| Clone Name | bags37k11 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ006358.1|HVU6 Hordeum vulgare mRNA for ascorbate peroxidase Length = 1050 Score = 561 bits (283), Expect = e-157 Identities = 285/286 (99%) Strand = Plus / Plus Query: 1 tgagaaggctttcttcgaggactacaaggaggcacacctcaggctctccgaactggggta 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 754 tgagaaggctttcttcgaggactacaaggaggcacacctcaggctctccgaactggggta 813 Query: 61 cgctgaagcctaagagcgtgtctactactgctgctactatgcgcgaccagggtgatcttg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 814 cgctgaagcctaagagcgtgtctactactgctgctactatgcgcgaccagggtgatcttg 873 Query: 121 ttctgcgtctagactaggggtcagtgtgagcccgcagactgctaagtaatcatctctgta 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 874 ttctgcgtctagactaggggtcagtgtgagcccgcagactgctaagtaatcatctctgta 933 Query: 181 ataatgtttgttggcttgaggccataccttgaacgctgncagtggtttggtgtgccgttg 240 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 934 ataatgtttgttggcttgaggccataccttgaacgctgtcagtggtttggtgtgccgttg 993 Query: 241 tactcggtttgccttgatgccataaatctatcgtatgaaatgaatt 286 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 994 tactcggtttgccttgatgccataaatctatcgtatgaaatgaatt 1039
>gb|AF411227.1|AF411227 Hordeum vulgare ascorbate peroxidase mRNA, partial cds Length = 676 Score = 498 bits (251), Expect = e-138 Identities = 280/286 (97%), Gaps = 3/286 (1%) Strand = Plus / Plus Query: 1 tgagaaggctttcttcgaggactacaaggaggcacacctcaggctctccgaactggggta 60 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 391 tgagaaggcttttttcgaggactacaaggaggcacacctcaggctctccgaactggggta 450 Query: 61 cgctgaagcctaagagcgtgtctactactgctgctactatgcgcgaccagggtgatcttg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 451 cgctgaagcctaagagcgtgtctactactgctgctactatgcgcgaccagggtgatcttg 510 Query: 121 ttctgcgtctagactaggggtcagtgtgagcccgcagactgctaagtaatcatctctgta 180 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 511 ttctgcgtctagactaggggtcagtgtgaacccgcagactgctaagtaatcatctctgta 570 Query: 181 ataatgtttgttggcttgaggccataccttgaacgctg-ncagtggtttggtgtgccgtt 239 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 571 ataatgtttgttggcttgaggccataccttgaacgctgttcagtggtttggtgtgccgtt 630 Query: 240 gtact-cggtttg-ccttgatgccataaatctatcgtatgaaatga 283 ||||| ||||||| |||||||||||||||||||||||||||||||| Sbjct: 631 gtactccggtttgcccttgatgccataaatctatcgtatgaaatga 676
>gb|AY254495.1| Oryza sativa (indica cultivar-group) ascorbate peroxidase mRNA, complete cds Length = 806 Score = 95.6 bits (48), Expect = 8e-17 Identities = 69/76 (90%) Strand = Plus / Plus Query: 1 tgagaaggctttcttcgaggactacaaggaggcacacctcaggctctccgaactggggta 60 ||||||||||||||| || |||||||||||||| ||||||| ||||||||||||||||| Sbjct: 694 tgagaaggctttctttgaagactacaaggaggcccacctcaagctctccgaactggggtt 753 Query: 61 cgctgaagcctaagag 76 |||||| || |||||| Sbjct: 754 cgctgatgcttaagag 769
>dbj|AK061841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-E04, full insert sequence Length = 1070 Score = 95.6 bits (48), Expect = 8e-17 Identities = 69/76 (90%) Strand = Plus / Plus Query: 1 tgagaaggctttcttcgaggactacaaggaggcacacctcaggctctccgaactggggta 60 ||||||||||||||| || |||||||||||||| ||||||| ||||||||||||||||| Sbjct: 746 tgagaaggctttctttgaagactacaaggaggcccacctcaagctctccgaactggggtt 805 Query: 61 cgctgaagcctaagag 76 |||||| || |||||| Sbjct: 806 cgctgatgcttaagag 821
>dbj|D45423.1| Rice mRNA for ascorbate peroxidase, complete cds Length = 983 Score = 95.6 bits (48), Expect = 8e-17 Identities = 69/76 (90%) Strand = Plus / Plus Query: 1 tgagaaggctttcttcgaggactacaaggaggcacacctcaggctctccgaactggggta 60 ||||||||||||||| || |||||||||||||| ||||||| ||||||||||||||||| Sbjct: 720 tgagaaggctttctttgaagactacaaggaggcccacctcaagctctccgaactggggtt 779 Query: 61 cgctgaagcctaagag 76 |||||| || |||||| Sbjct: 780 cgctgatgcttaagag 795
