ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags37j12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY815843.1| Schistosoma japonicum SJCHGC07486 protein mRNA, c... 46 0.10
2gb|AC111034.11| Mus musculus chromosome 8, clone RP23-202K1, com... 44 0.40
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 44 0.40
4gb|AC090485.3|AC090485 Genomic Sequence for Oryza sativa, Nippon... 44 0.40
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.40
6gb|AC139190.1| Pan troglodytes BAC clone RP43-12I19 from Y, comp... 42 1.6
7emb|AL021939.1|HS352A20 Human DNA sequence from clone RP3-352A20... 42 1.6
8dbj|BS000606.1| Pan troglodytes chromosome Y clone:PTBY-009G03, ... 42 1.6
9dbj|BS000551.1| Pan troglodytes chromosome Y clone:PTB-295A05, c... 42 1.6
10gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 42 1.6
11dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
12gb|AC009233.3|AC009233 Homo sapiens BAC clone RP11-356K22 from Y... 42 1.6
13dbj|AP005395.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
14dbj|AK071855.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.6
15emb|AL928922.7| Mouse DNA sequence from clone RP23-431J22 on chr... 42 1.6
16gb|AF143314.1|PTEN3 Homo sapiens PTEN (PTEN) gene, exons 3 throu... 40 6.2
17gb|AC148869.1| Pan troglodytes fosmid clone CH1251-3642E8 from Y... 40 6.2
18gb|AC134440.3| Mus musculus BAC clone RP24-528L1 from chromosome... 40 6.2
19gb|AC146797.2| Xenopus tropicalis clone CH216-118J4, complete se... 40 6.2
20emb|AL163218.2|HS21C018 Homo sapiens chromosome 21 segment HS21C018 40 6.2
21emb|AL590065.3| Human DNA sequence from clone RP11-307A17 on chr... 40 6.2
22emb|AL589947.3| Human DNA sequence from clone RP11-127B16 on chr... 40 6.2
23emb|AL954167.4| Mouse DNA sequence from clone RP23-300M3 on chro... 40 6.2
24gb|AC109352.3| Homo sapiens BAC clone RP11-489P20 from 4, comple... 40 6.2
25gb|AC100779.2| Homo sapiens chromosome 18, clone RP11-761D8, com... 40 6.2
26gb|AC025479.8| Homo sapiens chromosome 8, clone RP11-358J8, comp... 40 6.2
27gb|AC022016.7| Homo sapiens chromosome 10 clone RP11-165M8, comp... 40 6.2
28gb|AC063965.8| Homo sapiens chromosome 10 clone RP11-380G5, comp... 40 6.2
29gb|AC091039.7| Homo sapiens chromosome 18, clone RP11-403A5, com... 40 6.2
30gb|AC107828.16| Mus musculus chromosome 18, clone RP23-213N4, co... 40 6.2
31gb|DQ073384.1| Homo sapiens phosphatase and tensin homolog (muta... 40 6.2
32gb|AC154177.2| Mus musculus BAC clone RP23-465J20 from chromosom... 40 6.2
33dbj|BS000045.1| Pan troglodytes chromosome 22 clone:RP43-179P23,... 40 6.2
34gb|AF240627.1|AF240627 Homo sapiens chromosome 21 map 21q21 clon... 40 6.2
35gb|AF067844.1|AF067844 Homo sapiens chromosome 10 clone PTEN, co... 40 6.2
36emb|CT485605.3| RP43-010N04, complete sequence 40 6.2
37dbj|AP005366.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 40 6.2
38gb|BC086272.1| Xenopus laevis hypothetical LOC495683, mRNA (cDNA... 40 6.2
39emb|CT485994.3| RP43-077B08, complete sequence 40 6.2 
>gb|AY815843.1| Schistosoma japonicum SJCHGC07486 protein mRNA, complete cds
          Length = 580

