| Clone Name | bags37h19 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_473246.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 648 Score = 274 bits (138), Expect = 3e-70 Identities = 249/286 (87%) Strand = Plus / Plus Query: 28 aagctcctcaaggcctcacagtgctacctttcgaccaccgccggccccatcgccggggtg 87 |||||||| | |||||| ||||||||||| || ||||| |||||||| |||||||| || Sbjct: 319 aagctcctgagggcctcccagtgctacctgtccaccacggccggcccgatcgccggcatg 378 Query: 88 cttttcgtatccacggagagggtggccttccgcagcgaccggttgctggcgctgacctcg 147 || ||| |||| ||||||||| | || ||||| |||||||||| ||||||||||||| | Sbjct: 379 ctcttcatatcgacggagaggatcgcgttccggagcgaccggtcgctggcgctgaccacc 438 Query: 148 cccaagggcgacagggtgcgggtgccgtacaaggtggccgtcccgctgcggagggtgaag 207 || | ||||||| |||||| |||||||||||||||||| |||| ||| ||||||||||| Sbjct: 439 ccgagcggcgacacggtgcgtgtgccgtacaaggtggccatccctctgaggagggtgaag 498 Query: 208 gcggccatgccgagcgagaaccagcacctgccggagcagaagtacgtccagctggtgacg 267 |||||| ||||||||||||| |||||| |||||||||||||||||||||| ||||||| Sbjct: 499 acggccaagccgagcgagaacaagcaccggccggagcagaagtacgtccaggtggtgacc 558 Query: 268 gacgacggcttcgagttctggttcatgggctttgtcggctaccagg 313 ||||||||||||||||||||||||||||| || ||| ||| ||||| Sbjct: 559 gacgacggcttcgagttctggttcatgggattcgtcagcttccagg 604
>emb|AL663019.2|OSJN00221 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0038O10, complete sequence Length = 141545 Score = 274 bits (138), Expect = 3e-70 Identities = 249/286 (87%) Strand = Plus / Minus Query: 28 aagctcctcaaggcctcacagtgctacctttcgaccaccgccggccccatcgccggggtg 87 |||||||| | |||||| ||||||||||| || ||||| |||||||| |||||||| || Sbjct: 97965 aagctcctgagggcctcccagtgctacctgtccaccacggccggcccgatcgccggcatg 97906 Query: 88 cttttcgtatccacggagagggtggccttccgcagcgaccggttgctggcgctgacctcg 147 || ||| |||| ||||||||| | || ||||| |||||||||| ||||||||||||| | Sbjct: 97905 ctcttcatatcgacggagaggatcgcgttccggagcgaccggtcgctggcgctgaccacc 97846 Query: 148 cccaagggcgacagggtgcgggtgccgtacaaggtggccgtcccgctgcggagggtgaag 207 || | ||||||| |||||| |||||||||||||||||| |||| ||| ||||||||||| Sbjct: 97845 ccgagcggcgacacggtgcgtgtgccgtacaaggtggccatccctctgaggagggtgaag 97786 Query: 208 gcggccatgccgagcgagaaccagcacctgccggagcagaagtacgtccagctggtgacg 267 |||||| ||||||||||||| |||||| |||||||||||||||||||||| ||||||| Sbjct: 97785 acggccaagccgagcgagaacaagcaccggccggagcagaagtacgtccaggtggtgacc 97726 Query: 268 gacgacggcttcgagttctggttcatgggctttgtcggctaccagg 313 ||||||||||||||||||||||||||||| || ||| ||| ||||| Sbjct: 97725 gacgacggcttcgagttctggttcatgggattcgtcagcttccagg 97680 Score = 81.8 bits (41), Expect = 2e-12 Identities = 122/149 (81%) Strand = Plus / Minus Query: 46 cagtgctacctttcgaccaccgccggccccatcgccggggtgcttttcgtatccacggag 105 ||||||||||| | ||||||| ||| |||||||||||| |||| ||||| ||||| || Sbjct: 93057 cagtgctacctgtacaccaccggcgggcccatcgccgggatgctcttcgtctccaccaag 92998 Query: 106 agggtggccttccgcagcgaccggttgctggcgctgacctcgcccaagggcgacagggtg 165 | ||| |||||||||||||||||| | | || | |||||| ||||||||||| | | Sbjct: 92997 aaggtcgccttccgcagcgaccggccggtcacggtcacctcggccaagggcgacgtcgcg 92938 Query: 166 cgggtgccgtacaaggtggccgtcccgct 194 |||||||| |||||||||| |||||||| Sbjct: 92937 cgggtgccctacaaggtggtggtcccgct 92909 Score = 56.0 bits (28), Expect = 1e-04 Identities = 52/60 (86%) Strand = Plus / Minus Query: 237 gccggagcagaagtacgtccagctggtgacggacgacggcttcgagttctggttcatggg 296 ||||||| |||||||| |||| | || |||| |||||||||||||||||||||||||| Sbjct: 92866 gccggaggagaagtacatccacgtcgtcacggtggacggcttcgagttctggttcatggg 92807
