ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags37m13 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_191284.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1170 Score = 91.7 bits (46), Expect = 2e-15 Identities = 124/150 (82%) Strand = Plus / Plus Query: 20 aatgagttgaaagacgtgaagaaaaggactgttgtggtggaaaatctacccctggatttc 79 ||||| ||||| || || |||||||||| || |||||||||||||| || |||||| Sbjct: 511 aatgaattgaatgatgttaagaaaaggatagtcgtggtggaaaatctgccttctgatttc 570 Query: 80 tccctggagagtttacaggagaaatttggatcagttggcaaaattatgaagataaccatt 139 ||| |||| || |||| | |||||||| | ||||||| |||||| ||||||||||||| Sbjct: 571 tccatggaaagcatacatgcgaaatttgaaacagttgggaaaattgcgaagataaccatt 630 Query: 140 catgatccacatgcagttggagaatctgca 169 ||||||| |||| |||| |||||||||||| Sbjct: 631 catgatcaacattcagtgggagaatctgca 660 Score = 60.0 bits (30), Expect = 9e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 329 ggatcaggaaagcatatccagtcttcgaaagaaaatca 366 |||||||||||||||| ||||||||| ||||||||||| Sbjct: 766 ggatcaggaaagcataaccagtcttcaaaagaaaatca 803
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 61.9 bits (31), Expect = 2e-06 Identities = 40/43 (93%) Strand = Plus / Minus Query: 127 gaagataaccattcatgatccacatgcagttggagaatctgca 169 |||||||||||||||||||| |||| |||| |||||||||||| Sbjct: 31733468 gaagataaccattcatgatcaacattcagtgggagaatctgca 31733426 Score = 60.0 bits (30), Expect = 9e-06 Identities = 36/38 (94%) Strand = Plus / Minus Query: 329 ggatcaggaaagcatatccagtcttcgaaagaaaatca 366 |||||||||||||||| ||||||||| ||||||||||| Sbjct: 31732874 ggatcaggaaagcataaccagtcttcaaaagaaaatca 31732837
>dbj|AP003375.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1414_E05 Length = 105222 Score = 61.9 bits (31), Expect = 2e-06 Identities = 40/43 (93%) Strand = Plus / Minus Query: 127 gaagataaccattcatgatccacatgcagttggagaatctgca 169 |||||||||||||||||||| |||| |||| |||||||||||| Sbjct: 11506 gaagataaccattcatgatcaacattcagtgggagaatctgca 11464 Score = 60.0 bits (30), Expect = 9e-06 Identities = 36/38 (94%) Strand = Plus / Minus Query: 329 ggatcaggaaagcatatccagtcttcgaaagaaaatca 366 |||||||||||||||| ||||||||| ||||||||||| Sbjct: 10912 ggatcaggaaagcataaccagtcttcaaaagaaaatca 10875
>dbj|AP003268.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0503C12 Length = 147180 Score = 60.0 bits (30), Expect = 9e-06 Identities = 36/38 (94%) Strand = Plus / Minus Query: 329 ggatcaggaaagcatatccagtcttcgaaagaaaatca 366 |||||||||||||||| ||||||||| ||||||||||| Sbjct: 146606 ggatcaggaaagcataaccagtcttcaaaagaaaatca 146569
>dbj|AK105125.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-101-E01, full insert sequence Length = 748 Score = 60.0 bits (30), Expect = 9e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 329 ggatcaggaaagcatatccagtcttcgaaagaaaatca 366 |||||||||||||||| ||||||||| ||||||||||| Sbjct: 55 ggatcaggaaagcataaccagtcttcaaaagaaaatca 92
>ref|NM_180810.1| Arabidopsis thaliana RNA binding / nucleic acid binding AT5G46250 transcript variant AT5G46250.1 mRNA, complete cds Length = 1561 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 207 tacatgccattgttgagtatgaagcggtggaggcagctga 246 |||||||| |||| ||||||||| |||||||||||||||| Sbjct: 810 tacatgcctttgtggagtatgaaacggtggaggcagctga 849
>ref|NM_123994.3| Arabidopsis thaliana RNA binding / nucleic acid binding AT5G46250 transcript variant AT5G46250.2 mRNA, complete cds Length = 1565 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 207 tacatgccattgttgagtatgaagcggtggaggcagctga 246 |||||||| |||| ||||||||| |||||||||||||||| Sbjct: 820 tacatgcctttgtggagtatgaaacggtggaggcagctga 859
>gb|BT000588.1| Arabidopsis thaliana RNA-binding protein (At5g46250/MPL12_3) mRNA, complete cds Length = 1269 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 207 tacatgccattgttgagtatgaagcggtggaggcagctga 246 |||||||| |||| ||||||||| |||||||||||||||| Sbjct: 740 tacatgcctttgtggagtatgaaacggtggaggcagctga 779
