| Clone Name | bags37i05 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_190541.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1734 Score = 539 bits (272), Expect = e-150 Identities = 488/561 (86%), Gaps = 1/561 (0%) Strand = Plus / Plus Query: 15 cactttgtccaacgtttgaaaaatgatgttcgagtggttgacaaggtgcctggattcata 74 ||||| |||||||| |||||||||||||| ||||| |||||||||||||||| || || Sbjct: 670 cacttcgtccaacgattgaaaaatgatgtccgagtagttgacaaggtgcctgagtttatt 729 Query: 75 atggagcggtttagtaacaacttgagtaatgtttataatttcaagataaaggcttggtct 134 |||||| ||||| || |||| ||||||||||| | ||||||||||||||||||||||||| Sbjct: 730 atggagaggtttggtcacaatttgagtaatgtgtttaatttcaagataaaggcttggtct 789 Query: 135 cctattcagtactacaaagatgttgttcttccgaagttgattgaagaaagggtcataagg 194 |||| | ||||||||||| | ||||||||| |||||||| ||||||||| | |||||| Sbjct: 790 tctatccgatactacaaagaagctgttcttcctaagttgatcgaagaaaggcttataagg 849 Query: 195 atatcaccttttgcaaatcggctttcagttgatgctccgcctgctgttcagcgactgaga 254 ||||||||||||||||| || || || |||||||||| | |||||||| || ||||| Sbjct: 850 atatcaccttttgcaaaccgactgtcctttgatgctccatcagctgttcaacggttgaga 909 Query: 255 tgtctggctaactttgaagccttaaagttttctaaaccaatcactgctttatctgacact 314 ||||||||||| ||||||||||||||||||||||| || ||||| |||||||||||| | Sbjct: 910 tgtctggctaattttgaagccttaaagttttctaagccgatcacaactttatctgacatt 969 Query: 315 ttaatttctcgaatgagagaaaaaagtgtggaaaacaacgggaaatatgtagctgtgcat 374 ||| | |||||||||||||||||||||| |||||||| |||||||||||||| |||||| Sbjct: 970 ttagtatctcgaatgagagaaaaaagtgccgaaaacaatgggaaatatgtagcggtgcat 1029 Query: 375 ctccgttttgaagaggatatggttgcgttctcttgctgtgtctttgacggtggtgatgag 434 |||||||||||||||||||||||||| |||||||| |||||||| ||||| ||||| || Sbjct: 1030 ctccgttttgaagaggatatggttgcattctcttgttgtgtcttcgacgggggtgaaaag 1089 Query: 435 gnnnnnnnggaattggatgaggccagggaaagaggctggcgtggaaaatttactaggcct 494 | |||| |||||| |||||||| || || ||| | ||||| ||||||||||| Sbjct: 1090 gagaagaaggaactggatgcagccagggagaggggttggagaggaaagtttactaggcca 1149 Query: 495 ggacgtgtaataaggcctggagcaataaggatgaatggtaaaatgtccacttacaccttt 554 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 1150 ggacgtgtaataaggcctggagcaataaggatgaatgg-gaaatgtccacttacaccttt 1208 Query: 555 ggaggttggattaatgcttcg 575 ||||||||| ||||||||||| Sbjct: 1209 ggaggttgggttaatgcttcg 1229
>dbj|AK060210.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-002-B05, full insert sequence Length = 1678 Score = 539 bits (272), Expect = e-150 Identities = 488/561 (86%), Gaps = 1/561 (0%) Strand = Plus / Plus Query: 15 cactttgtccaacgtttgaaaaatgatgttcgagtggttgacaaggtgcctggattcata 74 ||||| |||||||| |||||||||||||| ||||| |||||||||||||||| || || Sbjct: 83 cacttcgtccaacgattgaaaaatgatgtccgagtagttgacaaggtgcctgagtttatt 142 Query: 75 atggagcggtttagtaacaacttgagtaatgtttataatttcaagataaaggcttggtct 134 |||||| ||||| || |||| ||||||||||| | ||||||||||||||||||||||||| Sbjct: 143 atggagaggtttggtcacaatttgagtaatgtgtttaatttcaagataaaggcttggtct 202 Query: 135 cctattcagtactacaaagatgttgttcttccgaagttgattgaagaaagggtcataagg 194 |||| | ||||||||||| | ||||||||| |||||||| ||||||||| | |||||| Sbjct: 203 tctatccgatactacaaagaagctgttcttcctaagttgatcgaagaaaggcttataagg 262 Query: 195 atatcaccttttgcaaatcggctttcagttgatgctccgcctgctgttcagcgactgaga 254 ||||||||||||||||| || || || |||||||||| | |||||||| || ||||| Sbjct: 263 atatcaccttttgcaaaccgactgtcctttgatgctccatcagctgttcaacggttgaga 322 Query: 255 tgtctggctaactttgaagccttaaagttttctaaaccaatcactgctttatctgacact 314 ||||||||||| ||||||||||||||||||||||| || ||||| |||||||||||| | Sbjct: 323 tgtctggctaattttgaagccttaaagttttctaagccgatcacaactttatctgacatt 382 Query: 315 ttaatttctcgaatgagagaaaaaagtgtggaaaacaacgggaaatatgtagctgtgcat 374 ||| | |||||||||||||||||||||| |||||||| |||||||||||||| |||||| Sbjct: 383 ttagtatctcgaatgagagaaaaaagtgccgaaaacaatgggaaatatgtagcggtgcat 442 Query: 375 ctccgttttgaagaggatatggttgcgttctcttgctgtgtctttgacggtggtgatgag 434 |||||||||||||||||||||||||| |||||||| |||||||| ||||| ||||| || Sbjct: 443 ctccgttttgaagaggatatggttgcattctcttgttgtgtcttcgacgggggtgaaaag 502 Query: 435 gnnnnnnnggaattggatgaggccagggaaagaggctggcgtggaaaatttactaggcct 494 | |||| |||||| |||||||| || || ||| | ||||| ||||||||||| Sbjct: 503 gagaagaaggaactggatgcagccagggagaggggttggagaggaaagtttactaggcca 562 Query: 495 ggacgtgtaataaggcctggagcaataaggatgaatggtaaaatgtccacttacaccttt 554 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 563 ggacgtgtaataaggcctggagcaataaggatgaatgg-gaaatgtccacttacaccttt 621 Query: 555 ggaggttggattaatgcttcg 575 ||||||||| ||||||||||| Sbjct: 622 ggaggttgggttaatgcttcg 642
>ref|XM_475363.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1560 Score = 283 bits (143), Expect = 3e-73 Identities = 446/548 (81%), Gaps = 1/548 (0%) Strand = Plus / Plus Query: 34 aaaatgatgttcgagtggttgacaaggtgcctggattcataatggagcggtttagtaaca 93 |||||||||| ||||| ||||| |||||||||| || ||||||||||| ||| | ||| Sbjct: 560 aaaatgatgtacgagtagttgaaaaggtgcctgattttataatggagcgatttggccaca 619 Query: 94 acttgagtaatgtttataatttcaagataaaggcttggtctcctattcagtactacaaag 153 | | || ||||| | ||||||||||||||||||||||| |||||||| |||||||||| Sbjct: 620 atcttagcaatgtattcaatttcaagataaaggcttggtcccctattcaatactacaaag 679 Query: 154 atgttgttcttccgaagttgattgaagaaagggtcataaggatatcaccttttgcaaatc 213 ||| ||||||||| ||||||||||| |||||| |||| ||||| ||||| ||||| || | Sbjct: 680 atgctgttcttcctaagttgattgaggaaaggctcatcaggatttcaccctttgcgaacc 739 Query: 214 ggctttcagttgatgctccgcctgctgttcagcgactgagatgtctggctaactttgaag 273 |||| ||| ||||||| || || | |||||| || ||||||| ||||||| ||||||| Sbjct: 740 ggctgtcatttgatgcccctccagttgttcaacggttgagatgcttggctaattttgaag 799 Query: 274 ccttaaagttttctaaaccaatcactgctttatctgacactttaatttctcgaatgagag 333 | ||||| ||||| || ||||| | || ||||||| || ||| | |||||||||| || Sbjct: 800 ctttaaaattttccaacccaattgcgactctatctgagaccttagtctctcgaatgaaag 859 Query: 334 aaaaaagtgtggaaaacaacgggaaatatgtagctgtgcatctccgttttgaagaggata 393 ||||||| || | ||| |||||||| | || |||||||| |||||||| ||||||| Sbjct: 860 aaaaaagcacggcgagcaatgggaaatacatcgcggtgcatcttcgttttgaggaggata 919 Query: 394 tggttgcgttctcttgctgtgtctttgacggtggtgatgaggnnnnnnnggaattggatg 453 ||||||| ||||| || ||||||| ||| ||||||||||||| |||| || ||| Sbjct: 920 tggttgccttctcatgttgtgtctatgatggtggtgatgaggagaagaaggaaatgaatg 979 Query: 454 aggccagggaaagaggctggcgtggaaaatttactaggcctggacgtgtaataaggcctg 513 ||||| |||| ||| ||| | || || || |||| || ||||||||||||||||| | Sbjct: 980 cagccagagaaataggttggagagggaagttcactaagcgaggacgtgtaataaggccag 1039 Query: 514 gagcaataaggatgaatggtaaaatgtccacttacacctttggaggttggattaatgctt 573 ||| ||||| ||||| || |||||||||||| ||||||||||||||||| ||||||||| Sbjct: 1040 gagtgataagaatgaacgg-aaaatgtccactcacacctttggaggttgggttaatgctt 1098 Query: 574 cgtggaat 581 |||||||| Sbjct: 1099 cgtggaat 1106
