ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags37l15 |
|---|---|
| Clone Library Name | barley_pub |
>PSD6_ORYSA (Q8W425) 26S proteasome non-ATPase regulatory subunit 6 (26S| proteasome regulatory particle non-ATPase subunit 7) (OsRPN7) Length = 389 Score = 306 bits (784), Expect = 4e-83 Identities = 156/165 (94%), Positives = 161/165 (97%) Frame = +2 Query: 2 LTSVITLDRVSLKQKVVDAPEILAVIGKVPHLSEFLNSLYDCQYKSFFVAFSGLTEQIKL 181 LTSVI+LDRVSLK KVVDAPEILAVIGKVPHLSEFLNSLY+CQYKSFF AFSGLTEQIKL Sbjct: 225 LTSVISLDRVSLKAKVVDAPEILAVIGKVPHLSEFLNSLYNCQYKSFFAAFSGLTEQIKL 284 Query: 182 DRYLQPHFRYFMREVRTVVYSQFLESYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLH 361 DRYLQPHFRY+MREVRTVVYSQFLESYKSVTMEAMA+AFGVTVDFID ELSRFIAAGKLH Sbjct: 285 DRYLQPHFRYYMREVRTVVYSQFLESYKSVTMEAMASAFGVTVDFIDLELSRFIAAGKLH 344 Query: 362 CKIDKVAGVLETNRPDARNAFYQSTIKQGDFLLNRIQKLSRVIDL 496 CKIDKVA VLETNRPDARNAFYQ+TIKQGDFLLNRIQKLSRVIDL Sbjct: 345 CKIDKVACVLETNRPDARNAFYQATIKQGDFLLNRIQKLSRVIDL 389
>PSD6_ARATH (Q93Y35) Probable 26S proteasome non-ATPase regulatory subunit 6| Length = 387 Score = 288 bits (738), Expect = 8e-78 Identities = 143/165 (86%), Positives = 156/165 (94%) Frame = +2 Query: 2 LTSVITLDRVSLKQKVVDAPEILAVIGKVPHLSEFLNSLYDCQYKSFFVAFSGLTEQIKL 181 LTS+ITLDRVSLKQKVVDAPEIL V+GK+P LSEFLNSLY+CQYK+FF AF+G+ QIK Sbjct: 223 LTSIITLDRVSLKQKVVDAPEILTVLGKIPFLSEFLNSLYECQYKAFFSAFAGMAVQIKY 282 Query: 182 DRYLQPHFRYFMREVRTVVYSQFLESYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLH 361 DRYL PHFR++MREVRTVVYSQFLESYKSVT+EAMA AFGV+VDFIDQELSRFIAAGKLH Sbjct: 283 DRYLYPHFRFYMREVRTVVYSQFLESYKSVTVEAMAKAFGVSVDFIDQELSRFIAAGKLH 342 Query: 362 CKIDKVAGVLETNRPDARNAFYQSTIKQGDFLLNRIQKLSRVIDL 496 CKIDKVAGVLETNRPDA+NA YQ+TIKQGDFLLNRIQKLSRVIDL Sbjct: 343 CKIDKVAGVLETNRPDAKNALYQATIKQGDFLLNRIQKLSRVIDL 387
>PSD6_DROME (Q9V3G7) 26S proteasome non-ATPase regulatory subunit 6 (26S| proteasome regulatory subunit S10) (Rpn7 protein) Length = 389 Score = 194 bits (494), Expect = 2e-49 Identities = 90/163 (55%), Positives = 131/163 (80%) Frame = +2 Query: 8 SVITLDRVSLKQKVVDAPEILAVIGKVPHLSEFLNSLYDCQYKSFFVAFSGLTEQIKLDR 187 ++I L R L+ KV+ EI V+ +P + +FL SLY+CQY++F+V +G+ +Q++LD Sbjct: 227 AMIALPRNELRDKVIKGSEIQEVLHGLPDVKQFLFSLYNCQYENFYVHLAGVEKQLRLDY 286 Query: 188 YLQPHFRYFMREVRTVVYSQFLESYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCK 367 + PH+RY++RE+R + Y+Q LESY+S+T++ MA +FGVTV++IDQEL+RFIAAG+LH K Sbjct: 287 LIHPHYRYYVREMRILGYTQLLESYRSLTLQYMAESFGVTVEYIDQELARFIAAGRLHAK 346 Query: 368 IDKVAGVLETNRPDARNAFYQSTIKQGDFLLNRIQKLSRVIDL 496 +D+V G++ETNRPD +N YQ+TIKQGD LLNRIQKLSRVI++ Sbjct: 347 VDRVGGIVETNRPDNKNWQYQATIKQGDLLLNRIQKLSRVINI 389
