ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags37k11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AJ006358.1|HVU6 Hordeum vulgare mRNA for ascorbate peroxidase 561 e-157
2gb|AF411227.1|AF411227 Hordeum vulgare ascorbate peroxidase mRNA... 498 e-138
3gb|AY254495.1| Oryza sativa (indica cultivar-group) ascorbate pe... 96 8e-17
4dbj|AK061841.1| Oryza sativa (japonica cultivar-group) cDNA clon... 96 8e-17
5dbj|D45423.1| Rice mRNA for ascorbate peroxidase, complete cds 96 8e-17
6ref|XM_470658.1| Oryza sativa (japonica cultivar-group), predic... 92 1e-15
7gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 86 7e-14
8dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 86 7e-14
9gb|AC134232.2| Oryza sativa (japonica cultivar-group) chromosome... 86 7e-14
10gb|BT017015.1| Zea mays clone EK07D2311G04.c mRNA sequence 78 2e-11
11gb|BT016458.1| Zea mays clone Contig291 mRNA sequence 76 7e-11
12gb|AC079363.19| Homo sapiens 12q BAC RP11-617J18 (Roswell Park C... 44 0.25
13gb|AC123711.14| Mus musculus chromosome 3, clone RP23-378N16, co... 42 1.0
14emb|AL591212.11| Human DNA sequence from clone RP11-236P24 on ch... 42 1.0
15emb|CR762439.7| Zebrafish DNA sequence from clone DKEY-261I20 in... 42 1.0
16gb|AC069158.6| Genomic Sequence for Oryza sativa, Nipponbare str... 42 1.0
17dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.0
18dbj|AP004153.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.0
19emb|AL831774.17| Mouse DNA sequence from clone RP23-301P13 on ch... 42 1.0
20emb|BX004759.7| Mouse DNA sequence from clone RP23-247H2 on chro... 42 1.0
21gb|AC138320.12| Mus musculus chromosome 5, clone RP23-181I1, com... 40 4.0
22ref|XM_614290.2| PREDICTED: Bos taurus similar to Myeloid/lympho... 40 4.0
23gb|AC119151.1| Homo sapiens chromosome 5 clone CTD-2582L22, comp... 40 4.0
24gb|AC106794.3| Homo sapiens chromosome 5 clone RP11-419C19, comp... 40 4.0
25dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.0
26emb|BX813309.2| Mouse DNA sequence from clone RP23-450P5 on chro... 40 4.0
27dbj|AP005199.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.0

>emb|AJ006358.1|HVU6 Hordeum vulgare mRNA for ascorbate peroxidase
          Length = 1050

 Score =  561 bits (283), Expect = e-157
 Identities = 285/286 (99%)
 Strand = Plus / Plus

                                                                        
Query: 1    tgagaaggctttcttcgaggactacaaggaggcacacctcaggctctccgaactggggta 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754  tgagaaggctttcttcgaggactacaaggaggcacacctcaggctctccgaactggggta 813

                                                                        
Query: 61   cgctgaagcctaagagcgtgtctactactgctgctactatgcgcgaccagggtgatcttg 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814  cgctgaagcctaagagcgtgtctactactgctgctactatgcgcgaccagggtgatcttg 873

                                                                        
Query: 121  ttctgcgtctagactaggggtcagtgtgagcccgcagactgctaagtaatcatctctgta 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 874  ttctgcgtctagactaggggtcagtgtgagcccgcagactgctaagtaatcatctctgta 933

                                                                        
Query: 181  ataatgtttgttggcttgaggccataccttgaacgctgncagtggtttggtgtgccgttg 240
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 934  ataatgtttgttggcttgaggccataccttgaacgctgtcagtggtttggtgtgccgttg 993

                                                          
Query: 241  tactcggtttgccttgatgccataaatctatcgtatgaaatgaatt 286
            ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 994  tactcggtttgccttgatgccataaatctatcgtatgaaatgaatt 1039



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>gb|AF411227.1|AF411227 Hordeum vulgare ascorbate peroxidase mRNA, partial cds
          Length = 676

 Score =  498 bits (251), Expect = e-138
 Identities = 280/286 (97%), Gaps = 3/286 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgagaaggctttcttcgaggactacaaggaggcacacctcaggctctccgaactggggta 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 tgagaaggcttttttcgaggactacaaggaggcacacctcaggctctccgaactggggta 450

                                                                       
Query: 61  cgctgaagcctaagagcgtgtctactactgctgctactatgcgcgaccagggtgatcttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 cgctgaagcctaagagcgtgtctactactgctgctactatgcgcgaccagggtgatcttg 510

                                                                       
Query: 121 ttctgcgtctagactaggggtcagtgtgagcccgcagactgctaagtaatcatctctgta 180
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 511 ttctgcgtctagactaggggtcagtgtgaacccgcagactgctaagtaatcatctctgta 570

                                                                       
Query: 181 ataatgtttgttggcttgaggccataccttgaacgctg-ncagtggtttggtgtgccgtt 239
           ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||
Sbjct: 571 ataatgtttgttggcttgaggccataccttgaacgctgttcagtggtttggtgtgccgtt 630