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 218 bits (110), Expect = 2e-53 Identities = 179/202 (88%) Strand = Plus / Minus Query: 189 ataaggatatcaccttttgcaaatcggctttcagttgatgctccgcctgctgttcagcga 248 ||||||||||||||||||||||| || || || |||||||||| | |||||||| || Sbjct: 36100546 ataaggatatcaccttttgcaaaccgactgtcctttgatgctccatcagctgttcaacgg 36100487 Query: 249 ctgagatgtctggctaactttgaagccttaaagttttctaaaccaatcactgctttatct 308 |||||||||||||||| ||||||||||||||||||||||| || ||||| |||||||| Sbjct: 36100486 ttgagatgtctggctaattttgaagccttaaagttttctaagccgatcacaactttatct 36100427 Query: 309 gacactttaatttctcgaatgagagaaaaaagtgtggaaaacaacgggaaatatgtagct 368 |||| |||| | |||||||||||||||||||||| |||||||| |||||||||||||| Sbjct: 36100426 gacattttagtatctcgaatgagagaaaaaagtgccgaaaacaatgggaaatatgtagcg 36100367 Query: 369 gtgcatctccgttttgaagagg 390 |||||||||||||||||||||| Sbjct: 36100366 gtgcatctccgttttgaagagg 36100345 Score = 165 bits (83), Expect = 2e-37 Identities = 149/171 (87%) Strand = Plus / Minus Query: 15 cactttgtccaacgtttgaaaaatgatgttcgagtggttgacaaggtgcctggattcata 74 ||||| |||||||| |||||||||||||| ||||| |||||||||||||||| || || Sbjct: 36100852 cacttcgtccaacgattgaaaaatgatgtccgagtagttgacaaggtgcctgagtttatt 36100793 Query: 75 atggagcggtttagtaacaacttgagtaatgtttataatttcaagataaaggcttggtct 134 |||||| ||||| || |||| ||||||||||| | ||||||||||||||||||||||||| Sbjct: 36100792 atggagaggtttggtcacaatttgagtaatgtgtttaatttcaagataaaggcttggtct 36100733 Query: 135 cctattcagtactacaaagatgttgttcttccgaagttgattgaagaaagg 185 |||| | ||||||||||| | ||||||||| |||||||| ||||||||| Sbjct: 36100732 tctatccgatactacaaagaagctgttcttcctaagttgatcgaagaaagg 36100682 Score = 151 bits (76), Expect = 3e-33 Identities = 148/173 (85%), Gaps = 1/173 (0%) Strand = Plus / Minus Query: 388 aggatatggttgcgttctcttgctgtgtctttgacggtggtgatgaggnnnnnnnggaat 447 ||||||||||||| |||||||| |||||||| ||||| ||||| ||| |||| Sbjct: 36100205 aggatatggttgcattctcttgttgtgtcttcgacgggggtgaaaaggagaagaaggaac 36100146 Query: 448 tggatgaggccagggaaagaggctggcgtggaaaatttactaggcctggacgtgtaataa 507 |||||| |||||||| || || ||| | ||||| ||||||||||| ||||||||||||| Sbjct: 36100145 tggatgcagccagggagaggggttggagaggaaagtttactaggccaggacgtgtaataa 36100086 Query: 508 ggcctggagcaataaggatgaatggtaaaatgtccacttacacctttggaggt 560 ||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 36100085 ggcctggagcaataaggatgaatgg-gaaatgtccacttacacctttggaggt 36100034
>dbj|AP003241.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0408C03 Length = 141273 Score = 218 bits (110), Expect = 2e-53 Identities = 179/202 (88%) Strand = Plus / Minus Query: 189 ataaggatatcaccttttgcaaatcggctttcagttgatgctccgcctgctgttcagcga 248 ||||||||||||||||||||||| || || || |||||||||| | |||||||| || Sbjct: 113271 ataaggatatcaccttttgcaaaccgactgtcctttgatgctccatcagctgttcaacgg 113212 Query: 249 ctgagatgtctggctaactttgaagccttaaagttttctaaaccaatcactgctttatct 308 |||||||||||||||| ||||||||||||||||||||||| || ||||| |||||||| Sbjct: 113211 ttgagatgtctggctaattttgaagccttaaagttttctaagccgatcacaactttatct 113152 Query: 309 gacactttaatttctcgaatgagagaaaaaagtgtggaaaacaacgggaaatatgtagct 368 |||| |||| | |||||||||||||||||||||| |||||||| |||||||||||||| Sbjct: 113151 gacattttagtatctcgaatgagagaaaaaagtgccgaaaacaatgggaaatatgtagcg 113092 Query: 369 gtgcatctccgttttgaagagg 390 |||||||||||||||||||||| Sbjct: 113091 gtgcatctccgttttgaagagg 113070 Score = 165 bits (83), Expect = 2e-37 Identities = 149/171 (87%) Strand = Plus / Minus Query: 15 cactttgtccaacgtttgaaaaatgatgttcgagtggttgacaaggtgcctggattcata 74 ||||| |||||||| |||||||||||||| ||||| |||||||||||||||| || || Sbjct: 113577 cacttcgtccaacgattgaaaaatgatgtccgagtagttgacaaggtgcctgagtttatt 113518 Query: 75 