>PSD6_MOUSE (Q99JI4) 26S proteasome non-ATPase regulatory subunit 6 (26S| proteasome regulatory subunit S10) (p42A) Length = 389 Score = 190 bits (483), Expect = 3e-48 Identities = 92/163 (56%), Positives = 126/163 (77%) Frame = +2 Query: 8 SVITLDRVSLKQKVVDAPEILAVIGKVPHLSEFLNSLYDCQYKSFFVAFSGLTEQIKLDR 187 S+I L+R L++KV+ EIL V+ +P + ++L SLY+C+Y FF + + + +++K D Sbjct: 227 SMIALERPDLREKVIKGAEILEVLHSLPAVRQYLFSLYECRYSVFFQSLAIVEQEMKKDW 286 Query: 188 YLQPHFRYFMREVRTVVYSQFLESYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCK 367 PH+RY++RE+R YSQ LESY+S+T+ MA AFGV VDFIDQELSRFIAAG+LHCK Sbjct: 287 LFAPHYRYYVREMRIHAYSQLLESYRSLTLGYMAEAFGVGVDFIDQELSRFIAAGRLHCK 346 Query: 368 IDKVAGVLETNRPDARNAFYQSTIKQGDFLLNRIQKLSRVIDL 496 IDKV ++ETNRPD++N YQ TIK+GD LLNR+QKLSRVI++ Sbjct: 347 IDKVNEIVETNRPDSKNWQYQETIKKGDLLLNRVQKLSRVINM 389
>PSD6_HUMAN (Q15008) 26S proteasome non-ATPase regulatory subunit 6 (26S| proteasome regulatory subunit S10) (p42A) (Proteasome regulatory particle subunit p44S10) (Phosphonoformate immuno-associated protein 4) (Breast cancer-associated protein SGA-113M) Length = 389 Score = 189 bits (480), Expect = 6e-48 Identities = 91/163 (55%), Positives = 126/163 (77%) Frame = +2 Query: 8 SVITLDRVSLKQKVVDAPEILAVIGKVPHLSEFLNSLYDCQYKSFFVAFSGLTEQIKLDR 187 S+I L+R L++KV+ EIL V+ +P + ++L SLY+C+Y FF + + + +++K D Sbjct: 227 SMIALERPDLREKVIKGAEILEVLHSLPAVRQYLFSLYECRYSVFFQSLAVVEQEMKKDW 286 Query: 188 YLQPHFRYFMREVRTVVYSQFLESYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCK 367 PH+RY++RE+R YSQ LESY+S+T+ MA AFGV V+FIDQELSRFIAAG+LHCK Sbjct: 287 LFAPHYRYYVREMRIHAYSQLLESYRSLTLGYMAEAFGVGVEFIDQELSRFIAAGRLHCK 346 Query: 368 IDKVAGVLETNRPDARNAFYQSTIKQGDFLLNRIQKLSRVIDL 496 IDKV ++ETNRPD++N YQ TIK+GD LLNR+QKLSRVI++ Sbjct: 347 IDKVNEIVETNRPDSKNWQYQETIKKGDLLLNRVQKLSRVINM 389
