>PSD6_ORYSA (Q8W425) 26S proteasome non-ATPase regulatory subunit 6 (26S|
           proteasome regulatory particle non-ATPase subunit 7)
           (OsRPN7)
          Length = 389

 Score =  294 bits (752), Expect = 1e-79
 Identities = 149/157 (94%), Positives = 153/157 (97%)
 Frame = +3

Query: 9   RVSLKQKVVDAPEILAVIGKVPHLSEFLNSLYDCQYKSFFVAFSGLTEQIKLDRYLQPHF 188
           RVSLK KVVDAPEILAVIGKVPHLSEFLNSLY+CQYKSFF AFSGLTEQIKLDRYLQPHF
Sbjct: 233 RVSLKAKVVDAPEILAVIGKVPHLSEFLNSLYNCQYKSFFAAFSGLTEQIKLDRYLQPHF 292

Query: 189 RYFMREVRTVVYSQFLESYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAG 368
           RY+MREVRTVVYSQFLESYKSVTMEAMA+AFGVTVDFID ELSRFIAAGKLHCKIDKVA 
Sbjct: 293 RYYMREVRTVVYSQFLESYKSVTMEAMASAFGVTVDFIDLELSRFIAAGKLHCKIDKVAC 352

Query: 369 VLETNRPDARNAFYQSTIKQGDFLLNRIQKLSRVIDL 479
           VLETNRPDARNAFYQ+TIKQGDFLLNRIQKLSRVIDL
Sbjct: 353 VLETNRPDARNAFYQATIKQGDFLLNRIQKLSRVIDL 389

>PSD6_ARATH (Q93Y35) Probable 26S proteasome non-ATPase regulatory subunit 6|
          Length = 387

 Score =  275 bits (703), Expect = 6e-74
 Identities = 136/157 (86%), Positives = 148/157 (94%)
 Frame = +3

Query: 9   RVSLKQKVVDAPEILAVIGKVPHLSEFLNSLYDCQYKSFFVAFSGLTEQIKLDRYLQPHF 188
           RVSLKQKVVDAPEIL V+GK+P LSEFLNSLY+CQYK+FF AF+G+  QIK DRYL PHF
Sbjct: 231 RVSLKQKVVDAPEILTVLGKIPFLSEFLNSLYECQYKAFFSAFAGMAVQIKYDRYLYPHF 290

Query: 189 RYFMREVRTVVYSQFLESYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAG 368
           R++MREVRTVVYSQFLESYKSVT+EAMA AFGV+VDFIDQELSRFIAAGKLHCKIDKVAG
Sbjct: 291 RFYMREVRTVVYSQFLESYKSVTVEAMAKAFGVSVDFIDQELSRFIAAGKLHCKIDKVAG 350

Query: 369 VLETNRPDARNAFYQSTIKQGDFLLNRIQKLSRVIDL 479
           VLETNRPDA+NA YQ+TIKQGDFLLNRIQKLSRVIDL
Sbjct: 351 VLETNRPDAKNALYQATIKQGDFLLNRIQKLSRVIDL 387

>PSD6_DROME (Q9V3G7) 26S proteasome non-ATPase regulatory subunit 6 (26S|
           proteasome regulatory subunit S10) (Rpn7 protein)
          Length = 389

 Score =  191 bits (485), Expect = 1e-48
 Identities = 88/157 (56%), Positives = 127/157 (80%)
 Frame = +3

Query: 9   RVSLKQKVVDAPEILAVIGKVPHLSEFLNSLYDCQYKSFFVAFSGLTEQIKLDRYLQPHF 188
           R  L+ KV+   EI  V+  +P + +FL SLY+CQY++F+V  +G+ +Q++LD  + PH+
Sbjct: 233 RNELRDKVIKGSEIQEVLHGLPDVKQFLFSLYNCQYENFYVHLAGVEKQLRLDYLIHPHY 292