atggagcggtttagtaacaacttgagtaatgtttataatttcaagataaaggcttggtct 134 |||||| ||||| || |||| ||||||||||| | ||||||||||||||||||||||||| Sbjct: 113517 atggagaggtttggtcacaatttgagtaatgtgtttaatttcaagataaaggcttggtct 113458 Query: 135 cctattcagtactacaaagatgttgttcttccgaagttgattgaagaaagg 185 |||| | ||||||||||| | ||||||||| |||||||| ||||||||| Sbjct: 113457 tctatccgatactacaaagaagctgttcttcctaagttgatcgaagaaagg 113407 Score = 151 bits (76), Expect = 3e-33 Identities = 148/173 (85%), Gaps = 1/173 (0%) Strand = Plus / Minus Query: 388 aggatatggttgcgttctcttgctgtgtctttgacggtggtgatgaggnnnnnnnggaat 447 ||||||||||||| |||||||| |||||||| ||||| ||||| ||| |||| Sbjct: 112930 aggatatggttgcattctcttgttgtgtcttcgacgggggtgaaaaggagaagaaggaac 112871 Query: 448 tggatgaggccagggaaagaggctggcgtggaaaatttactaggcctggacgtgtaataa 507 |||||| |||||||| || || ||| | ||||| ||||||||||| ||||||||||||| Sbjct: 112870 tggatgcagccagggagaggggttggagaggaaagtttactaggccaggacgtgtaataa 112811 Query: 508 ggcctggagcaataaggatgaatggtaaaatgtccacttacacctttggaggt 560 ||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 112810 ggcctggagcaataaggatgaatgg-gaaatgtccacttacacctttggaggt 112759
>gb|AC117265.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1281_H05, complete sequence Length = 163130 Score = 127 bits (64), Expect = 4e-26 Identities = 130/152 (85%) Strand = Plus / Plus Query: 34 aaaatgatgttcgagtggttgacaaggtgcctggattcataatggagcggtttagtaaca 93 |||||||||| ||||| ||||| |||||||||| || ||||||||||| ||| | ||| Sbjct: 27071 aaaatgatgtacgagtagttgaaaaggtgcctgattttataatggagcgatttggccaca 27130 Query: 94 acttgagtaatgtttataatttcaagataaaggcttggtctcctattcagtactacaaag 153 | | || ||||| | ||||||||||||||||||||||| |||||||| |||||||||| Sbjct: 27131 atcttagcaatgtattcaatttcaagataaaggcttggtcccctattcaatactacaaag 27190 Query: 154 atgttgttcttccgaagttgattgaagaaagg 185 ||| ||||||||| ||||||||||| |||||| Sbjct: 27191 atgctgttcttcctaagttgattgaggaaagg 27222 Score = 79.8 bits (40), Expect = 9e-12 Identities = 139/173 (80%), Gaps = 1/173 (0%) Strand = Plus / Plus Query: 388 aggatatggttgcgttctcttgctgtgtctttgacggtggtgatgaggnnnnnnnggaat 447 ||||||||||||| ||||| || ||||||| ||| ||||||||||||| |||| Sbjct: 28154 aggatatggttgccttctcatgttgtgtctatgatggtggtgatgaggagaagaaggaaa 28213 Query: 448 tggatgaggccagggaaagaggctggcgtggaaaatttactaggcctggacgtgtaataa 507 || ||| ||||| |||| ||| ||| | || || || |||| || ||||||||||||| Sbjct: 28214 tgaatgcagccagagaaataggttggagagggaagttcactaagcgaggacgtgtaataa 28273 Query: 508 ggcctggagcaataaggatgaatggtaaaatgtccacttacacctttggaggt 560 |||| |||| ||||| ||||| || |||||||||||| |||||||||||||| Sbjct: 28274 ggccaggagtgataagaatgaacgg-aaaatgtccactcacacctttggaggt 28325 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 557 aggttggattaatgcttcgtggaat 581 ||||||| ||||||||||||||||| Sbjct: 28500 aggttgggttaatgcttcgtggaat 28524
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 127 bits (64), Expect = 4e-26 Identities = 130/152 (85%) Strand = Plus / Plus Query: 34 aaaatgatgttcgagtggttgacaaggtgcctggattcataatggagcggtttagtaaca 93 |||||||||| ||||| ||||| |||||||||| || ||||||||||| ||| | ||| Sbjct: 22437664 aaaatgatgtacgagtagttgaaaaggtgcctgattttataatggagcgatttggccaca 22437723 Query: 94 acttgagtaatgtttataatttcaagataaaggcttggtctcctattcagtactacaaag 153 | | || ||||| | ||||||||||||||||||||||| |||||||| |||||||||| Sbjct: 22437724 atcttagcaatgtattcaatttcaagataaaggcttggtcccctattcaatactacaaag 22437783 Query: 154 atgttgttcttccgaagttgattgaagaaagg 185 ||| ||||||||| ||||||||||| |||||| Sbjct: 