                                                         
Query: 240 gtact-cggtttg-ccttgatgccataaatctatcgtatgaaatga 283
           ||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct: 631 gtactccggtttgcccttgatgccataaatctatcgtatgaaatga 676



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>gb|AY254495.1| Oryza sativa (indica cultivar-group) ascorbate peroxidase mRNA,
           complete cds
          Length = 806

 Score = 95.6 bits (48), Expect = 8e-17
 Identities = 69/76 (90%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgagaaggctttcttcgaggactacaaggaggcacacctcaggctctccgaactggggta 60
           ||||||||||||||| || |||||||||||||| ||||||| ||||||||||||||||| 
Sbjct: 694 tgagaaggctttctttgaagactacaaggaggcccacctcaagctctccgaactggggtt 753

                           
Query: 61  cgctgaagcctaagag 76
           |||||| || ||||||
Sbjct: 754 cgctgatgcttaagag 769



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>dbj|AK061841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-E04, full
           insert sequence
          Length = 1070

 Score = 95.6 bits (48), Expect = 8e-17
 Identities = 69/76 (90%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgagaaggctttcttcgaggactacaaggaggcacacctcaggctctccgaactggggta 60
           ||||||||||||||| || |||||||||||||| ||||||| ||||||||||||||||| 
Sbjct: 746 tgagaaggctttctttgaagactacaaggaggcccacctcaagctctccgaactggggtt 805

                           
Query: 61  cgctgaagcctaagag 76
           |||||| || ||||||
Sbjct: 806 cgctgatgcttaagag 821



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>dbj|D45423.1| Rice mRNA for ascorbate peroxidase, complete cds
          Length = 983

 Score = 95.6 bits (48), Expect = 8e-17
 Identities = 69/76 (90%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgagaaggctttcttcgaggactacaaggaggcacacctcaggctctccgaactggggta 60
           ||||||||||||||| || |||||||||||||| ||||||| ||||||||||||||||| 
Sbjct: 720 tgagaaggctttctttgaagactacaaggaggcccacctcaagctctccgaactggggtt 779

                           
Query: 61  cgctgaagcctaagag 76
           |||||| || ||||||
Sbjct: 780 cgctgatgcttaagag 795



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>ref|XM_470658.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 753

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 61/66 (92%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgagaaggctttcttcgaggactacaaggaggcacacctcaggctctccgaactggggta 60
           ||||||||||||||| || |||||||||||||| ||||||| ||||||||||||||||| 
Sbjct: 681 tgagaaggctttctttgaagactacaaggaggcccacctcaagctctccgaactggggtt 740

                 
Query: 61  cgctga 66
           ||||||
Sbjct: 741 cgctga 746



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 85.7 bits (43), Expect = 7e-14
 Identities = 55/59 (93%)
 Strand = Plus / Plus

                                                                          
Query: 1       tgagaaggctttcttcgaggactacaaggaggcacacctcaggctctccgaactggggt 59
               ||||||||||||||| || |||||||||||||| ||||||| |||||||||||||||||
Sbjct: 9818245 tgagaaggctttctttgaagactacaaggaggcccacctcaagctctccgaactggggt 9818303



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 85.7 bits (43), Expect = 7e-14
 Identities = 55/59 (93%)
 Strand = Plus / Plus

                                                                          
Query: 1       tgagaaggctttcttcgaggactacaaggaggcacacctcaggctctccgaactggggt 59
               ||||||||||||||| || |||||||||||||| ||||||| |||||||||||||||||
Sbjct: 9816366 tgagaaggctttctttgaagactacaaggaggcccacctcaagctctccgaactggggt 9816424



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>gb|AC134232.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0013D02, complete sequence
          Length = 131883

 Score = 85.7 bits (43), Expect = 7e-14
 Identities = 55/59 (93%)
 Strand = Plus / Minus

                                                                        
Query: 1     tgagaaggctttcttcgaggactacaaggaggcacacctcaggctctccgaactggggt 59
             ||||||||||||||| || |||||||||||||| ||||||| |||||||||||||||||
Sbjct: 56252 tgagaaggctttctttgaagactacaaggaggcccacctcaagctctccgaactggggt 56194



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>gb|BT017015.1| Zea mays clone EK07D2311G04.c mRNA sequence
          Length = 1097

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 54/59 (91%)
 Strand = Plus / Plus

                                                                      
Query: 1   tgagaaggctttcttcgaggactacaaggaggcacacctcaggctctccgaactggggt 59
           ||||||||||||||| || |||||||| ||||| ||||||| |||||||||||||||||
Sbjct: 756 tgagaaggctttctttgatgactacaaagaggcccacctcaagctctccgaactggggt 814



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>gb|BT016458.1| Zea mays clone Contig291 mRNA sequence
          Length = 1269

 Score = 75.8 bits (38), Expect = 7e-11
 Identities = 59/66 (89%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgagaaggctttcttcgaggactacaaggaggcacacctcaggctctccgaactggggta 60
           ||||||||| ||||| || |||||||| ||||| ||||||| ||||||||||||||||||
Sbjct: 772 tgagaaggcattctttgatgactacaaagaggcccacctcaagctctccgaactggggta 831