Query: 189 RYFMREVRTVVYSQFLESYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAG 368
           RY++RE+R + Y+Q LESY+S+T++ MA +FGVTV++IDQEL+RFIAAG+LH K+D+V G
Sbjct: 293 RYYVREMRILGYTQLLESYRSLTLQYMAESFGVTVEYIDQELARFIAAGRLHAKVDRVGG 352

Query: 369 VLETNRPDARNAFYQSTIKQGDFLLNRIQKLSRVIDL 479
           ++ETNRPD +N  YQ+TIKQGD LLNRIQKLSRVI++
Sbjct: 353 IVETNRPDNKNWQYQATIKQGDLLLNRIQKLSRVINI 389

>PSD6_MOUSE (Q99JI4) 26S proteasome non-ATPase regulatory subunit 6 (26S|
           proteasome regulatory subunit S10) (p42A)
          Length = 389

 Score =  184 bits (468), Expect = 1e-46
 Identities = 89/157 (56%), Positives = 121/157 (77%)
 Frame = +3

Query: 9   RVSLKQKVVDAPEILAVIGKVPHLSEFLNSLYDCQYKSFFVAFSGLTEQIKLDRYLQPHF 188
           R  L++KV+   EIL V+  +P + ++L SLY+C+Y  FF + + + +++K D    PH+
Sbjct: 233 RPDLREKVIKGAEILEVLHSLPAVRQYLFSLYECRYSVFFQSLAIVEQEMKKDWLFAPHY 292

Query: 189 RYFMREVRTVVYSQFLESYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAG 368
           RY++RE+R   YSQ LESY+S+T+  MA AFGV VDFIDQELSRFIAAG+LHCKIDKV  
Sbjct: 293 RYYVREMRIHAYSQLLESYRSLTLGYMAEAFGVGVDFIDQELSRFIAAGRLHCKIDKVNE 352

Query: 369 VLETNRPDARNAFYQSTIKQGDFLLNRIQKLSRVIDL 479
           ++ETNRPD++N  YQ TIK+GD LLNR+QKLSRVI++
Sbjct: 353 IVETNRPDSKNWQYQETIKKGDLLLNRVQKLSRVINM 389

>PSD6_HUMAN (Q15008) 26S proteasome non-ATPase regulatory subunit 6 (26S|
           proteasome regulatory subunit S10) (p42A) (Proteasome
           regulatory particle subunit p44S10) (Phosphonoformate
           immuno-associated protein 4) (Breast cancer-associated
           protein SGA-113M)
          Length = 389

 Score =  183 bits (465), Expect = 3e-46
 Identities = 88/157 (56%), Positives = 121/157 (77%)
 Frame = +3

Query: 9   RVSLKQKVVDAPEILAVIGKVPHLSEFLNSLYDCQYKSFFVAFSGLTEQIKLDRYLQPHF 188
           R  L++KV+   EIL V+  +P + ++L SLY+C+Y  FF + + + +++K D    PH+
Sbjct: 233 RPDLREKVIKGAEILEVLHSLPAVRQYLFSLYECRYSVFFQSLAVVEQEMKKDWLFAPHY 292

Query: 189 RYFMREVRTVVYSQFLESYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAG 368
           RY++RE+R   YSQ LESY+S+T+  MA AFGV V+FIDQELSRFIAAG+LHCKIDKV  
Sbjct: 293 RYYVREMRIHAYSQLLESYRSLTLGYMAEAFGVGVEFIDQELSRFIAAGRLHCKIDKVNE 352

Query: 369 VLETNRPDARNAFYQSTIKQGDFLLNRIQKLSRVIDL 479
           ++ETNRPD++N  YQ TIK+GD LLNR+QKLSRVI++
Sbjct: 353 IVETNRPDSKNWQYQETIKKGDLLLNRVQKLSRVINM 389

>RPN7_SCHPO (Q10335) Probable 26S proteasome regulatory subunit rpn7|
          Length = 409

 Score =  152 bits (385), Expect = 5e-37
 Identities = 76/166 (45%), Positives = 115/166 (69%), Gaps = 4/166 (2%)
 Frame = +3