22437784 atgctgttcttcctaagttgattgaggaaagg 22437815 Score = 79.8 bits (40), Expect = 9e-12 Identities = 139/173 (80%), Gaps = 1/173 (0%) Strand = Plus / Plus Query: 388 aggatatggttgcgttctcttgctgtgtctttgacggtggtgatgaggnnnnnnnggaat 447 ||||||||||||| ||||| || ||||||| ||| ||||||||||||| |||| Sbjct: 22438747 aggatatggttgccttctcatgttgtgtctatgatggtggtgatgaggagaagaaggaaa 22438806 Query: 448 tggatgaggccagggaaagaggctggcgtggaaaatttactaggcctggacgtgtaataa 507 || ||| ||||| |||| ||| ||| | || || || |||| || ||||||||||||| Sbjct: 22438807 tgaatgcagccagagaaataggttggagagggaagttcactaagcgaggacgtgtaataa 22438866 Query: 508 ggcctggagcaataaggatgaatggtaaaatgtccacttacacctttggaggt 560 |||| |||| ||||| ||||| || |||||||||||| |||||||||||||| Sbjct: 22438867 ggccaggagtgataagaatgaacgg-aaaatgtccactcacacctttggaggt 22438918 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 557 aggttggattaatgcttcgtggaat 581 ||||||| ||||||||||||||||| Sbjct: 22439093 aggttgggttaatgcttcgtggaat 22439117
>ref|NM_101366.1| Arabidopsis thaliana unknown protein AT1G14970 mRNA, complete cds Length = 1689 Score = 93.7 bits (47), Expect = 6e-16 Identities = 68/75 (90%) Strand = Plus / Plus Query: 353 cgggaaatatgtagctgtgcatctccgttttgaagaggatatggttgcgttctcttgctg 412 ||||||||| || |||||||||| |||||||||||||||||||||||||||||||| || Sbjct: 975 cgggaaatacgtttctgtgcatcttcgttttgaagaggatatggttgcgttctcttgttg 1034 Query: 413 tgtctttgacggtgg 427 ||| ||||| ||||| Sbjct: 1035 tgtatttgatggtgg 1049
>gb|AC012189.3|T15D22 Arabidopsis thaliana chromosome 1 BAC T15D22 sequence, complete sequence Length = 23652 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 388 aggatatggttgcgttctcttgctgtgtctttgacggtgg 427 |||||||||||||||||||||| ||||| ||||| ||||| Sbjct: 2125 aggatatggttgcgttctcttgttgtgtatttgatggtgg 2086 Score = 44.1 bits (22), Expect = 0.51 Identities = 34/38 (89%) Strand = Plus / Minus Query: 353 cgggaaatatgtagctgtgcatctccgttttgaagagg 390 ||||||||| || |||||||||| ||||||||||||| Sbjct: 2287 cgggaaatacgtttctgtgcatcttcgttttgaagagg 2250
>gb|AC006917.6|AC006917 Genomic sequence for Arabidopsis thaliana BAC F10B6 from chromosome I, complete sequence Length = 132699 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 388 aggatatggttgcgttctcttgctgtgtctttgacggtgg 427 |||||||||||||||||||||| ||||| ||||| ||||| Sbjct: 131124 aggatatggttgcgttctcttgttgtgtatttgatggtgg 131085 Score = 44.1 bits (22), Expect = 0.51 Identities = 34/38 (89%) Strand = Plus / Minus Query: 353 cgggaaatatgtagctgtgcatctccgttttgaagagg 390 ||||||||| || |||||||||| ||||||||||||| Sbjct: 131286 cgggaaatacgtttctgtgcatcttcgttttgaagagg 131249
>gb|AC146775.8| Medicago truncatula clone mth2-95g14, complete sequence Length = 139593 Score = 52.0 bits (26), Expect = 0.002 Identities = 62/74 (83%) Strand = Plus / Minus Query: 183 agggtcataaggatatcaccttttgcaaatcggctttcagttgatgctccgcctgctgtt 242 ||||| |||||||| ||||||||||||||| | | ||| ||||||||| |||||||| Sbjct: 98337 agggttataaggatctcaccttttgcaaatagattgtcatatgatgctcctcctgctgtc 98278 Query: 243 cagcgactgagatg 256 ||||| || ||||| Sbjct: 98277 cagcgtctcagatg 98264 Score = 48.1 bits (24), Expect = 0.032 Identities = 36/40 (90%) Strand = Plus / Minus Query: 388 aggatatggttgcgttctcttgctgtgtctttgacggtgg 427 ||||||||||||| |||||||| ||||| ||||| ||||| Sbjct: 98036 aggatatggttgctttctcttgttgtgtttttgatggtgg 97997
>gb|AC073090.8| Homo sapiens BAC clone RP11-328J2 from 7, complete sequence Length = 116557 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 109 ataatttcaagataaaggctt 129 ||||||||||||||||||||| Sbjct: 18148 ataatttcaagataaaggctt 18128