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 274 bits (138), Expect = 3e-70 Identities = 249/286 (87%) Strand = Plus / Minus Query: 28 aagctcctcaaggcctcacagtgctacctttcgaccaccgccggccccatcgccggggtg 87 |||||||| | |||||| ||||||||||| || ||||| |||||||| |||||||| || Sbjct: 26321388 aagctcctgagggcctcccagtgctacctgtccaccacggccggcccgatcgccggcatg 26321329 Query: 88 cttttcgtatccacggagagggtggccttccgcagcgaccggttgctggcgctgacctcg 147 || ||| |||| ||||||||| | || ||||| |||||||||| ||||||||||||| | Sbjct: 26321328 ctcttcatatcgacggagaggatcgcgttccggagcgaccggtcgctggcgctgaccacc 26321269 Query: 148 cccaagggcgacagggtgcgggtgccgtacaaggtggccgtcccgctgcggagggtgaag 207 || | ||||||| |||||| |||||||||||||||||| |||| ||| ||||||||||| Sbjct: 26321268 ccgagcggcgacacggtgcgtgtgccgtacaaggtggccatccctctgaggagggtgaag 26321209 Query: 208 gcggccatgccgagcgagaaccagcacctgccggagcagaagtacgtccagctggtgacg 267 |||||| ||||||||||||| |||||| |||||||||||||||||||||| ||||||| Sbjct: 26321208 acggccaagccgagcgagaacaagcaccggccggagcagaagtacgtccaggtggtgacc 26321149 Query: 268 gacgacggcttcgagttctggttcatgggctttgtcggctaccagg 313 ||||||||||||||||||||||||||||| || ||| ||| ||||| Sbjct: 26321148 gacgacggcttcgagttctggttcatgggattcgtcagcttccagg 26321103 Score = 81.8 bits (41), Expect = 2e-12 Identities = 122/149 (81%) Strand = Plus / Minus Query: 46 cagtgctacctttcgaccaccgccggccccatcgccggggtgcttttcgtatccacggag 105 ||||||||||| | ||||||| ||| |||||||||||| |||| ||||| ||||| || Sbjct: 26316480 cagtgctacctgtacaccaccggcgggcccatcgccgggatgctcttcgtctccaccaag 26316421 Query: 106 agggtggccttccgcagcgaccggttgctggcgctgacctcgcccaagggcgacagggtg 165 | ||| |||||||||||||||||| | | || | |||||| ||||||||||| | | Sbjct: 26316420 aaggtcgccttccgcagcgaccggccggtcacggtcacctcggccaagggcgacgtcgcg 26316361 Query: 166 cgggtgccgtacaaggtggccgtcccgct 194 |||||||| |||||||||| |||||||| Sbjct: 26316360 cgggtgccctacaaggtggtggtcccgct 26316332 Score = 56.0 bits (28), Expect = 1e-04 Identities = 52/60 (86%) Strand = Plus / Minus Query: 237 gccggagcagaagtacgtccagctggtgacggacgacggcttcgagttctggttcatggg 296 ||||||| |||||||| |||| | || |||| |||||||||||||||||||||||||| Sbjct: 26316289 gccggaggagaagtacatccacgtcgtcacggtggacggcttcgagttctggttcatggg 26316230
>dbj|AK104433.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-208-C06, full insert sequence Length = 1054 Score = 274 bits (138), Expect = 3e-70 Identities = 249/286 (87%) Strand = Plus / Plus Query: 28 aagctcctcaaggcctcacagtgctacctttcgaccaccgccggccccatcgccggggtg 87 |||||||| | |||||| ||||||||||| || ||||| |||||||| |||||||| || Sbjct: 436 aagctcctgagggcctcccagtgctacctgtccaccacggccggcccgatcgccggcatg 495 Query: 88 cttttcgtatccacggagagggtggccttccgcagcgaccggttgctggcgctgacctcg 147 || ||| |||| ||||||||| | || ||||| |||||||||| ||||||||||||| | Sbjct: 496 ctcttcatatcgacggagaggatcgcgttccggagcgaccggtcgctggcgctgaccacc 555 Query: 148 cccaagggcgacagggtgcgggtgccgtacaaggtggccgtcccgctgcggagggtgaag 207 || | ||||||| |||||| |||||||||||||||||| |||| ||| ||||||||||| Sbjct: 556 ccgagcggcgacacggtgcgtgtgccgtacaaggtggccatccctctgaggagggtgaag 615 Query: 208 gcggccatgccgagcgagaaccagcacctgccggagcagaagtacgtccagctggtgacg 267 |||||| ||||||||||||| |||||| |||||||||||||||||||||| ||||||| Sbjct: 616 acggccaagccgagcgagaacaagcaccggccggagcagaagtacgtccaggtggtgacc 675 Query: 268 gacgacggcttcgagttctggttcatgggctttgtcggctaccagg 313 ||||||||||||||||||||||||||||| || ||| ||| ||||| Sbjct: 676 gacgacggcttcgagttctggttcatgggattcgtcagcttccagg 721
