| Clone Name | bags37j08 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_464774.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2589 Score = 331 bits (167), Expect = 2e-87 Identities = 295/337 (87%), Gaps = 3/337 (0%) Strand = Plus / Plus Query: 266 tcaggatttgaggctatgttctgtttcagttaggcatgaaatcctaaattgtcaaaaaag 325 ||||||||||| ||||| ||||||||| ||||||||||||||| ||||||||||||| | Sbjct: 702 tcaggatttgaagctatcttctgtttccgttaggcatgaaatcttaaattgtcaaaacaa 761 Query: 326 atggcttgaagaattagccggtcttggacaaaaccttaaggtggtaacaaatgctgcaga 385 ||| ||||||| |||| || |||||| ||| ||||||||||||||||||| ||||||| Sbjct: 762 gtggtctgaagaactagctggccttggaaaaagccttaaggtggtaacaaatactgcaga 821 Query: 386 aaaatatcatgcaactctcgcagaaaacagaaaattgttcaatgagatccaggaactaaa 445 ||| ||||||| | |||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 822 aaagtatcatggagctcttgcagaaaacagaaaattgttcaatgagatccaggaactaaa 881 Query: 446 aggaaacatcagagtttactgccggattagaccttttcaacctggggaggatgaggcctc 505 ||||||||||||||| || || ||||| |||||||||| ||||||||||||||| || Sbjct: 882 aggaaacatcagagtatattgtcggataagaccttttcgacctggggaggatgacaagtc 941 Query: 506 cagttcagttgaatatattggtgtcaatggtgaacttgttttattgaaccccacaaaaca 565 ||||||||||||||||||||| | |||||||||||| ||| ||| ||||| |||||||| Sbjct: 942 cagttcagttgaatatattggggacaatggtgaactagttctatcaaaccctacaaaaca 1001 Query: 566 ---gaaggaagggagcaagaatttcacgttcaacaaa 599 |||||||||| |||| |||||||| || |||||| Sbjct: 1002 agggaaggaagggggcaaaaatttcacatttaacaaa 1038 Score = 81.8 bits (41), Expect = 2e-12 Identities = 119/145 (82%) Strand = Plus / Plus Query: 37 agcttgaagcaacaaaaagattgcatgagacacatagtcagcaattagagaccagagctt 96 ||||||||| |||||| |||||||||||| |||| ||||||||||||||||| | ||| Sbjct: 473 agcttgaagaaacaaagagattgcatgaggcacacagtcagcaattagagactaaggctg 532 Query: 97 accaggtaaaggaggagtcggaacataggataaaagaaatagagctcatgttagaagttt 156 || |||| |||||| |||||| |||||| ||||| || |||| |||||||| | || Sbjct: 533 cacaagtaagtaaggagttggaacagaggatagaagaagtaaagcttatgttagacgatt 592 Query: 157 ctatcaagagaaaaagagaatttga 181 ||| |||||||| || |||| |||| Sbjct: 593 ctaccaagagaagaatagaacttga 617
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 139 bits (70), Expect = 1e-29 Identities = 85/90 (94%) Strand = Plus / Minus Query: 359 ccttaaggtggtaacaaatgctgcagaaaaatatcatgcaactctcgcagaaaacagaaa 418 ||||||||||||||||||| |||||||||| ||||||| | |||| |||||||||||||| Sbjct: 7281270 ccttaaggtggtaacaaatactgcagaaaagtatcatggagctcttgcagaaaacagaaa 7281211 Query: 419 attgttcaatgagatccaggaactaaaagg 448 |||||||||||||||||||||||||||||| Sbjct: 7281210 attgttcaatgagatccaggaactaaaagg 7281181 Score = 125 bits (63), Expect = 2e-25 Identities = 134/157 (85%), Gaps = 3/157 (1%) Strand = Plus / Minus Query: 446 aggaaacatcagagtttactgccggattagaccttttcaacctggggaggatgaggcctc 505 ||||||||||||||| || || ||||| |||||||||| ||||||||||||||| || Sbjct: 7281099 aggaaacatcagagtatattgtcggataagaccttttcgacctggggaggatgacaagtc 7281040 Query: 506 cagttcagttgaatatattggtgtcaatggtgaacttgttttattgaaccccacaaaaca 565 ||||||||||||||||||||| | |||||||||||| ||| ||| ||||| |||||||| Sbjct: 7281039 cagttcagttgaatatattggggacaatggtgaactagttctatcaaaccctacaaaaca 7280980 Query: 566 ---gaaggaagggagcaagaatttcacgttcaacaaa 599 |||||||||| |||| |||||||| || |||||| Sbjct: 7280979 agggaaggaagggggcaaaaatttcacatttaacaaa 7280943 Score = 91.7 bits (46), Expect = 2e-15 Identities = 187/234 (79%) Strand = Plus / Minus Query: 37 agcttgaagcaacaaaaagattgcatgagacacatagtcagcaattagagaccagagctt 96 ||||||||| |||||| |||||||||||| |||| ||||||||||||||||| | ||| Sbjct: 7281785 agcttgaagaaacaaagagattgcatgaggcacacagtcagcaattagagactaaggctg 7281726 Query: 97 accaggtaaaggaggagtcggaacataggataaaagaaatagagctcatgttagaagttt 156 || |||| |||||| |||||| |||||| ||||| || |||| |||||||| | || Sbjct: 7281725 cacaagtaagtaaggagttggaacagaggatagaagaagtaaagcttatgttagacgatt 