ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bags37j15 |
|---|---|
| Clone Library Name | barley_pub |
>TAD3_YEAST (Q9URQ3) tRNA-specific adenosine deaminase 3 (EC 3.5.4.-)| (tRNA-specific adenosine-34 deaminase subunit TAD3) Length = 322 Score = 60.8 bits (146), Expect = 3e-09 Identities = 32/79 (40%), Positives = 44/79 (55%), Gaps = 4/79 (5%) Frame = +2 Query: 290 YLCTGFDIYLVWEPCTMCAMALVHQRFKRVFYAFPNPVTGAL----GSVYRLHGKKSLNH 457 YLC +D+YL EPC+MC+MAL+H R +RV + TG+L G Y ++ K LN Sbjct: 240 YLCLDYDVYLTHEPCSMCSMALIHSRVRRVVFLTEMQRTGSLKLTSGDGYCMNDNKQLNS 299 Query: 458 HYSVFRIKVPEAYLNGSTD 514 Y F+ + E Y G D Sbjct: 300 TYEAFQ-WIGEEYPVGQVD 317
>TADA_HAEIN (P44931) tRNA-specific adenosine deaminase (EC 3.5.4.-)| Length = 173 Score = 51.2 bits (121), Expect = 3e-06 Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 5/82 (6%) Frame = +2 Query: 239 QSTHPAHSSDLPERN-----RPYLCTGFDIYLVWEPCTMCAMALVHQRFKRVFYAFPNPV 403 QS AH+ + RN + Y +Y+ EPCTMCA A++H R KR+ + + Sbjct: 55 QSDPTAHAEIIALRNGAKNIQNYRLLNSTLYVTLEPCTMCAGAILHSRIKRLVFGASDYK 114 Query: 404 TGALGSVYRLHGKKSLNHHYSV 469 TGA+GS + +NH V Sbjct: 115 TGAIGSRFHFFDDYKMNHTLEV 136
>Y831_RICPR (Q9ZCC6) Hypothetical protein RP831| Length = 148 Score = 46.2 bits (108), Expect = 9e-05 Identities = 21/56 (37%), Positives = 30/56 (53%) Frame = +2 Query: 305 FDIYLVWEPCTMCAMALVHQRFKRVFYAFPNPVTGALGSVYRLHGKKSLNHHYSVF 472 +DIY+ EPC MCA A+ H R KR+FY + GA+ S R S + ++ Sbjct: 69 YDIYVTLEPCAMCASAISHSRLKRLFYGASDSKHGAVESNLRYFNSNSCFYRPEIY 124
>TADA_SHIFL (P68397) tRNA-specific adenosine deaminase (EC 3.5.4.-)| Length = 178 Score = 44.7 bits (104), Expect = 3e-04 Identities = 22/63 (34%), Positives = 34/63 (53%) Frame = +2 Query: 311 IYLVWEPCTMCAMALVHQRFKRVFYAFPNPVTGALGSVYRLHGKKSLNHHYSVFRIKVPE 490 +Y+ EPC MCA A++H R RV + + TGA GS+ + +NH R+++ E Sbjct: 91 LYVTLEPCVMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGMNH-----RVEITE 145 Query: 491 AYL 499 L Sbjct: 146 GIL 148
>TADA_ECOLI (P68398) tRNA-specific adenosine deaminase (EC 3.5.4.-)| Length = 178 Score = 44.7 bits (104), Expect = 3e-04 Identities = 22/63 (34%), Positives = 34/63 (53%) Frame = +2 Query: 311 IYLVWEPCTMCAMALVHQRFKRVFYAFPNPVTGALGSVYRLHGKKSLNHHYSVFRIKVPE 490 +Y+ EPC MCA A++H R RV + + TGA GS+ + +NH R+++ E Sbjct: 91 LYVTLEPCVMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGMNH-----RVEITE 145 Query: 491 AYL 499 L Sbjct: 146 GIL 148