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 348 aagctgcagatcaagatgtatca 370
           |||||||||||||||||||||||
Sbjct: 168 aagctgcagatcaagatgtatca 190
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>gb|AC111034.11| Mus musculus chromosome 8, clone RP23-202K1, complete sequence
          Length = 200303

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 71     tacatatacgtgcatatgcatg 92
              ||||||||||||||||||||||
Sbjct: 111391 tacatatacgtgcatatgcatg 111370
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 242     gttgctgcatggttaactgctggatc 267
               |||||||||||||||||| |||||||
Sbjct: 2571744 gttgctgcatggttaactactggatc 2571769
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>gb|AC090485.3|AC090485 Genomic Sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0067N01, from chromosome 3, complete sequence
          Length = 159636

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 242   gttgctgcatggttaactgctggatc 267
             |||||||||||||||||| |||||||
Sbjct: 98350 gttgctgcatggttaactactggatc 98325
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 242     gttgctgcatggttaactgctggatc 267
               |||||||||||||||||| |||||||
Sbjct: 2571854 gttgctgcatggttaactactggatc 2571879
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>gb|AC139190.1| Pan troglodytes BAC clone RP43-12I19 from Y, complete sequence
          Length = 159298

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 11    tggcctctgaaactttttcctcccagcct 39
             ||||||| |||||||||||| ||||||||
Sbjct: 52887 tggcctcagaaactttttccacccagcct 52915
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>emb|AL021939.1|HS352A20 Human DNA sequence from clone RP3-352A20 on chromosome 6q24.1-25.1
            Contains a novel pseudogene and the 3' end of the ALDH8A1
            gene for aldehyde dehydrogenase 8 family, member A1,
            complete sequence
          Length = 144759

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 21   aactttttcctcccagcctcc 41
            |||||||||||||||||||||
Sbjct: 1279 aactttttcctcccagcctcc 1299
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>dbj|BS000606.1| Pan troglodytes chromosome Y clone:PTBY-009G03, complete sequences
          Length = 113454

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 11     tggcctctgaaactttttcctcccagcct 39
              ||||||| |||||||||||| ||||||||
Sbjct: 109357 tggcctcagaaactttttccacccagcct 109385
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>dbj|BS000551.1| Pan troglodytes chromosome Y clone:PTB-295A05, complete sequences
          Length = 161601

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 11   tggcctctgaaactttttcctcccagcct 39
            ||||||| |||||||||||| ||||||||
Sbjct: 6366 tggcctcagaaactttttccacccagcct 6394
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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 11       tggcctctgaaactttttcctcccagcct 39
                ||||||| |||||||||||| ||||||||
Sbjct: 15501517 tggcctcagaaactttttccacccagcct 15501489
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 1        tccgctacggtggcctctgaa 21
                |||||||||||||||||||||
Sbjct: 28245837 tccgctacggtggcctctgaa 28245817
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>gb|AC009233.3|AC009233 Homo sapiens BAC clone RP11-356K22 from Y, complete sequence
          Length = 195439

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 11     tggcctctgaaactttttcctcccagcct 39
              ||||||| |||||||||||| ||||||||
Sbjct: 111980 tggcctcagaaactttttccacccagcct 112008
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>dbj|AP005395.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0623A10
          Length = 156517

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 1     tccgctacggtggcctctgaa 21
             |||||||||||||||||||||
Sbjct: 43866 tccgctacggtggcctctgaa 43846
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>dbj|AK071855.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023115P14, full
           insert sequence
          Length = 773

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 1   tccgctacggtggcctctgaa 21
           |||||||||||||||||||||
Sbjct: 416 tccgctacggtggcctctgaa 436
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>emb|AL928922.7| Mouse DNA sequence from clone RP23-431J22 on chromosome 2, complete
              sequence
          Length = 203047

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 72     acatatacgtgcatatgcatg 92
              |||||||||||||||||||||
Sbjct: 110975 acatatacgtgcatatgcatg 110955
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>gb|AF143314.1|PTEN3 Homo sapiens PTEN (PTEN) gene, exons 3 through 5
          Length = 14745