>dbj|AK099545.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013033A11, full insert sequence Length = 1073 Score = 274 bits (138), Expect = 3e-70 Identities = 249/286 (87%) Strand = Plus / Plus Query: 28 aagctcctcaaggcctcacagtgctacctttcgaccaccgccggccccatcgccggggtg 87 |||||||| | |||||| ||||||||||| || ||||| |||||||| |||||||| || Sbjct: 437 aagctcctgagggcctcccagtgctacctgtccaccacggccggcccgatcgccggcatg 496 Query: 88 cttttcgtatccacggagagggtggccttccgcagcgaccggttgctggcgctgacctcg 147 || ||| |||| ||||||||| | || ||||| |||||||||| ||||||||||||| | Sbjct: 497 ctcttcatatcgacggagaggatcgcgttccggagcgaccggtcgctggcgctgaccacc 556 Query: 148 cccaagggcgacagggtgcgggtgccgtacaaggtggccgtcccgctgcggagggtgaag 207 || | ||||||| |||||| |||||||||||||||||| |||| ||| ||||||||||| Sbjct: 557 ccgagcggcgacacggtgcgtgtgccgtacaaggtggccatccctctgaggagggtgaag 616 Query: 208 gcggccatgccgagcgagaaccagcacctgccggagcagaagtacgtccagctggtgacg 267 |||||| ||||||||||||| |||||| |||||||||||||||||||||| ||||||| Sbjct: 617 acggccaagccgagcgagaacaagcaccggccggagcagaagtacgtccaggtggtgacc 676 Query: 268 gacgacggcttcgagttctggttcatgggctttgtcggctaccagg 313 ||||||||||||||||||||||||||||| || ||| ||| ||||| Sbjct: 677 gacgacggcttcgagttctggttcatgggattcgtcagcttccagg 722
>dbj|AK070324.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023051E03, full insert sequence Length = 1057 Score = 274 bits (138), Expect = 3e-70 Identities = 249/286 (87%) Strand = Plus / Plus Query: 28 aagctcctcaaggcctcacagtgctacctttcgaccaccgccggccccatcgccggggtg 87 |||||||| | |||||| ||||||||||| || ||||| |||||||| |||||||| || Sbjct: 436 aagctcctgagggcctcccagtgctacctgtccaccacggccggcccgatcgccggcatg 495 Query: 88 cttttcgtatccacggagagggtggccttccgcagcgaccggttgctggcgctgacctcg 147 || ||| |||| ||||||||| | || ||||| |||||||||| ||||||||||||| | Sbjct: 496 ctcttcatatcgacggagaggatcgcgttccggagcgaccggtcgctggcgctgaccacc 555 Query: 148 cccaagggcgacagggtgcgggtgccgtacaaggtggccgtcccgctgcggagggtgaag 207 || | ||||||| |||||| |||||||||||||||||| |||| ||| ||||||||||| Sbjct: 556 ccgagcggcgacacggtgcgtgtgccgtacaaggtggccatccctctgaggagggtgaag 615 Query: 208 gcggccatgccgagcgagaaccagcacctgccggagcagaagtacgtccagctggtgacg 267 |||||| ||||||||||||| |||||| |||||||||||||||||||||| ||||||| Sbjct: 616 acggccaagccgagcgagaacaagcaccggccggagcagaagtacgtccaggtggtgacc 675 Query: 268 gacgacggcttcgagttctggttcatgggctttgtcggctaccagg 313 ||||||||||||||||||||||||||||| || ||| ||| ||||| Sbjct: 676 gacgacggcttcgagttctggttcatgggattcgtcagcttccagg 721
>ref|XM_466939.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1157 Score = 182 bits (92), Expect = 8e-43 Identities = 236/284 (83%) Strand = Plus / Plus Query: 28 aagctcctcaaggcctcacagtgctacctttcgaccaccgccggccccatcgccggggtg 87 ||||| |||| ||| || ||||||||||| ||||| || ||||| || |||||||| || Sbjct: 475 aagctgctcagggcgtcgcagtgctacctgtcgacgacggccgggccgatcgccggcatg 534 Query: 88 cttttcgtatccacggagagggtggccttccgcagcgaccggttgctggcgctgacctcg 147 || ||||| || |||||| |||| || ||||||||||||||| ||||||| || || | Sbjct: 535 ctgttcgtgtcgacggagcgggtcgcgttccgcagcgaccggccgctggcggtgtccgcc 594 Query: 148 cccaagggcgacagggtgcgggtgccgtacaaggtggccgtcccgctgcggagggtgaag 207 || ||||||| |||||| || |||||||||||| || |||||||||||| ||||||| Sbjct: 595 ccgggcggcgacaaggtgcgcgtcccgtacaaggtgaccatcccgctgcggaaggtgaag 654 Query: 208 gcggccatgccgagcgagaaccagcacctgccggagcagaagtacgtccagctggtgacg 267 || |||| ||||||||||||| ||||| ||| |||||||||||| || || | || || Sbjct: 655 gccgccaagccgagcgagaacaagcacaagcccgagcagaagtacatcgaggtcgtcacc 714 Query: 268 gacgacggcttcgagttctggttcatgggctttgtcggctacca 311 ||||||||||||||||||||||||||||||| ||| ||||||| Sbjct: 715 aacgacggcttcgagttctggttcatgggcttcgtcagctacca 758