Query: 9   RVSLKQKVVDAPEILAVIGKVPHLSEF---LNSLYDCQYKSFFVAFSGL-TEQIKLDRYL 176
           RV +K K+VD+PE+LAV+ +   +S     +NSLY C Y  FF   + +    +K D++L
Sbjct: 244 RVDVKTKIVDSPEVLAVLPQNESMSSLEACINSLYLCDYSGFFRTLADVEVNHLKCDQFL 303

Query: 177 QPHFRYFMREVRTVVYSQFLESYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKID 356
             H+RY++RE+R   Y+Q LESY+++++++MAA+FGV+VD+ID++L+ FI   KL+C ID
Sbjct: 304 VAHYRYYVREMRRRAYAQLLESYRALSIDSMAASFGVSVDYIDRDLASFIPDNKLNCVID 363

Query: 357 KVAGVLETNRPDARNAFYQSTIKQGDFLLNRIQKLSRVIDL*AFFV 494
           +V GV+ TNRPD +N  YQ  +KQGD LLN++QK    +   AF V
Sbjct: 364 RVNGVVFTNRPDEKNRQYQEVVKQGDVLLNKLQKYQATVMRGAFKV 409

>PSD6_CAEEL (Q20585) 26S proteasome non-ATPase regulatory subunit 6 (26S|
           proteasome regulatory subunit rpn-7)
          Length = 410

 Score =  145 bits (365), Expect = 1e-34
 Identities = 76/163 (46%), Positives = 103/163 (63%), Gaps = 7/163 (4%)
 Frame = +3

Query: 9   RVSLKQKVVDAPEILAVI------GKVPHLSEFLNSLYDCQYKSFFVAFSGL-TEQIKLD 167
           R  L+ KV+   E+   +      G +  + E+L S YDC Y  FF+  + L +E+ K D
Sbjct: 247 RPDLRTKVIRCNEVQEQLTGGGLNGTLIPVREYLESYYDCHYDRFFIQLAALESERFKFD 306

Query: 168 RYLQPHFRYFMREVRTVVYSQFLESYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHC 347
           RYL PHF Y+ R +R   Y QFL  YK+V ++ MA  FGV+  FID+EL R IA G+L C
Sbjct: 307 RYLSPHFNYYSRGMRHRAYEQFLTPYKTVRIDMMAKDFGVSRAFIDRELHRLIATGQLQC 366

Query: 348 KIDKVAGVLETNRPDARNAFYQSTIKQGDFLLNRIQKLSRVID 476
           +ID V GV+E N  D++N  Y++ IK GD LLNRIQKL+RVI+
Sbjct: 367 RIDAVNGVIEVNHRDSKNHLYKAVIKDGDILLNRIQKLARVIN 409

>RPN7_YEAST (Q06103) 26S proteasome regulatory subunit RPN7|
          Length = 429

 Score =  130 bits (328), Expect = 2e-30
 Identities = 69/161 (42%), Positives = 103/161 (63%), Gaps = 4/161 (2%)
 Frame = +3

Query: 9   RVSLKQKVVDAPEILAVIGKVPHL---SEFLNSLYDCQYKSFFVAFSGLTEQIKLD-RYL 176
           R  LK KV+D+PE+L++I     L   S    SLY   Y S+F         + +  +YL
Sbjct: 263 RTDLKSKVIDSPELLSLISTTAALQSISSLTISLYASDYASYFPYLLETYANVLIPCKYL 322

Query: 177 QPHFRYFMREVRTVVYSQFLESYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKID 356
             H  +F+RE+R  VY+Q LESYK++++++MA+AFGV+V F+D +L +FI   +L+C ID
Sbjct: 323 NRHADFFVREMRRKVYAQLLESYKTLSLKSMASAFGVSVAFLDNDLGKFIPNKQLNCVID 382

Query: 357 KVAGVLETNRPDARNAFYQSTIKQGDFLLNRIQKLSRVIDL 479
           +V G++ETNRPD +NA Y   +KQGD LL ++QK    + L
Sbjct: 383 RVNGIVETNRPDNKNAQYHLLVKQGDGLLTKLQKYGAAVRL 423