7281666 Query: 157 ctatcaagagaaaaagagaatttgaagaagtgtctaaatctcgaatccagttctgggagc 216 ||| |||||||| || |||| |||| ||| | || || || ||||||| |||||| | Sbjct: 7281665 ctaccaagagaagaatagaacttgaggaattatccgaaactagaatccaattctggaaaa 7281606 Query: 217 agaaaggaatagtggtcaaccaatttttgggtttgcaagtacaaaatgttcagg 270 |||||| | | ||| || | |||||| | ||||||||||||| |||||||||| Sbjct: 7281605 agaaagaagtggtgatcgatcaatttgtaagtttgcaagtacagaatgttcagg 7281552 Score = 81.8 bits (41), Expect = 2e-12 Identities = 53/57 (92%) Strand = Plus / Minus Query: 266 tcaggatttgaggctatgttctgtttcagttaggcatgaaatcctaaattgtcaaaa 322 ||||||||||| ||||| ||||||||| ||||||||||||||| ||||||||||||| Sbjct: 7281463 tcaggatttgaagctatcttctgtttccgttaggcatgaaatcttaaattgtcaaaa 7281407
>dbj|AP005756.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0035N08 Length = 136267 Score = 139 bits (70), Expect = 1e-29 Identities = 85/90 (94%) Strand = Plus / Minus Query: 359 ccttaaggtggtaacaaatgctgcagaaaaatatcatgcaactctcgcagaaaacagaaa 418 ||||||||||||||||||| |||||||||| ||||||| | |||| |||||||||||||| Sbjct: 57078 ccttaaggtggtaacaaatactgcagaaaagtatcatggagctcttgcagaaaacagaaa 57019 Query: 419 attgttcaatgagatccaggaactaaaagg 448 |||||||||||||||||||||||||||||| Sbjct: 57018 attgttcaatgagatccaggaactaaaagg 56989 Score = 125 bits (63), Expect = 2e-25 Identities = 134/157 (85%), Gaps = 3/157 (1%) Strand = Plus / Minus Query: 446 aggaaacatcagagtttactgccggattagaccttttcaacctggggaggatgaggcctc 505 ||||||||||||||| || || ||||| |||||||||| ||||||||||||||| || Sbjct: 56907 aggaaacatcagagtatattgtcggataagaccttttcgacctggggaggatgacaagtc 56848 Query: 506 cagttcagttgaatatattggtgtcaatggtgaacttgttttattgaaccccacaaaaca 565 ||||||||||||||||||||| | |||||||||||| ||| ||| ||||| |||||||| Sbjct: 56847 cagttcagttgaatatattggggacaatggtgaactagttctatcaaaccctacaaaaca 56788 Query: 566 ---gaaggaagggagcaagaatttcacgttcaacaaa 599 |||||||||| |||| |||||||| || |||||| Sbjct: 56787 agggaaggaagggggcaaaaatttcacatttaacaaa 56751 Score = 91.7 bits (46), Expect = 2e-15 Identities = 187/234 (79%) Strand = Plus / Minus Query: 37 agcttgaagcaacaaaaagattgcatgagacacatagtcagcaattagagaccagagctt 96 ||||||||| |||||| |||||||||||| |||| ||||||||||||||||| | ||| Sbjct: 57593 agcttgaagaaacaaagagattgcatgaggcacacagtcagcaattagagactaaggctg 57534 Query: 97 accaggtaaaggaggagtcggaacataggataaaagaaatagagctcatgttagaagttt 156 || |||| |||||| |||||| |||||| ||||| || |||| |||||||| | || Sbjct: 57533 cacaagtaagtaaggagttggaacagaggatagaagaagtaaagcttatgttagacgatt 57474 Query: 157 ctatcaagagaaaaagagaatttgaagaagtgtctaaatctcgaatccagttctgggagc 216 ||| |||||||| || |||| |||| ||| | || || || ||||||| |||||| | Sbjct: 57473 ctaccaagagaagaatagaacttgaggaattatccgaaactagaatccaattctggaaaa 57414 Query: 217 agaaaggaatagtggtcaaccaatttttgggtttgcaagtacaaaatgttcagg 270 |||||| | | ||| || | |||||| | ||||||||||||| |||||||||| Sbjct: 57413 agaaagaagtggtgatcgatcaatttgtaagtttgcaagtacagaatgttcagg 57360 Score = 81.8 bits (41), Expect = 2e-12 Identities = 53/57 (92%) Strand = Plus / Minus Query: 266 tcaggatttgaggctatgttctgtttcagttaggcatgaaatcctaaattgtcaaaa 322 ||||||||||| ||||| ||||||||| ||||||||||||||| ||||||||||||| Sbjct: 57271 tcaggatttgaagctatcttctgtttccgttaggcatgaaatcttaaattgtcaaaa 57215
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 91.7 bits (46), Expect = 2e-15 Identities = 85/98 (86%) Strand = Plus / Plus Query: 351 ggacaaaaccttaaggtggtaacaaatgctgcagaaaaatatcatgcaactctcgcagaa 410 ||||||| ||||||||| | ||||||||||| ||||| |||||||| ||||| | |||| Sbjct: 20760092 ggacaaagccttaaggtattgacaaatgctgctgaaaattatcatgctactcttgaagaa 20760151 Query: 411 aacagaaaattgttcaatgagatccaggaactaaaagg 448 ||||||||||| ||||||||| | ||||| |||||||| Sbjct: 20760152 aacagaaaattattcaatgaggttcaggagctaaaagg 20760189 Score = 48.1 bits (24), Expect = 0.033 Identities = 60/72 (83%) Strand = Plus / Plus Query: 267 caggatttgaggctatgttctgtttcagttaggcatgaaatcctaaattgtcaaaaaaga 326 |||||||||||| | | ||||||||| | ||||||||||||||| | || || |||||| Sbjct: 20759914 caggatttgaggttgtcttctgtttccatcaggcatgaaatcctacactgccagaaaaga 20759973 Query: 327 tggcttgaagaa 338 ||| ||||||| Sbjct: 20759974 tggtctgaagaa 20759985 Score = 40.1 bits (20), Expect = 8.2 Identities = 77/96 (80%) Strand = Plus / Plus Query: 446 aggaaacatcagagtttactgccggattagaccttttcaacctggggaggatgaggcctc 505 |||||| |||||||| | |||||||| || ||||||| ||||| |||||| || | || Sbjct: 20760268 aggaaatatcagagtccattgccggataaggccttttcttcctggagaggatcagacatc 20760327 Query: 506 cagttcagttgaatatattggtgtcaatggtgaact 541 | | || |||||||| |||||| ||||||||||| Sbjct: 20760328 tactacaattgaatatgttggtgataatggtgaact 20760363
>dbj|AP003613.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0458E11 Length = 148798 Score = 91.7 bits (46), Expect = 2e-15 Identities = 85/98 (86%) Strand = Plus / Plus Query: 351 ggacaaaaccttaaggtggtaacaaatgctgcagaaaaatatcatgcaactctcgcagaa 410 ||||||| ||||||||| | ||||||||||| ||||| |||||||| ||||| | |||| Sbjct: 14767 ggacaaagccttaaggtattgacaaatgctgctgaaaattatcatgctactcttgaagaa 14826 Query: 411 aacagaaaattgttcaatgagatccaggaactaaaagg 448 ||||||||||| ||||||||| | ||||| |||||||| Sbjct: 14827 aacagaaaattattcaatgaggttcaggagctaaaagg 14864 Score = 48.1 bits (24), Expect = 0.033 Identities = 60/72 (83%) Strand = Plus / Plus Query: 267 caggatttgaggctatgttctgtttcagttaggcatgaaatcctaaattgtcaaaaaaga 326 |||||||||||| | | ||||||||| | ||||||||||||||| | || || |||||| Sbjct: 14589 caggatttgaggttgtcttctgtttccatcaggcatgaaatcctacactgccagaaaaga 14648 Query: 327 tggcttgaagaa 338 ||| ||||||| Sbjct: 14649 tggtctgaagaa 14660 Score = 40.1 bits (20), Expect = 8.2 Identities = 77/96 (80%) Strand = Plus / Plus Query: 446 aggaaacatcagagtttactgccggattagaccttttcaacctggggaggatgaggcctc 505 |||||| |||||||| | |||||||| || ||||||| ||||| |||||| || | || Sbjct: 14943 aggaaatatcagagtccattgccggataaggccttttcttcctggagaggatcagacatc 15002 Query: 506 cagttcagttgaatatattggtgtcaatggtgaact 541 | | || |||||||| |||||| ||||||||||| Sbjct: 15003 tactacaattgaatatgttggtgataatggtgaact 15038
>dbj|AP002961.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-2I22, complete sequence Length = 157903 Score = 50.1 bits (25), Expect = 0.008 Identities = 25/25 (100%) Strand = Plus / Minus Query: 163 agagaaaaagagaatttgaagaagt 187 ||||||||||||||||||||||||| Sbjct: 9234 agagaaaaagagaatttgaagaagt 9210
>ref|NM_105041.2| Arabidopsis thaliana ATP binding / microtubule motor AT1G63640 transcript variant AT1G63640.1 mRNA, complete cds Length = 3582 Score = 48.1 bits (24), Expect = 0.033 Identities = 36/40 (90%) Strand = Plus / Plus Query: 444 aaaggaaacatcagagtttactgccggattagaccttttc 483 |||||||| |||||||| || |||||||||||||| |||| Sbjct: 1628 aaaggaaatatcagagtctattgccggattagaccatttc 1667
>ref|NM_202350.1| Arabidopsis thaliana ATP binding / microtubule motor AT1G63640 transcript variant AT1G63640.2 mRNA, complete cds Length = 3585 Score = 48.1 bits (24), Expect = 0.033 Identities = 36/40 (90%) Strand = Plus / Plus Query: 444 aaaggaaacatcagagtttactgccggattagaccttttc 483 |||||||| |||||||| || |||||||||||||| |||| Sbjct: 1628 aaaggaaatatcagagtctattgccggattagaccatttc 1667
>gb|DQ160083.1| Taraxacum officinale TO58-1 (To58-1) mRNA, partial cds Length = 242 Score = 48.1 bits (24), Expect = 0.033 Identities = 33/36 (91%) Strand = Plus / Plus Query: 444 aaaggaaacatcagagtttactgccggattagacct 479 ||||||||||| |||||||||||| | ||||||||| Sbjct: 150 aaaggaaacattagagtttactgcagaattagacct 185
>emb|BX816904.1|CNS0AE0X Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH75ZE06 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 3676 Score = 48.1 bits (24), Expect = 0.033 Identities = 36/40 (90%) Strand = Plus / Plus Query: 444 aaaggaaacatcagagtttactgccggattagaccttttc 483 |||||||| |||||||| || |||||||||||||| |||| Sbjct: 1673 aaaggaaatatcagagtctattgccggattagaccatttc 1712