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 182 bits (92), Expect = 8e-43 Identities = 236/284 (83%) Strand = Plus / Minus Query: 28 aagctcctcaaggcctcacagtgctacctttcgaccaccgccggccccatcgccggggtg 87 ||||| |||| ||| || ||||||||||| ||||| || ||||| || |||||||| || Sbjct: 25546877 aagctgctcagggcgtcgcagtgctacctgtcgacgacggccgggccgatcgccggcatg 25546818 Query: 88 cttttcgtatccacggagagggtggccttccgcagcgaccggttgctggcgctgacctcg 147 || ||||| || |||||| |||| || ||||||||||||||| ||||||| || || | Sbjct: 25546817 ctgttcgtgtcgacggagcgggtcgcgttccgcagcgaccggccgctggcggtgtccgcc 25546758 Query: 148 cccaagggcgacagggtgcgggtgccgtacaaggtggccgtcccgctgcggagggtgaag 207 || ||||||| |||||| || |||||||||||| || |||||||||||| ||||||| Sbjct: 25546757 ccgggcggcgacaaggtgcgcgtcccgtacaaggtgaccatcccgctgcggaaggtgaag 25546698 Query: 208 gcggccatgccgagcgagaaccagcacctgccggagcagaagtacgtccagctggtgacg 267 || |||| ||||||||||||| ||||| ||| |||||||||||| || || | || || Sbjct: 25546697 gccgccaagccgagcgagaacaagcacaagcccgagcagaagtacatcgaggtcgtcacc 25546638 Query: 268 gacgacggcttcgagttctggttcatgggctttgtcggctacca 311 ||||||||||||||||||||||||||||||| ||| ||||||| Sbjct: 25546637 aacgacggcttcgagttctggttcatgggcttcgtcagctacca 25546594 Score = 54.0 bits (27), Expect = 5e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 46 cagtgctacctttcgaccaccgccggccccatcgccggggtgcttttcgtatcca 100 ||||||||||| | ||||||| |||||||||||||||| |||| ||||| |||| Sbjct: 25542270 cagtgctacctctacaccaccggcggccccatcgccgggatgctcttcgtctcca 25542216 Score = 48.1 bits (24), Expect = 0.029 Identities = 51/60 (85%) Strand = Plus / Minus Query: 237 gccggagcagaagtacgtccagctggtgacggacgacggcttcgagttctggttcatggg 296 |||||||||||||||| | || ||| || | |||||| |||||||||||||||||||| Sbjct: 25542076 gccggagcagaagtacatacacgtggccaccgtcgacgggttcgagttctggttcatggg 25542017
>dbj|AP005513.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0014E22 Length = 157627 Score = 182 bits (92), Expect = 8e-43 Identities = 236/284 (83%) Strand = Plus / Minus Query: 28 aagctcctcaaggcctcacagtgctacctttcgaccaccgccggccccatcgccggggtg 87 ||||| |||| ||| || ||||||||||| ||||| || ||||| || |||||||| || Sbjct: 16924 aagctgctcagggcgtcgcagtgctacctgtcgacgacggccgggccgatcgccggcatg 16865 Query: 88 cttttcgtatccacggagagggtggccttccgcagcgaccggttgctggcgctgacctcg 147 || ||||| || |||||| |||| || ||||||||||||||| ||||||| || || | Sbjct: 16864 ctgttcgtgtcgacggagcgggtcgcgttccgcagcgaccggccgctggcggtgtccgcc 16805 Query: 148 cccaagggcgacagggtgcgggtgccgtacaaggtggccgtcccgctgcggagggtgaag 207 || ||||||| |||||| || |||||||||||| || |||||||||||| ||||||| Sbjct: 16804 ccgggcggcgacaaggtgcgcgtcccgtacaaggtgaccatcccgctgcggaaggtgaag 16745 Query: 208 gcggccatgccgagcgagaaccagcacctgccggagcagaagtacgtccagctggtgacg 267 || |||| ||||||||||||| ||||| ||| |||||||||||| || || | || || Sbjct: 16744 gccgccaagccgagcgagaacaagcacaagcccgagcagaagtacatcgaggtcgtcacc 16685 Query: 268 gacgacggcttcgagttctggttcatgggctttgtcggctacca 311 ||||||||||||||||||||||||||||||| ||| ||||||| Sbjct: 16684 aacgacggcttcgagttctggttcatgggcttcgtcagctacca 