>RPN7_SCHPO (Q10335) Probable 26S proteasome regulatory subunit rpn7| Length = 409 Score = 159 bits (403), Expect = 5e-39 Identities = 79/174 (45%), Positives = 121/174 (69%), Gaps = 4/174 (2%) Frame = +2 Query: 2 LTSVITLDRVSLKQKVVDAPEILAVIGKVPHLSEF---LNSLYDCQYKSFFVAFSGL-TE 169 ++ I+LDRV +K K+VD+PE+LAV+ + +S +NSLY C Y FF + + Sbjct: 236 ISGAISLDRVDVKTKIVDSPEVLAVLPQNESMSSLEACINSLYLCDYSGFFRTLADVEVN 295 Query: 170 QIKLDRYLQPHFRYFMREVRTVVYSQFLESYKSVTMEAMAAAFGVTVDFIDQELSRFIAA 349 +K D++L H+RY++RE+R Y+Q LESY+++++++MAA+FGV+VD+ID++L+ FI Sbjct: 296 HLKCDQFLVAHYRYYVREMRRRAYAQLLESYRALSIDSMAASFGVSVDYIDRDLASFIPD 355 Query: 350 GKLHCKIDKVAGVLETNRPDARNAFYQSTIKQGDFLLNRIQKLSRVIDL*AFFV 511 KL+C ID+V GV+ TNRPD +N YQ +KQGD LLN++QK + AF V Sbjct: 356 NKLNCVIDRVNGVVFTNRPDEKNRQYQEVVKQGDVLLNKLQKYQATVMRGAFKV 409
>PSD6_CAEEL (Q20585) 26S proteasome non-ATPase regulatory subunit 6 (26S| proteasome regulatory subunit rpn-7) Length = 410 Score = 152 bits (383), Expect = 1e-36 Identities = 79/171 (46%), Positives = 108/171 (63%), Gaps = 7/171 (4%) Frame = +2 Query: 2 LTSVITLDRVSLKQKVVDAPEILAVI------GKVPHLSEFLNSLYDCQYKSFFVAFSGL 163 +T+ LDR L+ KV+ E+ + G + + E+L S YDC Y FF+ + L Sbjct: 239 ITTTFALDRPDLRTKVIRCNEVQEQLTGGGLNGTLIPVREYLESYYDCHYDRFFIQLAAL 298 Query: 164 -TEQIKLDRYLQPHFRYFMREVRTVVYSQFLESYKSVTMEAMAAAFGVTVDFIDQELSRF 340 +E+ K DRYL PHF Y+ R +R Y QFL YK+V ++ MA FGV+ FID+EL R Sbjct: 299 ESERFKFDRYLSPHFNYYSRGMRHRAYEQFLTPYKTVRIDMMAKDFGVSRAFIDRELHRL 358 Query: 341 IAAGKLHCKIDKVAGVLETNRPDARNAFYQSTIKQGDFLLNRIQKLSRVID 493 IA G+L C+ID V GV+E N D++N Y++ IK GD LLNRIQKL+RVI+ Sbjct: 359 IATGQLQCRIDAVNGVIEVNHRDSKNHLYKAVIKDGDILLNRIQKLARVIN 409
>RPN7_YEAST (Q06103) 26S proteasome regulatory subunit RPN7| Length = 429 Score = 137 bits (346), Expect = 2e-32 Identities = 72/169 (42%), Positives = 109/169 (64%), Gaps = 4/169 (2%) Frame = +2 Query: 2 LTSVITLDRVSLKQKVVDAPEILAVIGKVPHL---SEFLNSLYDCQYKSFFVAFSGLTEQ 172 +T + TL+R LK KV+D+PE+L++I L S SLY Y S+F Sbjct: 255 VTGLFTLERTDLKSKVIDSPELLSLISTTAALQSISSLTISLYASDYASYFPYLLETYAN 314 Query: 173 IKLD-RYLQPHFRYFMREVRTVVYSQFLESYKSVTMEAMAAAFGVTVDFIDQELSRFIAA 349 + + +YL H +F+RE+R VY+Q LESYK++++++MA+AFGV+V F+D +L +FI Sbjct: 315 VLIPCKYLNRHADFFVREMRRKVYAQLLESYKTLSLKSMASAFGVSVAFLDNDLGKFIPN 374 Query: 350 GKLHCKIDKVAGVLETNRPDARNAFYQSTIKQGDFLLNRIQKLSRVIDL 496 +L+C ID+V G++ETNRPD +NA Y +KQGD LL ++QK + L Sbjct: 375 KQLNCVIDRVNGIVETNRPDNKNAQYHLLVKQGDGLLTKLQKYGAAVRL 423