>emb|AL022720.1|HS357K22 Human DNA sequence from clone RP3-357K22 on chromosome Xq27.1-27.3, complete sequence Length = 145638 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 325 gaatgagagaaaaaagtgtggaaaa 349 ||||||||||||||||| ||||||| Sbjct: 119597 gaatgagagaaaaaagtatggaaaa 119621
>gb|AC027013.7| Homo sapiens chromosome 15, clone RP11-398J10, complete sequence Length = 196215 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 256 gtctggctaactttgaagcct 276 ||||||||||||||||||||| Sbjct: 26593 gtctggctaactttgaagcct 26573
>gb|AC027547.8| Homo sapiens chromosome 15, clone RP11-18P13, complete sequence Length = 83003 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 256 gtctggctaactttgaagcct 276 ||||||||||||||||||||| Sbjct: 2474 gtctggctaactttgaagcct 2494
>gb|AC015950.8|AC015950 Homo sapiens, clone RP11-56G9, complete sequence Length = 114532 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 256 gtctggctaactttgaagcct 276 ||||||||||||||||||||| Sbjct: 29970 gtctggctaactttgaagcct 29950
>emb|CT737394.2| Pan troglodytes chromosome X clone PTB-130F19 map Xq28, complete sequence Length = 188890 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 325 gaatgagagaaaaaagtgtggaaaa 349 ||||||||||||||||| ||||||| Sbjct: 74000 gaatgagagaaaaaagtatggaaaa 74024
>gb|AC004061.1|AC004061 Homo sapiens chromosome 4 clone B299F15 map 4q21, complete sequence Length = 117101 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 332 agaaaaaagtgtggaaaacaa 352 ||||||||||||||||||||| Sbjct: 10349 agaaaaaagtgtggaaaacaa 10329
>ref|NM_126209.2| Arabidopsis thaliana unknown protein AT2G01480 mRNA, complete cds Length = 2610 Score = 40.1 bits (20), Expect = 7.9 Identities = 35/40 (87%) Strand = Plus / Plus Query: 367 ctgtgcatctccgttttgaagaggatatggttgcgttctc 406 |||| ||||| |||||||||||||| ||||| || ||||| Sbjct: 1244 ctgtacatctgcgttttgaagaggacatggtagctttctc 1283
>gb|AC110501.26| Mus musculus chromosome 9, clone RP24-448H20, complete sequence Length = 154359 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 407 ttgctgtgtctttgacggtg 426 |||||||||||||||||||| Sbjct: 29506 ttgctgtgtctttgacggtg 29487
>gb|AC114002.4| Mus musculus BAC clone RP23-165H7 from 12, complete sequence Length = 200112 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 330 agagaaaaaagtgtggaaaa 349 |||||||||||||||||||| Sbjct: 77100 agagaaaaaagtgtggaaaa 77119
>gb|AC166057.2| Mus musculus BAC clone RP23-385D11 from chromosome 14, complete sequence Length = 198165 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 264 aactttgaagccttaaagttttct 287 |||| ||||||||||||||||||| Sbjct: 1181 aactgtgaagccttaaagttttct 1204
>gb|AC138087.17| Medicago truncatula clone mth2-22p8, complete sequence Length = 130194 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 actacaaagatgttgttctt 164 |||||||||||||||||||| Sbjct: 16723 actacaaagatgttgttctt 16704
>emb|AL391825.15| Human DNA sequence from clone RP11-456P18 on chromosome 1 Contains the 3' end of the ATF6 gene for activating transcription factor 6, a proteasome (prosome, macropain) activator subunit 1 (PA28 alpha)(PSME1) pseudogene, the 3' end of a novel gene (DKFZP586L151) and a CpG island, complete sequence Length = 211662 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 91 acaacttgagtaatgtttataatt 114 ||||||||||||| |||||||||| Sbjct: 149934 acaacttgagtaaggtttataatt 149957