16641 Score = 54.0 bits (27), Expect = 5e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 46 cagtgctacctttcgaccaccgccggccccatcgccggggtgcttttcgtatcca 100 ||||||||||| | ||||||| |||||||||||||||| |||| ||||| |||| Sbjct: 12317 cagtgctacctctacaccaccggcggccccatcgccgggatgctcttcgtctcca 12263 Score = 48.1 bits (24), Expect = 0.029 Identities = 51/60 (85%) Strand = Plus / Minus Query: 237 gccggagcagaagtacgtccagctggtgacggacgacggcttcgagttctggttcatggg 296 |||||||||||||||| | || ||| || | |||||| |||||||||||||||||||| Sbjct: 12123 gccggagcagaagtacatacacgtggccaccgtcgacgggttcgagttctggttcatggg 12064
>dbj|AP004067.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1581_H09 Length = 86699 Score = 182 bits (92), Expect = 8e-43 Identities = 236/284 (83%) Strand = Plus / Minus Query: 28 aagctcctcaaggcctcacagtgctacctttcgaccaccgccggccccatcgccggggtg 87 ||||| |||| ||| || ||||||||||| ||||| || ||||| || |||||||| || Sbjct: 38276 aagctgctcagggcgtcgcagtgctacctgtcgacgacggccgggccgatcgccggcatg 38217 Query: 88 cttttcgtatccacggagagggtggccttccgcagcgaccggttgctggcgctgacctcg 147 || ||||| || |||||| |||| || ||||||||||||||| ||||||| || || | Sbjct: 38216 ctgttcgtgtcgacggagcgggtcgcgttccgcagcgaccggccgctggcggtgtccgcc 38157 Query: 148 cccaagggcgacagggtgcgggtgccgtacaaggtggccgtcccgctgcggagggtgaag 207 || ||||||| |||||| || |||||||||||| || |||||||||||| ||||||| Sbjct: 38156 ccgggcggcgacaaggtgcgcgtcccgtacaaggtgaccatcccgctgcggaaggtgaag 38097 Query: 208 gcggccatgccgagcgagaaccagcacctgccggagcagaagtacgtccagctggtgacg 267 || |||| ||||||||||||| ||||| ||| |||||||||||| || || | || || Sbjct: 38096 gccgccaagccgagcgagaacaagcacaagcccgagcagaagtacatcgaggtcgtcacc 38037 Query: 268 gacgacggcttcgagttctggttcatgggctttgtcggctacca 311 ||||||||||||||||||||||||||||||| ||| ||||||| Sbjct: 38036 aacgacggcttcgagttctggttcatgggcttcgtcagctacca 37993 Score = 54.0 bits (27), Expect = 5e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 46 cagtgctacctttcgaccaccgccggccccatcgccggggtgcttttcgtatcca 100 ||||||||||| | ||||||| |||||||||||||||| |||| ||||| |||| Sbjct: 33669 cagtgctacctctacaccaccggcggccccatcgccgggatgctcttcgtctcca 33615 Score = 48.1 bits (24), Expect = 0.029 Identities = 51/60 (85%) Strand = Plus / Minus Query: 237 gccggagcagaagtacgtccagctggtgacggacgacggcttcgagttctggttcatggg 296 |||||||||||||||| | || ||| || | |||||| |||||||||||||||||||| Sbjct: 33475 gccggagcagaagtacatacacgtggccaccgtcgacgggttcgagttctggttcatggg 33416
>dbj|AK069779.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023031H22, full insert sequence Length = 1157 Score = 182 bits (92), Expect = 8e-43 Identities = 236/284 (83%) Strand = Plus / Plus Query: 28 aagctcctcaaggcctcacagtgctacctttcgaccaccgccggccccatcgccggggtg 87 ||||| |||| ||| || ||||||||||| ||||| || ||||| || |||||||| || Sbjct: 475 aagctgctcagggcgtcgcagtgctacctgtcgacgacggccgggccgatcgccggcatg 534 Query: 88 cttttcgtatccacggagagggtggccttccgcagcgaccggttgctggcgctgacctcg 147 || ||||| || |||||| |||| || ||||||||||||||| ||||||| || || | Sbjct: 535 ctgttcgtgtcgacggagcgggtcgcattccgcagcgaccggccgctggcggtgtccgcc 594 Query: 148 cccaagggcgacagggtgcgggtgccgtacaaggtggccgtcccgctgcggagggtgaag 207 || ||||||| |||||| || |||||||||||| || |||||||||||| ||||||| Sbjct: 595 ccgggcggcgacaaggtgcgcgtcccgtacaaggtgaccatcccgctgcggaaggtgaag 654 Query: 208 gcggccatgccgagcgagaaccagcacctgccggagcagaagtacgtccagctggtgacg 267 || |||| ||||||||||||| ||||| ||| |||||||||||| || || | || || Sbjct: 655 gccgccaagccgagcgagaacaagcacaagcccgagcagaagtacatcgaggtcgtcacc 714 Query: 268 gacgacggcttcgagttctggttcatgggctttgtcggctacca 311 ||||||||||||||||||||||||||||||| ||| ||||||| Sbjct: 715 aacgacggcttcgagttctggttcatgggcttcgtcagctacca 758