>ref|NM_106046.3| Arabidopsis thaliana ATP binding / microtubule motor AT1G73860 mRNA, complete cds Length = 3475 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Plus Query: 435 caggaactaaaaggaaacatcagagt 460 ||||| |||||||||||||||||||| Sbjct: 1690 caggagctaaaaggaaacatcagagt 1715
>gb|AC011622.6|AC011622 Arabidopsis thaliana chromosome 1 BAC F24D7 genomic sequence, complete sequence Length = 87575 Score = 44.1 bits (22), Expect = 0.52 Identities = 34/38 (89%) Strand = Plus / Plus Query: 446 aggaaacatcagagtttactgccggattagaccttttc 483 |||||| |||||||| || |||||||||||||| |||| Sbjct: 76804 aggaaatatcagagtctattgccggattagaccatttc 76841
>gb|AC008047.3|AC008047 Genomic sequence for Arabidopsis thaliana BAC F2K11 from chromosome I, complete sequence Length = 100867 Score = 44.1 bits (22), Expect = 0.52 Identities = 34/38 (89%) Strand = Plus / Plus Query: 446 aggaaacatcagagtttactgccggattagaccttttc 483 |||||| |||||||| || |||||||||||||| |||| Sbjct: 4857 aggaaatatcagagtctattgccggattagaccatttc 4894
>ref|XM_642043.1| Dictyostelium discoideum kinesin-related protein K2 (DDB0191126), partial mRNA Length = 2379 Score = 42.1 bits (21), Expect = 2.1 Identities = 36/41 (87%) Strand = Plus / Plus Query: 438 gaactaaaaggaaacatcagagtttactgccggattagacc 478 ||||| ||||||||||| ||||||| ||| |||||||||| Sbjct: 1297 gaacttaaaggaaacattagagttttctgtaggattagacc 1337
>gb|AC157576.4| Mus musculus chromosome 18, clone RP24-252J16, complete sequence Length = 164440 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 563 acagaaggaagggagcaagaatttc 587 ||||||||||||| ||||||||||| Sbjct: 75944 acagaaggaagggcgcaagaatttc 75968
>dbj|AK142048.1| Mus musculus 12 days embryo eyeball cDNA, RIKEN full-length enriched library, clone:D230012N06 product:unclassifiable, full insert sequence Length = 5215 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 563 acagaaggaagggagcaagaatttc 587 ||||||||||||| ||||||||||| Sbjct: 3746 acagaaggaagggcgcaagaatttc 3722
>gb|AC161756.3| Mus musculus BAC clone RP24-106J5 from chromosome 16, complete sequence Length = 219500 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 180 gaagaagtgtctaaatctcga 200 ||||||||||||||||||||| Sbjct: 205506 gaagaagtgtctaaatctcga 205526
>emb|BX571983.11| Zebrafish DNA sequence from clone DKEY-18M7 in linkage group 11, complete sequence Length = 248929 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 403 tcgcagaaaacagaaaattgt 423 ||||||||||||||||||||| Sbjct: 156818 tcgcagaaaacagaaaattgt 156798
>dbj|AK089408.1| Mus musculus B6-derived CD11 +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F730023N20 product:hypothetical Cytochrome P450 structure containing protein, full insert sequence Length = 2738 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 180 gaagaagtgtctaaatctcga 200 ||||||||||||||||||||| Sbjct: 1835 gaagaagtgtctaaatctcga 1855
>gb|AC073052.5| Homo sapiens BAC clone RP11-92F20 from 2, complete sequence Length = 127070 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 561 aaacagaaggaagggagcaag 581 ||||||||||||||||||||| Sbjct: 17257 aaacagaaggaagggagcaag 17237
>ref|NM_183158.1| Mus musculus hypothetical protein F730023N20 (F730023N20), mRNA Length = 2738 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 180 gaagaagtgtctaaatctcga 200 ||||||||||||||||||||| Sbjct: 1835 gaagaagtgtctaaatctcga 1855
>gb|AC154526.2| Mus musculus BAC clone RP24-69I14 from 16, complete sequence Length = 219420 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 180 gaagaagtgtctaaatctcga 200 ||||||||||||||||||||| Sbjct: 84592 gaagaagtgtctaaatctcga 84612