>gb|AY050403.1| Arabidopsis thaliana AT5g46250/MPL12_3 mRNA, complete cds Length = 1558 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 207 tacatgccattgttgagtatgaagcggtggaggcagctga 246 |||||||| |||| ||||||||| |||||||||||||||| Sbjct: 810 tacatgcctttgtggagtatgaaacggtggaggcagctga 849
>emb|BX831009.1|CNS0A09S Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS49ZA11 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1416 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 207 tacatgccattgttgagtatgaagcggtggaggcagctga 246 |||||||| |||| ||||||||| |||||||||||||||| Sbjct: 796 tacatgcctttgtggagtatgaaacggtggaggcagctga 835
>emb|BX830134.1|CNS09ZXU Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB61ZF04 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1497 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 207 tacatgccattgttgagtatgaagcggtggaggcagctga 246 |||||||| |||| ||||||||| |||||||||||||||| Sbjct: 806 tacatgcctttgtggagtatgaaacggtggaggcagctga 845
>dbj|AB010698.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MPL12 Length = 87434 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 207 tacatgccattgttgagtatgaagcggtggaggcagctga 246 |||||||| |||| ||||||||| |||||||||||||||| Sbjct: 16139 tacatgcctttgtggagtatgaaacggtggaggcagctga 16178
>gb|AC137924.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0095K08, complete sequence Length = 180999 Score = 54.0 bits (27), Expect = 5e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 266 aatgatgagaggaactggagaactgggatgagagt 300 |||||||||||||||||||||| |||| ||||||| Sbjct: 57295 aatgatgagaggaactggagaaatgggctgagagt 57329
>gb|AC146948.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone P0782F03 map near S2137, complete sequence Length = 197516 Score = 54.0 bits (27), Expect = 5e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 266 aatgatgagaggaactggagaactgggatgagagt 300 |||||||||||||||||||||| |||| ||||||| Sbjct: 21529 aatgatgagaggaactggagaaatgggctgagagt 21495
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 54.0 bits (27), Expect = 5e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 266 aatgatgagaggaactggagaactgggatgagagt 300 |||||||||||||||||||||| |||| ||||||| Sbjct: 7940653 aatgatgagaggaactggagaaatgggctgagagt 7940619
>emb|BX831286.1|CNS09ZIB Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS75ZE02 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1441 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 208 acatgccattgttgagtatgaagcggtggaggcagctga 246 ||||||| |||| ||||||||| |||||||||||||||| Sbjct: 706 acatgcctttgtggagtatgaaacggtggaggcagctga 744
>dbj|AK107293.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-126-C01, full insert sequence Length = 1402 Score = 54.0 bits (27), Expect = 5e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 266 aatgatgagaggaactggagaactgggatgagagt 300 |||||||||||||||||||||| |||| ||||||| Sbjct: 478 aatgatgagaggaactggagaaatgggctgagagt 512
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 54.0 bits (27), Expect = 5e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 266 aatgatgagaggaactggagaactgggatgagagt 300 |||||||||||||||||||||| |||| ||||||| Sbjct: 8010740 aatgatgagaggaactggagaaatgggctgagagt 8010706
>ref|XM_362882.1| Magnaporthe grisea 70-15 hypothetical protein (MG08555.4) partial cds Length = 1785 Score = 48.1 bits (24), Expect = 0.032 Identities = 24/24 (100%) Strand = Plus / Minus Query: 170 gcatcaaagaagcctgacttcatg 193 |||||||||||||||||||||||| Sbjct: 632 gcatcaaagaagcctgacttcatg 609
>gb|AY108148.1| Zea mays PCO133047 mRNA sequence Length = 1224 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 266 aatgatgagaggaactggagaactggg 292 |||||||||||||||||||||| |||| Sbjct: 303 aatgatgagaggaactggagaagtggg 329