>ref|XM_473245.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 702 Score = 81.8 bits (41), Expect = 2e-12 Identities = 122/149 (81%) Strand = Plus / Plus Query: 46 cagtgctacctttcgaccaccgccggccccatcgccggggtgcttttcgtatccacggag 105 ||||||||||| | ||||||| ||| |||||||||||| |||| ||||| ||||| || Sbjct: 391 cagtgctacctgtacaccaccggcgggcccatcgccgggatgctcttcgtctccaccaag 450 Query: 106 agggtggccttccgcagcgaccggttgctggcgctgacctcgcccaagggcgacagggtg 165 | ||| |||||||||||||||||| | | || | |||||| ||||||||||| | | Sbjct: 451 aaggtcgccttccgcagcgaccggccggtcacggtcacctcggccaagggcgacgtcgcg 510 Query: 166 cgggtgccgtacaaggtggccgtcccgct 194 |||||||| |||||||||| |||||||| Sbjct: 511 cgggtgccctacaaggtggtggtcccgct 539 Score = 56.0 bits (28), Expect = 1e-04 Identities = 52/60 (86%) Strand = Plus / Plus Query: 237 gccggagcagaagtacgtccagctggtgacggacgacggcttcgagttctggttcatggg 296 ||||||| |||||||| |||| | || |||| |||||||||||||||||||||||||| Sbjct: 582 gccggaggagaagtacatccacgtcgtcacggtggacggcttcgagttctggttcatggg 641
>dbj|AK061581.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-H09, full insert sequence Length = 1103 Score = 81.8 bits (41), Expect = 2e-12 Identities = 122/149 (81%) Strand = Plus / Plus Query: 46 cagtgctacctttcgaccaccgccggccccatcgccggggtgcttttcgtatccacggag 105 ||||||||||| | ||||||| ||| |||||||||||| |||| ||||| ||||| || Sbjct: 514 cagtgctacctgtacaccaccggcgggcccatcgccgggatgctcttcgtctccaccaag 573 Query: 106 agggtggccttccgcagcgaccggttgctggcgctgacctcgcccaagggcgacagggtg 165 | ||| |||||||||||||||||| | | || | |||||| ||||||||||| | | Sbjct: 574 aaggtcgccttccgcagcgaccggccggtcacggtcacctcggccaagggcgacgtcgcg 633 Query: 166 cgggtgccgtacaaggtggccgtcccgct 194 |||||||| |||||||||| |||||||| Sbjct: 634 cgggtgccctacaaggtggtggtcccgct 662 Score = 56.0 bits (28), Expect = 1e-04 Identities = 52/60 (86%) Strand = Plus / Plus Query: 237 gccggagcagaagtacgtccagctggtgacggacgacggcttcgagttctggttcatggg 296 ||||||| |||||||| |||| | || |||| |||||||||||||||||||||||||| Sbjct: 705 gccggaggagaagtacatccacgtcgtcacggtggacggcttcgagttctggttcatggg 764
>ref|XM_466938.1| Oryza sativa (japonica cultivar-group), mRNA Length = 690 Score = 54.0 bits (27), Expect = 5e-04 Identities = 48/55 (87%) Strand = Plus / Plus Query: 46 cagtgctacctttcgaccaccgccggccccatcgccggggtgcttttcgtatcca 100 ||||||||||| | ||||||| |||||||||||||||| |||| ||||| |||| Sbjct: 379 cagtgctacctctacaccaccggcggccccatcgccgggatgctcttcgtctcca 433 Score = 48.1 bits (24), Expect = 0.029 Identities = 51/60 (85%) Strand = Plus / Plus Query: 237 gccggagcagaagtacgtccagctggtgacggacgacggcttcgagttctggttcatggg 296 |||||||||||||||| | || ||| || | |||||| |||||||||||||||||||| Sbjct: 573 gccggagcagaagtacatacacgtggccaccgtcgacgggttcgagttctggttcatggg 632
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome Length = 3570858 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 199 agggtgaaggcggccatgccg 219 ||||||||||||||||||||| Sbjct: 1498968 agggtgaaggcggccatgccg 1498988
>gb|AE017222.1| Thermus thermophilus HB27 plasmid pTT27, complete sequence Length = 232605 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 393 gggagcgggaggcctaccgcg 413 ||||||||||||||||||||| Sbjct: 211209 gggagcgggaggcctaccgcg 211189