>emb|AL358134.11| Human DNA sequence from clone RP11-306O13 on chromosome 6, complete sequence Length = 144828 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 139 ttcagtactacaaagatgtt 158 |||||||||||||||||||| Sbjct: 52604 ttcagtactacaaagatgtt 52623
>emb|AL139239.18| Human DNA sequence from clone RP11-19C6 on chromosome 10 Contains the 5' end of the CRTAC1 gene for cartilage acidic protein 1 and two CpG islands, complete sequence Length = 161235 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 453 gaggccagggaaagaggctg 472 |||||||||||||||||||| Sbjct: 32281 gaggccagggaaagaggctg 32300
>emb|AL133381.6| Human DNA sequence from clone RP3-406H21 on chromosome X Contains the 5' end of the IL1RAPL2 gene for interleukin 1 receptor accessory protein-like 2 and a CpG island, complete sequence Length = 43577 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 513 ggagcaataaggatgaatgg 532 |||||||||||||||||||| Sbjct: 7781 ggagcaataaggatgaatgg 7800
>emb|AJ745714.1| Botrytis tulipae partial rpb2 gene for RNA polymerase II second largest subunit, exon 1, strain BT9901 Length = 1093 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 317 aatttctcgaatgagagaaa 336 |||||||||||||||||||| Sbjct: 600 aatttctcgaatgagagaaa 581
>emb|AJ745713.1| Botrytis tulipae partial rpb2 gene for RNA polymerase II second largest subunit, exon 1, strain BT9830 Length = 1093 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 317 aatttctcgaatgagagaaa 336 |||||||||||||||||||| Sbjct: 600 aatttctcgaatgagagaaa 581
>emb|AJ745712.1| Botrytis tulipae partial rpb2 gene for RNA polymerase II second largest subunit, exon 1, strain BT9001 Length = 1093 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 317 aatttctcgaatgagagaaa 336 |||||||||||||||||||| Sbjct: 600 aatttctcgaatgagagaaa 581
>emb|CR786568.9| Zebrafish DNA sequence from clone DKEY-251I10 in linkage group 5, complete sequence Length = 134388 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 336 aaaagtgtggaaaacaacgg 355 |||||||||||||||||||| Sbjct: 42711 aaaagtgtggaaaacaacgg 42692
>emb|AL596252.11| Mouse DNA sequence from clone RP23-123O10 on chromosome 11 Contains the 3' end of the Acac gene for acetyl-Coenzyme A carboxylase, complete sequence Length = 187803 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 attcagtactacaaagatgt 157 |||||||||||||||||||| Sbjct: 67617 attcagtactacaaagatgt 67598
>gb|AC154795.2| Mus musculus BAC clone RP24-486D21 from chromosome 14, complete sequence Length = 153985 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 264 aactttgaagccttaaagttttct 287 |||| ||||||||||||||||||| Sbjct: 25090 aactgtgaagccttaaagttttct 25067
>gb|AY128818.1| Arabidopsis thaliana similar to axi 1 protein (At2g01480) mRNA, complete cds Length = 1903 Score = 40.1 bits (20), Expect = 7.9 Identities = 35/40 (87%) Strand = Plus / Plus Query: 367 ctgtgcatctccgttttgaagaggatatggttgcgttctc 406 |||| ||||| |||||||||||||| ||||| || ||||| Sbjct: 986 ctgtacatctgcgttttgaagaggacatggtagctttctc 1025
>gb|AY093109.1| Arabidopsis thaliana similar to axi 1 protein (At2g01480) mRNA, complete cds Length = 2610 Score = 40.1 bits (20), Expect = 7.9 Identities = 35/40 (87%) Strand = Plus / Plus Query: 367 ctgtgcatctccgttttgaagaggatatggttgcgttctc 406 |||| ||||| |||||||||||||| ||||| || ||||| Sbjct: 1244 ctgtacatctgcgttttgaagaggacatggtagctttctc 1283