>CSN1_MOUSE (Q99LD4) COP9 signalosome complex subunit 1 (Signalosome subunit 1)|
           (SGN1) (JAB1-containing signalosome subunit 1) (G
           protein pathway suppressor 1) (GPS1 protein)
          Length = 471

 Score = 70.1 bits (170), Expect = 4e-12
 Identities = 36/141 (25%), Positives = 66/141 (46%)
 Frame = +3

Query: 9   RVSLKQKVVDAPEILAVIGKVPHLSEFLNSLYDCQYKSFFVAFSGLTEQIKLDRYLQPHF 188
           R  L++ V+ +      +   P + + +   Y+ +Y S       + + + LD YL PH 
Sbjct: 283 RQELQRNVISSSSFKLFLELEPQVRDIIFKFYESKYASCLKMLDEMKDNLLLDMYLAPHV 342

Query: 189 RYFMREVRTVVYSQFLESYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAG 368
           R    ++R     Q+   Y S  M  MAAAF  TV  ++ EL++ I  G ++ +ID  + 
Sbjct: 343 RTLYTQIRNRALIQYFSPYVSADMHKMAAAFNTTVAALEDELTQLILEGLINARIDSHSK 402

Query: 369 VLETNRPDARNAFYQSTIKQG 431
           +L     D R+  ++ ++  G
Sbjct: 403 ILYARDVDQRSTTFEKSLLMG 423

>CSN1_ARATH (P45432) COP9 signalosome complex subunit 1 (CSN complex subunit 1)|
           (Constitutive photomorphogenesis protein 11) (FUSCA
           protein 6) (FUSCA6)
          Length = 441

 Score = 69.7 bits (169), Expect = 5e-12
 Identities = 40/142 (28%), Positives = 65/142 (45%)
 Frame = +3

Query: 9   RVSLKQKVVDAPEILAVIGKVPHLSEFLNSLYDCQYKSFFVAFSGLTEQIKLDRYLQPHF 188
           R  LKQKV+D       +  VP + E +N  Y  +Y S     + L   + LD +L  H 
Sbjct: 272 RSELKQKVIDNINFRNFLELVPDVRELINDFYSSRYASCLEYLASLKSNLLLDIHLHDHV 331

Query: 189 RYFMREVRTVVYSQFLESYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAG 368
                ++R     Q+   + SV +  MA AF  +V  +++EL   I   ++  +ID    
Sbjct: 332 DTLYDQIRKKALIQYTLPFVSVDLSRMADAFKTSVSGLEKELEALITDNQIQARIDSHNK 391

Query: 369 VLETNRPDARNAFYQSTIKQGD 434
           +L     D RNA +Q  ++ G+
Sbjct: 392 ILYARHADQRNATFQKVLQMGN 413

>CSN1_XENLA (Q6NRT5) COP9 signalosome complex subunit 1 (Signalosome subunit 1)|
          Length = 487

 Score = 69.7 bits (169), Expect = 5e-12
 Identities = 35/141 (24%), Positives = 66/141 (46%)
 Frame = +3

Query: 9   RVSLKQKVVDAPEILAVIGKVPHLSEFLNSLYDCQYKSFFVAFSGLTEQIKLDRYLQPHF 188
           R  L++ V+ +      +   P + + +   Y+ +Y S       + + + LD YL PH 
Sbjct: 299 RQELQRNVISSSSFKLFLELEPQVRDIIFKFYESKYASCLKMLDEIKDNLLLDMYLAPHV 358

Query: 189 RYFMREVRTVVYSQFLESYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAG 368
           R    ++R     Q+   Y S  M  MA AF  TV  ++ EL++ I  G ++ +ID  + 
Sbjct: 359 RTLYTQIRNRALIQYFSPYVSADMYKMATAFNTTVSALEDELTQLILEGLINARIDSHSK 418