>TADA_ECOL6 (Q8FF24) tRNA-specific adenosine deaminase (EC 3.5.4.-)| Length = 178 Score = 44.7 bits (104), Expect = 3e-04 Identities = 22/63 (34%), Positives = 34/63 (53%) Frame = +2 Query: 311 IYLVWEPCTMCAMALVHQRFKRVFYAFPNPVTGALGSVYRLHGKKSLNHHYSVFRIKVPE 490 +Y+ EPC MCA A++H R RV + + TGA GS+ + +NH R+++ E Sbjct: 91 LYVTLEPCVMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGMNH-----RVEITE 145 Query: 491 AYL 499 L Sbjct: 146 GIL 148
>TADA_ECO57 (Q8XA44) tRNA-specific adenosine deaminase (EC 3.5.4.-)| Length = 178 Score = 44.7 bits (104), Expect = 3e-04 Identities = 22/63 (34%), Positives = 34/63 (53%) Frame = +2 Query: 311 IYLVWEPCTMCAMALVHQRFKRVFYAFPNPVTGALGSVYRLHGKKSLNHHYSVFRIKVPE 490 +Y+ EPC MCA A++H R RV + + TGA GS+ + +NH R+++ E Sbjct: 91 LYVTLEPCVMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGMNH-----RVEITE 145 Query: 491 AYL 499 L Sbjct: 146 GIL 148
>TADA_SALTY (Q7CQ08) tRNA-specific adenosine deaminase (EC 3.5.4.-)| Length = 183 Score = 44.7 bits (104), Expect = 3e-04 Identities = 20/53 (37%), Positives = 29/53 (54%) Frame = +2 Query: 311 IYLVWEPCTMCAMALVHQRFKRVFYAFPNPVTGALGSVYRLHGKKSLNHHYSV 469 +Y+ EPC MCA A+VH R RV + + TGA GS+ + +NH + Sbjct: 91 LYVTLEPCVMCAGAMVHSRIGRVVFGARDAKTGAAGSLIDVLHHPGMNHRVEI 143
>TADA_SALTI (Q8XGY4) tRNA-specific adenosine deaminase (EC 3.5.4.-)| Length = 183 Score = 44.7 bits (104), Expect = 3e-04 Identities = 20/53 (37%), Positives = 29/53 (54%) Frame = +2 Query: 311 IYLVWEPCTMCAMALVHQRFKRVFYAFPNPVTGALGSVYRLHGKKSLNHHYSV 469 +Y+ EPC MCA A+VH R RV + + TGA GS+ + +NH + Sbjct: 91 LYVTLEPCVMCAGAMVHSRIGRVVFGARDAKTGAAGSLIDVLHHPGMNHRVEI 143
>TADA_AQUAE (O67050) tRNA-specific adenosine deaminase (EC 3.5.4.-)| Length = 151 Score = 42.4 bits (98), Expect = 0.001 Identities = 21/59 (35%), Positives = 35/59 (59%) Frame = +2 Query: 281 NRPYLCTGFDIYLVWEPCTMCAMALVHQRFKRVFYAFPNPVTGALGSVYRLHGKKSLNH 457 N YL G ++Y+ EPC MC+ ALV R ++V ++ + G + SV+ + + +LNH Sbjct: 66 NTKYL-EGCELYVTLEPCIMCSYALVLSRIEKVIFSALDKKHGGVVSVFNILDEPTLNH 123
>YAAJ_BACSU (P21335) Hypothetical protein yaaJ| Length = 161 Score = 39.3 bits (90), Expect = 0.011 Identities = 19/56 (33%), Positives = 30/56 (53%) Frame = +2 Query: 302 GFDIYLVWEPCTMCAMALVHQRFKRVFYAFPNPVTGALGSVYRLHGKKSLNHHYSV 469 G +Y+ EPC MCA A+V R ++V + +P G G++ L ++ NH V Sbjct: 73 GATLYVTLEPCPMCAGAVVLSRVEKVVFGAFDPKGGCSGTLMNLLQEERFNHQAEV 128
>TILS_DEIRA (Q9RV23) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)| (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) Length = 582 Score = 37.7 bits (86), Expect = 0.031 Identities = 39/142 (27%), Positives = 55/142 (38%), Gaps = 6/142 (4%) Frame = +2 Query: 17 GARXQKTLPSEGGFLWHPLWHAAVVAIENAAERDRMTFPASTSSTTQPKLNGDVDNCSDD 196 GAR LP++ H A+ + AAER + A + +D Sbjct: 392 GARESLGLPADP---LHAAMGEALALAQQAAERQEVPVGAVVLN-------------ADG 435 Query: 197 EPAKRLKIVANDEEQSTHPAHSSDLPER----NRPYL--CTGFDIYLVWEPCTMCAMALV 358 E R + + ++ T A + L E PYL CT + + EPC MC A + Sbjct: 436 EIVGRGRNTSREDGDMTCHAELAALREAAAGLGTPYLSDCT---LVVTLEPCPMCLGAAL 492 Query: 359 HQRFKRVFYAFPNPVTGALGSV 424 R + Y NP GALG V Sbjct: 493 EARIGHIVYGAANPKAGALGGV 514