>gb|AC092935.6| Homo sapiens 3q BAC RP11-766D8 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 19701 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 tttataatttcaagataaag 125 |||||||||||||||||||| Sbjct: 15431 tttataatttcaagataaag 15450
>gb|AC157774.5| Mus musculus chromosome 8, clone RP23-423E20, complete sequence Length = 198967 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 332 agaaaaaagtgtggaaaaca 351 |||||||||||||||||||| Sbjct: 27942 agaaaaaagtgtggaaaaca 27961
>emb|BX818819.1|CNS0A7ZL Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB16ZE01 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2476 Score = 40.1 bits (20), Expect = 7.9 Identities = 35/40 (87%) Strand = Plus / Plus Query: 367 ctgtgcatctccgttttgaagaggatatggttgcgttctc 406 |||| ||||| |||||||||||||| ||||| || ||||| Sbjct: 1193 ctgtacatctgcgttttgaagaggacatggtagctttctc 1232
>gb|AC069531.9| Homo sapiens 3 BAC RP11-592B18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 63325 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 tttataatttcaagataaag 125 |||||||||||||||||||| Sbjct: 15424 tttataatttcaagataaag 15443
>gb|U77828.1| Cryptosporidium parvum putative glycan synthetase gene, complete cds Length = 7507 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 295 tcactgctttatctgacactttaa 318 |||||||||||||||||| ||||| Sbjct: 7241 tcactgctttatctgacaatttaa 7218
>gb|BT024159.1| Zea mays clone EL01N0431D04 mRNA sequence Length = 1665 Score = 40.1 bits (20), Expect = 7.9 Identities = 35/40 (87%) Strand = Plus / Plus Query: 357 aaatatgtagctgtgcatctccgttttgaagaggatatgg 396 ||||||| || | |||||||||||||||| ||||||||| Sbjct: 729 aaatatgcagttttgcatctccgttttgataaggatatgg 768
>dbj|AK066696.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013073D17, full insert sequence Length = 1958 Score = 40.1 bits (20), Expect = 7.9 Identities = 35/40 (87%) Strand = Plus / Plus Query: 357 aaatatgtagctgtgcatctccgttttgaagaggatatgg 396 ||||||| || | |||||||||||||||| ||||||||| Sbjct: 925 aaatatgcagttttgcatctccgttttgataaggatatgg 964
>emb|AL845421.9| Zebrafish DNA sequence from clone CH211-199I15 in linkage group 20, complete sequence Length = 148289 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 101 taatgtttataatttcaaga 120 |||||||||||||||||||| Sbjct: 42404 taatgtttataatttcaaga 42423
>gb|AY107339.1| Zea mays PCO142374 mRNA sequence Length = 961 Score = 40.1 bits (20), Expect = 7.9 Identities = 35/40 (87%) Strand = Plus / Plus Query: 357 aaatatgtagctgtgcatctccgttttgaagaggatatgg 396 ||||||| || | |||||||||||||||| ||||||||| Sbjct: 109 aaatatgcagttttgcatctccgttttgataaggatatgg 148
>gb|AC005598.6|AC005598 Homo sapiens chromosome 4 clone C0024K08 map 4p16, complete sequence Length = 166743 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 305 atctgacactttaatttctc 324 |||||||||||||||||||| Sbjct: 37086 atctgacactttaatttctc 37067 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,290,342 Number of Sequences: 3902068 Number of extensions: 5290342 Number of successful extensions: 101877 Number of sequences better than 10.0: 45 Number of HSP's better than 10.0 without gapping: 45 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 101693 Number of HSP's gapped (non-prelim): 177 length of query: 581 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 558 effective length of database: 17,143,297,704 effective search space: 9565960118832 effective search space used: 9565960118832 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)