>CSN1_MOUSE (Q99LD4) COP9 signalosome complex subunit 1 (Signalosome subunit 1)| (SGN1) (JAB1-containing signalosome subunit 1) (G protein pathway suppressor 1) (GPS1 protein) Length = 471 Score = 75.9 bits (185), Expect = 1e-13 Identities = 39/149 (26%), Positives = 71/149 (47%) Frame = +2 Query: 2 LTSVITLDRVSLKQKVVDAPEILAVIGKVPHLSEFLNSLYDCQYKSFFVAFSGLTEQIKL 181 L ++ T DR L++ V+ + + P + + + Y+ +Y S + + + L Sbjct: 275 LCALATFDRQELQRNVISSSSFKLFLELEPQVRDIIFKFYESKYASCLKMLDEMKDNLLL 334 Query: 182 DRYLQPHFRYFMREVRTVVYSQFLESYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLH 361 D YL PH R ++R Q+ Y S M MAAAF TV ++ EL++ I G ++ Sbjct: 335 DMYLAPHVRTLYTQIRNRALIQYFSPYVSADMHKMAAAFNTTVAALEDELTQLILEGLIN 394 Query: 362 CKIDKVAGVLETNRPDARNAFYQSTIKQG 448 +ID + +L D R+ ++ ++ G Sbjct: 395 ARIDSHSKILYARDVDQRSTTFEKSLLMG 423
>CSN1_XENLA (Q6NRT5) COP9 signalosome complex subunit 1 (Signalosome subunit 1)| Length = 487 Score = 75.5 bits (184), Expect = 1e-13 Identities = 38/149 (25%), Positives = 71/149 (47%) Frame = +2 Query: 2 LTSVITLDRVSLKQKVVDAPEILAVIGKVPHLSEFLNSLYDCQYKSFFVAFSGLTEQIKL 181 L ++ T DR L++ V+ + + P + + + Y+ +Y S + + + L Sbjct: 291 LCALATFDRQELQRNVISSSSFKLFLELEPQVRDIIFKFYESKYASCLKMLDEIKDNLLL 350 Query: 182 DRYLQPHFRYFMREVRTVVYSQFLESYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLH 361 D YL PH R ++R Q+ Y S M MA AF TV ++ EL++ I G ++ Sbjct: 351 DMYLAPHVRTLYTQIRNRALIQYFSPYVSADMYKMATAFNTTVSALEDELTQLILEGLIN 410 Query: 362 CKIDKVAGVLETNRPDARNAFYQSTIKQG 448 +ID + +L D R+ ++ +++ G Sbjct: 411 ARIDSHSKILYARDVDQRSTTFEKSLQMG 439
>CSN1_RAT (P97834) COP9 signalosome complex subunit 1 (Signalosome subunit 1)| (SGN1) (JAB1-containing signalosome subunit 1) (G protein pathway suppressor 1) (MFH protein) Length = 471 Score = 75.5 bits (184), Expect = 1e-13 Identities = 39/149 (26%), Positives = 71/149 (47%) Frame = +2 Query: 2 LTSVITLDRVSLKQKVVDAPEILAVIGKVPHLSEFLNSLYDCQYKSFFVAFSGLTEQIKL 181 L ++ T DR L++ V+ + + P + + + Y+ +Y S + + + L Sbjct: 275 LCALATFDRQELQRNVISSSSFKLFLELEPQVRDIIFKFYESKYASCLKMLDEMKDNLLL 334 Query: 182 DRYLQPHFRYFMREVRTVVYSQFLESYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLH 361 D YL PH R ++R Q+ Y S M MAAAF TV ++ EL++ I G ++ Sbjct: 335 DMYLAPHVRTLYTQIRNRALIQYFSPYVSADMHKMAAAFNTTVAALEDELTQVILEGLIN 394 Query: 362 CKIDKVAGVLETNRPDARNAFYQSTIKQG 448 +ID + +L D R+ ++ ++ G Sbjct: 395 ARIDSHSKILYARDVDQRSTTFEKSLLMG 423