>dbj|AB037280.1| Dictyostelium discoideum DdK2 gene for Dd kinesin-related protein K2, complete cds Length = 2475 Score = 42.1 bits (21), Expect = 2.1 Identities = 36/41 (87%) Strand = Plus / Plus Query: 438 gaactaaaaggaaacatcagagtttactgccggattagacc 478 ||||| ||||||||||| ||||||| ||| |||||||||| Sbjct: 1393 gaacttaaaggaaacattagagttttctgtaggattagacc 1433
>gb|AF015712.1|AF015712 Dictyostelium discoideum kinesin-related protein K2 mRNA, partial cds Length = 2163 Score = 42.1 bits (21), Expect = 2.1 Identities = 36/41 (87%) Strand = Plus / Plus Query: 438 gaactaaaaggaaacatcagagtttactgccggattagacc 478 ||||| ||||||||||| ||||||| ||| |||||||||| Sbjct: 1065 gaacttaaaggaaacattagagttttctgtaggattagacc 1105
>gb|AC073597.20| Homo sapiens Xp BAC RP11-793P1 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 120000 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 162 aagagaaaaagagaatttgaa 182 ||||||||||||||||||||| Sbjct: 55379 aagagaaaaagagaatttgaa 55399
>gb|AY958085.1| Staurastrum punctulatum chloroplast, complete genome Length = 157089 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 318 caaaaaagatggcttgaagaatta 341 |||||||||||||||||| ||||| Sbjct: 137738 caaaaaagatggcttgaacaatta 137761
>ref|XM_604734.2| PREDICTED: Bos taurus similar to cytosolic phospholipase A2 epsilon (LOC526364), partial mRNA Length = 2832 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 tctgggagcagaaaggaata 227 |||||||||||||||||||| Sbjct: 799 tctgggagcagaaaggaata 818
>gb|AC164091.3| Mus musculus BAC clone RP23-97M20 from chromosome 3, complete sequence Length = 218807 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 211 gggagcagaaaggaatagtg 230 |||||||||||||||||||| Sbjct: 137215 gggagcagaaaggaatagtg 137196
>gb|AC147136.2| Pan troglodytes BAC clone CH251-334C1 from Y, complete sequence Length = 161852 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 440 actaaaaggaaacatcagag 459 |||||||||||||||||||| Sbjct: 79185 actaaaaggaaacatcagag 79166
>gb|AC124552.3| Mus musculus BAC clone RP23-222M11 from chromosome 19, complete sequence Length = 237281 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 565 agaaggaagggagcaagaat 584 |||||||||||||||||||| Sbjct: 62367 agaaggaagggagcaagaat 62348
>gb|AC131746.3| Mus musculus BAC clone RP23-62F20 from 3, complete sequence Length = 201620 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 211 gggagcagaaaggaatagtg 230 |||||||||||||||||||| Sbjct: 171324 gggagcagaaaggaatagtg 171343
>gb|AC123063.4| Mus musculus BAC clone RP23-219I20 from 5, complete sequence Length = 204795 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 506 cagttcagttgaatatattg 525 |||||||||||||||||||| Sbjct: 61112 cagttcagttgaatatattg 61093
>gb|AC153643.22| Medicago truncatula clone mth2-109d3, complete sequence Length = 114250 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 434 ccaggaactaaaaggaaaca 453 |||||||||||||||||||| Sbjct: 80485 ccaggaactaaaaggaaaca 80504
>emb|AL359710.15| Human DNA sequence from clone RP11-30L7 on chromosome 9 Contains part of a novel gene, the 5' end of the NR4A3 gene for nuclear receptor subfamily 4 group A, member 3 and two CpG islands, complete sequence Length = 174140 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 412 acagaaaattgttcaatgag 431 |||||||||||||||||||| Sbjct: 69997 acagaaaattgttcaatgag 69978
>emb|AL161945.31| Human DNA sequence from clone RP4-606D23 on chromosome 20 Contains ESTs, STSs and GSSs, complete sequence Length = 70299 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 531 aatggtgaacttgttttatt 550 |||||||||||||||||||| Sbjct: 49648 aatggtgaacttgttttatt 49667