Query: 369 VLETNRPDARNAFYQSTIKQG 431
           +L     D R+  ++ +++ G
Sbjct: 419 ILYARDVDQRSTTFEKSLQMG 439

>CSN1_RAT (P97834) COP9 signalosome complex subunit 1 (Signalosome subunit 1)|
           (SGN1) (JAB1-containing signalosome subunit 1) (G
           protein pathway suppressor 1) (MFH protein)
          Length = 471

 Score = 69.7 bits (169), Expect = 5e-12
 Identities = 36/141 (25%), Positives = 66/141 (46%)
 Frame = +3

Query: 9   RVSLKQKVVDAPEILAVIGKVPHLSEFLNSLYDCQYKSFFVAFSGLTEQIKLDRYLQPHF 188
           R  L++ V+ +      +   P + + +   Y+ +Y S       + + + LD YL PH 
Sbjct: 283 RQELQRNVISSSSFKLFLELEPQVRDIIFKFYESKYASCLKMLDEMKDNLLLDMYLAPHV 342

Query: 189 RYFMREVRTVVYSQFLESYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAG 368
           R    ++R     Q+   Y S  M  MAAAF  TV  ++ EL++ I  G ++ +ID  + 
Sbjct: 343 RTLYTQIRNRALIQYFSPYVSADMHKMAAAFNTTVAALEDELTQVILEGLINARIDSHSK 402

Query: 369 VLETNRPDARNAFYQSTIKQG 431
           +L     D R+  ++ ++  G
Sbjct: 403 ILYARDVDQRSTTFEKSLLMG 423

>CSN1_HUMAN (Q13098) COP9 signalosome complex subunit 1 (Signalosome subunit 1)|
           (SGN1) (JAB1-containing signalosome subunit 1) (G
           protein pathway suppressor 1) (GPS1 protein) (MFH
           protein)
          Length = 471

 Score = 68.9 bits (167), Expect = 9e-12
 Identities = 35/141 (24%), Positives = 65/141 (46%)
 Frame = +3

Query: 9   RVSLKQKVVDAPEILAVIGKVPHLSEFLNSLYDCQYKSFFVAFSGLTEQIKLDRYLQPHF 188
           R  L++ V+ +      +   P + + +   Y+ +Y S       + + + LD YL PH 
Sbjct: 283 RQELQRNVISSSSFKLFLELEPQVRDIIFKFYESKYASCLKMLDEMKDNLLLDMYLAPHV 342

Query: 189 RYFMREVRTVVYSQFLESYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAG 368
           R    ++R     Q+   Y S  M  MAAAF  TV  ++ EL++ I  G +  ++D  + 
Sbjct: 343 RTLYTQIRNRALIQYFSPYVSADMHRMAAAFNTTVAALEDELTQLILEGLISARVDSHSK 402

Query: 369 VLETNRPDARNAFYQSTIKQG 431
           +L     D R+  ++ ++  G
Sbjct: 403 ILYARDVDQRSTTFEKSLLMG 423

>CSN1_DROME (Q9VVU5) COP9 signalosome complex subunit 1b (Signalosome subunit|
           1b) (Dch1-2)
          Length = 525

 Score = 62.8 bits (151), Expect = 6e-10
 Identities = 33/141 (23%), Positives = 62/141 (43%)
 Frame = +3

Query: 9   RVSLKQKVVDAPEILAVIGKVPHLSEFLNSLYDCQYKSFFVAFSGLTEQIKLDRYLQPHF 188
           R  LK+ V+ +      +   P L + +   Y+ +Y S       + + + +D Y+ PH 
Sbjct: 332 RQELKRLVIASTSFKLFLELEPQLRDIIFKFYESKYASCLTLLDEIRDNLLVDMYIAPHV 391

Query: 189 RYFMREVRTVVYSQFLESYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAG 368
                ++R     Q+   Y S  M  MA AF  +V  ++ E+ + I  G++  +ID    
Sbjct: 392 TTLYTKIRNRALIQYFSPYMSADMHKMAMAFNSSVGDLENEVMQLILDGQIQARIDSHNK 451