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 387  tttcctctatgaaaaatctg 406
            ||||||||||||||||||||
Sbjct: 8881 tttcctctatgaaaaatctg 8862
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>gb|AC148869.1| Pan troglodytes fosmid clone CH1251-3642E8 from Y, complete sequence
          Length = 39487

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 387  tttcctctatgaaaaatctg 406
            ||||||||||||||||||||
Sbjct: 1176 tttcctctatgaaaaatctg 1195
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>gb|AC134440.3| Mus musculus BAC clone RP24-528L1 from chromosome 18, complete sequence
          Length = 152907

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 370    aagccatgctctctgtttttcctc 393
              |||||||| |||||||||||||||
Sbjct: 150075 aagccatggtctctgtttttcctc 150052
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>gb|AC146797.2| Xenopus tropicalis clone CH216-118J4, complete sequence
          Length = 154944

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 391   ctctatgaaaaatctgtgtt 410
             ||||||||||||||||||||
Sbjct: 37664 ctctatgaaaaatctgtgtt 37683
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>emb|AL163218.2|HS21C018 Homo sapiens chromosome 21 segment HS21C018
          Length = 340000

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 284    tatgtgtttttggttgcctt 303
              ||||||||||||||||||||
Sbjct: 205347 tatgtgtttttggttgcctt 205366
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>emb|AL590065.3| Human DNA sequence from clone RP11-307A17 on chromosome X Contains a
              novel gene (MGC34831) and the 5' end of a novel gene(
              FLJ36601), complete sequence
          Length = 187386

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 338    tatcctccttaagctgcaga 357
              ||||||||||||||||||||
Sbjct: 108713 tatcctccttaagctgcaga 108732
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>emb|AL589947.3| Human DNA sequence from clone RP11-127B16 on chromosome 6 Contaims a
             novel gene and a CpG island, complete sequence
          Length = 143715

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Minus

                                         
Query: 357   atcaagatgta-tcaagccatgctctct 383
             ||||||||||| ||||||||||||||||
Sbjct: 67307 atcaagatgtagtcaagccatgctctct 67280
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>emb|AL954167.4| Mouse DNA sequence from clone RP23-300M3 on chromosome 11 Contains a zinc
              finger protein pseudogene, complete sequence
          Length = 190351

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 13     gcctctgaaactttttcctc 32
              ||||||||||||||||||||
Sbjct: 112036 gcctctgaaactttttcctc 112017
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>gb|AC109352.3| Homo sapiens BAC clone RP11-489P20 from 4, complete sequence
          Length = 157443

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 71     tacatatacgtgcatatgca 90
              ||||||||||||||||||||
Sbjct: 141948 tacatatacgtgcatatgca 141967
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>gb|AC100779.2| Homo sapiens chromosome 18, clone RP11-761D8, complete sequence
          Length = 196261

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 29/31 (93%), Gaps = 2/31 (6%)
 Strand = Plus / Plus

                                             
Query: 281    gtctatgtgtttttg--gttgccttttttga 309
              |||||||||||||||  ||||||||||||||
Sbjct: 169320 gtctatgtgtttttgttgttgccttttttga 169350
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>gb|AC025479.8| Homo sapiens chromosome 8, clone RP11-358J8, complete sequence
          Length = 176647

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 384   gtttttcctctatgaaaaatctgtgttc 411
             |||||| ||||||||||||| |||||||
Sbjct: 71053 gtttttactctatgaaaaatatgtgttc 71026
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>gb|AC022016.7| Homo sapiens chromosome 10 clone RP11-165M8, complete sequence
          Length = 163031

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 387    tttcctctatgaaaaatctg 406
              ||||||||||||||||||||
Sbjct: 148529 tttcctctatgaaaaatctg 148510
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>gb|AC063965.8| Homo sapiens chromosome 10 clone RP11-380G5, complete sequence
          Length = 201536