                 
Query: 61  cgctga 66
            |||||
Sbjct: 832 tgctga 837



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>gb|AC079363.19| Homo sapiens 12q BAC RP11-617J18 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 193741

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 79     tgtctactactgctgctactat 100
              ||||||||||||||||||||||
Sbjct: 193268 tgtctactactgctgctactat 193247



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>gb|AC123711.14| Mus musculus chromosome 3, clone RP23-378N16, complete sequence
          Length = 209168

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 167   taatcatctctgtaataatgt 187
             |||||||||||||||||||||
Sbjct: 82406 taatcatctctgtaataatgt 82386



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>emb|AL591212.11| Human DNA sequence from clone RP11-236P24 on chromosome X Contains
            the 5' end of a novel gene, a novel gene, a ribosomal
            protein L27 (RPL27) pseudogene and a CpG island, complete
            sequence
          Length = 25233

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 82   ctactactgctgctactatgc 102
            |||||||||||||||||||||
Sbjct: 2483 ctactactgctgctactatgc 2503



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>emb|CR762439.7| Zebrafish DNA sequence from clone DKEY-261I20 in linkage group 13,
             complete sequence
          Length = 136285

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 167   taatcatctctgtaataatgtttgt 191
             ||||||||||||||||||| |||||
Sbjct: 30981 taatcatctctgtaataatctttgt 31005



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>gb|AC069158.6| Genomic Sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0049O12, from chromosome 2, complete sequence
          Length = 155154

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 82    ctactactgctgctactatgc 102
             |||||||||||||||||||||
Sbjct: 78735 ctactactgctgctactatgc 78755



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 82       ctactactgctgctactatgc 102
                |||||||||||||||||||||
Sbjct: 34426464 ctactactgctgctactatgc 34426444



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>dbj|AP004153.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1111_C07
          Length = 115190

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 82    ctactactgctgctactatgc 102
             |||||||||||||||||||||
Sbjct: 42706 ctactactgctgctactatgc 42686



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>emb|AL831774.17| Mouse DNA sequence from clone RP23-301P13 on chromosome 4, complete
              sequence
          Length = 163802

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 184    atgtttgttggcttgaggcca 204
              |||||||||||||||||||||
Sbjct: 163607 atgtttgttggcttgaggcca 163587



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>emb|BX004759.7| Mouse DNA sequence from clone RP23-247H2 on chromosome 4, complete
            sequence
          Length = 3994

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 184  atgtttgttggcttgaggcca 204
            |||||||||||||||||||||
Sbjct: 1805 atgtttgttggcttgaggcca 1785



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>gb|AC138320.12| Mus musculus chromosome 5, clone RP23-181I1, complete sequence
          Length = 230584

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 78     gtgtctactactgctgctactatg 101
              ||||||||||||||| ||||||||
Sbjct: 121895 gtgtctactactgctactactatg 121918



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>ref|XM_614290.2| PREDICTED: Bos taurus similar to Myeloid/lymphoid or mixed-lineage
           leukemia protein 3 homolog (Histone-lysine
           N-methyltransferase, H3 lysine-4 specific MLL3)
           (Homologous to ALR protein) (LOC534503), mRNA
          Length = 4465

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 140 gtcagtgtgagcccgcagactgct 163
           |||||||||||| |||||||||||
Sbjct: 511 gtcagtgtgagcacgcagactgct 534



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>gb|AC119151.1| Homo sapiens chromosome 5 clone CTD-2582L22, complete sequence
          Length = 176204

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 166    gtaatcatctctgtaataat 185
              ||||||||||||||||||||
Sbjct: 104448 gtaatcatctctgtaataat 104467



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>gb|AC106794.3| Homo sapiens chromosome 5 clone RP11-419C19, complete sequence
          Length = 200581

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 166    gtaatcatctctgtaataat 185
              ||||||||||||||||||||
Sbjct: 180069 gtaatcatctctgtaataat 180088



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                                
Query: 29       gaggcacacctcaggctctccgaactggggta 60
                ||||| ||||||| |||||| |||||||||||
Sbjct: 29530871 gaggcccacctcaagctctctgaactggggta 29530840



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>emb|BX813309.2| Mouse DNA sequence from clone RP23-450P5 on chromosome 2, complete
             sequence
          Length = 118443

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 161   gctaagtaatcatctctgtaataatgtt 188
             |||||||||||| || ||||||||||||
Sbjct: 55461 gctaagtaatcacctttgtaataatgtt 55488



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>dbj|AP005199.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0627E10
          Length = 163388

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 29    gaggcacacctcaggctctccgaactggggta 60
             ||||| ||||||| |||||| |||||||||||
Sbjct: 57543 gaggcccacctcaagctctctgaactggggta 57512


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,875,452
Number of Sequences: 3902068
Number of extensions: 1875452
Number of successful extensions: 33778
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33693
Number of HSP's gapped (non-prelim): 83
length of query: 302
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 280
effective length of database: 17,147,199,772
effective search space: 4801215936160
effective search space used: 4801215936160
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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