgggactc 1281
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 50.1 bits (25), Expect = 0.002 Identities = 31/33 (93%) Strand = Plus / Plus Query: 61 caagtacccgtcctatgagatcgactgggactc 93 |||||||||||||| ||||||||||||||||| Sbjct: 31668495 caagtacccgtcctgggagatcgactgggactc 31668527
>dbj|AP004119.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1288_G09 Length = 109672 Score = 50.1 bits (25), Expect = 0.002 Identities = 31/33 (93%) Strand = Plus / Plus Query: 61 caagtacccgtcctatgagatcgactgggactc 93 |||||||||||||| ||||||||||||||||| Sbjct: 48282 caagtacccgtcctgggagatcgactgggactc 48314
>dbj|AK105991.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-H01, full insert sequence Length = 1393 Score = 50.1 bits (25), Expect = 0.002 Identities = 31/33 (93%) Strand = Plus / Plus Query: 61 caagtacccgtcctatgagatcgactgggactc 93 |||||||||||||| ||||||||||||||||| Sbjct: 1007 caagtacccgtcctgggagatcgactgggactc 1039
>dbj|AK105877.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-C05, full insert sequence Length = 1654 Score = 50.1 bits (25), Expect = 0.002 Identities = 31/33 (93%) Strand = Plus / Plus Query: 61 caagtacccgtcctatgagatcgactgggactc 93 |||||||||||||| ||||||||||||||||| Sbjct: 1249 caagtacccgtcctgggagatcgactgggactc 1281
>ref|NM_196118.1| Oryza sativa (japonica cultivar-group) putative AP2-domain transcriptional regulator (OJ1208D02.13), mRNA Length = 966 Score = 48.1 bits (24), Expect = 0.008 Identities = 43/50 (86%) Strand = Plus / Plus Query: 5 cagcagctnnacttcagcgaggcaccatgggacgaggcagccggcttcgc 54 |||||||| |||||| ||||| |||||||||||||| | ||||||||| Sbjct: 865 cagcagctggacttcacggaggcgccatgggacgaggccgacggcttcgc 914
>gb|AC134516.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OJA1208D02, complete sequence Length = 131922 Score = 48.1 bits (24), Expect = 0.008 Identities = 43/50 (86%) Strand = Plus / Plus Query: 5 cagcagctnnacttcagcgaggcaccatgggacgaggcagccggcttcgc 54 |||||||| |||||| ||||| |||||||||||||| | ||||||||| Sbjct: 24747 cagcagctggacttcacggaggcgccatgggacgaggccgacggcttcgc 24796
>gb|AC107314.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone OJ1208D02 from chromosome 10, complete sequence Length = 120132 Score = 48.1 bits (24), Expect = 0.008 Identities = 43/50 (86%) Strand = Plus / Plus Query: 5 cagcagctnnacttcagcgaggcaccatgggacgaggcagccggcttcgc 54 |||||||| |||||| ||||| |||||||||||||| | ||||||||| Sbjct: 84879 cagcagctggacttcacggaggcgccatgggacgaggccgacggcttcgc 84928
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 48.1 bits (24), Expect = 0.008 Identities = 43/50 (86%) Strand = Plus / Plus Query: 5 cagcagctnnacttcagcgaggcaccatgggacgaggcagccggcttcgc 54 |||||||| |||||| ||||| |||||||||||||| | ||||||||| Sbjct: 11216759 cagcagctggacttcacggaggcgccatgggacgaggccgacggcttcgc 11216808
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 48.1 bits (24), Expect = 0.008 Identities = 43/50 (86%) Strand = Plus / Plus Query: 5 cagcagctnnacttcagcgaggcaccatgggacgaggcagccggcttcgc 54 |||||||| |||||| ||||| |||||||||||||| | ||||||||| Sbjct: 11223199 cagcagctggacttcacggaggcgccatgggacgaggccgacggcttcgc 11223248
>gb|AY104042.1| Zea mays PCO094376 mRNA sequence Length = 918 Score = 44.1 bits (22), Expect = 0.13 Identities = 28/30 (93%) Strand = Plus / Plus Query: 61 caagtacccgtcctatgagatcgactggga 90 |||||||||||||| |||||||||||||| Sbjct: 489 caagtacccgtcctgggagatcgactggga 518
>emb|AJ007744.1|TSE007744 Thauera selenatis serA, serB, serD and serC genes Length = 8213 Score = 42.1 bits (21), Expect = 0.52 Identities = 21/21 (100%) Strand = Plus / Plus Query: 44 gccggcttcgccctcaccaag 64 ||||||||||||||||||||| Sbjct: 8148 gccggcttcgccctcaccaag 8168
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 42.1 bits (21), Expect = 0.52 Identities = 21/21 (100%) Strand = Plus / Plus Query: 134 ctactactaccagtaccgtct 154 ||||||||||||||||||||| Sbjct: 2353859 ctactactaccagtaccgtct 2353879
>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome Length = 3814139 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 51 tcgccctcaccaagtaccc 69 ||||||||||||||||||| Sbjct: 3696744 tcgccctcaccaagtaccc 3696762
>emb|AL139092.12| Human DNA sequence from clone RP11-420G6 on chromosome 6 Contains the gene for werners helicase interacting protein (WHIP) (RUVBL), the SERPINB1 gene for serine (or cysteine) proteinase inhibitor clade B (ovalbumin) member 1, a putative novel gene and the 3' end of a putative novel gene, complete sequence Length = 168147 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 27 caccatgggacgaggcagc 45 ||||||||||||||||||| Sbjct: 166319 caccatgggacgaggcagc 166337
>emb|BX119998.12| Zebrafish DNA sequence from clone CH211-194M11 in linkage group 10, complete sequence Length = 137763 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 95 ctcctcgccaccaattagc 113 ||||||||||||||||||| Sbjct: 109048 ctcctcgccaccaattagc 109066
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 116 ccagttcatcttcgtcagc 134 ||||||||||||||||||| Sbjct: 6513924 ccagttcatcttcgtcagc 6513906 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 666,662 Number of Sequences: 3902068 Number of extensions: 666662 Number of successful extensions: 42434 Number of sequences better than 10.0: 44 Number of HSP's better than 10.0 without gapping: 44 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 42137 Number of HSP's gapped (non-prelim): 293 length of query: 166 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 144 effective length of database: 17,147,199,772 effective search space: 2469196767168 effective search space used: 2469196767168 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