Query: 369 VLETNRPDARNAFYQSTIKQG 431
           +L     D RN+ ++  +  G
Sbjct: 452 ILFAKEADQRNSTFERALIMG 472

>CSN2_DROME (Q94899) COP9 signalosome complex subunit 2 (Signalosome subunit 2)|
           (Dch2) (Alien protein)
          Length = 444

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 32/140 (22%), Positives = 62/140 (44%)
 Frame = +3

Query: 42  PEILAVIGKVPHLSEFLNSLYDCQYKSFFVAFSGLTEQIKLDRYLQPHFRYFMREVRTVV 221
           PEILA       ++  +NS  +     F          I  D++++ H    +R +RT V
Sbjct: 307 PEILA-------MTNLVNSYQNNDINEFETILRQHRSNIMADQFIREHIEDLLRNIRTQV 359

Query: 222 YSQFLESYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARN 401
             + +  YK++ +  +A A  +    ++  L   I    +  +ID+V  VL+ ++ ++  
Sbjct: 360 LIKLIRPYKNIAIPFIANALNIEPAEVESLLVSCILDDTIKGRIDQVNQVLQLDKINSSA 419

Query: 402 AFYQSTIKQGDFLLNRIQKL 461
           + Y +  K      N+IQ L
Sbjct: 420 SRYNALEKWS----NQIQSL 435

>CSN1_SCHPO (O94308) COP9 signalosome complex subunit 1 (CSN complex subunit 1)|
           (SGN1)
          Length = 422

 Score = 39.3 bits (90), Expect = 0.008
 Identities = 28/120 (23%), Positives = 47/120 (39%)
 Frame = +3

Query: 3   WXRVSLKQKVVDAPEILAVIGKVPHLSEFLNSLYDCQYKSFFVAFSGLTEQIKLDRYLQP 182
           W    L Q++    E  A+    P L   L +  + +Y           +   LD YL P
Sbjct: 239 WDHKRLIQELERNEEFNALSDLDPSLRRCLQAKCNRKYSLLLDTLQQNAQDYSLDMYLAP 298

Query: 183 HFRYFMREVRTVVYSQFLESYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKV 362
                   +R      +L  Y ++    +A  F +  +FI++ L   I A KL+ K+D +
Sbjct: 299 QLTNLFSLIRERSLLDYLIPYSALPFSKIAVDFHIDENFIEKNLLEIIEAKKLNGKVDSL 358

>PSD12_MOUSE (Q9D8W5) 26S proteasome non-ATPase regulatory subunit 12 (26S|
           proteasome regulatory subunit p55)
          Length = 455

 Score = 38.5 bits (88), Expect = 0.013
 Identities = 20/77 (25%), Positives = 39/77 (50%)
 Frame = +3

Query: 243 YKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQSTI 422
           Y  +TM+ MA    ++VD  +  LS  +    +  K+D++AGV+   RP   N       
Sbjct: 369 YTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGVINFQRPKDPNNLLNDWS 428

Query: 423 KQGDFLLNRIQKLSRVI 473
           ++ + L++ + K + +I
Sbjct: 429 QKLNSLMSLVNKTTHLI 445

>PSD12_PONPY (Q5RBI3) 26S proteasome non-ATPase regulatory subunit 12 (26S|
           proteasome regulatory subunit p55)
          Length = 455

 Score = 38.1 bits (87), Expect = 0.017
 Identities = 19/77 (24%), Positives = 39/77 (50%)
 Frame = +3

Query: 243 YKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQSTI 422
           Y  +TM+ MA    ++VD  +  LS  +    +  K+D++AG++   RP   N       
Sbjct: 369 YTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGIINFQRPKDPNNLLNDWS 428

Query: 423 KQGDFLLNRIQKLSRVI 473
           ++ + L++ + K + +I
Sbjct: 429 QKLNSLMSLVNKTTHLI 445

>PSD12_HUMAN (O00232) 26S proteasome non-ATPase regulatory subunit 12 (26S|
           proteasome regulatory subunit p55)
          Length = 455

 Score = 38.1 bits (87), Expect = 0.017
 Identities = 19/77 (24%), Positives = 39/77 (50%)
 Frame = +3