>ref|XM_470658.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 753 Score = 91.7 bits (46), Expect = 1e-15 Identities = 61/66 (92%) Strand = Plus / Plus Query: 1 tgagaaggctttcttcgaggactacaaggaggcacacctcaggctctccgaactggggta 60 ||||||||||||||| || |||||||||||||| ||||||| ||||||||||||||||| Sbjct: 681 tgagaaggctttctttgaagactacaaggaggcccacctcaagctctccgaactggggtt 740 Query: 61 cgctga 66 |||||| Sbjct: 741 cgctga 746
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 85.7 bits (43), Expect = 7e-14 Identities = 55/59 (93%) Strand = Plus / Plus Query: 1 tgagaaggctttcttcgaggactacaaggaggcacacctcaggctctccgaactggggt 59 ||||||||||||||| || |||||||||||||| ||||||| ||||||||||||||||| Sbjct: 9818245 tgagaaggctttctttgaagactacaaggaggcccacctcaagctctccgaactggggt 9818303
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 85.7 bits (43), Expect = 7e-14 Identities = 55/59 (93%) Strand = Plus / Plus Query: 1 tgagaaggctttcttcgaggactacaaggaggcacacctcaggctctccgaactggggt 59 ||||||||||||||| || |||||||||||||| ||||||| ||||||||||||||||| Sbjct: 9816366 tgagaaggctttctttgaagactacaaggaggcccacctcaagctctccgaactggggt 9816424
>gb|AC134232.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0013D02, complete sequence Length = 131883 Score = 85.7 bits (43), Expect = 7e-14 Identities = 55/59 (93%) Strand = Plus / Minus Query: 1 tgagaaggctttcttcgaggactacaaggaggcacacctcaggctctccgaactggggt 59 ||||||||||||||| || |||||||||||||| ||||||| ||||||||||||||||| Sbjct: 56252 tgagaaggctttctttgaagactacaaggaggcccacctcaagctctccgaactggggt 56194
>gb|BT017015.1| Zea mays clone EK07D2311G04.c mRNA sequence Length = 1097 Score = 77.8 bits (39), Expect = 2e-11 Identities = 54/59 (91%) Strand = Plus / Plus Query: 1 tgagaaggctttcttcgaggactacaaggaggcacacctcaggctctccgaactggggt 59 ||||||||||||||| || |||||||| ||||| ||||||| ||||||||||||||||| Sbjct: 756 tgagaaggctttctttgatgactacaaagaggcccacctcaagctctccgaactggggt 814
>gb|BT016458.1| Zea mays clone Contig291 mRNA sequence Length = 1269 Score = 75.8 bits (38), Expect = 7e-11 Identities = 59/66 (89%) Strand = Plus / Plus Query: 1 tgagaaggctttcttcgaggactacaaggaggcacacctcaggctctccgaactggggta 60 ||||||||| ||||| || |||||||| ||||| ||||||| |||||||||||||||||| Sbjct: 772 tgagaaggcattctttgatgactacaaagaggcccacctcaagctctccgaactggggta 831 Query: 61 cgctga 66 ||||| Sbjct: 832 tgctga 837
>gb|AC079363.19| Homo sapiens 12q BAC RP11-617J18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 193741 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Minus Query: 79 tgtctactactgctgctactat 100 |||||||||||||||||||||| Sbjct: 193268 tgtctactactgctgctactat 193247
>gb|AC123711.14| Mus musculus chromosome 3, clone RP23-378N16, complete sequence Length = 209168 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 167 taatcatctctgtaataatgt 187 ||||||||||||||||||||| Sbjct: 82406 taatcatctctgtaataatgt 82386
>emb|AL591212.11| Human DNA sequence from clone RP11-236P24 on chromosome X Contains the 5' end of a novel gene, a novel gene, a ribosomal protein L27 (RPL27) pseudogene and a CpG island, complete sequence Length = 25233 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 82 ctactactgctgctactatgc 102 ||||||||||||||||||||| Sbjct: 2483 ctactactgctgctactatgc 2503
>emb|CR762439.7| Zebrafish DNA sequence from clone DKEY-261I20 in linkage group 13, complete sequence Length = 136285 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 167 taatcatctctgtaataatgtttgt 191 ||||||||||||||||||| ||||| Sbjct: 30981 taatcatctctgtaataatctttgt 31005