>CSN1_HUMAN (Q13098) COP9 signalosome complex subunit 1 (Signalosome subunit 1)| (SGN1) (JAB1-containing signalosome subunit 1) (G protein pathway suppressor 1) (GPS1 protein) (MFH protein) Length = 471 Score = 74.7 bits (182), Expect = 2e-13 Identities = 38/149 (25%), Positives = 70/149 (46%) Frame = +2 Query: 2 LTSVITLDRVSLKQKVVDAPEILAVIGKVPHLSEFLNSLYDCQYKSFFVAFSGLTEQIKL 181 L ++ T DR L++ V+ + + P + + + Y+ +Y S + + + L Sbjct: 275 LCALATFDRQELQRNVISSSSFKLFLELEPQVRDIIFKFYESKYASCLKMLDEMKDNLLL 334 Query: 182 DRYLQPHFRYFMREVRTVVYSQFLESYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLH 361 D YL PH R ++R Q+ Y S M MAAAF TV ++ EL++ I G + Sbjct: 335 DMYLAPHVRTLYTQIRNRALIQYFSPYVSADMHRMAAAFNTTVAALEDELTQLILEGLIS 394 Query: 362 CKIDKVAGVLETNRPDARNAFYQSTIKQG 448 ++D + +L D R+ ++ ++ G Sbjct: 395 ARVDSHSKILYARDVDQRSTTFEKSLLMG 423
>CSN1_ARATH (P45432) COP9 signalosome complex subunit 1 (CSN complex subunit 1)| (Constitutive photomorphogenesis protein 11) (FUSCA protein 6) (FUSCA6) Length = 441 Score = 73.9 bits (180), Expect = 4e-13 Identities = 42/150 (28%), Positives = 70/150 (46%) Frame = +2 Query: 2 LTSVITLDRVSLKQKVVDAPEILAVIGKVPHLSEFLNSLYDCQYKSFFVAFSGLTEQIKL 181 L ++ + DR LKQKV+D + VP + E +N Y +Y S + L + L Sbjct: 264 LCALASFDRSELKQKVIDNINFRNFLELVPDVRELINDFYSSRYASCLEYLASLKSNLLL 323 Query: 182 DRYLQPHFRYFMREVRTVVYSQFLESYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLH 361 D +L H ++R Q+ + SV + MA AF +V +++EL I ++ Sbjct: 324 DIHLHDHVDTLYDQIRKKALIQYTLPFVSVDLSRMADAFKTSVSGLEKELEALITDNQIQ 383 Query: 362 CKIDKVAGVLETNRPDARNAFYQSTIKQGD 451 +ID +L D RNA +Q ++ G+ Sbjct: 384 ARIDSHNKILYARHADQRNATFQKVLQMGN 413
>CSN1_DROME (Q9VVU5) COP9 signalosome complex subunit 1b (Signalosome subunit| 1b) (Dch1-2) Length = 525 Score = 68.6 bits (166), Expect = 2e-11 Identities = 36/149 (24%), Positives = 67/149 (44%) Frame = +2 Query: 2 LTSVITLDRVSLKQKVVDAPEILAVIGKVPHLSEFLNSLYDCQYKSFFVAFSGLTEQIKL 181 L ++ T DR LK+ V+ + + P L + + Y+ +Y S + + + + Sbjct: 324 LCALATFDRQELKRLVIASTSFKLFLELEPQLRDIIFKFYESKYASCLTLLDEIRDNLLV 383 Query: 182 DRYLQPHFRYFMREVRTVVYSQFLESYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLH 361 D Y+ PH ++R Q+ Y S M MA AF +V ++ E+ + I G++ Sbjct: 384 DMYIAPHVTTLYTKIRNRALIQYFSPYMSADMHKMAMAFNSSVGDLENEVMQLILDGQIQ 443 Query: 362 CKIDKVAGVLETNRPDARNAFYQSTIKQG 448 +ID +L D RN+ ++ + G Sbjct: 444 ARIDSHNKILFAKEADQRNSTFERALIMG 472