Query: 243 YKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQSTI 422
           Y  +TM+ MA    ++VD  +  LS  +    +  K+D++AG++   RP   N       
Sbjct: 369 YTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGIINFQRPKDPNNLLNDWS 428

Query: 423 KQGDFLLNRIQKLSRVI 473
           ++ + L++ + K + +I
Sbjct: 429 QKLNSLMSLVNKTTHLI 445

>CRT_CLOAB (P52046) 3-hydroxybutyryl-CoA dehydratase (EC 4.2.1.55) (Crotonase)|
          Length = 261

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = +3

Query: 348 KIDKVAGVLETNRPDARNAFYQSTIKQGDFLLNRIQKLSRVI 473
           K  KVA V+  NRP A NA    T+K+ D+++  I+  S V+
Sbjct: 10  KEGKVA-VVTINRPKALNALNSDTLKEMDYVIGEIENDSEVL 50

>TRME_PHOLL (Q7MAX1) tRNA modification GTPase trmE|
          Length = 454

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 17/47 (36%), Positives = 28/47 (59%)
 Frame = +3

Query: 291 VDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQSTIKQG 431
           +DF D+E+  F++ GK+  K+D+V   LE  R  AR     S +++G
Sbjct: 174 IDFPDEEID-FLSDGKIEAKLDEVIVELERVRSQARQG---SLLREG 216

>DUS2_BACSU (O31546) Probable tRNA-dihydrouridine synthase 2 (EC 1.-.-.-)|
          Length = 325

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 11/28 (39%), Positives = 21/28 (75%)
 Frame = +1

Query: 217 LSIRSSLSHTRV*QWRQWLPHLV*QLIS 300
           +S+++ L +T V +WR+WL H++ Q I+
Sbjct: 140 VSVKTRLGYTDVDEWREWLTHILKQDIA 167

>SYC_STRMU (Q8DWA9) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA|
           ligase) (CysRS)
          Length = 447

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
 Frame = +3

Query: 171 YLQPHFRYFMREVRTVVYSQFLESYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCK 350
           Y QP    F   V   V+++FLE +++   E    A G+TV F   EL+++I +G     
Sbjct: 325 YEQP----FTATVDEAVFARFLEKFQAAMDEDFNTANGITVVF---ELAKWINSGHYDQT 377

Query: 351 I-DKVAGVLE 377
           + DK A +L+
Sbjct: 378 VKDKFAEILQ 387

>GGAA_BACSU (P46917) Minor teichoic acid biosynthesis protein ggaA|
          Length = 446

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 16/57 (28%), Positives = 30/57 (52%)
 Frame = -2

Query: 239 LKELRIDNSAHFTHEVAEMWLQVSV*LDLLRQARECHKK*LVLTIVEGIEKFREVRY 69
           +K LR++ + HF ++  EM     + +   ++ ++C +K L  TI     K R+ RY
Sbjct: 346 IKGLRLELTGHFINQYYEMKENDRIYIKYFKRLKKCKRKELKKTIEVWGYKLRDFRY 402

>HXK4_RAT (P17712) Glucokinase (EC 2.7.1.2) (Hexokinase-4) (Hexokinase type|
           IV) (HK IV) (HK4) (Hexokinase-D)
          Length = 465

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 21/79 (26%), Positives = 35/79 (44%)
 Frame = -3

Query: 460 SFCMRFSRKSPCLMVDW*KAFRASGRFVSRTPATLSILQ*SFPAAIKRDNSWSMKSTVTP 281
           SF +R       ++++W K F+ASG   +     L         AIKR   + M      
Sbjct: 151 SFPVRHEDLDKGILLNWTKGFKASGAEGNNIVGLLR-------DAIKRRGDFEMDVVAMV 203

Query: 280 NAAAIASIVTLLYDSRNCE 224
           N   +A++++  Y+ R CE
Sbjct: 204 N-DTVATMISCYYEDRQCE 221


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,968,671
Number of Sequences: 219361
Number of extensions: 1633105
Number of successful extensions: 3889
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 3806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3885
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4585734400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)