>Y209_STRP1 (P68999) Hypothetical protein SPy0209/M5005_Spy0179| Length = 171 Score = 37.7 bits (86), Expect = 0.031 Identities = 18/55 (32%), Positives = 28/55 (50%) Frame = +2 Query: 311 IYLVWEPCTMCAMALVHQRFKRVFYAFPNPVTGALGSVYRLHGKKSLNHHYSVFR 475 +++ EPC MC+ A+ R V Y N G + S+Y++ + LNH V R Sbjct: 80 LFVTIEPCVMCSGAIGLARIPHVIYGASNQKFGGVDSLYQILTDERLNHRVQVER 134
>Y196_STRP8 (Q8P2R7) Hypothetical protein spyM18_0196| Length = 159 Score = 37.0 bits (84), Expect = 0.053 Identities = 18/55 (32%), Positives = 27/55 (49%) Frame = +2 Query: 311 IYLVWEPCTMCAMALVHQRFKRVFYAFPNPVTGALGSVYRLHGKKSLNHHYSVFR 475 +++ EPC MC+ A+ R V Y N G S+Y++ + LNH V R Sbjct: 80 LFVTIEPCVMCSGAIGLARIPHVIYGASNQKFGGADSLYQILTDERLNHRVQVER 134
>Y214_STRP6 (Q5XE14) Hypothetical protein M6_Spy0214| Length = 171 Score = 37.0 bits (84), Expect = 0.053 Identities = 18/55 (32%), Positives = 27/55 (49%) Frame = +2 Query: 311 IYLVWEPCTMCAMALVHQRFKRVFYAFPNPVTGALGSVYRLHGKKSLNHHYSVFR 475 +++ EPC MC+ A+ R V Y N G S+Y++ + LNH V R Sbjct: 80 LFVTIEPCVMCSGAIGLARIPHVIYGASNQKFGGADSLYQILTDERLNHRVQVER 134
>Y153_STRP3 (Q8K8Q9) Hypothetical protein SpyM3_0153/SPs0158| Length = 171 Score = 37.0 bits (84), Expect = 0.053 Identities = 18/55 (32%), Positives = 27/55 (49%) Frame = +2 Query: 311 IYLVWEPCTMCAMALVHQRFKRVFYAFPNPVTGALGSVYRLHGKKSLNHHYSVFR 475 +++ EPC MC+ A+ R V Y N G S+Y++ + LNH V R Sbjct: 80 LFVTIEPCVMCSGAIGLARIPHVIYGASNQKFGGADSLYQILTDERLNHRVQVER 134
>RIBD_CHLPN (Q9Z735) Riboflavin biosynthesis protein ribD [Includes:| Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) (Riboflavin-specific deaminase); 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) (HTP reductase)] Length = 376 Score = 32.7 bits (73), Expect = 1.00 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 6/54 (11%) Frame = +2 Query: 257 HSSDLPERNRPYLCTGFDIYLVWEPCT------MCAMALVHQRFKRVFYAFPNP 400 H+ +L +N +G D+Y+ EPC+ CA L+ + RVF A +P Sbjct: 55 HAEELAIQNASMPISGSDVYVSLEPCSHFGSCPPCANLLIKHKVSRVFVALVDP 108
>RIBD_BACSU (P17618) Riboflavin biosynthesis protein ribD [Includes:| Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) (Riboflavin-specific deaminase); 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) (HTP reductase)] Length = 361 Score = 32.3 bits (72), Expect = 1.3 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 8/47 (17%) Frame = +2 Query: 302 GFDIYLVWEPCT------MCAMALVHQRFKRVFYAF--PNPVTGALG 418 G DIY+ EPC+ CA +++ KRVF A PNP+ G Sbjct: 64 GADIYVTLEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGRG 110