>CSN2_DROME (Q94899) COP9 signalosome complex subunit 2 (Signalosome subunit 2)| (Dch2) (Alien protein) Length = 444 Score = 41.2 bits (95), Expect = 0.003 Identities = 32/140 (22%), Positives = 62/140 (44%) Frame = +2 Query: 59 PEILAVIGKVPHLSEFLNSLYDCQYKSFFVAFSGLTEQIKLDRYLQPHFRYFMREVRTVV 238 PEILA ++ +NS + F I D++++ H +R +RT V Sbjct: 307 PEILA-------MTNLVNSYQNNDINEFETILRQHRSNIMADQFIREHIEDLLRNIRTQV 359 Query: 239 YSQFLESYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARN 418 + + YK++ + +A A + ++ L I + +ID+V VL+ ++ ++ Sbjct: 360 LIKLIRPYKNIAIPFIANALNIEPAEVESLLVSCILDDTIKGRIDQVNQVLQLDKINSSA 419 Query: 419 AFYQSTIKQGDFLLNRIQKL 478 + Y + K N+IQ L Sbjct: 420 SRYNALEKWS----NQIQSL 435
>PSD12_MOUSE (Q9D8W5) 26S proteasome non-ATPase regulatory subunit 12 (26S| proteasome regulatory subunit p55) Length = 455 Score = 38.5 bits (88), Expect = 0.018 Identities = 20/77 (25%), Positives = 39/77 (50%) Frame = +2 Query: 260 YKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQSTI 439 Y +TM+ MA ++VD + LS + + K+D++AGV+ RP N Sbjct: 369 YTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGVINFQRPKDPNNLLNDWS 428 Query: 440 KQGDFLLNRIQKLSRVI 490 ++ + L++ + K + +I Sbjct: 429 QKLNSLMSLVNKTTHLI 445
>PSD12_PONPY (Q5RBI3) 26S proteasome non-ATPase regulatory subunit 12 (26S| proteasome regulatory subunit p55) Length = 455 Score = 38.1 bits (87), Expect = 0.024 Identities = 19/77 (24%), Positives = 39/77 (50%) Frame = +2 Query: 260 YKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQSTI 439 Y +TM+ MA ++VD + LS + + K+D++AG++ RP N Sbjct: 369 YTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGIINFQRPKDPNNLLNDWS 428 Query: 440 KQGDFLLNRIQKLSRVI 490 ++ + L++ + K + +I Sbjct: 429 QKLNSLMSLVNKTTHLI 445
>PSD12_HUMAN (O00232) 26S proteasome non-ATPase regulatory subunit 12 (26S| proteasome regulatory subunit p55) Length = 455 Score = 38.1 bits (87), Expect = 0.024 Identities = 19/77 (24%), Positives = 39/77 (50%) Frame = +2 Query: 260 YKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQSTI 439 Y +TM+ MA ++VD + LS + + K+D++AG++ RP N Sbjct: 369 YTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGIINFQRPKDPNNLLNDWS 428 Query: 440 KQGDFLLNRIQKLSRVI 490 ++ + L++ + K + +I Sbjct: 429 QKLNSLMSLVNKTTHLI 445