>emb|AL160275.14| Human DNA sequence from clone RP11-402G3 on chromosome 9 Contains the ATP6V1G1 gene for ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G isoform 1 (ATP6G, ATP6GL), a novel gene (DKFZp547P234), a novel gene, a pseudogene similar to part of ribosomal protein L7 (RPL7), a pseudogene similar to part of ARP3 actin-related protein 3 homolog (yeast) (ACTR3) and three CpG islands, complete sequence Length = 189709 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 163 agagaaaaagagaatttgaa 182 |||||||||||||||||||| Sbjct: 155430 agagaaaaagagaatttgaa 155411
>emb|AL157380.15| Human DNA sequence from clone RP11-358K18 on chromosome Xq21.32-22.1, complete sequence Length = 132992 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 aacataggataaaagaaata 137 |||||||||||||||||||| Sbjct: 100706 aacataggataaaagaaata 100687
>gb|AC129292.4| Mus musculus chromosome 5 clone RP24-507A8, complete sequence Length = 186200 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 506 cagttcagttgaatatattg 525 |||||||||||||||||||| Sbjct: 136005 cagttcagttgaatatattg 135986
>emb|AL049796.28|HSJ561L24 Human DNA sequence from clone RP4-561L24 on chromosome 1p22-31.1 Contains the 5' end of a novel gene, the 5' end of a variant of the BCAR3 gene for breast cancer anti-estrogen resistance 3, the gene for acidic 82 kDa protein mRNA (HSU15552), the 3' end of the GCLM gene for glutamate-cysteine ligase modifier subunit and a CpG island, complete sequence Length = 125823 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 304 aaatcctaaattgtcaaaaaagat 327 |||||| ||||||||||||||||| Sbjct: 41340 aaatccaaaattgtcaaaaaagat 41317
>gb|AC108451.9| Homo sapiens chromosome 15, clone RP11-379K22, complete sequence Length = 198707 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 440 actaaaaggaaacatcagag 459 |||||||||||||||||||| Sbjct: 98380 actaaaaggaaacatcagag 98399
>gb|BC041977.1| Homo sapiens cDNA clone IMAGE:5303042 Length = 1786 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 304 aaatcctaaattgtcaaaaaagat 327 |||||| ||||||||||||||||| Sbjct: 1258 aaatccaaaattgtcaaaaaagat 1281
>gb|AC091913.2| Homo sapiens chromosome 5 clone RP11-216D7, complete sequence Length = 90840 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 aaaaagagaatttgaagaag 186 |||||||||||||||||||| Sbjct: 89481 aaaaagagaatttgaagaag 89462
>gb|AC091708.2| Gallus gallus clone XXbac-68C5, complete sequence Length = 124309 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 161 caagagaaaaagagaatttg 180 |||||||||||||||||||| Sbjct: 115638 caagagaaaaagagaatttg 115657
>gb|AC084760.2| Gallus gallus clone WAG-65N20, complete sequence Length = 109569 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 161 caagagaaaaagagaatttg 180 |||||||||||||||||||| Sbjct: 32268 caagagaaaaagagaatttg 32287
>dbj|BS000634.2| Pan troglodytes chromosome Y clone: PTB-592K24, complete sequence Length = 170276 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 440 actaaaaggaaacatcagag 459 |||||||||||||||||||| Sbjct: 4498 actaaaaggaaacatcagag 4479
>dbj|BS000575.1| Pan troglodytes chromosome Y clone:PTB-031L12, complete sequences Length = 158061 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 440 actaaaaggaaacatcagag 459 |||||||||||||||||||| Sbjct: 59816 actaaaaggaaacatcagag 59835
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence Length = 23952694 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 440 actaaaaggaaacatcagag 459 |||||||||||||||||||| Sbjct: 17492503 actaaaaggaaacatcagag 17492522
>gb|AC015923.8| Homo sapiens chromosome 17, clone CTD-2301B9, complete sequence Length = 109774 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 407 agaaaacagaaaattgttca 426 |||||||||||||||||||| Sbjct: 103210 agaaaacagaaaattgttca 103229
>gb|AC109486.2| Homo sapiens chromosome 5 clone RP11-546M4, complete sequence Length = 202405 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 167 aaaaagagaatttgaagaag 186 |||||||||||||||||||| Sbjct: 183646 aaaaagagaatttgaagaag 183665