>M10L1_MOUSE (Q99MV5) Putative helicase Mov10l1 (EC 3.6.1.-) (Moloney leukemia| virus 10-like protein 1) (MOV10-like 1) (Cardiac helicase activated by MEF2 protein) (Cardiac-specific RNA helicase) Length = 1187 Score = 32.0 bits (71), Expect = 1.7 Identities = 17/42 (40%), Positives = 22/42 (52%) Frame = +2 Query: 410 ALGSVYRLHGKKSLNHHYSVFRIKVPEAYLNGSTDCSEKGCS 535 A GSV SLNHH ++PE+ L ST+ S GC+ Sbjct: 281 AAGSVPEGENVNSLNHHREDKTDEIPESRLANSTEISPDGCA 322
>RIBD_BACAM (P70814) Riboflavin biosynthesis protein ribD [Includes:| Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) (Riboflavin-specific deaminase); 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) (HTP reductase)] Length = 371 Score = 30.8 bits (68), Expect = 3.8 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 8/50 (16%) Frame = +2 Query: 293 LCTGFDIYLVWEPCT------MCAMALVHQRFKRVFYAF--PNPVTGALG 418 L G D+Y+ EPC+ CA ++ KRVF A PNP+ G Sbjct: 61 LAKGADLYVTLEPCSHYGKTPPCAELIMKSGIKRVFIAVEDPNPLVAGKG 110
>PQE1_CAEEL (Q10124) Putative RNA exonuclease pqe-1 (PolyQ enhancer protein 1)| Length = 1647 Score = 30.8 bits (68), Expect = 3.8 Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 7/68 (10%) Frame = +2 Query: 104 AAERDRMTFPASTSSTTQPKLNGDVDNCSDDEPAK-----RLKIVANDEEQS--THPAHS 262 AA + MT P T + + G+ + D+ P K R KIV+NDEE+ HP Sbjct: 764 AAATETMTSP-KTKNNVIVETEGEQEEDEDEIPIKKSKKRRAKIVSNDEEEEPVRHPKRR 822 Query: 263 SDLPERNR 286 SD R Sbjct: 823 SDEKREKR 830
>Y236_BUCBP (Q89AM8) Hypothetical protein bbp_236| Length = 162 Score = 30.4 bits (67), Expect = 4.9 Identities = 10/25 (40%), Positives = 16/25 (64%) Frame = +2 Query: 311 IYLVWEPCTMCAMALVHQRFKRVFY 385 +Y+ EPC MC A++H R R+ + Sbjct: 77 LYVTLEPCIMCYGAIIHSRISRLVF 101
>Y246_BUCAP (Q8K9R4) Hypothetical protein BUsg246| Length = 151 Score = 29.6 bits (65), Expect = 8.4 Identities = 10/32 (31%), Positives = 18/32 (56%) Frame = +2 Query: 290 YLCTGFDIYLVWEPCTMCAMALVHQRFKRVFY 385 Y +Y+ +PC MC A+++ R KR+ + Sbjct: 71 YRLVNTTLYVTLQPCMMCCGAIINSRIKRLVF 102 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 94,448,271 Number of Sequences: 219361 Number of extensions: 1858748 Number of successful extensions: 4993 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 4852 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4990 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6370891296 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