>ref|XM_865001.1| PREDICTED: Bos taurus similar to 40S ribosomal protein SA (p40) (34/67 kDa laminin receptor) (LOC613839), mRNA Length = 483 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 235 ggaggcagctgagaaggctgtg 256 |||||||||||||||||||||| Sbjct: 402 ggaggcagctgagaaggctgtg 423
>gb|CP000302.1| Shewanella denitrificans OS217, complete genome Length = 4545906 Score = 44.1 bits (22), Expect = 0.51 Identities = 25/26 (96%) Strand = Plus / Minus Query: 510 tgcgccaacaccaaaggacaaatgct 535 |||||||||||||||||| ||||||| Sbjct: 4244160 tgcgccaacaccaaaggataaatgct 4244135 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 36 tgaagaaaaggactgttgtggtgg 59 ||||||||||||||| |||||||| Sbjct: 3939601 tgaagaaaaggactgatgtggtgg 3939624
>dbj|AK017309.1| Mus musculus 6 days neonate head cDNA, RIKEN full-length enriched library, clone:5430414H02 product:peroxisome biogenesis factor 1, full insert sequence Length = 1850 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 547 caaaggcagatacaggagccaa 568 |||||||||||||||||||||| Sbjct: 1232 caaaggcagatacaggagccaa 1253
>gb|AC087828.6| Homo sapiens chromosome 15, clone RP11-292P13, complete sequence Length = 185324 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 515 caacaccaaaggacaaatgct 535 ||||||||||||||||||||| Sbjct: 162187 caacaccaaaggacaaatgct 162207
>emb|AL133481.14| Human DNA sequence from clone RP11-342M3 on chromosome 10 Contains the 3' end of the PPIF gene for peptidylprolyl isomerase F (cyclophilin F), gene FLJ90798, the EIF5AP1 pseudogene for eukaryotic translation initiation factor 5A pseudogene 1, a novel gene, a novel pseudogene and a CpG island, complete sequence Length = 167234 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 558 acaggagccaagggcatggct 578 ||||||||||||||||||||| Sbjct: 66079 acaggagccaagggcatggct 66059
>gb|AC120778.2| Homo sapiens chromosome 15 clone CTD-2163N2 map 15q21.1, complete sequence Length = 113282 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 515 caacaccaaaggacaaatgct 535 ||||||||||||||||||||| Sbjct: 52275 caacaccaaaggacaaatgct 52295
>gb|AC091245.2| Homo sapiens chromosome 15 clone RP11-456H13 map 15q15, complete sequence Length = 194311 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 515 caacaccaaaggacaaatgct 535 ||||||||||||||||||||| Sbjct: 117045 caacaccaaaggacaaatgct 117065
>gb|AC018901.8| Homo sapiens chromosome 15 clone RP11-292P13 map 15q15, complete sequence Length = 199503 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 515 caacaccaaaggacaaatgct 535 ||||||||||||||||||||| Sbjct: 176366 caacaccaaaggacaaatgct 176386
>gb|AC160090.4| Mus musculus 6 BAC RP23-322E20 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 206093 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 243 ctgagaaggctgtggccacct 263 ||||||||||||||||||||| Sbjct: 31943 ctgagaaggctgtggccacct 31963
>gb|AC154004.7| Mus musculus 6 BAC RP24-169F24 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 168376 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 243 ctgagaaggctgtggccacct 263 ||||||||||||||||||||| Sbjct: 128826 ctgagaaggctgtggccacct 128846
>emb|AL929404.19| Mouse DNA sequence from clone RP23-71H9 on chromosome 2, complete sequence Length = 187610 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 271 tgagaggaactggagaactgg 291 ||||||||||||||||||||| Sbjct: 90586 tgagaggaactggagaactgg 90566
>gb|AC154001.5| Mus musculus 6 BAC RP24-419M4 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 183830 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 243 ctgagaaggctgtggccacct 263 ||||||||||||||||||||| Sbjct: 9670 ctgagaaggctgtggccacct 9650