>gb|AC103870.3| Homo sapiens chromosome 11, clone RP11-702L21, complete sequence Length = 182598 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 355 aaaaccttaaggtggtaaca 374 |||||||||||||||||||| Sbjct: 3410 aaaaccttaaggtggtaaca 3429
>gb|AC103873.2| Homo sapiens chromosome 11, clone RP11-768H8, complete sequence Length = 184860 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 355 aaaaccttaaggtggtaaca 374 |||||||||||||||||||| Sbjct: 36236 aaaaccttaaggtggtaaca 36217
>gb|AC099775.2| Homo sapiens chromosome 3 clone RP11-169G24, complete sequence Length = 181443 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 aagagaaaaagagaatttga 181 |||||||||||||||||||| Sbjct: 36163 aagagaaaaagagaatttga 36182
>gb|AC073840.8| Homo sapiens BAC clone RP11-429O22 from 4, complete sequence Length = 187640 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 440 actaaaaggaaacatcagag 459 |||||||||||||||||||| Sbjct: 139037 actaaaaggaaacatcagag 139018
>gb|AC010602.7| Homo sapiens chromosome 5 clone CTB-122H10, complete sequence Length = 145424 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 aagagaaaaagagaatttga 181 |||||||||||||||||||| Sbjct: 35221 aagagaaaaagagaatttga 35240
>gb|AC163701.4| Gallus gallus BAC clone CH261-117C7 from chromosome unknown, complete sequence Length = 239874 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 caagagaaaaagagaatttg 180 |||||||||||||||||||| Sbjct: 104638 caagagaaaaagagaatttg 104619
>gb|AC021872.22| Homo sapiens 12 BAC RP11-253F9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 164020 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 407 agaaaacagaaaattgttca 426 |||||||||||||||||||| Sbjct: 15931 agaaaacagaaaattgttca 15912
>emb|CR524822.2| Mouse DNA sequence from clone WI1-1536G2 on chromosome X, complete sequence Length = 40056 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 510 tcagttgaatatattggtgt 529 |||||||||||||||||||| Sbjct: 29953 tcagttgaatatattggtgt 29934
>gb|AC149490.2| Medicago truncatula chromosome 2 BAC clone mth2-29n15, complete sequence Length = 53286 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 479 ttttcaacctggggaggatg 498 |||||||||||||||||||| Sbjct: 26717 ttttcaacctggggaggatg 26736
>gb|AC091911.3| Homo sapiens chromosome 5 clone RP11-211K15, complete sequence Length = 167553 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 440 actaaaaggaaacatcagag 459 |||||||||||||||||||| Sbjct: 54936 actaaaaggaaacatcagag 54917
>gb|AC079226.7| Homo sapiens BAC clone RP11-18D7 from 4, complete sequence Length = 184032 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 297 aggcatgaaatcctaaattg 316 |||||||||||||||||||| Sbjct: 67223 aggcatgaaatcctaaattg 67242
>gb|AC069154.5| Homo sapiens BAC clone RP11-689F8 from 2, complete sequence Length = 167132 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 475 gaccttttcaacctggggag 494 |||||||||||||||||||| Sbjct: 63733 gaccttttcaacctggggag 63714
>dbj|AB181833.1| Verasper moseri VgA mRNA for vitellogenin, complete cds Length = 4966 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 187 tgtctaaatctcgaatccagttctggga 214 |||| |||||| |||||||||||||||| Sbjct: 1827 tgtcaaaatcttgaatccagttctggga 1854
>gb|AC007365.3| Homo sapiens BAC clone RP11-451M22 from 2, complete sequence Length = 184285 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 505 ccagttcagttgaatatatt 524 |||||||||||||||||||| Sbjct: 33484 ccagttcagttgaatatatt 33503
>gb|AC067721.22| Homo sapiens 3 BAC RP11-111F10 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 172953 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 256 tacaaaatgttcaggatttg 275 |||||||||||||||||||| Sbjct: 73531 tacaaaatgttcaggatttg 73550