>CSN1_SCHPO (O94308) COP9 signalosome complex subunit 1 (CSN complex subunit 1)| (SGN1) Length = 422 Score = 38.1 bits (87), Expect = 0.024 Identities = 29/126 (23%), Positives = 50/126 (39%) Frame = +2 Query: 2 LTSVITLDRVSLKQKVVDAPEILAVIGKVPHLSEFLNSLYDCQYKSFFVAFSGLTEQIKL 181 L ++ D L Q++ E A+ P L L + + +Y + L Sbjct: 233 LCALACWDHKRLIQELERNEEFNALSDLDPSLRRCLQAKCNRKYSLLLDTLQQNAQDYSL 292 Query: 182 DRYLQPHFRYFMREVRTVVYSQFLESYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLH 361 D YL P +R +L Y ++ +A F + +FI++ L I A KL+ Sbjct: 293 DMYLAPQLTNLFSLIRERSLLDYLIPYSALPFSKIAVDFHIDENFIEKNLLEIIEAKKLN 352 Query: 362 CKIDKV 379 K+D + Sbjct: 353 GKVDSL 358
>CRT_CLOAB (P52046) 3-hydroxybutyryl-CoA dehydratase (EC 4.2.1.55) (Crotonase)| Length = 261 Score = 30.4 bits (67), Expect = 4.9 Identities = 17/42 (40%), Positives = 25/42 (59%) Frame = +2 Query: 365 KIDKVAGVLETNRPDARNAFYQSTIKQGDFLLNRIQKLSRVI 490 K KVA V+ NRP A NA T+K+ D+++ I+ S V+ Sbjct: 10 KEGKVA-VVTINRPKALNALNSDTLKEMDYVIGEIENDSEVL 50
>TRME_PHOLL (Q7MAX1) tRNA modification GTPase trmE| Length = 454 Score = 30.0 bits (66), Expect = 6.5 Identities = 17/47 (36%), Positives = 28/47 (59%) Frame = +2 Query: 308 VDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQSTIKQG 448 +DF D+E+ F++ GK+ K+D+V LE R AR S +++G Sbjct: 174 IDFPDEEID-FLSDGKIEAKLDEVIVELERVRSQARQG---SLLREG 216
>DUS2_BACSU (O31546) Probable tRNA-dihydrouridine synthase 2 (EC 1.-.-.-)| Length = 325 Score = 30.0 bits (66), Expect = 6.5 Identities = 11/28 (39%), Positives = 21/28 (75%) Frame = +3 Query: 234 LSIRSSLSHTRV*QWRQWLPHLV*QLIS 317 +S+++ L +T V +WR+WL H++ Q I+ Sbjct: 140 VSVKTRLGYTDVDEWREWLTHILKQDIA 167
>SYC_STRMU (Q8DWA9) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA| ligase) (CysRS) Length = 447 Score = 30.0 bits (66), Expect = 6.5 Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 1/70 (1%) Frame = +2 Query: 188 YLQPHFRYFMREVRTVVYSQFLESYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCK 367 Y QP F V V+++FLE +++ E A G+TV F EL+++I +G Sbjct: 325 YEQP----FTATVDEAVFARFLEKFQAAMDEDFNTANGITVVF---ELAKWINSGHYDQT 377 Query: 368 I-DKVAGVLE 394 + DK A +L+ Sbjct: 378 VKDKFAEILQ 387 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 97,169,894 Number of Sequences: 219361 Number of extensions: 2008928 Number of successful extensions: 4961 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 4832 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4956 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6370891296 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