>gb|AC140300.3| Mus musculus BAC clone RP23-373O10 from chromosome 17, complete sequence Length = 189769 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 556 atacaggagccaagggcatg 575 |||||||||||||||||||| Sbjct: 65656 atacaggagccaagggcatg 65637
>gb|AC128739.4| Mus musculus BAC clone RP24-168G14 from chromosome 19, complete sequence Length = 195342 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 486 actgtgatgttaaccatgaggaag 509 ||||||||||||| |||||||||| Sbjct: 133702 actgtgatgttaatcatgaggaag 133725
>emb|AM048875.1| Lily mottle virus complete genome, genomic RNA, isolate SMi Length = 9648 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 241 agctgagaaggctgtggccacctt 264 ||||||||||||| |||||||||| Sbjct: 348 agctgagaaggctttggccacctt 325
>emb|AL358216.33| Human DNA sequence from clone RP11-809C18 on chromosome 10 Contains two novel genes, the gene for a novel protein (FLJ38694 FLJ38681) and five CpG islands, complete sequence Length = 96891 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 239 gcagctgagaaggctgtggc 258 |||||||||||||||||||| Sbjct: 10139 gcagctgagaaggctgtggc 10158
>emb|AL022397.1|HS11C7 Human DNA sequence from clone CTA-11C7 on chromosome 1q32.1-32.3 Contains part of the SYT14 gene for synaptotagmin XIV, complete sequence Length = 109302 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 ttcatgatccacatgcagtt 157 |||||||||||||||||||| Sbjct: 18296 ttcatgatccacatgcagtt 18315
>gb|AC160340.2| Mus musculus BAC clone RP23-436E24 from chromosome 12, complete sequence Length = 209911 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 57 tggaaaatctacccctggat 76 |||||||||||||||||||| Sbjct: 81849 tggaaaatctacccctggat 81830
>gb|AC155814.6| Mus musculus BAC clone RP24-137M22 from chromosome 8, complete sequence Length = 191336 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 451 ttcaggagaggttgcttcag 470 |||||||||||||||||||| Sbjct: 55990 ttcaggagaggttgcttcag 56009
>gb|AC010583.5|AC010583 Homo sapiens chromosome 11 clone RP11-61J24, complete sequence Length = 184569 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 aggcagctgagaaggctgtg 256 |||||||||||||||||||| Sbjct: 134724 aggcagctgagaaggctgtg 134743
>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome Length = 3147090 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 235 ggaggcagctgagaaggctg 254 |||||||||||||||||||| Sbjct: 2064917 ggaggcagctgagaaggctg 2064898
>emb|AJ564636.1|LMO564636 Lily mottle virus gene for polyprotein, genomic RNA, isolate Sb Length = 9644 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 241 agctgagaaggctgtggccacctt 264 ||||||||||||| |||||||||| Sbjct: 347 agctgagaaggctttggccacctt 324
>dbj|AP003171.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-676F20, complete sequence Length = 137000 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 283 gagaactgggatgagagtca 302 |||||||||||||||||||| Sbjct: 112918 gagaactgggatgagagtca 112937
>dbj|AP006213.1| Homo sapiens genomic DNA, chromosome 11, clone:CMB9-59N21, complete sequence Length = 148782 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 237 aggcagctgagaaggctgtg 256 |||||||||||||||||||| Sbjct: 74801 aggcagctgagaaggctgtg 74782 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,617,989 Number of Sequences: 3902068 Number of extensions: 5617989 Number of successful extensions: 106389 Number of sequences better than 10.0: 44 Number of HSP's better than 10.0 without gapping: 44 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 106204 Number of HSP's gapped (non-prelim): 184 length of query: 581 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 558 effective length of database: 17,143,297,704 effective search space: 9565960118832 effective search space used: 9565960118832 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