>gb|AC005295.1| Homo sapiens X bins 3-5 PAC RPCI4-617A9 (Roswell Park Cancer Institute Human PAC Library) complete sequence Length = 131070 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 440 actaaaaggaaacatcagag 459 |||||||||||||||||||| Sbjct: 21729 actaaaaggaaacatcagag 21710
>gb|AC002992.1|AC002992 Homo sapiens chromosome Y, clone 203M13, complete sequence Length = 154848 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 440 actaaaaggaaacatcagag 459 |||||||||||||||||||| Sbjct: 79555 actaaaaggaaacatcagag 79574
>gb|AC006270.1|AC006270 Homo sapiens chromosome 17, clone hRPK.556_O_9, complete sequence Length = 179929 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 407 agaaaacagaaaattgttca 426 |||||||||||||||||||| Sbjct: 15714 agaaaacagaaaattgttca 15733
>dbj|AP000721.5| Homo sapiens genomic DNA, chromosome 11 clone:CMB9-91L24, complete sequence Length = 124636 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 489 ggggaggatgaggcctccag 508 |||||||||||||||||||| Sbjct: 80643 ggggaggatgaggcctccag 80662
>emb|CR550307.8| Zebrafish DNA sequence from clone DKEY-174E10 in linkage group 11, complete sequence Length = 178645 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 404 cgcagaaaacagaaaattgt 423 |||||||||||||||||||| Sbjct: 78458 cgcagaaaacagaaaattgt 78477
>gb|AC123625.22| Mus musculus chromosome 3, clone RP23-227N19, complete sequence Length = 229546 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 510 tcagttgaatatattggtgt 529 |||||||||||||||||||| Sbjct: 148736 tcagttgaatatattggtgt 148717 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 510 tcagttgaatatattggtgt 529 |||||||||||||||||||| Sbjct: 72516 tcagttgaatatattggtgt 72497
>gb|AC140939.1| Gallus gallus BAC clone TAM32-30G17 from chromosome ul, complete sequence Length = 86189 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 506 cagttcagttgaatatattg 525 |||||||||||||||||||| Sbjct: 85922 cagttcagttgaatatattg 85941
>gb|AC002114.1|HSAC002114 Human Cosmid g1940a085 from 7q31.3, complete sequence Length = 45852 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 360 cttaaggtggtaacaaatgc 379 |||||||||||||||||||| Sbjct: 510 cttaaggtggtaacaaatgc 491
>gb|AC002084.1|HSAC002084 Human Cosmid g1940a370 from 7q31.3, complete sequence Length = 36007 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 360 cttaaggtggtaacaaatgc 379 |||||||||||||||||||| Sbjct: 31976 cttaaggtggtaacaaatgc 31957
>dbj|AB231865.1| Spisula solidissima gene for zinc finger protein Sso-Zic, complete cds Length = 209833 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 512 agttgaatatattggtgtca 531 |||||||||||||||||||| Sbjct: 6037 agttgaatatattggtgtca 6056
>emb|AL606915.12| Mouse DNA sequence from clone RP23-185C16 on chromosome 4, complete sequence Length = 182248 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 402 ctcgcagaaaacagaaaatt 421 |||||||||||||||||||| Sbjct: 64504 ctcgcagaaaacagaaaatt 64523
>emb|AL669975.9| Mouse DNA sequence from clone RP23-218H24 on chromosome X, complete sequence Length = 230634 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 aggataaaagaaatagagct 142 |||||||||||||||||||| Sbjct: 109792 aggataaaagaaatagagct 109811 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7,362,437 Number of Sequences: 3902068 Number of extensions: 7362437 Number of successful extensions: 154522 Number of sequences better than 10.0: 76 Number of HSP's better than 10.0 without gapping: 76 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 154168 Number of HSP's gapped (non-prelim): 351 length of query: 599 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 576 effective length of database: 17,143,297,704 effective search space: 9874539477504 effective search space used: 9874539477504 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)