>gb|AC069158.6| Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0049O12, from chromosome 2, complete sequence Length = 155154 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 82 ctactactgctgctactatgc 102 ||||||||||||||||||||| Sbjct: 78735 ctactactgctgctactatgc 78755
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 82 ctactactgctgctactatgc 102 ||||||||||||||||||||| Sbjct: 34426464 ctactactgctgctactatgc 34426444
>dbj|AP004153.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1111_C07 Length = 115190 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 82 ctactactgctgctactatgc 102 ||||||||||||||||||||| Sbjct: 42706 ctactactgctgctactatgc 42686
>emb|AL831774.17| Mouse DNA sequence from clone RP23-301P13 on chromosome 4, complete sequence Length = 163802 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 184 atgtttgttggcttgaggcca 204 ||||||||||||||||||||| Sbjct: 163607 atgtttgttggcttgaggcca 163587
>emb|BX004759.7| Mouse DNA sequence from clone RP23-247H2 on chromosome 4, complete sequence Length = 3994 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 184 atgtttgttggcttgaggcca 204 ||||||||||||||||||||| Sbjct: 1805 atgtttgttggcttgaggcca 1785
>gb|AC138320.12| Mus musculus chromosome 5, clone RP23-181I1, complete sequence Length = 230584 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 78 gtgtctactactgctgctactatg 101 ||||||||||||||| |||||||| Sbjct: 121895 gtgtctactactgctactactatg 121918
>ref|XM_614290.2| PREDICTED: Bos taurus similar to Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog (Histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3) (Homologous to ALR protein) (LOC534503), mRNA Length = 4465 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 140 gtcagtgtgagcccgcagactgct 163 |||||||||||| ||||||||||| Sbjct: 511 gtcagtgtgagcacgcagactgct 534
>gb|AC119151.1| Homo sapiens chromosome 5 clone CTD-2582L22, complete sequence Length = 176204 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 166 gtaatcatctctgtaataat 185 |||||||||||||||||||| Sbjct: 104448 gtaatcatctctgtaataat 104467
>gb|AC106794.3| Homo sapiens chromosome 5 clone RP11-419C19, complete sequence Length = 200581 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 166 gtaatcatctctgtaataat 185 |||||||||||||||||||| Sbjct: 180069 gtaatcatctctgtaataat 180088
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 4.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 29 gaggcacacctcaggctctccgaactggggta 60 ||||| ||||||| |||||| ||||||||||| Sbjct: 29530871 gaggcccacctcaagctctctgaactggggta 29530840
>emb|BX813309.2| Mouse DNA sequence from clone RP23-450P5 on chromosome 2, complete sequence Length = 118443 Score = 40.1 bits (20), Expect = 4.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 161 gctaagtaatcatctctgtaataatgtt 188 |||||||||||| || |||||||||||| Sbjct: 55461 gctaagtaatcacctttgtaataatgtt 55488
>dbj|AP005199.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0627E10 Length = 163388 Score = 40.1 bits (20), Expect = 4.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 29 gaggcacacctcaggctctccgaactggggta 60 ||||| ||||||| |||||| ||||||||||| Sbjct: 57543 gaggcccacctcaagctctctgaactggggta 57512 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,875,452 Number of Sequences: 3902068 Number of extensions: 1875452 Number of successful extensions: 33778 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 27 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 33693 Number of HSP's gapped (non-prelim): 83 length of query: 302 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 280 effective length of database: 17,147,199,772 effective search space: 4801215936160 effective search space used: 4801215936160 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)