>ref|NM_001036493.1| Arabidopsis thaliana unknown protein AT4G01600 transcript variant AT4G01600.2 mRNA, complete cds Length = 704 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 280 gagttctggttcatgggctttgtc 303 ||||| |||||||||||||||||| Sbjct: 597 gagttttggttcatgggctttgtc 620
>ref|NM_116391.2| Arabidopsis thaliana unknown protein AT4G01600 transcript variant AT4G01600.1 mRNA, complete cds Length = 731 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 280 gagttctggttcatgggctttgtc 303 ||||| |||||||||||||||||| Sbjct: 620 gagttttggttcatgggctttgtc 643
>ref|NM_122243.2| Arabidopsis thaliana unknown protein AT5G23370 mRNA, complete cds Length = 941 Score = 40.1 bits (20), Expect = 7.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 265 acggacgacggcttcgagttctggttcatggg 296 |||| ||||||||| || |||||||||||||| Sbjct: 632 acggtcgacggctttgacttctggttcatggg 663
>ref|NM_187664.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 795 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 280 gagttctggttcatgggctt 299 |||||||||||||||||||| Sbjct: 706 gagttctggttcatgggctt 725
>gb|AC120539.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0063D09 map S1559, complete sequence Length = 190721 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 373 cgtcgcggagctccggcacc 392 |||||||||||||||||||| Sbjct: 170203 cgtcgcggagctccggcacc 170222
>gb|BT015662.1| Arabidopsis thaliana At4g01600 gene, complete cds Length = 687 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 280 gagttctggttcatgggctttgtc 303 ||||| |||||||||||||||||| Sbjct: 595 gagttttggttcatgggctttgtc 618
>gb|BT015153.1| Arabidopsis thaliana At4g01600 gene, complete cds Length = 704 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 280 gagttctggttcatgggctttgtc 303 ||||| |||||||||||||||||| Sbjct: 597 gagttttggttcatgggctttgtc 620
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 280 gagttctggttcatgggctt 299 |||||||||||||||||||| Sbjct: 4576191 gagttctggttcatgggctt 4576210
>ref|XM_542162.2| PREDICTED: Canis familiaris similar to ankyrin repeat domain 24 (LOC485044), mRNA Length = 3108 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 382 gctccggcaccgggagcgggaggc 405 ||||||||| |||||||||||||| Sbjct: 1743 gctccggcagcgggagcgggaggc 1766
>ref|NM_001030732.1| Gallus gallus similar to Hypothetical protein PP2447 (LOC417746), mRNA Length = 4014 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 376 cgcggagctccggcaccggg 395 |||||||||||||||||||| Sbjct: 52 cgcggagctccggcaccggg 33
>emb|AL939114.1|SCO939114 Streptomyces coelicolor A3(2) complete genome; segment 11/29 Length = 313800 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 254 tccagctggtgacggacgac 273 |||||||||||||||||||| Sbjct: 74302 tccagctggtgacggacgac 74321
>emb|AL161492.2|ATCHRIV4 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 4 Length = 198697 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 280 gagttctggttcatgggctttgtc 303 ||||| |||||||||||||||||| Sbjct: 116792 gagttttggttcatgggctttgtc 116815
>emb|AJ851497.1| Gallus gallus mRNA for hypothetical protein, clone 3p9 Length = 4014 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 376 cgcggagctccggcaccggg 395 |||||||||||||||||||| Sbjct: 52 cgcggagctccggcaccggg 33
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 caccgccggccccatcgccg 82 |||||||||||||||||||| Sbjct: 1215890 caccgccggccccatcgccg 1215871