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 387    tttcctctatgaaaaatctg 406
              ||||||||||||||||||||
Sbjct: 118020 tttcctctatgaaaaatctg 118039
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>gb|AC091039.7| Homo sapiens chromosome 18, clone RP11-403A5, complete sequence
          Length = 168148

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 29/31 (93%), Gaps = 2/31 (6%)
 Strand = Plus / Plus

                                            
Query: 281   gtctatgtgtttttg--gttgccttttttga 309
             |||||||||||||||  ||||||||||||||
Sbjct: 29774 gtctatgtgtttttgttgttgccttttttga 29804
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>gb|AC107828.16| Mus musculus chromosome 18, clone RP23-213N4, complete sequence
          Length = 212092

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 370   aagccatgctctctgtttttcctc 393
             |||||||| |||||||||||||||
Sbjct: 30462 aagccatggtctctgtttttcctc 30439
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>gb|DQ073384.1| Homo sapiens phosphatase and tensin homolog (mutated in multiple
             advanced cancers 1) (PTEN) gene, complete cds
          Length = 106765

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 387   tttcctctatgaaaaatctg 406
             ||||||||||||||||||||
Sbjct: 69236 tttcctctatgaaaaatctg 69217
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>gb|AC154177.2| Mus musculus BAC clone RP23-465J20 from chromosome 17, complete sequence
          Length = 206481

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 216    ctgctgctgcgtgtgtgtga 235
              ||||||||||||||||||||
Sbjct: 102573 ctgctgctgcgtgtgtgtga 102554
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>dbj|BS000045.1| Pan troglodytes chromosome 22 clone:RP43-179P23, map 22, complete
            sequences
          Length = 179114

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 284  tatgtgtttttggttgcctt 303
            ||||||||||||||||||||
Sbjct: 7107 tatgtgtttttggttgcctt 7126
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>gb|AF240627.1|AF240627 Homo sapiens chromosome 21 map 21q21 clone B650K3, complete sequence
          Length = 170770

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 284    tatgtgtttttggttgcctt 303
              ||||||||||||||||||||
Sbjct: 107503 tatgtgtttttggttgcctt 107522
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>gb|AF067844.1|AF067844 Homo sapiens chromosome 10 clone PTEN, complete sequence
          Length = 218336

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 387   tttcctctatgaaaaatctg 406
             ||||||||||||||||||||
Sbjct: 88706 tttcctctatgaaaaatctg 88687
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>emb|CT485605.3| RP43-010N04, complete sequence
          Length = 162117

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 338   tatcctccttaagctgcaga 357
             ||||||||||||||||||||
Sbjct: 87092 tatcctccttaagctgcaga 87111
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>dbj|AP005366.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB565H3, complete
             sequence
          Length = 101002

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 384   gtttttcctctatgaaaaatctgtgttc 411
             |||||| ||||||||||||| |||||||
Sbjct: 22192 gtttttactctatgaaaaatatgtgttc 22219
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>gb|BC086272.1| Xenopus laevis hypothetical LOC495683, mRNA (cDNA clone MGC:81956
            IMAGE:7010046), complete cds
          Length = 3285

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 348  aagctgcagatcaagatgta 367
            ||||||||||||||||||||
Sbjct: 2898 aagctgcagatcaagatgta 2879
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>emb|CT485994.3| RP43-077B08, complete sequence
          Length = 140305

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 338    tatcctccttaagctgcaga 357
              ||||||||||||||||||||
Sbjct: 110415 tatcctccttaagctgcaga 110434


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,051,651
Number of Sequences: 3902068
Number of extensions: 5051651
Number of successful extensions: 95902
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 95713
Number of HSP's gapped (non-prelim): 190
length of query: 462
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 440
effective length of database: 17,147,199,772
effective search space: 7544767899680
effective search space used: 7544767899680
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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