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 373 cgtcgcggagctccggcacc 392 |||||||||||||||||||| Sbjct: 3802531 cgtcgcggagctccggcacc 3802550
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 280 gagttctggttcatgggctt 299 |||||||||||||||||||| Sbjct: 4576306 gagttctggttcatgggctt 4576325
>emb|BX828805.1|CNS0A2AG Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL40ZA05 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 724 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 280 gagttctggttcatgggctttgtc 303 ||||| |||||||||||||||||| Sbjct: 613 gagttttggttcatgggctttgtc 636
>ref|XM_227256.2| PREDICTED: Rattus norvegicus similar to hypothetical protein MGC48915 (LOC295117), mRNA Length = 2451 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 cagcacctgccggagcagaa 248 |||||||||||||||||||| Sbjct: 1280 cagcacctgccggagcagaa 1299
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 329 tcgagcaggccattgccgcg 348 |||||||||||||||||||| Sbjct: 1477973 tcgagcaggccattgccgcg 1477954
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 131 tgctggcgctgacctcgcccaagg 154 ||||||||||||||||| |||||| Sbjct: 5905137 tgctggcgctgacctcggccaagg 5905114 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 327 cctcgagcaggccattgccgcggc 350 ||||||||||||||| |||||||| Sbjct: 5517506 cctcgagcaggccatcgccgcggc 5517529
>dbj|AB007648.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MKD15 Length = 76329 Score = 40.1 bits (20), Expect = 7.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 265 acggacgacggcttcgagttctggttcatggg 296 |||| ||||||||| || |||||||||||||| Sbjct: 74769 acggtcgacggctttgacttctggttcatggg 74738
>dbj|AK068057.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013130C18, full insert sequence Length = 1136 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 280 gagttctggttcatgggctt 299 |||||||||||||||||||| Sbjct: 857 gagttctggttcatgggctt 876
>gb|CP000020.1| Vibrio fischeri ES114 chromosome I, complete sequence Length = 2906179 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 aaggcctcacagtgctacct 56 |||||||||||||||||||| Sbjct: 1236151 aaggcctcacagtgctacct 1236132
>gb|AF104919.1|T15B16 Arabidopsis thaliana BAC T15B16 Length = 90596 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 280 gagttctggttcatgggctttgtc 303 ||||| |||||||||||||||||| Sbjct: 77181 gagttttggttcatgggctttgtc 77158
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 373 cgtcgcggagctccggcacc 392 |||||||||||||||||||| Sbjct: 3811225 cgtcgcggagctccggcacc 3811244
>gb|AC121489.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1217B09, complete sequence Length = 148894 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 280 gagttctggttcatgggctt 299 |||||||||||||||||||| Sbjct: 17146 gagttctggttcatgggctt 17165 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,700,118 Number of Sequences: 3902068 Number of extensions: 2700118 Number of successful extensions: 51589 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 42 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 51049 Number of HSP's gapped (non-prelim): 531 length of query: 516 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 493 effective length of database: 17,143,297,704 effective search space: 8451645768072 effective search space used: 8451645768072 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)